forester/data/tol_149.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
   3 <phylogeny rooted="true" rerootable="false">\r
   4   <clade>\r
   5     <name>cellular organisms</name>\r
   6     <clade>\r
   7       <taxonomy>\r
   8         <scientific_name>Neomura</scientific_name>\r
   9       </taxonomy>\r
  10       <clade>\r
  11         <taxonomy>\r
  12           <id provider="uniprot">2759</id>\r
  13           <scientific_name>Eukaryota</scientific_name>\r
  14           <rank>superkingdom</rank>\r
  15         </taxonomy>\r
  16         <clade>\r
  17           <name>Unikonta</name>\r
  18           <clade>\r
  19             <taxonomy>\r
  20               <id provider="uniprot">33154</id>\r
  21               <scientific_name>Opisthokonta</scientific_name>\r
  22               <common_name>Fungi/Metazoa group</common_name>\r
  23             </taxonomy>\r
  24             <clade>\r
  25               <taxonomy>\r
  26                 <scientific_name>Holozoa</scientific_name>\r
  27               </taxonomy>\r
  28               <clade>\r
  29                 <name>Choanoflagellatea &amp; Metazoa</name>\r
  30                 <clade>\r
  31                   <taxonomy>\r
  32                     <id provider="uniprot">33208</id>\r
  33                     <scientific_name>Metazoa</scientific_name>\r
  34                     <rank>kingdom</rank>\r
  35                   </taxonomy>\r
  36                   <clade>\r
  37                     <name>Eumetazoa</name>\r
  38                     <reference doi="10.1038/nature06614">\r
  39                     </reference>\r
  40                     <clade>\r
  41                       <name>Bilateria &amp; Cnidaria</name>\r
  42                       <clade>\r
  43                         <name>Bilateria</name>\r
  44                         <clade>\r
  45                           <name>Deuterostomia</name>\r
  46                           <reference doi="10.1038/nature04336">\r
  47                           </reference>\r
  48                           <clade>\r
  49                             <taxonomy>\r
  50                               <id provider="uniprot">7711</id>\r
  51                               <scientific_name>Chordata</scientific_name>\r
  52                               <rank>phylum</rank>\r
  53                             </taxonomy>\r
  54                             <clade>\r
  55                               <name>Urochordata &amp; Vertebrata</name>\r
  56                               <clade>\r
  57                                 <taxonomy>\r
  58                                   <id provider="uniprot">7742</id>\r
  59                                   <scientific_name>Vertebrata</scientific_name>\r
  60                                 </taxonomy>\r
  61                                 <clade>\r
  62                                   <taxonomy>\r
  63                                     <id provider="uniprot">7776</id>\r
  64                                     <scientific_name>Gnathostomata</scientific_name>\r
  65                                     <common_name>jawed vertebrates</common_name>\r
  66                                     <rank>superclass</rank>\r
  67                                   </taxonomy>\r
  68                                   <clade>\r
  69                                     <taxonomy>\r
  70                                       <id provider="uniprot">117571</id>\r
  71                                       <scientific_name>Euteleostomi</scientific_name>\r
  72                                       <common_name>bony vertebrates</common_name>\r
  73                                     </taxonomy>\r
  74                                     <clade>\r
  75                                       <taxonomy>\r
  76                                         <id provider="uniprot">8287</id>\r
  77                                         <scientific_name>Sarcopterygii</scientific_name>\r
  78                                         <common_name>lobe-finned fish</common_name>\r
  79                                       </taxonomy>\r
  80                                       <clade>\r
  81                                         <name>Tetrapoda</name>\r
  82                                         <clade>\r
  83                                           <name>Amniota</name>\r
  84                                           <clade>\r
  85                                             <taxonomy>\r
  86                                               <id provider="uniprot">40674</id>\r
  87                                               <scientific_name>Mammalia</scientific_name>\r
  88                                               <rank>class</rank>\r
  89                                             </taxonomy>\r
  90                                             <clade>\r
  91                                               <name>Theria</name>\r
  92                                               <clade>\r
  93                                                 <taxonomy>\r
  94                                                   <id provider="uniprot">9347</id>\r
  95                                                   <scientific_name>Eutheria</scientific_name>\r
  96                                                   <common_name>Placental mammals</common_name>\r
  97                                                 </taxonomy>\r
  98                                                 <reference doi="10.1002/bies.200900053">\r
  99                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
 100                                                 </reference>\r
 101                                                 <clade>\r
 102                                                   <taxonomy>\r
 103                                                     <scientific_name>Boreoeutheria</scientific_name>\r
 104                                                     <synonym>Boreotheria</synonym>\r
 105                                                   </taxonomy>\r
 106                                                   <clade>\r
 107                                                     <taxonomy>\r
 108                                                       <id provider="uniprot">314146</id>\r
 109                                                       <scientific_name>Euarchontoglires</scientific_name>\r
 110                                                       <rank>superorder</rank>\r
 111                                                     </taxonomy>\r
 112                                                     <clade>\r
 113                                                       <taxonomy>\r
 114                                                         <scientific_name>Euarchonta</scientific_name>\r
 115                                                       </taxonomy>\r
 116                                                       <clade>\r
 117                                                         <taxonomy>\r
 118                                                           <id provider="uniprot">9443</id>\r
 119                                                           <scientific_name>Primates</scientific_name>\r
 120                                                           <rank>order</rank>\r
 121                                                         </taxonomy>\r
 122                                                         <clade>\r
 123                                                           <taxonomy>\r
 124                                                             <id provider="uniprot">376913</id>\r
 125                                                             <scientific_name>Haplorrhini</scientific_name>\r
 126                                                             <rank>suborder</rank>\r
 127                                                           </taxonomy>\r
 128                                                           <clade>\r
 129                                                             <taxonomy>\r
 130                                                               <id provider="uniprot">314293</id>\r
 131                                                               <scientific_name>Simiiformes</scientific_name>\r
 132                                                               <rank>infraorder</rank>\r
 133                                                             </taxonomy>\r
 134                                                             <clade>\r
 135                                                               <taxonomy>\r
 136                                                                 <id provider="uniprot">9526</id>\r
 137                                                                 <scientific_name>Catarrhini</scientific_name>\r
 138                                                               </taxonomy>\r
 139                                                               <clade>\r
 140                                                                 <taxonomy>\r
 141                                                                   <id provider="uniprot">314295</id>\r
 142                                                                   <scientific_name>Hominoidea</scientific_name>\r
 143                                                                   <common_name>Apes</common_name>\r
 144                                                                   <rank>superfamily</rank>\r
 145                                                                 </taxonomy>\r
 146                                                                 <clade>\r
 147                                                                   <taxonomy>\r
 148                                                                     <id provider="uniprot">9604</id>\r
 149                                                                     <scientific_name>Hominidae</scientific_name>\r
 150                                                                     <common_name>Great apes</common_name>\r
 151                                                                     <rank>family</rank>\r
 152                                                                   </taxonomy>\r
 153                                                                   <clade>\r
 154                                                                     <taxonomy>\r
 155                                                                       <id provider="uniprot">207598</id>\r
 156                                                                       <scientific_name>Homininae</scientific_name>\r
 157                                                                       <rank>subfamily</rank>\r
 158                                                                     </taxonomy>\r
 159                                                                     <clade>\r
 160                                                                       <taxonomy>\r
 161                                                                         <scientific_name>Hominini</scientific_name>\r
 162                                                                         <rank>tribe</rank>\r
 163                                                                       </taxonomy>\r
 164                                                                       <clade>\r
 165                                                                         <taxonomy>\r
 166                                                                           <id provider="uniprot">9606</id>\r
 167                                                                           <code>HUMAN</code>\r
 168                                                                           <scientific_name>Homo sapiens</scientific_name>\r
 169                                                                           <common_name>Human</common_name>\r
 170                                                                           <rank>species</rank>\r
 171                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
 172                                                                         </taxonomy>\r
 173                                                                       </clade>\r
 174                                                                       <clade>\r
 175                                                                         <taxonomy>\r
 176                                                                           <id provider="uniprot">9598</id>\r
 177                                                                           <code>PANTR</code>\r
 178                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
 179                                                                           <common_name>Chimpanzee</common_name>\r
 180                                                                           <rank>species</rank>\r
 181                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
 182                                                                         </taxonomy>\r
 183                                                                       </clade>\r
 184                                                                     </clade>\r
 185                                                                     <clade>\r
 186                                                                       <taxonomy>\r
 187                                                                         <id provider="uniprot">9595</id>\r
 188                                                                         <code>GORGO</code>\r
 189                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
 190                                                                         <common_name>Western lowland gorilla</common_name>\r
 191                                                                         <rank>subspecies</rank>\r
 192                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
 193                                                                       </taxonomy>\r
 194                                                                     </clade>\r
 195                                                                   </clade>\r
 196                                                                   <clade>\r
 197                                                                     <taxonomy>\r
 198                                                                       <id provider="uniprot">9601</id>\r
 199                                                                       <code>PONAB</code>\r
 200                                                                       <scientific_name>Pongo abelii</scientific_name>\r
 201                                                                       <common_name>Sumatran orangutan</common_name>\r
 202                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
 203                                                                       <rank>species</rank>\r
 204                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>\r
 205                                                                     </taxonomy>\r
 206                                                                   </clade>\r
 207                                                                 </clade>\r
 208                                                                 <clade>\r
 209                                                                   <taxonomy>\r
 210                                                                     <id provider="uniprot">61853</id>\r
 211                                                                     <code>NOMLE</code>\r
 212                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
 213                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
 214                                                                     <synonym>Hylobates leucogenys</synonym>\r
 215                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
 216                                                                     <rank>species</rank>\r
 217                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
 218                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
 219                                                                   </taxonomy>\r
 220                                                                 </clade>\r
 221                                                               </clade>\r
 222                                                               <clade>\r
 223                                                                 <taxonomy>\r
 224                                                                   <id provider="uniprot">9528</id>\r
 225                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
 226                                                                   <rank>subfamily</rank>\r
 227                                                                 </taxonomy>\r
 228                                                                 <clade>\r
 229                                                                   <taxonomy>\r
 230                                                                     <id provider="uniprot">9544</id>\r
 231                                                                     <code>MACMU</code>\r
 232                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
 233                                                                     <common_name>Rhesus macaque</common_name>\r
 234                                                                     <rank>species</rank>\r
 235                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>\r
 236                                                                   </taxonomy>\r
 237                                                                 </clade>\r
 238                                                                 <clade>\r
 239                                                                   <taxonomy>\r
 240                                                                     <id provider="uniprot">9557</id>\r
 241                                                                     <code>PAPHA</code>\r
 242                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
 243                                                                     <common_name>Hamadryas baboon</common_name>\r
 244                                                                     <rank>species</rank>\r
 245                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
 246                                                                   </taxonomy>\r
 247                                                                 </clade>\r
 248                                                               </clade>\r
 249                                                             </clade>\r
 250                                                             <clade>\r
 251                                                               <taxonomy>\r
 252                                                                 <id provider="uniprot">9483</id>\r
 253                                                                 <code>CALJA</code>\r
 254                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
 255                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
 256                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
 257                                                                 <rank>species</rank>\r
 258                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
 259                                                               </taxonomy>\r
 260                                                             </clade>\r
 261                                                           </clade>\r
 262                                                           <clade>\r
 263                                                             <taxonomy>\r
 264                                                               <id provider="uniprot">9478</id>\r
 265                                                               <code>TARSY</code>\r
 266                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
 267                                                               <common_name>Philippine tarsier</common_name>\r
 268                                                               <rank>species</rank>\r
 269                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
 270                                                             </taxonomy>\r
 271                                                           </clade>\r
 272                                                         </clade>\r
 273                                                         <clade>\r
 274                                                           <taxonomy>\r
 275                                                             <id provider="uniprot">376911</id>\r
 276                                                             <scientific_name>Strepsirrhini</scientific_name>\r
 277                                                             <rank>suborder</rank>\r
 278                                                           </taxonomy>\r
 279                                                           <clade>\r
 280                                                             <taxonomy>\r
 281                                                               <id provider="uniprot">30608</id>\r
 282                                                               <code>MICMU</code>\r
 283                                                               <scientific_name>Microcebus murinus</scientific_name>\r
 284                                                               <common_name>Lesser mouse lemur</common_name>\r
 285                                                               <rank>species</rank>\r
 286                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
 287                                                             </taxonomy>\r
 288                                                           </clade>\r
 289                                                           <clade>\r
 290                                                             <taxonomy>\r
 291                                                               <id provider="uniprot">30611</id>\r
 292                                                               <code>OTOGA</code>\r
 293                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
 294                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
 295                                                               <synonym>Galago garnetti</synonym>\r
 296                                                               <synonym>Small-eared galago</synonym>\r
 297                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
 298                                                               <rank>species</rank>\r
 299                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
 300                                                             </taxonomy>\r
 301                                                           </clade>\r
 302                                                         </clade>\r
 303                                                       </clade>\r
 304                                                       <clade>\r
 305                                                         <taxonomy>\r
 306                                                           <id provider="uniprot">37347</id>\r
 307                                                           <code>TUPBE</code>\r
 308                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
 309                                                           <common_name>Common tree shrew</common_name>\r
 310                                                           <synonym>Tupaia glis belangeri</synonym>\r
 311                                                           <rank>species</rank>\r
 312                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
 313                                                         </taxonomy>\r
 314                                                       </clade>\r
 315                                                     </clade>\r
 316                                                     <clade>\r
 317                                                       <taxonomy>\r
 318                                                         <id provider="uniprot">314147</id>\r
 319                                                         <scientific_name>Glires</scientific_name>\r
 320                                                         <common_name>Rodents and rabbits</common_name>\r
 321                                                       </taxonomy>\r
 322                                                       <clade>\r
 323                                                         <taxonomy>\r
 324                                                           <id provider="uniprot">9989</id>\r
 325                                                           <scientific_name>Rodentia</scientific_name>\r
 326                                                           <rank>order</rank>\r
 327                                                         </taxonomy>\r
 328                                                         <clade>\r
 329                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>\r
 330                                                           <reference doi="10.1186/1471-2148-9-71">\r
 331                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
 332                                                           </reference>\r
 333                                                           <clade>\r
 334                                                             <taxonomy>\r
 335                                                               <common_name>Mouse-related clade</common_name>\r
 336                                                             </taxonomy>\r
 337                                                             <clade>\r
 338                                                               <taxonomy>\r
 339                                                                 <id provider="uniprot">337687</id>\r
 340                                                                 <scientific_name>Muroidea</scientific_name>\r
 341                                                               </taxonomy>\r
 342                                                               <clade>\r
 343                                                                 <taxonomy>\r
 344                                                                   <id provider="uniprot">39107</id>\r
 345                                                                   <scientific_name>Murinae</scientific_name>\r
 346                                                                   <rank>subfamily</rank>\r
 347                                                                 </taxonomy>\r
 348                                                                 <clade>\r
 349                                                                   <taxonomy>\r
 350                                                                     <id provider="uniprot">10090</id>\r
 351                                                                     <code>MOUSE</code>\r
 352                                                                     <scientific_name>Mus musculus</scientific_name>\r
 353                                                                     <common_name>Mouse</common_name>\r
 354                                                                     <rank>species</rank>\r
 355                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>\r
 356                                                                   </taxonomy>\r
 357                                                                 </clade>\r
 358                                                                 <clade>\r
 359                                                                   <taxonomy>\r
 360                                                                     <id provider="uniprot">10116</id>\r
 361                                                                     <code>RAT</code>\r
 362                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
 363                                                                     <common_name>Rat</common_name>\r
 364                                                                     <rank>species</rank>\r
 365                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
 366                                                                   </taxonomy>\r
 367                                                                 </clade>\r
 368                                                               </clade>\r
 369                                                               <clade>\r
 370                                                                 <taxonomy>\r
 371                                                                   <id provider="uniprot">10036</id>\r
 372                                                                   <code>MESAU</code>\r
 373                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
 374                                                                   <common_name>Golden hamster</common_name>\r
 375                                                                   <rank>species</rank>\r
 376                                                                   <uri>http://www.dicts.info/img/ud/syrian_hamster.jpg</uri>\r
 377                                                                 </taxonomy>\r
 378                                                               </clade>\r
 379                                                             </clade>\r
 380                                                             <clade>\r
 381                                                               <taxonomy>\r
 382                                                                 <id provider="uniprot">10020</id>\r
 383                                                                 <code>DIPOR</code>\r
 384                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
 385                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
 386                                                                 <rank>species</rank>\r
 387                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
 388                                                               </taxonomy>\r
 389                                                             </clade>\r
 390                                                           </clade>\r
 391                                                           <clade>\r
 392                                                             <taxonomy>\r
 393                                                               <id provider="uniprot">10141</id>\r
 394                                                               <code>CAVPO</code>\r
 395                                                               <scientific_name>Cavia porcellus</scientific_name>\r
 396                                                               <common_name>Guinea pig</common_name>\r
 397                                                               <rank>species</rank>\r
 398                                                               <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>\r
 399                                                             </taxonomy>\r
 400                                                           </clade>\r
 401                                                         </clade>\r
 402                                                         <clade>\r
 403                                                           <taxonomy>\r
 404                                                             <id provider="uniprot">43179</id>\r
 405                                                             <code>SPETR</code>\r
 406                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
 407                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
 408                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
 409                                                             <rank>species</rank>\r
 410                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
 411                                                           </taxonomy>\r
 412                                                         </clade>\r
 413                                                       </clade>\r
 414                                                       <clade>\r
 415                                                         <taxonomy>\r
 416                                                           <id provider="uniprot">9975</id>\r
 417                                                           <scientific_name>Lagomorpha</scientific_name>\r
 418                                                           <common_name>Rabbits, hares, pikas</common_name>\r
 419                                                           <rank>order</rank>\r
 420                                                         </taxonomy>\r
 421                                                         <clade>\r
 422                                                           <taxonomy>\r
 423                                                             <id provider="uniprot">9978</id>\r
 424                                                             <code>OCHPR</code>\r
 425                                                             <scientific_name>Ochotona princeps</scientific_name>\r
 426                                                             <common_name>Southern American pika</common_name>\r
 427                                                             <rank>species</rank>\r
 428                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
 429                                                           </taxonomy>\r
 430                                                         </clade>\r
 431                                                         <clade>\r
 432                                                           <taxonomy>\r
 433                                                             <id provider="uniprot">9986</id>\r
 434                                                             <code>RABIT</code>\r
 435                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
 436                                                             <common_name>Rabbit</common_name>\r
 437                                                             <rank>species</rank>\r
 438                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>\r
 439                                                           </taxonomy>\r
 440                                                         </clade>\r
 441                                                       </clade>\r
 442                                                     </clade>\r
 443                                                   </clade>\r
 444                                                   <clade>\r
 445                                                     <taxonomy>\r
 446                                                       <id provider="uniprot">314145</id>\r
 447                                                       <scientific_name>Laurasiatheria</scientific_name>\r
 448                                                       <rank>superorder</rank>\r
 449                                                     </taxonomy>\r
 450                                                     <clade>\r
 451                                                       <taxonomy>\r
 452                                                         <scientific_name>Scrotifera</scientific_name>\r
 453                                                       </taxonomy>\r
 454                                                       <clade>\r
 455                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
 456                                                         <clade>\r
 457                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
 458                                                           <clade>\r
 459                                                             <taxonomy>\r
 460                                                               <id provider="uniprot">91561</id>\r
 461                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
 462                                                               <common_name>Even-toed ungulates</common_name>\r
 463                                                             </taxonomy>\r
 464                                                             <clade>\r
 465                                                               <name>Cetruminantia &amp; Suina</name>\r
 466                                                               <clade>\r
 467                                                                 <taxonomy>\r
 468                                                                   <scientific_name>Cetruminantia</scientific_name>\r
 469                                                                 </taxonomy>\r
 470                                                                 <clade>\r
 471                                                                   <taxonomy>\r
 472                                                                     <id provider="uniprot">9895</id>\r
 473                                                                     <scientific_name>Bovidae</scientific_name>\r
 474                                                                     <rank>family</rank>\r
 475                                                                   </taxonomy>\r
 476                                                                   <clade>\r
 477                                                                     <taxonomy>\r
 478                                                                       <id provider="uniprot">9913</id>\r
 479                                                                       <code>BOVIN</code>\r
 480                                                                       <scientific_name>Bos taurus</scientific_name>\r
 481                                                                       <common_name>Bovine</common_name>\r
 482                                                                       <synonym>Bos bovis</synonym>\r
 483                                                                       <rank>species</rank>\r
 484                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>\r
 485                                                                     </taxonomy>\r
 486                                                                   </clade>\r
 487                                                                   <clade>\r
 488                                                                     <taxonomy>\r
 489                                                                       <id provider="uniprot">9940</id>\r
 490                                                                       <code>SHEEP</code>\r
 491                                                                       <scientific_name>Ovis aries</scientific_name>\r
 492                                                                       <common_name>Sheep</common_name>\r
 493                                                                       <rank>species</rank>\r
 494                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
 495                                                                     </taxonomy>\r
 496                                                                   </clade>\r
 497                                                                 </clade>\r
 498                                                                 <clade>\r
 499                                                                   <taxonomy>\r
 500                                                                     <id provider="uniprot">9721</id>\r
 501                                                                     <scientific_name>Cetacea</scientific_name>\r
 502                                                                     <common_name>Whales</common_name>\r
 503                                                                     <rank>order</rank>\r
 504                                                                   </taxonomy>\r
 505                                                                   <clade>\r
 506                                                                     <taxonomy>\r
 507                                                                       <id provider="uniprot">9771</id>\r
 508                                                                       <code>BALMU</code>\r
 509                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
 510                                                                       <common_name>Blue whale</common_name>\r
 511                                                                       <rank>species</rank>\r
 512                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
 513                                                                     </taxonomy>\r
 514                                                                   </clade>\r
 515                                                                   <clade>\r
 516                                                                     <taxonomy>\r
 517                                                                       <id provider="uniprot">9739</id>\r
 518                                                                       <code>TURTR</code>\r
 519                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
 520                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
 521                                                                       <synonym>Delphinus truncatus</synonym>\r
 522                                                                       <rank>species</rank>\r
 523                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
 524                                                                     </taxonomy>\r
 525                                                                   </clade>\r
 526                                                                 </clade>\r
 527                                                               </clade>\r
 528                                                               <clade>\r
 529                                                                 <taxonomy>\r
 530                                                                   <id provider="uniprot">9823</id>\r
 531                                                                   <code>PIG</code>\r
 532                                                                   <scientific_name>Sus scrofa</scientific_name>\r
 533                                                                   <common_name>Pig</common_name>\r
 534                                                                   <rank>species</rank>\r
 535                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
 536                                                                 </taxonomy>\r
 537                                                               </clade>\r
 538                                                             </clade>\r
 539                                                             <clade>\r
 540                                                               <taxonomy>\r
 541                                                                 <id provider="uniprot">30538</id>\r
 542                                                                 <code>LAMPA</code>\r
 543                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
 544                                                                 <common_name>Alpaca</common_name>\r
 545                                                                 <synonym>Lama pacos</synonym>\r
 546                                                                 <rank>species</rank>\r
 547                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>\r
 548                                                               </taxonomy>\r
 549                                                             </clade>\r
 550                                                           </clade>\r
 551                                                           <clade>\r
 552                                                             <taxonomy>\r
 553                                                               <id provider="uniprot">9796</id>\r
 554                                                               <code>HORSE</code>\r
 555                                                               <scientific_name>Equus caballus</scientific_name>\r
 556                                                               <common_name>Horse</common_name>\r
 557                                                               <rank>species</rank>\r
 558                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
 559                                                             </taxonomy>\r
 560                                                           </clade>\r
 561                                                         </clade>\r
 562                                                         <clade>\r
 563                                                           <taxonomy>\r
 564                                                             <id provider="uniprot">9397</id>\r
 565                                                             <scientific_name>Chiroptera</scientific_name>\r
 566                                                             <common_name>Bats</common_name>\r
 567                                                             <rank>order</rank>\r
 568                                                           </taxonomy>\r
 569                                                           <clade>\r
 570                                                             <taxonomy>\r
 571                                                               <id provider="uniprot">59463</id>\r
 572                                                               <code>MYOLU</code>\r
 573                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
 574                                                               <common_name>Little brown bat</common_name>\r
 575                                                               <rank>species</rank>\r
 576                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
 577                                                             </taxonomy>\r
 578                                                           </clade>\r
 579                                                           <clade>\r
 580                                                             <taxonomy>\r
 581                                                               <id provider="uniprot">132908</id>\r
 582                                                               <code>PTEVA</code>\r
 583                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
 584                                                               <common_name>Large flying fox</common_name>\r
 585                                                               <rank>species</rank>\r
 586                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
 587                                                             </taxonomy>\r
 588                                                           </clade>\r
 589                                                         </clade>\r
 590                                                       </clade>\r
 591                                                       <clade>\r
 592                                                         <name>Carnivora</name>\r
 593                                                         <taxonomy>\r
 594                                                           <id provider="uniprot">33554</id>\r
 595                                                           <scientific_name>Carnivora</scientific_name>\r
 596                                                           <rank>order</rank>\r
 597                                                         </taxonomy>\r
 598                                                         <clade>\r
 599                                                           <taxonomy>\r
 600                                                             <id provider="uniprot">379584</id>\r
 601                                                             <scientific_name>Caniformia</scientific_name>\r
 602                                                             <rank>suborder</rank>\r
 603                                                           </taxonomy>\r
 604                                                           <clade>\r
 605                                                             <taxonomy>\r
 606                                                               <id provider="uniprot">9646</id>\r
 607                                                               <code>AILME</code>\r
 608                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
 609                                                               <common_name>Giant panda</common_name>\r
 610                                                               <rank>species</rank>\r
 611                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
 612                                                             </taxonomy>\r
 613                                                           </clade>\r
 614                                                           <clade>\r
 615                                                             <taxonomy>\r
 616                                                               <id provider="uniprot">9615</id>\r
 617                                                               <code>CANFA</code>\r
 618                                                               <scientific_name>Canis familiaris</scientific_name>\r
 619                                                               <common_name>Dog</common_name>\r
 620                                                               <synonym>Canis lupus familiaris</synonym>\r
 621                                                               <rank>subspecies</rank>\r
 622                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
 623                                                             </taxonomy>\r
 624                                                           </clade>\r
 625                                                         </clade>\r
 626                                                         <clade>\r
 627                                                           <taxonomy>\r
 628                                                             <id provider="uniprot">9685</id>\r
 629                                                             <code>FELCA</code>\r
 630                                                             <scientific_name>Felis catus</scientific_name>\r
 631                                                             <common_name>Cat</common_name>\r
 632                                                             <synonym>Felis silvestris catus</synonym>\r
 633                                                             <rank>species</rank>\r
 634                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
 635                                                           </taxonomy>\r
 636                                                         </clade>\r
 637                                                       </clade>\r
 638                                                     </clade>\r
 639                                                     <clade>\r
 640                                                       <taxonomy>\r
 641                                                         <id provider="uniprot">9362</id>\r
 642                                                         <scientific_name>Insectivora</scientific_name>\r
 643                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
 644                                                         <rank>order</rank>\r
 645                                                       </taxonomy>\r
 646                                                       <clade>\r
 647                                                         <taxonomy>\r
 648                                                           <id provider="uniprot">9365</id>\r
 649                                                           <code>ERIEU</code>\r
 650                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
 651                                                           <common_name>Western European hedgehog</common_name>\r
 652                                                           <rank>species</rank>\r
 653                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
 654                                                         </taxonomy>\r
 655                                                       </clade>\r
 656                                                       <clade>\r
 657                                                         <taxonomy>\r
 658                                                           <id provider="uniprot">42254</id>\r
 659                                                           <code>SORAR</code>\r
 660                                                           <scientific_name>Sorex araneus</scientific_name>\r
 661                                                           <common_name>Eurasian common shrew</common_name>\r
 662                                                           <synonym>European shrew</synonym>\r
 663                                                           <rank>species</rank>\r
 664                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
 665                                                         </taxonomy>\r
 666                                                       </clade>\r
 667                                                     </clade>\r
 668                                                   </clade>\r
 669                                                 </clade>\r
 670                                                 <clade>\r
 671                                                   <taxonomy>\r
 672                                                     <scientific_name>Atlantogenata</scientific_name>\r
 673                                                   </taxonomy>\r
 674                                                   <clade>\r
 675                                                     <taxonomy>\r
 676                                                       <id provider="uniprot">311790</id>\r
 677                                                       <scientific_name>Afrotheria</scientific_name>\r
 678                                                       <rank>superorder</rank>\r
 679                                                     </taxonomy>\r
 680                                                     <clade>\r
 681                                                       <taxonomy>\r
 682                                                         <scientific_name>Paenungulata</scientific_name>\r
 683                                                       </taxonomy>\r
 684                                                       <clade>\r
 685                                                         <taxonomy>\r
 686                                                           <id provider="uniprot">9785</id>\r
 687                                                           <code>LOXAF</code>\r
 688                                                           <scientific_name>Loxodonta africana</scientific_name>\r
 689                                                           <common_name>African savanna elephant</common_name>\r
 690                                                           <rank>species</rank>\r
 691                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
 692                                                         </taxonomy>\r
 693                                                       </clade>\r
 694                                                       <clade>\r
 695                                                         <taxonomy>\r
 696                                                           <id provider="uniprot">9813</id>\r
 697                                                           <code>PROCA</code>\r
 698                                                           <scientific_name>Procavia capensis</scientific_name>\r
 699                                                           <common_name>Cape hyrax</common_name>\r
 700                                                           <synonym>Rock dassie</synonym>\r
 701                                                           <rank>species</rank>\r
 702                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
 703                                                         </taxonomy>\r
 704                                                       </clade>\r
 705                                                     </clade>\r
 706                                                     <clade>\r
 707                                                       <taxonomy>\r
 708                                                         <id provider="uniprot">9371</id>\r
 709                                                         <code>ECHTE</code>\r
 710                                                         <scientific_name>Echinops telfairi</scientific_name>\r
 711                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
 712                                                         <rank>species</rank>\r
 713                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
 714                                                       </taxonomy>\r
 715                                                     </clade>\r
 716                                                   </clade>\r
 717                                                   <clade>\r
 718                                                     <taxonomy>\r
 719                                                       <id provider="uniprot">9348</id>\r
 720                                                       <scientific_name>Xenarthra</scientific_name>\r
 721                                                       <synonym>Edentata</synonym>\r
 722                                                       <rank>superorder</rank>\r
 723                                                     </taxonomy>\r
 724                                                     <clade>\r
 725                                                       <taxonomy>\r
 726                                                         <id provider="uniprot">9358</id>\r
 727                                                         <code>CHOHO</code>\r
 728                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
 729                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
 730                                                         <rank>species</rank>\r
 731                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
 732                                                       </taxonomy>\r
 733                                                     </clade>\r
 734                                                     <clade>\r
 735                                                       <taxonomy>\r
 736                                                         <id provider="uniprot">9361</id>\r
 737                                                         <code>DASNO</code>\r
 738                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
 739                                                         <common_name>Nine-banded armadillo</common_name>\r
 740                                                         <rank>species</rank>\r
 741                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
 742                                                       </taxonomy>\r
 743                                                     </clade>\r
 744                                                   </clade>\r
 745                                                 </clade>\r
 746                                               </clade>\r
 747                                               <clade>\r
 748                                                 <taxonomy>\r
 749                                                   <id provider="uniprot">9263</id>\r
 750                                                   <scientific_name>Metatheria</scientific_name>\r
 751                                                   <common_name>Marsupials</common_name>\r
 752                                                 </taxonomy>\r
 753                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
 754                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
 755                                                 </reference>\r
 756                                                 <reference>\r
 757                                                 </reference>\r
 758                                                 <clade>\r
 759                                                   <taxonomy>\r
 760                                                     <scientific_name>Eometatheria</scientific_name>\r
 761                                                   </taxonomy>\r
 762                                                   <clade>\r
 763                                                     <taxonomy>\r
 764                                                       <id provider="uniprot">9315</id>\r
 765                                                       <code>MACEU</code>\r
 766                                                       <scientific_name>Macropus eugenii</scientific_name>\r
 767                                                       <common_name>Tammar wallaby</common_name>\r
 768                                                       <rank>species</rank>\r
 769                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
 770                                                     </taxonomy>\r
 771                                                   </clade>\r
 772                                                   <clade>\r
 773                                                     <taxonomy>\r
 774                                                       <id provider="uniprot">9305</id>\r
 775                                                       <code>SARHA</code>\r
 776                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
 777                                                       <common_name>Tasmanian devil</common_name>\r
 778                                                       <synonym>Sarcophilus laniarius</synonym>\r
 779                                                       <rank>species</rank>\r
 780                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
 781                                                     </taxonomy>\r
 782                                                   </clade>\r
 783                                                 </clade>\r
 784                                                 <clade>\r
 785                                                   <taxonomy>\r
 786                                                     <id provider="uniprot">13616</id>\r
 787                                                     <code>MONDO</code>\r
 788                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
 789                                                     <common_name>Short-tailed gray opossum</common_name>\r
 790                                                     <rank>species</rank>\r
 791                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
 792                                                   </taxonomy>\r
 793                                                 </clade>\r
 794                                               </clade>\r
 795                                             </clade>\r
 796                                             <clade>\r
 797                                               <taxonomy>\r
 798                                                 <id provider="uniprot">9258</id>\r
 799                                                 <code>ORNAN</code>\r
 800                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
 801                                                 <common_name>Duckbill platypus</common_name>\r
 802                                                 <rank>species</rank>\r
 803                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>\r
 804                                               </taxonomy>\r
 805                                             </clade>\r
 806                                           </clade>\r
 807                                           <clade>\r
 808                                             <taxonomy>\r
 809                                               <id provider="uniprot">8457</id>\r
 810                                               <scientific_name>Sauropsida</scientific_name>\r
 811                                             </taxonomy>\r
 812                                             <clade>\r
 813                                               <name>Archosauria &amp; Testudines</name>\r
 814                                               <reference doi="10.1038/ng.2615">\r
 815                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
 816                                               </reference>\r
 817                                               <reference>\r
 818                                               </reference>\r
 819                                               <reference>\r
 820                                               </reference>\r
 821                                               <clade>\r
 822                                                 <taxonomy>\r
 823                                                   <id provider="uniprot">8492</id>\r
 824                                                   <scientific_name>Archosauria</scientific_name>\r
 825                                                 </taxonomy>\r
 826                                                 <clade>\r
 827                                                   <name>Neognathae</name>\r
 828                                                   <taxonomy>\r
 829                                                     <id provider="uniprot">8825</id>\r
 830                                                     <scientific_name>Neognathae</scientific_name>\r
 831                                                     <rank>superorder</rank>\r
 832                                                   </taxonomy>\r
 833                                                   <clade>\r
 834                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
 835                                                     <clade>\r
 836                                                       <taxonomy>\r
 837                                                         <id provider="uniprot">9005</id>\r
 838                                                         <scientific_name>Phasianidae</scientific_name>\r
 839                                                         <rank>family</rank>\r
 840                                                       </taxonomy>\r
 841                                                       <clade>\r
 842                                                         <taxonomy>\r
 843                                                           <id provider="uniprot">9031</id>\r
 844                                                           <code>CHICK</code>\r
 845                                                           <scientific_name>Gallus gallus</scientific_name>\r
 846                                                           <common_name>Chicken</common_name>\r
 847                                                           <synonym>Gallus domesticus</synonym>\r
 848                                                           <rank>species</rank>\r
 849                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
 850                                                         </taxonomy>\r
 851                                                       </clade>\r
 852                                                       <clade>\r
 853                                                         <taxonomy>\r
 854                                                           <id provider="uniprot">9103</id>\r
 855                                                           <code>MELGA</code>\r
 856                                                           <scientific_name>Meleagris gallopavo</scientific_name>\r
 857                                                           <common_name>Common turkey</common_name>\r
 858                                                           <rank>species</rank>\r
 859                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
 860                                                         </taxonomy>\r
 861                                                       </clade>\r
 862                                                     </clade>\r
 863                                                     <clade>\r
 864                                                       <taxonomy>\r
 865                                                         <id provider="uniprot">8839</id>\r
 866                                                         <code>ANAPL</code>\r
 867                                                         <scientific_name>Anas platyrhynchos</scientific_name>\r
 868                                                         <common_name>Domestic duck</common_name>\r
 869                                                         <synonym>Anas boschas</synonym>\r
 870                                                         <rank>species</rank>\r
 871                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
 872                                                       </taxonomy>\r
 873                                                     </clade>\r
 874                                                   </clade>\r
 875                                                   <clade>\r
 876                                                     <taxonomy>\r
 877                                                       <id provider="uniprot">59729</id>\r
 878                                                       <code>TAEGU</code>\r
 879                                                       <scientific_name>Taeniopygia guttata</scientific_name>\r
 880                                                       <common_name>Zebra finch</common_name>\r
 881                                                       <synonym>Poephila guttata</synonym>\r
 882                                                       <rank>species</rank>\r
 883                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
 884                                                     </taxonomy>\r
 885                                                   </clade>\r
 886                                                 </clade>\r
 887                                                 <clade>\r
 888                                                   <taxonomy>\r
 889                                                     <id provider="uniprot">8496</id>\r
 890                                                     <code>ALLMI</code>\r
 891                                                     <scientific_name>Alligator mississippiensis</scientific_name>\r
 892                                                     <common_name>American alligator</common_name>\r
 893                                                     <rank>species</rank>\r
 894                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>\r
 895                                                   </taxonomy>\r
 896                                                 </clade>\r
 897                                               </clade>\r
 898                                               <clade>\r
 899                                                 <taxonomy>\r
 900                                                   <id provider="uniprot">13735</id>\r
 901                                                   <code>PELSI</code>\r
 902                                                   <scientific_name>Pelodiscus sinensis</scientific_name>\r
 903                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>\r
 904                                                   <common_name>Chinese softshell turtle</common_name>\r
 905                                                   <synonym>Trionyx sinensis</synonym>\r
 906                                                   <rank>species</rank>\r
 907                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>\r
 908                                                 </taxonomy>\r
 909                                               </clade>\r
 910                                             </clade>\r
 911                                             <clade>\r
 912                                               <taxonomy>\r
 913                                                 <id provider="uniprot">28377</id>\r
 914                                                 <code>ANOCA</code>\r
 915                                                 <scientific_name>Anolis carolinensis</scientific_name>\r
 916                                                 <authority>Voigt, 1832</authority>\r
 917                                                 <common_name>Green anole</common_name>\r
 918                                                 <synonym>American chameleon</synonym>\r
 919                                                 <rank>species</rank>\r
 920                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
 921                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
 922                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg</uri>\r
 923                                               </taxonomy>\r
 924                                             </clade>\r
 925                                           </clade>\r
 926                                         </clade>\r
 927                                         <clade>\r
 928                                           <taxonomy>\r
 929                                             <id provider="uniprot">8353</id>\r
 930                                             <scientific_name>Xenopus</scientific_name>\r
 931                                             <rank>genus</rank>\r
 932                                           </taxonomy>\r
 933                                           <clade>\r
 934                                             <taxonomy>\r
 935                                               <id provider="uniprot">8355</id>\r
 936                                               <code>XENLA</code>\r
 937                                               <scientific_name>Xenopus laevis</scientific_name>\r
 938                                               <authority>Daudin, 1802</authority>\r
 939                                               <common_name>African clawed frog</common_name>\r
 940                                               <synonym>Bufo laevis</synonym>\r
 941                                               <rank>species</rank>\r
 942                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
 943                                             </taxonomy>\r
 944                                           </clade>\r
 945                                           <clade>\r
 946                                             <taxonomy>\r
 947                                               <id provider="uniprot">8364</id>\r
 948                                               <code>XENTR</code>\r
 949                                               <scientific_name>Xenopus tropicalis</scientific_name>\r
 950                                               <common_name>Western clawed frog</common_name>\r
 951                                               <synonym>Silurana tropicalis</synonym>\r
 952                                               <rank>species</rank>\r
 953                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
 954                                             </taxonomy>\r
 955                                           </clade>\r
 956                                         </clade>\r
 957                                       </clade>\r
 958                                       <clade>\r
 959                                         <taxonomy>\r
 960                                           <id provider="uniprot">7897</id>\r
 961                                           <code>LATCH</code>\r
 962                                           <scientific_name>Latimeria chalumnae</scientific_name>\r
 963                                           <common_name>West Indian ocean coelacanth</common_name>\r
 964                                           <rank>species</rank>\r
 965                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>\r
 966                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>\r
 967                                         </taxonomy>\r
 968                                       </clade>\r
 969                                     </clade>\r
 970                                     <clade>\r
 971                                       <name>Teleostei</name>\r
 972                                       <taxonomy>\r
 973                                         <id provider="uniprot">32443</id>\r
 974                                         <scientific_name>Teleostei</scientific_name>\r
 975                                       </taxonomy>\r
 976                                       <clade>\r
 977                                         <taxonomy>\r
 978                                           <id provider="uniprot">123368</id>\r
 979                                           <scientific_name>Acanthomorpha</scientific_name>\r
 980                                         </taxonomy>\r
 981                                         <clade>\r
 982                                           <taxonomy>\r
 983                                             <id provider="uniprot">32485</id>\r
 984                                             <scientific_name>Percomorpha</scientific_name>\r
 985                                           </taxonomy>\r
 986                                           <clade>\r
 987                                             <taxonomy>\r
 988                                               <id provider="uniprot">129949</id>\r
 989                                               <scientific_name>Smegmamorpha</scientific_name>\r
 990                                             </taxonomy>\r
 991                                             <clade>\r
 992                                               <taxonomy>\r
 993                                                 <id provider="uniprot">32456</id>\r
 994                                                 <scientific_name>Atherinomorpha</scientific_name>\r
 995                                               </taxonomy>\r
 996                                               <clade>\r
 997                                                 <taxonomy>\r
 998                                                   <id provider="uniprot">8090</id>\r
 999                                                   <code>ORYLA</code>\r
1000                                                   <scientific_name>Oryzias latipes</scientific_name>\r
1001                                                   <common_name>Medaka fish</common_name>\r
1002                                                   <synonym>Japanese ricefish</synonym>\r
1003                                                   <rank>species</rank>\r
1004                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
1005                                                 </taxonomy>\r
1006                                               </clade>\r
1007                                               <clade>\r
1008                                                 <taxonomy>\r
1009                                                   <id provider="uniprot">8083</id>\r
1010                                                   <code>XIPMA</code>\r
1011                                                   <scientific_name>Xiphophorus maculatus</scientific_name>\r
1012                                                   <authority>Guenther, 1866</authority>\r
1013                                                   <common_name>Southern platyfish</common_name>\r
1014                                                   <synonym>Platypoecilus maculatus</synonym>\r
1015                                                   <rank>species</rank>\r
1016                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>\r
1017                                                 </taxonomy>\r
1018                                               </clade>\r
1019                                             </clade>\r
1020                                             <clade>\r
1021                                               <taxonomy>\r
1022                                                 <id provider="uniprot">69293</id>\r
1023                                                 <code>GASAC</code>\r
1024                                                 <scientific_name>Gasterosteus aculeatus</scientific_name>\r
1025                                                 <common_name>Three-spined stickleback</common_name>\r
1026                                                 <rank>species</rank>\r
1027                                                 <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>\r
1028                                               </taxonomy>\r
1029                                             </clade>\r
1030                                           </clade>\r
1031                                           <clade>\r
1032                                             <taxonomy>\r
1033                                               <id provider="uniprot">31031</id>\r
1034                                               <scientific_name>Tetraodontidae</scientific_name>\r
1035                                               <common_name>puffers</common_name>\r
1036                                               <rank>family</rank>\r
1037                                             </taxonomy>\r
1038                                             <clade>\r
1039                                               <taxonomy>\r
1040                                                 <id provider="uniprot">31033</id>\r
1041                                                 <code>TAKRU</code>\r
1042                                                 <scientific_name>Takifugu rubripes</scientific_name>\r
1043                                                 <common_name>Japanese pufferfish</common_name>\r
1044                                                 <synonym>Fugu rubripes</synonym>\r
1045                                                 <rank>species</rank>\r
1046                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
1047                                               </taxonomy>\r
1048                                             </clade>\r
1049                                             <clade>\r
1050                                               <taxonomy>\r
1051                                                 <id provider="uniprot">99883</id>\r
1052                                                 <code>TETNG</code>\r
1053                                                 <scientific_name>Tetraodon nigroviridis</scientific_name>\r
1054                                                 <common_name>Green puffer</common_name>\r
1055                                                 <synonym>Chelonodon nigroviridis</synonym>\r
1056                                                 <rank>species</rank>\r
1057                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
1058                                               </taxonomy>\r
1059                                             </clade>\r
1060                                           </clade>\r
1061                                           <clade>\r
1062                                             <taxonomy>\r
1063                                               <id provider="uniprot">8128</id>\r
1064                                               <code>ORENI</code>\r
1065                                               <scientific_name>Tilapia nilotica</scientific_name>\r
1066                                               <authority>Linnaeus, 1758</authority>\r
1067                                               <common_name>Nile tilapia</common_name>\r
1068                                               <synonym>Tilapia nilotica</synonym>\r
1069                                               <rank>species</rank>\r
1070                                               <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>\r
1071                                             </taxonomy>\r
1072                                           </clade>\r
1073                                         </clade>\r
1074                                         <clade>\r
1075                                           <taxonomy>\r
1076                                             <id provider="uniprot">8049</id>\r
1077                                             <code>GADMO</code>\r
1078                                             <scientific_name>Gadus morhua</scientific_name>\r
1079                                             <common_name>Atlantic cod</common_name>\r
1080                                             <rank>species</rank>\r
1081                                             <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
1082                                           </taxonomy>\r
1083                                         </clade>\r
1084                                       </clade>\r
1085                                       <clade>\r
1086                                         <taxonomy>\r
1087                                           <id provider="uniprot">7955</id>\r
1088                                           <code>DANRE</code>\r
1089                                           <scientific_name>Danio rerio</scientific_name>\r
1090                                           <common_name>Zebrafish</common_name>\r
1091                                           <synonym>Brachydanio rerio</synonym>\r
1092                                           <rank>species</rank>\r
1093                                           <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>\r
1094                                         </taxonomy>\r
1095                                       </clade>\r
1096                                     </clade>\r
1097                                   </clade>\r
1098                                   <clade>\r
1099                                     <taxonomy>\r
1100                                       <id provider="uniprot">7868</id>\r
1101                                       <code>CALMI</code>\r
1102                                       <scientific_name>Callorhynchus milii</scientific_name>\r
1103                                       <common_name>Australian ghost shark</common_name>\r
1104                                       <synonym>Australian ghost shark</synonym>\r
1105                                       <rank>species</rank>\r
1106                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1107                                     </taxonomy>\r
1108                                   </clade>\r
1109                                 </clade>\r
1110                                 <clade>\r
1111                                   <taxonomy>\r
1112                                     <id provider="uniprot">7757</id>\r
1113                                     <code>PETMA</code>\r
1114                                     <scientific_name>Petromyzon marinus</scientific_name>\r
1115                                     <common_name>Sea lamprey</common_name>\r
1116                                     <rank>species</rank>\r
1117                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1118                                   </taxonomy>\r
1119                                 </clade>\r
1120                               </clade>\r
1121                               <clade>\r
1122                                 <name>Urochordata</name>\r
1123                                 <taxonomy>\r
1124                                   <id provider="uniprot">7712</id>\r
1125                                   <scientific_name>Urochordata</scientific_name>\r
1126                                   <rank>subphylum</rank>\r
1127                                 </taxonomy>\r
1128                                 <clade>\r
1129                                   <taxonomy>\r
1130                                     <id provider="uniprot">7718</id>\r
1131                                     <scientific_name>Ciona</scientific_name>\r
1132                                     <rank>genus</rank>\r
1133                                   </taxonomy>\r
1134                                   <clade>\r
1135                                     <taxonomy>\r
1136                                       <id provider="uniprot">7719</id>\r
1137                                       <code>CIOIN</code>\r
1138                                       <scientific_name>Ciona intestinalis</scientific_name>\r
1139                                       <common_name>Transparent sea squirt</common_name>\r
1140                                       <synonym>Ascidia intestinalis</synonym>\r
1141                                       <rank>species</rank>\r
1142                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1143                                     </taxonomy>\r
1144                                   </clade>\r
1145                                   <clade>\r
1146                                     <taxonomy>\r
1147                                       <id provider="uniprot">51511</id>\r
1148                                       <code>CIOSA</code>\r
1149                                       <scientific_name>Ciona savignyi</scientific_name>\r
1150                                       <common_name>Pacific transparent sea squirt</common_name>\r
1151                                       <rank>species</rank>\r
1152                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1153                                     </taxonomy>\r
1154                                   </clade>\r
1155                                 </clade>\r
1156                                 <clade>\r
1157                                   <taxonomy>\r
1158                                     <id provider="ncbi">34765</id>\r
1159                                     <code>OIKDI</code>\r
1160                                     <scientific_name>Oikopleura dioica</scientific_name>\r
1161                                     <common_name>Tunicate</common_name>\r
1162                                     <rank>species</rank>\r
1163                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1164                                   </taxonomy>\r
1165                                 </clade>\r
1166                               </clade>\r
1167                             </clade>\r
1168                             <clade>\r
1169                               <taxonomy>\r
1170                                 <id provider="uniprot">7739</id>\r
1171                                 <code>BRAFL</code>\r
1172                                 <scientific_name>Branchiostoma floridae</scientific_name>\r
1173                                 <common_name>Florida lancelet</common_name>\r
1174                                 <synonym>Amphioxus</synonym>\r
1175                                 <rank>species</rank>\r
1176                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>\r
1177                               </taxonomy>\r
1178                             </clade>\r
1179                           </clade>\r
1180                           <clade>\r
1181                             <name>Hemichordata &amp; Echinodermata</name>\r
1182                             <clade>\r
1183                               <taxonomy>\r
1184                                 <id provider="uniprot">10224</id>\r
1185                                 <code>SACKO</code>\r
1186                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1187                                 <authority>Agassiz, 1873</authority>\r
1188                                 <common_name>Acorn worm</common_name>\r
1189                                 <rank>species</rank>\r
1190                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>\r
1191                               </taxonomy>\r
1192                             </clade>\r
1193                             <clade>\r
1194                               <taxonomy>\r
1195                                 <id provider="uniprot">7668</id>\r
1196                                 <code>STRPU</code>\r
1197                                 <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1198                                 <common_name>Purple sea urchin</common_name>\r
1199                                 <rank>species</rank>\r
1200                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1201                               </taxonomy>\r
1202                             </clade>\r
1203                           </clade>\r
1204                         </clade>\r
1205                         <clade>\r
1206                           <name>Protostomia</name>\r
1207                           <clade>\r
1208                             <name>Ecdysozoa</name>\r
1209                             <clade>\r
1210                               <taxonomy>\r
1211                                 <id provider="uniprot">6656</id>\r
1212                                 <scientific_name>Arthropoda</scientific_name>\r
1213                                 <rank>phylum</rank>\r
1214                               </taxonomy>\r
1215                               <clade>\r
1216                                 <taxonomy>\r
1217                                   <id provider="uniprot">197563</id>\r
1218                                   <scientific_name>Mandibulata</scientific_name>\r
1219                                 </taxonomy>\r
1220                                 <clade>\r
1221                                   <name>Pancrustacea</name>\r
1222                                   <clade>\r
1223                                     <taxonomy>\r
1224                                       <id provider="uniprot">33340</id>\r
1225                                       <scientific_name>Neoptera</scientific_name>\r
1226                                       <rank>subclass</rank>\r
1227                                     </taxonomy>\r
1228                                     <clade>\r
1229                                       <taxonomy>\r
1230                                         <id provider="uniprot">33392</id>\r
1231                                         <scientific_name>Endopterygota</scientific_name>\r
1232                                         <rank>infraclass</rank>\r
1233                                       </taxonomy>\r
1234                                       <clade>\r
1235                                         <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>\r
1236                                         <clade>\r
1237                                           <name>Lepidoptera &amp; Diptera</name>\r
1238                                           <clade>\r
1239                                             <taxonomy>\r
1240                                               <id provider="uniprot">7147</id>\r
1241                                               <scientific_name>Diptera</scientific_name>\r
1242                                               <rank>order</rank>\r
1243                                             </taxonomy>\r
1244                                             <clade>\r
1245                                               <taxonomy>\r
1246                                                 <id provider="uniprot">7215</id>\r
1247                                                 <scientific_name>Drosophila</scientific_name>\r
1248                                                 <common_name>fruit flies</common_name>\r
1249                                                 <rank>genus</rank>\r
1250                                               </taxonomy>\r
1251                                               <reference doi="10.1534/genetics.111.126540">\r
1252                                                 <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
1253                                               </reference>\r
1254                                               <clade>\r
1255                                                 <taxonomy>\r
1256                                                   <id provider="uniprot">32341</id>\r
1257                                                   <scientific_name>Sophophora</scientific_name>\r
1258                                                   <rank>subgenus</rank>\r
1259                                                 </taxonomy>\r
1260                                                 <clade>\r
1261                                                   <name>melanogaster &amp; pseudoobscura subgroups</name>\r
1262                                                   <clade>\r
1263                                                     <taxonomy>\r
1264                                                       <id provider="uniprot">32346</id>\r
1265                                                       <scientific_name>melanogaster group</scientific_name>\r
1266                                                     </taxonomy>\r
1267                                                     <clade>\r
1268                                                       <taxonomy>\r
1269                                                         <id provider="uniprot">32351</id>\r
1270                                                         <scientific_name>melanogaster subgroup</scientific_name>\r
1271                                                       </taxonomy>\r
1272                                                       <clade>\r
1273                                                         <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
1274                                                         <clade>\r
1275                                                           <name>DROSE &amp; DROSI &amp; DROME</name>\r
1276                                                           <clade>\r
1277                                                             <name>DROSE &amp; DROSI</name>\r
1278                                                             <clade>\r
1279                                                               <taxonomy>\r
1280                                                                 <id provider="uniprot">7238</id>\r
1281                                                                 <code>DROSE</code>\r
1282                                                                 <scientific_name>Drosophila sechellia</scientific_name>\r
1283                                                                 <common_name>Fruit fly</common_name>\r
1284                                                                 <rank>species</rank>\r
1285                                                               </taxonomy>\r
1286                                                             </clade>\r
1287                                                             <clade>\r
1288                                                               <taxonomy>\r
1289                                                                 <id provider="uniprot">7240</id>\r
1290                                                                 <code>DROSI</code>\r
1291                                                                 <scientific_name>Drosophila simulans</scientific_name>\r
1292                                                                 <common_name>Fruit fly</common_name>\r
1293                                                                 <rank>species</rank>\r
1294                                                               </taxonomy>\r
1295                                                             </clade>\r
1296                                                           </clade>\r
1297                                                           <clade>\r
1298                                                             <taxonomy>\r
1299                                                               <id provider="uniprot">7227</id>\r
1300                                                               <code>DROME</code>\r
1301                                                               <scientific_name>Drosophila melanogaster</scientific_name>\r
1302                                                               <common_name>Fruit fly</common_name>\r
1303                                                               <rank>species</rank>\r
1304                                                               <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
1305                                                             </taxonomy>\r
1306                                                           </clade>\r
1307                                                         </clade>\r
1308                                                         <clade>\r
1309                                                           <taxonomy>\r
1310                                                             <id provider="uniprot">7245</id>\r
1311                                                             <code>DROYA</code>\r
1312                                                             <scientific_name>Drosophila yakuba</scientific_name>\r
1313                                                             <common_name>Fruit fly</common_name>\r
1314                                                             <rank>species</rank>\r
1315                                                           </taxonomy>\r
1316                                                         </clade>\r
1317                                                       </clade>\r
1318                                                       <clade>\r
1319                                                         <taxonomy>\r
1320                                                           <id provider="uniprot">7220</id>\r
1321                                                           <code>DROER</code>\r
1322                                                           <scientific_name>Drosophila erecta</scientific_name>\r
1323                                                           <common_name>Fruit fly</common_name>\r
1324                                                           <rank>species</rank>\r
1325                                                         </taxonomy>\r
1326                                                       </clade>\r
1327                                                     </clade>\r
1328                                                     <clade>\r
1329                                                       <taxonomy>\r
1330                                                         <id provider="uniprot">7217</id>\r
1331                                                         <code>DROAN</code>\r
1332                                                         <scientific_name>Drosophila ananassae</scientific_name>\r
1333                                                         <common_name>Fruit fly</common_name>\r
1334                                                         <rank>species</rank>\r
1335                                                       </taxonomy>\r
1336                                                     </clade>\r
1337                                                   </clade>\r
1338                                                   <clade>\r
1339                                                     <taxonomy>\r
1340                                                       <id provider="uniprot">32358</id>\r
1341                                                       <scientific_name>pseudoobscura subgroup</scientific_name>\r
1342                                                     </taxonomy>\r
1343                                                     <clade>\r
1344                                                       <taxonomy>\r
1345                                                         <id provider="uniprot">7234</id>\r
1346                                                         <code>DROPE</code>\r
1347                                                         <scientific_name>Drosophila persimilis</scientific_name>\r
1348                                                         <common_name>Fruit fly</common_name>\r
1349                                                         <rank>species</rank>\r
1350                                                       </taxonomy>\r
1351                                                     </clade>\r
1352                                                     <clade>\r
1353                                                       <taxonomy>\r
1354                                                         <id provider="uniprot">46245</id>\r
1355                                                         <code>DROPS</code>\r
1356                                                         <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1357                                                         <common_name>Fruit fly</common_name>\r
1358                                                         <rank>subspecies</rank>\r
1359                                                         <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
1360                                                       </taxonomy>\r
1361                                                     </clade>\r
1362                                                   </clade>\r
1363                                                 </clade>\r
1364                                                 <clade>\r
1365                                                   <taxonomy>\r
1366                                                     <id provider="uniprot">7260</id>\r
1367                                                     <code>DROWI</code>\r
1368                                                     <scientific_name>Drosophila willistoni</scientific_name>\r
1369                                                     <common_name>Fruit fly</common_name>\r
1370                                                     <rank>species</rank>\r
1371                                                   </taxonomy>\r
1372                                                 </clade>\r
1373                                               </clade>\r
1374                                               <clade>\r
1375                                                 <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
1376                                                 <clade>\r
1377                                                   <taxonomy>\r
1378                                                     <scientific_name>Drosophila</scientific_name>\r
1379                                                     <rank>subgenus</rank>\r
1380                                                   </taxonomy>\r
1381                                                   <clade>\r
1382                                                     <taxonomy>\r
1383                                                       <id provider="uniprot">7230</id>\r
1384                                                       <code>DROMO</code>\r
1385                                                       <scientific_name>Drosophila mojavensis</scientific_name>\r
1386                                                       <common_name>Fruit fly</common_name>\r
1387                                                       <rank>species</rank>\r
1388                                                     </taxonomy>\r
1389                                                   </clade>\r
1390                                                   <clade>\r
1391                                                     <taxonomy>\r
1392                                                       <id provider="uniprot">7244</id>\r
1393                                                       <code>DROVI</code>\r
1394                                                       <scientific_name>Drosophila virilis</scientific_name>\r
1395                                                       <common_name>Fruit fly</common_name>\r
1396                                                       <rank>species</rank>\r
1397                                                     </taxonomy>\r
1398                                                   </clade>\r
1399                                                 </clade>\r
1400                                                 <clade>\r
1401                                                   <taxonomy>\r
1402                                                     <id provider="uniprot">7222</id>\r
1403                                                     <code>DROGR</code>\r
1404                                                     <scientific_name>Drosophila grimshawi</scientific_name>\r
1405                                                     <common_name>Fruit fly</common_name>\r
1406                                                     <synonym>Idiomyia grimshawi</synonym>\r
1407                                                     <rank>species</rank>\r
1408                                                     <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
1409                                                   </taxonomy>\r
1410                                                 </clade>\r
1411                                               </clade>\r
1412                                             </clade>\r
1413                                             <clade>\r
1414                                               <taxonomy>\r
1415                                                 <id provider="uniprot">7157</id>\r
1416                                                 <scientific_name>Culicidae</scientific_name>\r
1417                                                 <common_name>mosquitos</common_name>\r
1418                                                 <rank>family</rank>\r
1419                                               </taxonomy>\r
1420                                               <clade>\r
1421                                                 <taxonomy>\r
1422                                                   <id provider="uniprot">7159</id>\r
1423                                                   <code>AEDAE</code>\r
1424                                                   <scientific_name>Aedes aegypti</scientific_name>\r
1425                                                   <common_name>Yellowfever mosquito</common_name>\r
1426                                                   <synonym>Culex aegypti</synonym>\r
1427                                                   <rank>species</rank>\r
1428                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1429                                                 </taxonomy>\r
1430                                               </clade>\r
1431                                               <clade>\r
1432                                                 <taxonomy>\r
1433                                                   <id provider="uniprot">7165</id>\r
1434                                                   <code>ANOGA</code>\r
1435                                                   <scientific_name>Anopheles gambiae</scientific_name>\r
1436                                                   <common_name>African malaria mosquito</common_name>\r
1437                                                   <rank>species</rank>\r
1438                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1439                                                 </taxonomy>\r
1440                                               </clade>\r
1441                                               <clade>\r
1442                                                 <taxonomy>\r
1443                                                   <id provider="uniprot">7175</id>\r
1444                                                   <code>CULPI</code>\r
1445                                                   <scientific_name>Culex pipiens</scientific_name>\r
1446                                                   <common_name>House mosquito</common_name>\r
1447                                                   <rank>species</rank>\r
1448                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>\r
1449                                                 </taxonomy>\r
1450                                               </clade>\r
1451                                             </clade>\r
1452                                           </clade>\r
1453                                           <clade>\r
1454                                             <taxonomy>\r
1455                                               <id provider="uniprot">7091</id>\r
1456                                               <code>BOMMO</code>\r
1457                                               <scientific_name>Bombyx mori</scientific_name>\r
1458                                               <common_name>Silk moth</common_name>\r
1459                                               <rank>species</rank>\r
1460                                               <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>\r
1461                                             </taxonomy>\r
1462                                           </clade>\r
1463                                         </clade>\r
1464                                         <clade>\r
1465                                           <taxonomy>\r
1466                                             <id provider="uniprot">7400</id>\r
1467                                             <scientific_name>Apocrita</scientific_name>\r
1468                                             <common_name>wasps, ants and bees</common_name>\r
1469                                           </taxonomy>\r
1470                                           <clade>\r
1471                                             <taxonomy>\r
1472                                               <id provider="uniprot">7434</id>\r
1473                                               <scientific_name>Aculeata</scientific_name>\r
1474                                               <rank>suborder</rank>\r
1475                                             </taxonomy>\r
1476                                             <clade>\r
1477                                               <taxonomy>\r
1478                                                 <id provider="uniprot">7460</id>\r
1479                                                 <code>APIME</code>\r
1480                                                 <scientific_name>Apis mellifera</scientific_name>\r
1481                                                 <common_name>Honeybee</common_name>\r
1482                                                 <rank>species</rank>\r
1483                                                 <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
1484                                               </taxonomy>\r
1485                                             </clade>\r
1486                                             <clade>\r
1487                                               <taxonomy>\r
1488                                                 <id provider="uniprot">12957</id>\r
1489                                                 <code>ATTCE</code>\r
1490                                                 <scientific_name>Atta cephalotes</scientific_name>\r
1491                                                 <authority>Linnaeus, 1758</authority>\r
1492                                                 <common_name>Leafcutter ant</common_name>\r
1493                                                 <rank>species</rank>\r
1494                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
1495                                               </taxonomy>\r
1496                                             </clade>\r
1497                                           </clade>\r
1498                                           <clade>\r
1499                                             <taxonomy>\r
1500                                               <id provider="uniprot">7425</id>\r
1501                                               <code>NASVI</code>\r
1502                                               <scientific_name>Nasonia vitripennis</scientific_name>\r
1503                                               <common_name>Parasitic wasp</common_name>\r
1504                                               <rank>species</rank>\r
1505                                               <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
1506                                             </taxonomy>\r
1507                                           </clade>\r
1508                                         </clade>\r
1509                                       </clade>\r
1510                                       <clade>\r
1511                                         <taxonomy>\r
1512                                           <id provider="uniprot">7070</id>\r
1513                                           <code>TRICA</code>\r
1514                                           <scientific_name>Tribolium castaneum</scientific_name>\r
1515                                           <common_name>Red flour beetle</common_name>\r
1516                                           <rank>species</rank>\r
1517                                           <uri>http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg</uri>\r
1518                                         </taxonomy>\r
1519                                       </clade>\r
1520                                     </clade>\r
1521                                     <clade>\r
1522                                       <taxonomy>\r
1523                                         <id provider="uniprot">33342</id>\r
1524                                         <scientific_name>Paraneoptera</scientific_name>\r
1525                                         <rank>infraclass</rank>\r
1526                                       </taxonomy>\r
1527                                       <clade>\r
1528                                         <taxonomy>\r
1529                                           <id provider="uniprot">7524</id>\r
1530                                           <scientific_name>Hemiptera</scientific_name>\r
1531                                           <rank>order</rank>\r
1532                                         </taxonomy>\r
1533                                         <clade>\r
1534                                           <taxonomy>\r
1535                                             <id provider="uniprot">7029</id>\r
1536                                             <code>ACYPI</code>\r
1537                                             <scientific_name>Acyrthosiphon pisum</scientific_name>\r
1538                                             <common_name>Pea aphid</common_name>\r
1539                                             <rank>species</rank>\r
1540                                             <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
1541                                           </taxonomy>\r
1542                                         </clade>\r
1543                                         <clade>\r
1544                                           <taxonomy>\r
1545                                             <id provider="uniprot">13249</id>\r
1546                                             <code>RHOPR</code>\r
1547                                             <scientific_name>Rhodnius prolixus</scientific_name>\r
1548                                             <common_name>Triatomid bug</common_name>\r
1549                                             <rank>species</rank>\r
1550                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
1551                                           </taxonomy>\r
1552                                         </clade>\r
1553                                       </clade>\r
1554                                       <clade>\r
1555                                         <taxonomy>\r
1556                                           <id provider="uniprot">121224</id>\r
1557                                           <code>PEDHC</code>\r
1558                                           <scientific_name>Pediculus humanus subsp. corporis</scientific_name>\r
1559                                           <common_name>Body louse</common_name>\r
1560                                           <rank>subspecies</rank>\r
1561                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>\r
1562                                         </taxonomy>\r
1563                                       </clade>\r
1564                                     </clade>\r
1565                                   </clade>\r
1566                                   <clade>\r
1567                                     <taxonomy>\r
1568                                       <id provider="uniprot">6658</id>\r
1569                                       <scientific_name>Branchiopoda</scientific_name>\r
1570                                       <rank>class</rank>\r
1571                                     </taxonomy>\r
1572                                     <clade>\r
1573                                       <taxonomy>\r
1574                                         <id provider="uniprot">6661</id>\r
1575                                         <code>ARTSF</code>\r
1576                                         <scientific_name>Artemia franciscana</scientific_name>\r
1577                                         <common_name>Brine shrimp</common_name>\r
1578                                         <synonym>Artemia sanfranciscana</synonym>\r
1579                                         <rank>species</rank>\r
1580                                         <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>\r
1581                                       </taxonomy>\r
1582                                     </clade>\r
1583                                     <clade>\r
1584                                       <taxonomy>\r
1585                                         <id provider="uniprot">6669</id>\r
1586                                         <code>DAPPU</code>\r
1587                                         <scientific_name>Daphnia pulex</scientific_name>\r
1588                                         <common_name>Water flea</common_name>\r
1589                                         <rank>species</rank>\r
1590                                         <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
1591                                       </taxonomy>\r
1592                                     </clade>\r
1593                                   </clade>\r
1594                                 </clade>\r
1595                                 <clade>\r
1596                                   <taxonomy>\r
1597                                     <id provider="uniprot">61985</id>\r
1598                                     <scientific_name>Myriapoda</scientific_name>\r
1599                                     <rank>subphylum</rank>\r
1600                                   </taxonomy>\r
1601                                   <clade>\r
1602                                     <taxonomy>\r
1603                                       <id provider="uniprot">7553</id>\r
1604                                       <scientific_name>Diplopoda</scientific_name>\r
1605                                       <common_name>millipedes</common_name>\r
1606                                       <rank>class</rank>\r
1607                                     </taxonomy>\r
1608                                     <clade>\r
1609                                       <taxonomy>\r
1610                                         <id provider="uniprot">118561</id>\r
1611                                         <scientific_name>Helminthomorpha</scientific_name>\r
1612                                         <rank>subclass</rank>\r
1613                                       </taxonomy>\r
1614                                       <clade>\r
1615                                         <taxonomy>\r
1616                                           <id provider="uniprot">364406</id>\r
1617                                           <scientific_name>Antrokoreana gracilipes</scientific_name>\r
1618                                           <rank>species</rank>\r
1619                                           <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>\r
1620                                         </taxonomy>\r
1621                                       </clade>\r
1622                                       <clade>\r
1623                                         <taxonomy>\r
1624                                           <id provider="uniprot">174156</id>\r
1625                                           <code>NARAN</code>\r
1626                                           <scientific_name>Narceus annularis</scientific_name>\r
1627                                           <common_name>Millipede</common_name>\r
1628                                           <rank>species</rank>\r
1629                                           <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
1630                                         </taxonomy>\r
1631                                       </clade>\r
1632                                     </clade>\r
1633                                     <clade>\r
1634                                       <taxonomy>\r
1635                                         <id provider="uniprot">52428</id>\r
1636                                         <scientific_name>Polyxenus lagurus</scientific_name>\r
1637                                         <common_name>bristly millipede</common_name>\r
1638                                         <rank>species</rank>\r
1639                                         <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
1640                                       </taxonomy>\r
1641                                     </clade>\r
1642                                   </clade>\r
1643                                   <clade>\r
1644                                     <taxonomy>\r
1645                                       <id provider="uniprot">7540</id>\r
1646                                       <scientific_name>Chilopoda</scientific_name>\r
1647                                       <common_name>centipedes</common_name>\r
1648                                       <rank>class</rank>\r
1649                                     </taxonomy>\r
1650                                     <clade>\r
1651                                       <taxonomy>\r
1652                                         <id provider="uniprot">29022</id>\r
1653                                         <code>SCUCO</code>\r
1654                                         <scientific_name>Scutigera coleoptrata</scientific_name>\r
1655                                         <common_name>House centipede</common_name>\r
1656                                         <rank>species</rank>\r
1657                                         <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
1658                                       </taxonomy>\r
1659                                     </clade>\r
1660                                     <clade>\r
1661                                       <taxonomy>\r
1662                                         <id provider="uniprot">126957</id>\r
1663                                         <scientific_name>Strigamia maritima</scientific_name>\r
1664                                         <rank>species</rank>\r
1665                                         <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
1666                                       </taxonomy>\r
1667                                     </clade>\r
1668                                   </clade>\r
1669                                 </clade>\r
1670                               </clade>\r
1671                               <clade>\r
1672                                 <taxonomy>\r
1673                                   <id provider="uniprot">6945</id>\r
1674                                   <code>IXOSC</code>\r
1675                                   <scientific_name>Ixodes scapularis</scientific_name>\r
1676                                   <common_name>Black-legged tick</common_name>\r
1677                                   <synonym>Deer tick</synonym>\r
1678                                   <rank>species</rank>\r
1679                                   <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
1680                                 </taxonomy>\r
1681                               </clade>\r
1682                             </clade>\r
1683                             <clade>\r
1684                               <taxonomy>\r
1685                                 <id provider="uniprot">119089</id>\r
1686                                 <scientific_name>Chromadorea</scientific_name>\r
1687                                 <rank>class</rank>\r
1688                               </taxonomy>\r
1689                               <reference doi="10.1038/32160">\r
1690                               </reference>\r
1691                               <clade>\r
1692                                 <name>nematode Clade V</name>\r
1693                                 <clade>\r
1694                                   <taxonomy>\r
1695                                     <id provider="uniprot">6237</id>\r
1696                                     <scientific_name>Caenorhabditis</scientific_name>\r
1697                                     <rank>genus</rank>\r
1698                                   </taxonomy>\r
1699                                   <reference doi="10.1073/pnas.0403094101">\r
1700                                     <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>\r
1701                                   </reference>\r
1702                                   <clade>\r
1703                                     <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>\r
1704                                     <clade>\r
1705                                       <name>CAEBR &amp; CAERE &amp; CAEBE</name>\r
1706                                       <clade>\r
1707                                         <name>CAEBR &amp; CAERE</name>\r
1708                                         <clade>\r
1709                                           <taxonomy>\r
1710                                             <id provider="uniprot">6238</id>\r
1711                                             <code>CAEBR</code>\r
1712                                             <scientific_name>Caenorhabditis briggsae</scientific_name>\r
1713                                             <rank>species</rank>\r
1714                                             <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>\r
1715                                           </taxonomy>\r
1716                                         </clade>\r
1717                                         <clade>\r
1718                                           <taxonomy>\r
1719                                             <id provider="uniprot">31234</id>\r
1720                                             <code>CAERE</code>\r
1721                                             <scientific_name>Caenorhabditis remanei</scientific_name>\r
1722                                             <synonym>Caenorhabditis vulgaris</synonym>\r
1723                                             <rank>species</rank>\r
1724                                             <uri>http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg</uri>\r
1725                                           </taxonomy>\r
1726                                         </clade>\r
1727                                       </clade>\r
1728                                       <clade>\r
1729                                         <taxonomy>\r
1730                                           <id provider="uniprot">135651</id>\r
1731                                           <code>CAEBE</code>\r
1732                                           <scientific_name>Caenorhabditis brenneri</scientific_name>\r
1733                                           <common_name>Nematode worm</common_name>\r
1734                                           <synonym>Caenorhabditis CB5161</synonym>\r
1735                                           <rank>species</rank>\r
1736                                         </taxonomy>\r
1737                                       </clade>\r
1738                                     </clade>\r
1739                                     <clade>\r
1740                                       <taxonomy>\r
1741                                         <id provider="uniprot">6239</id>\r
1742                                         <code>CAEEL</code>\r
1743                                         <scientific_name>Caenorhabditis elegans</scientific_name>\r
1744                                         <rank>species</rank>\r
1745                                         <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>\r
1746                                       </taxonomy>\r
1747                                     </clade>\r
1748                                   </clade>\r
1749                                   <clade>\r
1750                                     <taxonomy>\r
1751                                       <id provider="uniprot">281687</id>\r
1752                                       <code>CAEJA</code>\r
1753                                       <scientific_name>Caenorhabditis japonica</scientific_name>\r
1754                                       <rank>species</rank>\r
1755                                     </taxonomy>\r
1756                                   </clade>\r
1757                                 </clade>\r
1758                                 <clade>\r
1759                                   <taxonomy>\r
1760                                     <id provider="uniprot">54126</id>\r
1761                                     <code>PRIPA</code>\r
1762                                     <scientific_name>Pristionchus pacificus</scientific_name>\r
1763                                     <rank>species</rank>\r
1764                                     <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>\r
1765                                   </taxonomy>\r
1766                                 </clade>\r
1767                               </clade>\r
1768                               <clade>\r
1769                                 <taxonomy>\r
1770                                   <id provider="uniprot">6279</id>\r
1771                                   <code>BRUMA</code>\r
1772                                   <scientific_name>Brugia malayi</scientific_name>\r
1773                                   <common_name>Filarial nematode worm</common_name>\r
1774                                   <rank>species</rank>\r
1775                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>\r
1776                                 </taxonomy>\r
1777                               </clade>\r
1778                             </clade>\r
1779                           </clade>\r
1780                           <clade>\r
1781                             <name>Lophotrochozoa</name>\r
1782                             <clade>\r
1783                               <name>Annelida &amp; Mollusca</name>\r
1784                               <clade>\r
1785                                 <taxonomy>\r
1786                                   <id provider="uniprot">6447</id>\r
1787                                   <scientific_name>Mollusca</scientific_name>\r
1788                                   <rank>phylum</rank>\r
1789                                 </taxonomy>\r
1790                                 <clade>\r
1791                                   <taxonomy>\r
1792                                     <id provider="uniprot">6448</id>\r
1793                                     <scientific_name>Gastropoda</scientific_name>\r
1794                                     <rank>class</rank>\r
1795                                   </taxonomy>\r
1796                                   <clade>\r
1797                                     <taxonomy>\r
1798                                       <id provider="uniprot">6500</id>\r
1799                                       <code>APLCA</code>\r
1800                                       <scientific_name>Aplysia californica</scientific_name>\r
1801                                       <common_name>California sea hare</common_name>\r
1802                                       <rank>species</rank>\r
1803                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>\r
1804                                     </taxonomy>\r
1805                                   </clade>\r
1806                                   <clade>\r
1807                                     <taxonomy>\r
1808                                       <id provider="uniprot">225164</id>\r
1809                                       <code>LOTGI</code>\r
1810                                       <scientific_name>Lottia gigantea</scientific_name>\r
1811                                       <common_name>Owl limpet</common_name>\r
1812                                       <rank>species</rank>\r
1813                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>\r
1814                                     </taxonomy>\r
1815                                   </clade>\r
1816                                 </clade>\r
1817                                 <clade>\r
1818                                   <taxonomy>\r
1819                                     <id provider="uniprot">6545</id>\r
1820                                     <scientific_name>Pteriomorphia</scientific_name>\r
1821                                     <synonym>Pteriomorpha</synonym>\r
1822                                     <rank>subclass</rank>\r
1823                                   </taxonomy>\r
1824                                   <clade>\r
1825                                     <taxonomy>\r
1826                                       <id provider="uniprot">29159</id>\r
1827                                       <code>CRAGI</code>\r
1828                                       <scientific_name>Crassostrea gigas</scientific_name>\r
1829                                       <authority>Thunberg, 1793</authority>\r
1830                                       <common_name>Pacific oyster</common_name>\r
1831                                       <synonym>Crassotrea gigas</synonym>\r
1832                                       <synonym>Crassostrea angulata</synonym>\r
1833                                       <synonym>Ostrea gigas</synonym>\r
1834                                       <rank>species</rank>\r
1835                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>\r
1836                                     </taxonomy>\r
1837                                   </clade>\r
1838                                   <clade>\r
1839                                     <taxonomy>\r
1840                                       <id provider="uniprot">50426</id>\r
1841                                       <code>PINFU</code>\r
1842                                       <scientific_name>Pinctada fucata</scientific_name>\r
1843                                       <common_name>Pearl oyster</common_name>\r
1844                                       <rank>species</rank>\r
1845                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>\r
1846                                     </taxonomy>\r
1847                                   </clade>\r
1848                                 </clade>\r
1849                               </clade>\r
1850                               <clade>\r
1851                                 <taxonomy>\r
1852                                   <id provider="uniprot">6340</id>\r
1853                                   <scientific_name>Annelida</scientific_name>\r
1854                                   <rank>phylum</rank>\r
1855                                 </taxonomy>\r
1856                                 <clade>\r
1857                                   <taxonomy>\r
1858                                     <id provider="uniprot">283909</id>\r
1859                                     <code>CTEXX</code>\r
1860                                     <scientific_name>Capitella teleta</scientific_name>\r
1861                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>\r
1862                                     <synonym>Capitella sp. I</synonym>\r
1863                                     <rank>species</rank>\r
1864                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>\r
1865                                   </taxonomy>\r
1866                                 </clade>\r
1867                                 <clade>\r
1868                                   <taxonomy>\r
1869                                     <id provider="uniprot">6412</id>\r
1870                                     <code>HELRO</code>\r
1871                                     <scientific_name>Helobdella robusta</scientific_name>\r
1872                                     <common_name>Californian leech</common_name>\r
1873                                     <rank>species</rank>\r
1874                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>\r
1875                                   </taxonomy>\r
1876                                 </clade>\r
1877                               </clade>\r
1878                             </clade>\r
1879                             <clade>\r
1880                               <taxonomy>\r
1881                                 <id provider="uniprot">6157</id>\r
1882                                 <scientific_name>Platyhelminthes</scientific_name>\r
1883                                 <rank>phylum</rank>\r
1884                               </taxonomy>\r
1885                               <clade>\r
1886                                 <taxonomy>\r
1887                                   <id provider="uniprot">6183</id>\r
1888                                   <code>SCHMA</code>\r
1889                                   <scientific_name>Schistosoma mansoni</scientific_name>\r
1890                                   <common_name>Blood fluke</common_name>\r
1891                                   <rank>species</rank>\r
1892                                   <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>\r
1893                                 </taxonomy>\r
1894                               </clade>\r
1895                               <clade>\r
1896                                 <taxonomy>\r
1897                                   <id provider="uniprot">79327</id>\r
1898                                   <code>SCHMD</code>\r
1899                                   <scientific_name>Schmidtea mediterranea</scientific_name>\r
1900                                   <common_name>Freshwater planarian flatworm</common_name>\r
1901                                   <rank>species</rank>\r
1902                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>\r
1903                                 </taxonomy>\r
1904                               </clade>\r
1905                             </clade>\r
1906                           </clade>\r
1907                         </clade>\r
1908                       </clade>\r
1909                       <clade>\r
1910                         <name>Cnidaria</name>\r
1911                         <taxonomy>\r
1912                           <id provider="uniprot">6073</id>\r
1913                           <scientific_name>Cnidaria</scientific_name>\r
1914                           <rank>phylum</rank>\r
1915                         </taxonomy>\r
1916                         <clade>\r
1917                           <taxonomy>\r
1918                             <id provider="uniprot">6102</id>\r
1919                             <scientific_name>Hexacorallia</scientific_name>\r
1920                             <synonym>Ceriantipatharia</synonym>\r
1921                             <synonym>Zoantharia</synonym>\r
1922                             <rank>subclass</rank>\r
1923                           </taxonomy>\r
1924                           <clade>\r
1925                             <taxonomy>\r
1926                               <id provider="uniprot">70779</id>\r
1927                               <code>ACRDI</code>\r
1928                               <scientific_name>Acropora digitifera</scientific_name>\r
1929                               <common_name>Staghorn coral</common_name>\r
1930                               <rank>species</rank>\r
1931                               <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>\r
1932                             </taxonomy>\r
1933                           </clade>\r
1934                           <clade>\r
1935                             <taxonomy>\r
1936                               <id provider="uniprot">45351</id>\r
1937                               <code>NEMVE</code>\r
1938                               <scientific_name>Nematostella vectensis</scientific_name>\r
1939                               <common_name>Starlet sea anemone</common_name>\r
1940                               <rank>species</rank>\r
1941                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>\r
1942                             </taxonomy>\r
1943                           </clade>\r
1944                         </clade>\r
1945                         <clade>\r
1946                           <taxonomy>\r
1947                             <id provider="uniprot">6085</id>\r
1948                             <code>HMAXX</code>\r
1949                             <scientific_name>Hydra magnipapillata</scientific_name>\r
1950                             <authority>Ito, 1947</authority>\r
1951                             <rank>species</rank>\r
1952                             <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>\r
1953                           </taxonomy>\r
1954                         </clade>\r
1955                       </clade>\r
1956                     </clade>\r
1957                     <clade>\r
1958                       <taxonomy>\r
1959                         <id provider="uniprot">10228</id>\r
1960                         <code>TRIAD</code>\r
1961                         <scientific_name>Trichoplax adhaerens</scientific_name>\r
1962                         <synonym>Trichoplax reptans</synonym>\r
1963                         <rank>species</rank>\r
1964                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>\r
1965                       </taxonomy>\r
1966                       <reference doi="10.1073/pnas.0602076103">\r
1967                       </reference>\r
1968                     </clade>\r
1969                   </clade>\r
1970                   <clade>\r
1971                     <taxonomy>\r
1972                       <id provider="uniprot">27923</id>\r
1973                       <code>MNELE</code>\r
1974                       <scientific_name>Mnemiopsis leidyi</scientific_name>\r
1975                       <authority>A. gassiz, 1865</authority>\r
1976                       <common_name>Sea walnut</common_name>\r
1977                       <rank>species</rank>\r
1978                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>\r
1979                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>\r
1980                     </taxonomy>\r
1981                   </clade>\r
1982                   <clade>\r
1983                     <taxonomy>\r
1984                       <id provider="uniprot">400682</id>\r
1985                       <code>AMPQE</code>\r
1986                       <scientific_name>Amphimedon queenslandica</scientific_name>\r
1987                       <authority>Hooper &amp; Van Soest, 2006</authority>\r
1988                       <common_name>Sponge</common_name>\r
1989                       <synonym>Reniera sp. JGI-2005</synonym>\r
1990                       <rank>species</rank>\r
1991                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>\r
1992                     </taxonomy>\r
1993                   </clade>\r
1994                 </clade>\r
1995                 <clade>\r
1996                   <taxonomy>\r
1997                     <id provider="uniprot">81524</id>\r
1998                     <scientific_name>Codonosigidae</scientific_name>\r
1999                     <rank>family</rank>\r
2000                   </taxonomy>\r
2001                   <clade>\r
2002                     <taxonomy>\r
2003                       <id provider="uniprot">81824</id>\r
2004                       <code>MONBE</code>\r
2005                       <scientific_name>Monosiga brevicollis</scientific_name>\r
2006                       <common_name>Choanoflagellate</common_name>\r
2007                       <rank>species</rank>\r
2008                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>\r
2009                     </taxonomy>\r
2010                   </clade>\r
2011                   <clade>\r
2012                     <taxonomy>\r
2013                       <id provider="uniprot">946362</id>\r
2014                       <code>SALS5</code>\r
2015                       <scientific_name>Salpingoeca rosetta</scientific_name>\r
2016                       <synonym>Proterospongia sp. ATCC 50818</synonym>\r
2017                       <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
2018                       <rank>species</rank>\r
2019                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>\r
2020                     </taxonomy>\r
2021                   </clade>\r
2022                 </clade>\r
2023               </clade>\r
2024               <clade>\r
2025                 <name>Ichthyophonida &amp; Filasterea</name>\r
2026                 <clade>\r
2027                   <taxonomy>\r
2028                     <id provider="uniprot">198625</id>\r
2029                     <scientific_name>Ichthyophonida</scientific_name>\r
2030                     <rank>order</rank>\r
2031                   </taxonomy>\r
2032                   <clade>\r
2033                     <taxonomy>\r
2034                       <id provider="uniprot">4881</id>\r
2035                       <code>AMOPA</code>\r
2036                       <scientific_name>Amoebidium parasiticum</scientific_name>\r
2037                       <rank>species</rank>\r
2038                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>\r
2039                     </taxonomy>\r
2040                   </clade>\r
2041                   <clade>\r
2042                     <taxonomy>\r
2043                       <id provider="uniprot">72019</id>\r
2044                       <code>SARXX</code>\r
2045                       <scientific_name>Sphaeroforma arctica</scientific_name>\r
2046                       <rank>species</rank>\r
2047                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
2048                     </taxonomy>\r
2049                   </clade>\r
2050                 </clade>\r
2051                 <clade>\r
2052                   <taxonomy>\r
2053                     <scientific_name>Filasterea</scientific_name>\r
2054                   </taxonomy>\r
2055                   <reference doi="10.1371/journal.pone.0002098">\r
2056                   </reference>\r
2057                   <reference>\r
2058                   </reference>\r
2059                   <clade>\r
2060                     <taxonomy>\r
2061                       <id provider="uniprot">595528</id>\r
2062                       <code>CAPO3</code>\r
2063                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>\r
2064                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>\r
2065                     </taxonomy>\r
2066                   </clade>\r
2067                   <clade>\r
2068                     <taxonomy>\r
2069                       <id provider="uniprot">134558</id>\r
2070                       <scientific_name>Ministeria vibrans</scientific_name>\r
2071                       <rank>species</rank>\r
2072                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>\r
2073                     </taxonomy>\r
2074                   </clade>\r
2075                 </clade>\r
2076               </clade>\r
2077             </clade>\r
2078             <clade>\r
2079               <taxonomy>\r
2080                 <scientific_name>Holomycota</scientific_name>\r
2081                 <synonym>Nucletmycea</synonym>\r
2082               </taxonomy>\r
2083               <clade>\r
2084                 <taxonomy>\r
2085                   <id provider="uniprot">4751</id>\r
2086                   <scientific_name>Fungi</scientific_name>\r
2087                   <rank>kingdom</rank>\r
2088                 </taxonomy>\r
2089                 <clade>\r
2090                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
2091                   <clade>\r
2092                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
2093                     <clade>\r
2094                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
2095                       <clade>\r
2096                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
2097                         <clade>\r
2098                           <name>Dikarya &amp; Mucoromycotina</name>\r
2099                           <clade>\r
2100                             <taxonomy>\r
2101                               <id provider="uniprot">451864</id>\r
2102                               <scientific_name>Dikarya</scientific_name>\r
2103                               <rank>subkingdom</rank>\r
2104                             </taxonomy>\r
2105                             <reference doi="10.1038/nature05110">\r
2106                             </reference>\r
2107                             <reference>\r
2108                             </reference>\r
2109                             <clade>\r
2110                               <taxonomy>\r
2111                                 <id provider="uniprot">4890</id>\r
2112                                 <scientific_name>Ascomycota</scientific_name>\r
2113                                 <rank>phylum</rank>\r
2114                               </taxonomy>\r
2115                               <clade>\r
2116                                 <name>Pezizomycotina &amp; Saccharomycetales</name>\r
2117                                 <clade>\r
2118                                   <taxonomy>\r
2119                                     <id provider="uniprot">147538</id>\r
2120                                     <scientific_name>Pezizomycotina</scientific_name>\r
2121                                     <synonym>Euascomycota</synonym>\r
2122                                     <rank>subphylum</rank>\r
2123                                   </taxonomy>\r
2124                                   <reference doi="0.3852/mycologia.98.6.1018">\r
2125                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
2126                                   </reference>\r
2127                                   <reference>\r
2128                                   </reference>\r
2129                                   <clade>\r
2130                                     <taxonomy>\r
2131                                       <id provider="uniprot">716546</id>\r
2132                                       <scientific_name>Leotiomyceta</scientific_name>\r
2133                                     </taxonomy>\r
2134                                     <clade>\r
2135                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
2136                                       <clade>\r
2137                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
2138                                         <clade>\r
2139                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
2140                                           <clade>\r
2141                                             <taxonomy>\r
2142                                               <id provider="uniprot">715989</id>\r
2143                                               <scientific_name>Sordariomyceta</scientific_name>\r
2144                                             </taxonomy>\r
2145                                             <clade>\r
2146                                               <taxonomy>\r
2147                                                 <id provider="uniprot">147550</id>\r
2148                                                 <scientific_name>Sordariomycetes</scientific_name>\r
2149                                                 <rank>class</rank>\r
2150                                               </taxonomy>\r
2151                                               <clade>\r
2152                                                 <name>Magnaporthales &amp; Hypocreales</name>\r
2153                                                 <clade>\r
2154                                                   <taxonomy>\r
2155                                                     <id provider="uniprot">5125</id>\r
2156                                                     <scientific_name>Hypocreales</scientific_name>\r
2157                                                     <rank>order</rank>\r
2158                                                   </taxonomy>\r
2159                                                   <clade>\r
2160                                                     <taxonomy>\r
2161                                                       <id provider="uniprot">398408</id>\r
2162                                                       <code>AALXX</code>\r
2163                                                       <scientific_name>Acremonium alcalophilum</scientific_name>\r
2164                                                       <rank>species</rank>\r
2165                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
2166                                                     </taxonomy>\r
2167                                                   </clade>\r
2168                                                   <clade>\r
2169                                                     <taxonomy>\r
2170                                                       <id provider="uniprot">229533</id>\r
2171                                                       <code>GIBZE</code>\r
2172                                                       <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>\r
2173                                                       <common_name>Wheat head blight fungus</common_name>\r
2174                                                       <synonym>Fusarium graminearum</synonym>\r
2175                                                       <synonym>Gibberella zeae PH-1</synonym>\r
2176                                                       <rank>strain</rank>\r
2177                                                       <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>\r
2178                                                     </taxonomy>\r
2179                                                   </clade>\r
2180                                                   <clade>\r
2181                                                     <taxonomy>\r
2182                                                       <id provider="uniprot">413071</id>\r
2183                                                       <code>HYPVG</code>\r
2184                                                       <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>\r
2185                                                       <synonym>Trichoderma virens</synonym>\r
2186                                                       <synonym>Gliocladium flavofuscum</synonym>\r
2187                                                       <synonym>Trichoderma virens Gv29-8</synonym>\r
2188                                                       <synonym>Gliocladium virens</synonym>\r
2189                                                       <rank>strain</rank>\r
2190                                                       <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>\r
2191                                                     </taxonomy>\r
2192                                                   </clade>\r
2193                                                 </clade>\r
2194                                                 <clade>\r
2195                                                   <taxonomy>\r
2196                                                     <id provider="uniprot">148305</id>\r
2197                                                     <code>MAGGR</code>\r
2198                                                     <scientific_name>Magnaporthe grisea</scientific_name>\r
2199                                                     <common_name>Rice blast fungus</common_name>\r
2200                                                     <synonym>Pyricularia grisea</synonym>\r
2201                                                     <rank>species</rank>\r
2202                                                     <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>\r
2203                                                   </taxonomy>\r
2204                                                 </clade>\r
2205                                               </clade>\r
2206                                               <clade>\r
2207                                                 <taxonomy>\r
2208                                                   <id provider="uniprot">5139</id>\r
2209                                                   <scientific_name>Sordariales</scientific_name>\r
2210                                                   <rank>order</rank>\r
2211                                                 </taxonomy>\r
2212                                                 <clade>\r
2213                                                   <taxonomy>\r
2214                                                     <id provider="uniprot">35718</id>\r
2215                                                     <scientific_name>Chaetomiaceae</scientific_name>\r
2216                                                     <rank>family</rank>\r
2217                                                   </taxonomy>\r
2218                                                   <clade>\r
2219                                                     <taxonomy>\r
2220                                                       <id provider="uniprot">35719</id>\r
2221                                                       <scientific_name>Thielavia</scientific_name>\r
2222                                                       <rank>genus</rank>\r
2223                                                     </taxonomy>\r
2224                                                     <clade>\r
2225                                                       <taxonomy>\r
2226                                                         <id provider="uniprot">573729</id>\r
2227                                                         <code>THIHA</code>\r
2228                                                         <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>\r
2229                                                         <authority>(Apinis) Oorschot 1977</authority>\r
2230                                                         <synonym>Sporotrichum thermophilum</synonym>\r
2231                                                         <synonym>Myceliophthora thermophila</synonym>\r
2232                                                         <rank>species</rank>\r
2233                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
2234                                                       </taxonomy>\r
2235                                                     </clade>\r
2236                                                     <clade>\r
2237                                                       <taxonomy>\r
2238                                                         <id provider="uniprot">578455</id>\r
2239                                                         <code>THITE</code>\r
2240                                                         <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>\r
2241                                                         <synonym>Acremonium alabamense</synonym>\r
2242                                                         <synonym>Thielavia terrestris NRRL 8126</synonym>\r
2243                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
2244                                                       </taxonomy>\r
2245                                                     </clade>\r
2246                                                   </clade>\r
2247                                                   <clade>\r
2248                                                     <taxonomy>\r
2249                                                       <id provider="uniprot">306901</id>\r
2250                                                       <code>CHAGB</code>\r
2251                                                       <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>\r
2252                                                       <authority>Kunze 1817</authority>\r
2253                                                       <common_name>Soil fungus</common_name>\r
2254                                                       <rank>strain</rank>\r
2255                                                     </taxonomy>\r
2256                                                   </clade>\r
2257                                                 </clade>\r
2258                                                 <clade>\r
2259                                                   <taxonomy>\r
2260                                                     <id provider="uniprot">367110</id>\r
2261                                                     <code>NEUCR</code>\r
2262                                                     <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>\r
2263                                                     <rank>strain</rank>\r
2264                                                   </taxonomy>\r
2265                                                 </clade>\r
2266                                               </clade>\r
2267                                             </clade>\r
2268                                             <clade>\r
2269                                               <taxonomy>\r
2270                                                 <id provider="uniprot">147548</id>\r
2271                                                 <scientific_name>Leotiomycetes</scientific_name>\r
2272                                                 <rank>class</rank>\r
2273                                               </taxonomy>\r
2274                                               <clade>\r
2275                                                 <taxonomy>\r
2276                                                   <id provider="uniprot">28983</id>\r
2277                                                   <scientific_name>Sclerotiniaceae</scientific_name>\r
2278                                                   <rank>family</rank>\r
2279                                                 </taxonomy>\r
2280                                                 <clade>\r
2281                                                   <taxonomy>\r
2282                                                     <id provider="uniprot">999810</id>\r
2283                                                     <code>BOTF4</code>\r
2284                                                     <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>\r
2285                                                     <common_name>Noble rot fungus</common_name>\r
2286                                                     <synonym>Botrytis cinerea</synonym>\r
2287                                                     <rank>strain</rank>\r
2288                                                   </taxonomy>\r
2289                                                 </clade>\r
2290                                                 <clade>\r
2291                                                   <taxonomy>\r
2292                                                     <id provider="uniprot">665079</id>\r
2293                                                     <code>SCLS1</code>\r
2294                                                     <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>\r
2295                                                     <common_name>White mold</common_name>\r
2296                                                     <synonym>Whetzelinia sclerotiorum</synonym>\r
2297                                                     <rank>strain</rank>\r
2298                                                   </taxonomy>\r
2299                                                 </clade>\r
2300                                               </clade>\r
2301                                               <clade>\r
2302                                                 <taxonomy>\r
2303                                                   <id provider="uniprot">78148</id>\r
2304                                                   <scientific_name>Oidiodendron maius</scientific_name>\r
2305                                                   <rank>species</rank>\r
2306                                                 </taxonomy>\r
2307                                               </clade>\r
2308                                             </clade>\r
2309                                           </clade>\r
2310                                           <clade>\r
2311                                             <taxonomy>\r
2312                                               <id provider="uniprot">388435</id>\r
2313                                               <scientific_name>Lecanoromycetidae</scientific_name>\r
2314                                               <rank>subclass</rank>\r
2315                                             </taxonomy>\r
2316                                             <clade>\r
2317                                               <taxonomy>\r
2318                                                 <id provider="uniprot">27339</id>\r
2319                                                 <scientific_name>Cladonia grayi</scientific_name>\r
2320                                                 <synonym>Cladonia grayi Merr</synonym>\r
2321                                                 <rank>species</rank>\r
2322                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
2323                                               </taxonomy>\r
2324                                             </clade>\r
2325                                             <clade>\r
2326                                               <taxonomy>\r
2327                                                 <id provider="uniprot">107463</id>\r
2328                                                 <scientific_name>Xanthoria parietina</scientific_name>\r
2329                                                 <rank>species</rank>\r
2330                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
2331                                               </taxonomy>\r
2332                                             </clade>\r
2333                                           </clade>\r
2334                                         </clade>\r
2335                                         <clade>\r
2336                                           <taxonomy>\r
2337                                             <id provider="uniprot">147541</id>\r
2338                                             <scientific_name>Dothideomycetes</scientific_name>\r
2339                                             <common_name>bitunicate ascomycetes</common_name>\r
2340                                             <rank>class</rank>\r
2341                                           </taxonomy>\r
2342                                           <reference doi="10.3114/sim.2009.64.01">\r
2343                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
2344                                           </reference>\r
2345                                           <clade>\r
2346                                             <taxonomy>\r
2347                                               <id provider="uniprot">451867</id>\r
2348                                               <scientific_name>Dothideomycetidae</scientific_name>\r
2349                                               <rank>subclass</rank>\r
2350                                             </taxonomy>\r
2351                                             <reference doi="10.3852/mycologia.98.6.1041">\r
2352                                               <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>\r
2353                                             </reference>\r
2354                                             <reference>\r
2355                                             </reference>\r
2356                                             <reference>\r
2357                                             </reference>\r
2358                                             <clade>\r
2359                                               <taxonomy>\r
2360                                                 <id provider="uniprot">134362</id>\r
2361                                                 <scientific_name>Capnodiales</scientific_name>\r
2362                                                 <rank>order</rank>\r
2363                                               </taxonomy>\r
2364                                               <clade>\r
2365                                                 <taxonomy>\r
2366                                                   <id provider="uniprot">41254</id>\r
2367                                                   <scientific_name>Mycosphaerella</scientific_name>\r
2368                                                   <rank>genus</rank>\r
2369                                                 </taxonomy>\r
2370                                                 <clade>\r
2371                                                   <taxonomy>\r
2372                                                     <id provider="uniprot">83344</id>\r
2373                                                     <code>PFIXX</code>\r
2374                                                     <scientific_name>Pseudocercospora fijiensis</scientific_name>\r
2375                                                     <synonym>Mycosphaerella fijiensis</synonym>\r
2376                                                     <rank>species</rank>\r
2377                                                   </taxonomy>\r
2378                                                 </clade>\r
2379                                                 <clade>\r
2380                                                   <taxonomy>\r
2381                                                     <id provider="uniprot">336722</id>\r
2382                                                     <code>MYCGM</code>\r
2383                                                     <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>\r
2384                                                     <common_name>Speckled leaf blotch fungus</common_name>\r
2385                                                     <synonym>Zymoseptoria tritici IPO323</synonym>\r
2386                                                     <synonym>Mycosphaerella graminicola IPO323</synonym>\r
2387                                                     <rank>strain</rank>\r
2388                                                   </taxonomy>\r
2389                                                 </clade>\r
2390                                                 <clade>\r
2391                                                   <taxonomy>\r
2392                                                     <id provider="uniprot">64363</id>\r
2393                                                     <code>MYCPJ</code>\r
2394                                                     <scientific_name>Mycosphaerella pini</scientific_name>\r
2395                                                     <common_name>Red band needle blight disease fungus</common_name>\r
2396                                                     <synonym>Dothistroma septosporum</synonym>\r
2397                                                     <synonym>Dothistroma pini</synonym>\r
2398                                                     <rank>species</rank>\r
2399                                                   </taxonomy>\r
2400                                                 </clade>\r
2401                                                 <clade>\r
2402                                                   <taxonomy>\r
2403                                                     <id provider="uniprot">692275</id>\r
2404                                                     <code>MPSXX</code>\r
2405                                                     <scientific_name>Mycosphaerella populorum SO2202</scientific_name>\r
2406                                                     <synonym>Septoria musiva SO2202</synonym>\r
2407                                                     <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>\r
2408                                                   </taxonomy>\r
2409                                                 </clade>\r
2410                                               </clade>\r
2411                                               <clade>\r
2412                                                 <taxonomy>\r
2413                                                   <id provider="uniprot">430998</id>\r
2414                                                   <code>BCOXX</code>\r
2415                                                   <scientific_name>Baudoinia compniacensis</scientific_name>\r
2416                                                   <common_name>Angels&apos; Share fungus</common_name>\r
2417                                                   <synonym>Torula compniacensis</synonym>\r
2418                                                   <rank>species</rank>\r
2419                                                   <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>\r
2420                                                 </taxonomy>\r
2421                                               </clade>\r
2422                                             </clade>\r
2423                                             <clade>\r
2424                                               <taxonomy>\r
2425                                                 <id provider="uniprot">5580</id>\r
2426                                                 <code>AURPU</code>\r
2427                                                 <scientific_name>Aureobasidium pullulans</scientific_name>\r
2428                                                 <common_name>Black yeast</common_name>\r
2429                                                 <synonym>Pullularia pullulans</synonym>\r
2430                                                 <rank>species</rank>\r
2431                                               </taxonomy>\r
2432                                               <clade>\r
2433                                                 <taxonomy>\r
2434                                                   <id provider="uniprot">178873</id>\r
2435                                                   <code>APPXX</code>\r
2436                                                   <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>\r
2437                                                   <rank>varietas</rank>\r
2438                                                 </taxonomy>\r
2439                                               </clade>\r
2440                                               <clade>\r
2441                                                 <taxonomy>\r
2442                                                   <id provider="uniprot">46634</id>\r
2443                                                   <code>APMXX</code>\r
2444                                                   <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>\r
2445                                                   <rank>varietas</rank>\r
2446                                                   <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>\r
2447                                                 </taxonomy>\r
2448                                               </clade>\r
2449                                               <clade>\r
2450                                                 <taxonomy>\r
2451                                                   <id provider="uniprot">1042127</id>\r
2452                                                   <code>APSXX</code>\r
2453                                                   <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>\r
2454                                                   <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>\r
2455                                                   <rank>varietas</rank>\r
2456                                                 </taxonomy>\r
2457                                               </clade>\r
2458                                             </clade>\r
2459                                           </clade>\r
2460                                           <clade>\r
2461                                             <taxonomy>\r
2462                                               <id provider="uniprot">715340</id>\r
2463                                               <scientific_name>Pleosporineae</scientific_name>\r
2464                                               <rank>suborder</rank>\r
2465                                             </taxonomy>\r
2466                                             <clade>\r
2467                                               <taxonomy>\r
2468                                                 <id provider="uniprot">28556</id>\r
2469                                                 <scientific_name>Pleosporaceae</scientific_name>\r
2470                                                 <rank>family</rank>\r
2471                                               </taxonomy>\r
2472                                               <clade>\r
2473                                                 <name>Cochliobolus &amp; Setosphaeria</name>\r
2474                                                 <clade>\r
2475                                                   <taxonomy>\r
2476                                                     <id provider="uniprot">45130</id>\r
2477                                                     <code>COCSA</code>\r
2478                                                     <scientific_name>Cochliobolus sativus</scientific_name>\r
2479                                                     <synonym>Bipolaris sorokiniana</synonym>\r
2480                                                     <rank>species</rank>\r
2481                                                     <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
2482                                                   </taxonomy>\r
2483                                                 </clade>\r
2484                                                 <clade>\r
2485                                                   <taxonomy>\r
2486                                                     <id provider="uniprot">93612</id>\r
2487                                                     <code>SETTU</code>\r
2488                                                     <scientific_name>Setosphaeria turcica</scientific_name>\r
2489                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
2490                                                     <common_name>Northern corn leaf blight disease fungus</common_name>\r
2491                                                     <synonym>Exserohilum turcicum</synonym>\r
2492                                                     <synonym>Helminthosporium turcicum</synonym>\r
2493                                                     <rank>species</rank>\r
2494                                                   </taxonomy>\r
2495                                                 </clade>\r
2496                                               </clade>\r
2497                                               <clade>\r
2498                                                 <taxonomy>\r
2499                                                   <id provider="uniprot">426418</id>\r
2500                                                   <code>PYRTR</code>\r
2501                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
2502                                                   <common_name>Wheat tan spot fungus</common_name>\r
2503                                                   <synonym>Drechslera tritici-repentis</synonym>\r
2504                                                   <rank>strain</rank>\r
2505                                                 </taxonomy>\r
2506                                               </clade>\r
2507                                             </clade>\r
2508                                             <clade>\r
2509                                               <taxonomy>\r
2510                                                 <id provider="uniprot">321614</id>\r
2511                                                 <code>PHANO</code>\r
2512                                                 <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>\r
2513                                                 <common_name>Glume blotch fungus</common_name>\r
2514                                                 <synonym>Septoria nodorum</synonym>\r
2515                                                 <rank>strain</rank>\r
2516                                               </taxonomy>\r
2517                                             </clade>\r
2518                                           </clade>\r
2519                                         </clade>\r
2520                                       </clade>\r
2521                                       <clade>\r
2522                                         <taxonomy>\r
2523                                           <id provider="uniprot">28568</id>\r
2524                                           <scientific_name>Trichocomaceae</scientific_name>\r
2525                                           <rank>family</rank>\r
2526                                         </taxonomy>\r
2527                                         <clade>\r
2528                                           <taxonomy>\r
2529                                             <id provider="uniprot">5052</id>\r
2530                                             <scientific_name>Aspergillus</scientific_name>\r
2531                                             <rank>genus</rank>\r
2532                                           </taxonomy>\r
2533                                           <clade>\r
2534                                             <taxonomy>\r
2535                                               <id provider="uniprot">332952</id>\r
2536                                               <code>ASPFN</code>\r
2537                                               <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>\r
2538                                               <synonym>Aspergillus flavus NRRL3357</synonym>\r
2539                                               <rank>strain</rank>\r
2540                                               <uri>http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg</uri>\r
2541                                             </taxonomy>\r
2542                                           </clade>\r
2543                                           <clade>\r
2544                                             <taxonomy>\r
2545                                               <id provider="uniprot">425011</id>\r
2546                                               <code>ASPNC</code>\r
2547                                               <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>\r
2548                                               <synonym>Aspergillus niger CBS 513.88</synonym>\r
2549                                               <rank>strain</rank>\r
2550                                               <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>\r
2551                                             </taxonomy>\r
2552                                           </clade>\r
2553                                           <clade>\r
2554                                             <taxonomy>\r
2555                                               <id provider="uniprot">344612</id>\r
2556                                               <code>ASPCL</code>\r
2557                                               <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>\r
2558                                               <synonym>Aspergillus clavatus NRRL 1</synonym>\r
2559                                             </taxonomy>\r
2560                                           </clade>\r
2561                                         </clade>\r
2562                                         <clade>\r
2563                                           <name>Neosartorya &amp; Emericella</name>\r
2564                                           <clade>\r
2565                                             <taxonomy>\r
2566                                               <id provider="uniprot">227321</id>\r
2567                                               <code>EMENI</code>\r
2568                                               <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>\r
2569                                               <authority>Vuill. 1927</authority>\r
2570                                               <synonym>Aspergillus nidulans</synonym>\r
2571                                               <rank>strain</rank>\r
2572                                             </taxonomy>\r
2573                                           </clade>\r
2574                                           <clade>\r
2575                                             <taxonomy>\r
2576                                               <id provider="uniprot">331117</id>\r
2577                                               <code>NEOFI</code>\r
2578                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
2579                                               <synonym>Aspergillus fischerianus</synonym>\r
2580                                               <rank>strain</rank>\r
2581                                             </taxonomy>\r
2582                                           </clade>\r
2583                                         </clade>\r
2584                                       </clade>\r
2585                                     </clade>\r
2586                                     <clade>\r
2587                                       <taxonomy>\r
2588                                         <id provider="uniprot">33183</id>\r
2589                                         <scientific_name>Onygenales</scientific_name>\r
2590                                         <rank>order</rank>\r
2591                                       </taxonomy>\r
2592                                       <reference>\r
2593                                         <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>\r
2594                                       </reference>\r
2595                                       <reference>\r
2596                                       </reference>\r
2597                                       <clade>\r
2598                                         <name>mitosporic Onygenales &amp; Onygenaceae</name>\r
2599                                         <clade>\r
2600                                           <taxonomy>\r
2601                                             <id provider="uniprot">246410</id>\r
2602                                             <code>COCIM</code>\r
2603                                             <scientific_name>Coccidioides immitis (strain RS)</scientific_name>\r
2604                                             <common_name>Valley fever fungus</common_name>\r
2605                                             <synonym>Coccidioides immitis RS</synonym>\r
2606                                           </taxonomy>\r
2607                                         </clade>\r
2608                                         <clade>\r
2609                                           <taxonomy>\r
2610                                             <id provider="uniprot">336963</id>\r
2611                                             <code>UNCRE</code>\r
2612                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
2613                                             <rank>strain</rank>\r
2614                                           </taxonomy>\r
2615                                         </clade>\r
2616                                       </clade>\r
2617                                       <clade>\r
2618                                         <taxonomy>\r
2619                                           <id provider="uniprot">447093</id>\r
2620                                           <code>AJECG</code>\r
2621                                           <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>\r
2622                                           <common_name>Darling&apos;s disease fungus</common_name>\r
2623                                           <synonym>Histoplasma capsulatum</synonym>\r
2624                                         </taxonomy>\r
2625                                       </clade>\r
2626                                     </clade>\r
2627                                   </clade>\r
2628                                   <clade>\r
2629                                     <taxonomy>\r
2630                                       <id provider="uniprot">656061</id>\r
2631                                       <code>TUBMM</code>\r
2632                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
2633                                       <common_name>Perigord black truffle</common_name>\r
2634                                       <synonym>Tuber melanosporum Mel28</synonym>\r
2635                                       <rank>strain</rank>\r
2636                                       <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>\r
2637                                     </taxonomy>\r
2638                                   </clade>\r
2639                                 </clade>\r
2640                                 <clade>\r
2641                                   <taxonomy>\r
2642                                     <id provider="uniprot">4892</id>\r
2643                                     <scientific_name>Saccharomycetales</scientific_name>\r
2644                                     <common_name>budding yeasts</common_name>\r
2645                                     <rank>order</rank>\r
2646                                   </taxonomy>\r
2647                                   <reference doi="10.1186/1471-2148-6-99">\r
2648                                     <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>\r
2649                                   </reference>\r
2650                                   <reference>\r
2651                                   </reference>\r
2652                                   <clade>\r
2653                                     <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>\r
2654                                     <clade>\r
2655                                       <taxonomy>\r
2656                                         <id provider="uniprot">4893</id>\r
2657                                         <scientific_name>Saccharomycetaceae</scientific_name>\r
2658                                         <rank>family</rank>\r
2659                                       </taxonomy>\r
2660                                       <clade>\r
2661                                         <name>Naumovozyma &amp; Saccharomyces</name>\r
2662                                         <clade>\r
2663                                           <taxonomy>\r
2664                                             <id provider="uniprot">1064592</id>\r
2665                                             <code>NAUCC</code>\r
2666                                             <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>\r
2667                                             <common_name>Yeast</common_name>\r
2668                                             <synonym>Saccharomyces castellii</synonym>\r
2669                                             <rank>strain</rank>\r
2670                                           </taxonomy>\r
2671                                         </clade>\r
2672                                         <clade>\r
2673                                           <taxonomy>\r
2674                                             <id provider="uniprot">559292</id>\r
2675                                             <code>YEAST</code>\r
2676                                             <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>\r
2677                                             <common_name>Baker&apos;s yeast</common_name>\r
2678                                             <rank>strain</rank>\r
2679                                           </taxonomy>\r
2680                                         </clade>\r
2681                                       </clade>\r
2682                                       <clade>\r
2683                                         <name>Eremothecium &amp; Kluyveromyces</name>\r
2684                                         <clade>\r
2685                                           <taxonomy>\r
2686                                             <id provider="uniprot">284590</id>\r
2687                                             <code>KLULA</code>\r
2688                                             <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>\r
2689                                             <common_name>Yeast</common_name>\r
2690                                             <synonym>Candida sphaerica</synonym>\r
2691                                             <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>\r
2692                                           </taxonomy>\r
2693                                         </clade>\r
2694                                         <clade>\r
2695                                           <taxonomy>\r
2696                                             <id provider="uniprot">284811</id>\r
2697                                             <code>ASHGO</code>\r
2698                                             <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>\r
2699                                             <common_name>Yeast</common_name>\r
2700                                             <synonym>Eremothecium gossypii</synonym>\r
2701                                           </taxonomy>\r
2702                                         </clade>\r
2703                                       </clade>\r
2704                                     </clade>\r
2705                                     <clade>\r
2706                                       <name>Debaryomyces &amp; Candida</name>\r
2707                                       <clade>\r
2708                                         <taxonomy>\r
2709                                           <id provider="uniprot">5475</id>\r
2710                                           <scientific_name>Candida</scientific_name>\r
2711                                           <synonym>Torulopsis</synonym>\r
2712                                           <rank>genus</rank>\r
2713                                         </taxonomy>\r
2714                                         <clade>\r
2715                                           <taxonomy>\r
2716                                             <id provider="uniprot">237561</id>\r
2717                                             <code>CANAL</code>\r
2718                                             <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>\r
2719                                             <common_name>Yeast</common_name>\r
2720                                             <rank>strain</rank>\r
2721                                           </taxonomy>\r
2722                                         </clade>\r
2723                                         <clade>\r
2724                                           <taxonomy>\r
2725                                             <id provider="uniprot">294747</id>\r
2726                                             <code>CANTT</code>\r
2727                                             <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>\r
2728                                             <common_name>Yeast</common_name>\r
2729                                             <rank>strain</rank>\r
2730                                           </taxonomy>\r
2731                                         </clade>\r
2732                                       </clade>\r
2733                                       <clade>\r
2734                                         <taxonomy>\r
2735                                           <id provider="uniprot">284592</id>\r
2736                                           <code>DEBHA</code>\r
2737                                           <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>\r
2738                                           <common_name>Yeast</common_name>\r
2739                                           <synonym>Torulaspora hansenii</synonym>\r
2740                                           <synonym>Debaryomyces hansenii CBS767</synonym>\r
2741                                         </taxonomy>\r
2742                                       </clade>\r
2743                                     </clade>\r
2744                                   </clade>\r
2745                                   <clade>\r
2746                                     <taxonomy>\r
2747                                       <id provider="uniprot">284591</id>\r
2748                                       <code>YARLI</code>\r
2749                                       <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>\r
2750                                       <synonym>Candida lipolytica</synonym>\r
2751                                       <rank>strain</rank>\r
2752                                     </taxonomy>\r
2753                                   </clade>\r
2754                                 </clade>\r
2755                               </clade>\r
2756                               <clade>\r
2757                                 <taxonomy>\r
2758                                   <id provider="uniprot">451866</id>\r
2759                                   <scientific_name>Taphrinomycotina</scientific_name>\r
2760                                   <rank>subphylum</rank>\r
2761                                 </taxonomy>\r
2762                                 <clade>\r
2763                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
2764                                   <clade>\r
2765                                     <taxonomy>\r
2766                                       <id provider="uniprot">4895</id>\r
2767                                       <scientific_name>Schizosaccharomyces</scientific_name>\r
2768                                       <rank>genus</rank>\r
2769                                     </taxonomy>\r
2770                                     <clade>\r
2771                                       <taxonomy>\r
2772                                         <id provider="uniprot">402676</id>\r
2773                                         <code>SCHJY</code>\r
2774                                         <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>\r
2775                                         <common_name>Fission yeast</common_name>\r
2776                                         <rank>strain</rank>\r
2777                                       </taxonomy>\r
2778                                     </clade>\r
2779                                     <clade>\r
2780                                       <taxonomy>\r
2781                                         <id provider="uniprot">4899</id>\r
2782                                         <code>SCHOT</code>\r
2783                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>\r
2784                                         <common_name>Fission yeast</common_name>\r
2785                                         <rank>species</rank>\r
2786                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>\r
2787                                       </taxonomy>\r
2788                                     </clade>\r
2789                                     <clade>\r
2790                                       <taxonomy>\r
2791                                         <id provider="uniprot">284812</id>\r
2792                                         <code>SCHPO</code>\r
2793                                         <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>\r
2794                                         <common_name>Fission yeast</common_name>\r
2795                                         <rank>strain</rank>\r
2796                                       </taxonomy>\r
2797                                     </clade>\r
2798                                   </clade>\r
2799                                   <clade>\r
2800                                     <taxonomy>\r
2801                                       <id provider="uniprot">4754</id>\r
2802                                       <code>PNECA</code>\r
2803                                       <scientific_name>Pneumocystis carinii</scientific_name>\r
2804                                       <rank>species</rank>\r
2805                                     </taxonomy>\r
2806                                   </clade>\r
2807                                 </clade>\r
2808                                 <clade>\r
2809                                   <taxonomy>\r
2810                                     <id provider="uniprot">5606</id>\r
2811                                     <scientific_name>Saitoella complicata</scientific_name>\r
2812                                     <rank>species</rank>\r
2813                                   </taxonomy>\r
2814                                 </clade>\r
2815                               </clade>\r
2816                             </clade>\r
2817                             <clade>\r
2818                               <taxonomy>\r
2819                                 <id provider="uniprot">5204</id>\r
2820                                 <scientific_name>Basidiomycota</scientific_name>\r
2821                                 <rank>phylum</rank>\r
2822                               </taxonomy>\r
2823                               <clade>\r
2824                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
2825                                 <clade>\r
2826                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
2827                                   <clade>\r
2828                                     <taxonomy>\r
2829                                       <id provider="uniprot">5302</id>\r
2830                                       <scientific_name>Agaricomycotina</scientific_name>\r
2831                                     </taxonomy>\r
2832                                     <clade>\r
2833                                       <taxonomy>\r
2834                                         <id provider="uniprot">155619</id>\r
2835                                         <scientific_name>Homobasidiomycetes</scientific_name>\r
2836                                         <rank>class</rank>\r
2837                                       </taxonomy>\r
2838                                       <reference doi="10.1098/rspb.2002.2123">\r
2839                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
2840                                       </reference>\r
2841                                       <clade>\r
2842                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
2843                                         <clade>\r
2844                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
2845                                           <clade>\r
2846                                             <taxonomy>\r
2847                                               <id provider="uniprot">452333</id>\r
2848                                               <scientific_name>Agaricomycetidae</scientific_name>\r
2849                                               <rank>subclass</rank>\r
2850                                             </taxonomy>\r
2851                                             <clade>\r
2852                                               <name>Agaricales &amp; Boletales</name>\r
2853                                               <clade>\r
2854                                                 <taxonomy>\r
2855                                                   <id provider="uniprot">5338</id>\r
2856                                                   <scientific_name>Agaricales</scientific_name>\r
2857                                                   <rank>order</rank>\r
2858                                                 </taxonomy>\r
2859                                                 <clade>\r
2860                                                   <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
2861                                                   <clade>\r
2862                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
2863                                                     <clade>\r
2864                                                       <name>Agaricus &amp; Coprinopsis</name>\r
2865                                                       <clade>\r
2866                                                         <taxonomy>\r
2867                                                           <id provider="uniprot">597362</id>\r
2868                                                           <code>AGABU</code>\r
2869                                                           <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>\r
2870                                                           <common_name>White button mushroom</common_name>\r
2871                                                           <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>\r
2872                                                           <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
2873                                                         </taxonomy>\r
2874                                                       </clade>\r
2875                                                       <clade>\r
2876                                                         <taxonomy>\r
2877                                                           <id provider="uniprot">5346</id>\r
2878                                                           <code>COPC7</code>\r
2879                                                           <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>\r
2880                                                           <common_name>Inky cap fungus</common_name>\r
2881                                                           <synonym>Hormographiella aspergillata</synonym>\r
2882                                                           <rank>strain</rank>\r
2883                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>\r
2884                                                         </taxonomy>\r
2885                                                       </clade>\r
2886                                                     </clade>\r
2887                                                     <clade>\r
2888                                                       <taxonomy>\r
2889                                                         <id provider="uniprot">486041</id>\r
2890                                                         <code>LACBS</code>\r
2891                                                         <scientific_name>Laccaria bicolor</scientific_name>\r
2892                                                         <common_name>Bicoloured deceiver</common_name>\r
2893                                                         <synonym>Laccaria laccata var. bicolor</synonym>\r
2894                                                         <synonym>Laccaria bicolor S238N-H82</synonym>\r
2895                                                         <rank>strain</rank>\r
2896                                                         <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>\r
2897                                                       </taxonomy>\r
2898                                                     </clade>\r
2899                                                   </clade>\r
2900                                                   <clade>\r
2901                                                     <taxonomy>\r
2902                                                       <id provider="uniprot">206324</id>\r
2903                                                       <scientific_name>Gymnopus luxurians</scientific_name>\r
2904                                                       <rank>species</rank>\r
2905                                                       <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
2906                                                     </taxonomy>\r
2907                                                   </clade>\r
2908                                                 </clade>\r
2909                                                 <clade>\r
2910                                                   <taxonomy>\r
2911                                                     <id provider="uniprot">5322</id>\r
2912                                                     <code>PLEOS</code>\r
2913                                                     <scientific_name>Pleurotus ostreatus</scientific_name>\r
2914                                                     <common_name>Oyster mushroom</common_name>\r
2915                                                     <synonym>White-rot fungus</synonym>\r
2916                                                     <rank>species</rank>\r
2917                                                     <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
2918                                                   </taxonomy>\r
2919                                                 </clade>\r
2920                                               </clade>\r
2921                                               <clade>\r
2922                                                 <taxonomy>\r
2923                                                   <id provider="uniprot">68889</id>\r
2924                                                   <scientific_name>Boletales</scientific_name>\r
2925                                                   <synonym>Melanogastrales</synonym>\r
2926                                                   <synonym>Sclerodermatales</synonym>\r
2927                                                   <rank>order</rank>\r
2928                                                 </taxonomy>\r
2929                                                 <clade>\r
2930                                                   <taxonomy>\r
2931                                                     <id provider="uniprot">227334</id>\r
2932                                                     <scientific_name>Coniophorineae</scientific_name>\r
2933                                                     <rank>suborder</rank>\r
2934                                                   </taxonomy>\r
2935                                                   <clade>\r
2936                                                     <taxonomy>\r
2937                                                       <id provider="uniprot">80637</id>\r
2938                                                       <code>CPUXX</code>\r
2939                                                       <scientific_name>Coniophora puteana</scientific_name>\r
2940                                                       <authority>Schum. ex Fries</authority>\r
2941                                                       <common_name>cellar fungus</common_name>\r
2942                                                       <rank>species</rank>\r
2943                                                       <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
2944                                                     </taxonomy>\r
2945                                                   </clade>\r
2946                                                   <clade>\r
2947                                                     <taxonomy>\r
2948                                                       <id provider="uniprot">578457</id>\r
2949                                                       <code>SERL9</code>\r
2950                                                       <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>\r
2951                                                       <common_name>Dry rot fungus</common_name>\r
2952                                                       <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>\r
2953                                                     </taxonomy>\r
2954                                                   </clade>\r
2955                                                 </clade>\r
2956                                                 <clade>\r
2957                                                   <taxonomy>\r
2958                                                     <id provider="uniprot">388859</id>\r
2959                                                     <scientific_name>Hydnomerulius pinastri</scientific_name>\r
2960                                                     <common_name>Spiny dry rot fungus</common_name>\r
2961                                                     <rank>species</rank>\r
2962                                                     <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>\r
2963                                                   </taxonomy>\r
2964                                                 </clade>\r
2965                                               </clade>\r
2966                                             </clade>\r
2967                                             <clade>\r
2968                                               <taxonomy>\r
2969                                                 <id provider="uniprot">202697</id>\r
2970                                                 <code>JARXX</code>\r
2971                                                 <scientific_name>Jaapia argillacea</scientific_name>\r
2972                                                 <rank>species</rank>\r
2973                                                 <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>\r
2974                                               </taxonomy>\r
2975                                             </clade>\r
2976                                           </clade>\r
2977                                           <clade>\r
2978                                             <taxonomy>\r
2979                                               <id provider="uniprot">104355</id>\r
2980                                               <code>GLOTR</code>\r
2981                                               <scientific_name>Gloeophyllum trabeum</scientific_name>\r
2982                                               <common_name>Brown rot fungus</common_name>\r
2983                                               <rank>species</rank>\r
2984                                               <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>\r
2985                                             </taxonomy>\r
2986                                           </clade>\r
2987                                         </clade>\r
2988                                         <clade>\r
2989                                           <taxonomy>\r
2990                                             <id provider="uniprot">5303</id>\r
2991                                             <scientific_name>Aphyllophorales</scientific_name>\r
2992                                             <authority>Gäum. (1926)</authority>\r
2993                                             <common_name>Shelf Fungi</common_name>\r
2994                                             <synonym>Polyporales</synonym>\r
2995                                             <rank>order</rank>\r
2996                                           </taxonomy>\r
2997                                           <clade>\r
2998                                             <taxonomy>\r
2999                                               <id provider="uniprot">83233</id>\r
3000                                               <scientific_name>Coriolaceae</scientific_name>\r
3001                                               <rank>family</rank>\r
3002                                             </taxonomy>\r
3003                                             <reference doi="10.1017/S1477200005001623">\r
3004                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
3005                                             </reference>\r
3006                                             <reference>\r
3007                                             </reference>\r
3008                                             <reference>\r
3009                                             </reference>\r
3010                                             <clade>\r
3011                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
3012                                               <clade>\r
3013                                                 <name>Antrodia clade</name>\r
3014                                                 <taxonomy>\r
3015                                                   <common_name>Antrodia clade</common_name>\r
3016                                                 </taxonomy>\r
3017                                                 <clade>\r
3018                                                   <taxonomy>\r
3019                                                     <id provider="uniprot">40483</id>\r
3020                                                     <code>FPIXX</code>\r
3021                                                     <scientific_name>Fomitopsis pinicola</scientific_name>\r
3022                                                     <authority>(Swartz) P. Karsten</authority>\r
3023                                                     <common_name>Red banded polypore</common_name>\r
3024                                                     <synonym>Fomes pinicola</synonym>\r
3025                                                     <synonym>Boletus pinicola</synonym>\r
3026                                                     <rank>species</rank>\r
3027                                                     <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>\r
3028                                                   </taxonomy>\r
3029                                                 </clade>\r
3030                                                 <clade>\r
3031                                                   <taxonomy>\r
3032                                                     <id provider="uniprot">104341</id>\r
3033                                                     <code>PPLXX</code>\r
3034                                                     <scientific_name>Postia placenta</scientific_name>\r
3035                                                     <synonym>Rhodonia placenta</synonym>\r
3036                                                     <rank>species</rank>\r
3037                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
3038                                                   </taxonomy>\r
3039                                                 </clade>\r
3040                                               </clade>\r
3041                                               <clade>\r
3042                                                 <name>core polyporoid clade</name>\r
3043                                                 <taxonomy>\r
3044                                                   <common_name>core polyporoid clade</common_name>\r
3045                                                 </taxonomy>\r
3046                                                 <clade>\r
3047                                                   <taxonomy>\r
3048                                                     <id provider="uniprot">5325</id>\r
3049                                                     <code>TRAVE</code>\r
3050                                                     <scientific_name>Trametes versicolor</scientific_name>\r
3051                                                     <authority>(L.) Lloyd 1921</authority>\r
3052                                                     <common_name>White-rot fungus</common_name>\r
3053                                                     <synonym>Coriolus versicolor</synonym>\r
3054                                                     <synonym>Bjerkandera versicolor</synonym>\r
3055                                                     <rank>species</rank>\r
3056                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>\r
3057                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>\r
3058                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>\r
3059                                                   </taxonomy>\r
3060                                                 </clade>\r
3061                                                 <clade>\r
3062                                                   <taxonomy>\r
3063                                                     <id provider="uniprot">742152</id>\r
3064                                                     <code>WOLCO</code>\r
3065                                                     <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>\r
3066                                                     <common_name>Brown rot fungus</common_name>\r
3067                                                     <synonym>Wolfiporia cocos MD-104 SS10</synonym>\r
3068                                                     <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>\r
3069                                                   </taxonomy>\r
3070                                                 </clade>\r
3071                                               </clade>\r
3072                                             </clade>\r
3073                                             <clade>\r
3074                                               <taxonomy>\r
3075                                                 <id provider="uniprot">42742</id>\r
3076                                                 <code>CERSU</code>\r
3077                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
3078                                                 <rank>species</rank>\r
3079                                               </taxonomy>\r
3080                                             </clade>\r
3081                                           </clade>\r
3082                                           <clade>\r
3083                                             <taxonomy>\r
3084                                               <id provider="uniprot">732165</id>\r
3085                                               <code>DICSQ</code>\r
3086                                               <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>\r
3087                                               <common_name>Western red white-rot fungus</common_name>\r
3088                                               <synonym>Dichomitus squalens LYAD-421 SS1</synonym>\r
3089                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
3090                                             </taxonomy>\r
3091                                           </clade>\r
3092                                         </clade>\r
3093                                       </clade>\r
3094                                       <clade>\r
3095                                         <taxonomy>\r
3096                                           <id provider="uniprot">13563</id>\r
3097                                           <code>HETAN</code>\r
3098                                           <scientific_name>Heterobasidion annosum</scientific_name>\r
3099                                           <common_name>Root rot fungus</common_name>\r
3100                                           <rank>species</rank>\r
3101                                         </taxonomy>\r
3102                                       </clade>\r
3103                                     </clade>\r
3104                                     <clade>\r
3105                                       <taxonomy>\r
3106                                         <id provider="uniprot">5215</id>\r
3107                                         <scientific_name>Tremellaceae</scientific_name>\r
3108                                         <rank>family</rank>\r
3109                                       </taxonomy>\r
3110                                       <clade>\r
3111                                         <taxonomy>\r
3112                                           <id provider="uniprot">5207</id>\r
3113                                           <code>CRYNE</code>\r
3114                                           <scientific_name>Cryptococcus neoformans</scientific_name>\r
3115                                           <synonym>Filobasidiella neoformans</synonym>\r
3116                                           <rank>species</rank>\r
3117                                         </taxonomy>\r
3118                                       </clade>\r
3119                                       <clade>\r
3120                                         <taxonomy>\r
3121                                           <id provider="eol">1029985</id>\r
3122                                           <code>TREME</code>\r
3123                                           <scientific_name>Tremella mesenterica</scientific_name>\r
3124                                           <authority>Pers. 1800</authority>\r
3125                                           <common_name>Jelly fungus</common_name>\r
3126                                           <synonym>Yellow Brain</synonym>\r
3127                                           <synonym>Tremella lutescens</synonym>\r
3128                                           <rank>species</rank>\r
3129                                         </taxonomy>\r
3130                                       </clade>\r
3131                                     </clade>\r
3132                                   </clade>\r
3133                                   <clade>\r
3134                                     <taxonomy>\r
3135                                       <id provider="uniprot">452284</id>\r
3136                                       <scientific_name>Ustilaginomycotina</scientific_name>\r
3137                                       <rank>subphylum</rank>\r
3138                                     </taxonomy>\r
3139                                     <clade>\r
3140                                       <taxonomy>\r
3141                                         <id provider="uniprot">425265</id>\r
3142                                         <code>MALGO</code>\r
3143                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
3144                                         <common_name>Dandruff-associated fungus</common_name>\r
3145                                       </taxonomy>\r
3146                                     </clade>\r
3147                                     <clade>\r
3148                                       <taxonomy>\r
3149                                         <id provider="uniprot">237631</id>\r
3150                                         <code>USTMA</code>\r
3151                                         <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>\r
3152                                         <common_name>Corn smut fungus</common_name>\r
3153                                         <rank>species</rank>\r
3154                                       </taxonomy>\r
3155                                     </clade>\r
3156                                   </clade>\r
3157                                 </clade>\r
3158                                 <clade>\r
3159                                   <taxonomy>\r
3160                                     <id provider="uniprot">29000</id>\r
3161                                     <scientific_name>Pucciniomycotina</scientific_name>\r
3162                                     <rank>subphylum</rank>\r
3163                                   </taxonomy>\r
3164                                   <clade>\r
3165                                     <taxonomy>\r
3166                                       <id provider="uniprot">5258</id>\r
3167                                       <scientific_name>Pucciniales</scientific_name>\r
3168                                       <common_name>rusts</common_name>\r
3169                                       <rank>order</rank>\r
3170                                     </taxonomy>\r
3171                                     <clade>\r
3172                                       <taxonomy>\r
3173                                         <id provider="uniprot">747676</id>\r
3174                                         <code>MELLP</code>\r
3175                                         <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>\r
3176                                         <authority>Kleb. 1902</authority>\r
3177                                         <common_name>Poplar leaf rust fungus</common_name>\r
3178                                         <synonym>Melampsora larici-populina 98AG31</synonym>\r
3179                                         <synonym>Melampsora laricis-populina 98AG31</synonym>\r
3180                                         <rank>strain</rank>\r
3181                                       </taxonomy>\r
3182                                     </clade>\r
3183                                     <clade>\r
3184                                       <taxonomy>\r
3185                                         <id provider="uniprot">5297</id>\r
3186                                         <code>PUCGR</code>\r
3187                                         <scientific_name>Puccinia graminis</scientific_name>\r
3188                                         <authority>Pers. 1794</authority>\r
3189                                         <common_name>Black stem rust fungus</common_name>\r
3190                                         <rank>species</rank>\r
3191                                       </taxonomy>\r
3192                                     </clade>\r
3193                                   </clade>\r
3194                                   <clade>\r
3195                                     <taxonomy>\r
3196                                       <id provider="uniprot">89013</id>\r
3197                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
3198                                     </taxonomy>\r
3199                                     <clade>\r
3200                                       <taxonomy>\r
3201                                         <id provider="uniprot">29898</id>\r
3202                                         <code>RHOGR</code>\r
3203                                         <scientific_name>Rhodotorula graminis</scientific_name>\r
3204                                         <common_name>Yeast</common_name>\r
3205                                         <rank>species</rank>\r
3206                                       </taxonomy>\r
3207                                     </clade>\r
3208                                     <clade>\r
3209                                       <taxonomy>\r
3210                                         <id provider="uniprot">40563</id>\r
3211                                         <code>SPORO</code>\r
3212                                         <scientific_name>Sporobolomyces roseus</scientific_name>\r
3213                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
3214                                         <rank>species</rank>\r
3215                                       </taxonomy>\r
3216                                     </clade>\r
3217                                   </clade>\r
3218                                 </clade>\r
3219                               </clade>\r
3220                               <clade>\r
3221                                 <taxonomy>\r
3222                                   <id provider="uniprot">671144</id>\r
3223                                   <code>WALSC</code>\r
3224                                   <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>\r
3225                                   <rank>strain</rank>\r
3226                                 </taxonomy>\r
3227                               </clade>\r
3228                             </clade>\r
3229                           </clade>\r
3230                           <clade>\r
3231                             <taxonomy>\r
3232                               <id provider="uniprot">451507</id>\r
3233                               <scientific_name>Mucoromycotina</scientific_name>\r
3234                               <rank>subphylum</rank>\r
3235                             </taxonomy>\r
3236                             <clade>\r
3237                               <taxonomy>\r
3238                                 <id provider="uniprot">34489</id>\r
3239                                 <scientific_name>Mucoraceae</scientific_name>\r
3240                                 <rank>family</rank>\r
3241                               </taxonomy>\r
3242                               <clade>\r
3243                                 <taxonomy>\r
3244                                   <id provider="uniprot">36080</id>\r
3245                                   <code>MUCCI</code>\r
3246                                   <scientific_name>Mucor circinelloides</scientific_name>\r
3247                                   <synonym>Mucor griseo-roseus</synonym>\r
3248                                   <rank>species</rank>\r
3249                                 </taxonomy>\r
3250                               </clade>\r
3251                               <clade>\r
3252                                 <taxonomy>\r
3253                                   <id provider="uniprot">4837</id>\r
3254                                   <code>PHYBL</code>\r
3255                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>\r
3256                                   <rank>species</rank>\r
3257                                 </taxonomy>\r
3258                               </clade>\r
3259                               <clade>\r
3260                                 <taxonomy>\r
3261                                   <id provider="uniprot">64495</id>\r
3262                                   <code>RHIOR</code>\r
3263                                   <scientific_name>Rhizopus oryzae</scientific_name>\r
3264                                   <synonym>Rhizopus delemar</synonym>\r
3265                                   <rank>species</rank>\r
3266                                 </taxonomy>\r
3267                               </clade>\r
3268                             </clade>\r
3269                             <clade>\r
3270                               <taxonomy>\r
3271                                 <id provider="uniprot">1069443</id>\r
3272                                 <code>MVNXX</code>\r
3273                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>\r
3274                                 <rank>species</rank>\r
3275                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>\r
3276                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
3277                               </taxonomy>\r
3278                             </clade>\r
3279                           </clade>\r
3280                         </clade>\r
3281                         <clade>\r
3282                           <taxonomy>\r
3283                             <id provider="uniprot">61392</id>\r
3284                             <code>CREXX</code>\r
3285                             <scientific_name>Coemansia reversa</scientific_name>\r
3286                             <rank>species</rank>\r
3287                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>\r
3288                           </taxonomy>\r
3289                         </clade>\r
3290                       </clade>\r
3291                       <clade>\r
3292                         <taxonomy>\r
3293                           <id provider="uniprot">28583</id>\r
3294                           <code>ALLMA</code>\r
3295                           <scientific_name>Allomyces macrogynus</scientific_name>\r
3296                           <rank>species</rank>\r
3297                         </taxonomy>\r
3298                       </clade>\r
3299                     </clade>\r
3300                     <clade>\r
3301                       <taxonomy>\r
3302                         <id provider="uniprot">4761</id>\r
3303                         <scientific_name>Chytridiomycota</scientific_name>\r
3304                         <common_name>chytrids</common_name>\r
3305                         <synonym>Mastigomycotina</synonym>\r
3306                         <rank>phylum</rank>\r
3307                       </taxonomy>\r
3308                       <clade>\r
3309                         <taxonomy>\r
3310                           <id provider="uniprot">451435</id>\r
3311                           <scientific_name>Chytridiomycetes</scientific_name>\r
3312                           <rank>class</rank>\r
3313                         </taxonomy>\r
3314                         <clade>\r
3315                           <taxonomy>\r
3316                             <id provider="uniprot">684364</id>\r
3317                             <code>BATDJ</code>\r
3318                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>\r
3319                             <common_name>Frog chytrid fungus</common_name>\r
3320                             <rank>strain</rank>\r
3321                           </taxonomy>\r
3322                         </clade>\r
3323                         <clade>\r
3324                           <taxonomy>\r
3325                             <id provider="uniprot">109760</id>\r
3326                             <code>SPIPN</code>\r
3327                             <scientific_name>Spizellomyces punctatus</scientific_name>\r
3328                             <rank>species</rank>\r
3329                           </taxonomy>\r
3330                         </clade>\r
3331                       </clade>\r
3332                       <clade>\r
3333                         <taxonomy>\r
3334                           <id provider="uniprot">1123529</id>\r
3335                           <code>GONPR</code>\r
3336                           <scientific_name>Gonapodya prolifera</scientific_name>\r
3337                           <authority>A. Fisch. 1892</authority>\r
3338                           <common_name>Aquatic fungus</common_name>\r
3339                           <rank>species</rank>\r
3340                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
3341                         </taxonomy>\r
3342                       </clade>\r
3343                     </clade>\r
3344                   </clade>\r
3345                   <clade>\r
3346                     <taxonomy>\r
3347                       <id provider="uniprot">73868</id>\r
3348                       <code>PIRSE</code>\r
3349                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>\r
3350                       <rank>species</rank>\r
3351                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
3352                     </taxonomy>\r
3353                   </clade>\r
3354                 </clade>\r
3355                 <clade>\r
3356                   <taxonomy>\r
3357                     <id provider="uniprot">6029</id>\r
3358                     <scientific_name>Microsporidia</scientific_name>\r
3359                     <rank>phylum</rank>\r
3360                   </taxonomy>\r
3361                   <clade>\r
3362                     <taxonomy>\r
3363                       <id provider="uniprot">6032</id>\r
3364                       <scientific_name>Apansporoblastina</scientific_name>\r
3365                       <rank>suborder</rank>\r
3366                     </taxonomy>\r
3367                     <clade>\r
3368                       <taxonomy>\r
3369                         <id provider="uniprot">6033</id>\r
3370                         <scientific_name>Encephalitozoon</scientific_name>\r
3371                         <rank>genus</rank>\r
3372                       </taxonomy>\r
3373                       <clade>\r
3374                         <taxonomy>\r
3375                           <id provider="uniprot">284813</id>\r
3376                           <code>ENCCU</code>\r
3377                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>\r
3378                           <common_name>Microsporidian parasite</common_name>\r
3379                           <rank>strain</rank>\r
3380                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>\r
3381                         </taxonomy>\r
3382                       </clade>\r
3383                       <clade>\r
3384                         <taxonomy>\r
3385                           <id provider="uniprot">907965</id>\r
3386                           <code>ENCHA</code>\r
3387                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>\r
3388                           <common_name>Microsporidian parasite</common_name>\r
3389                           <rank>strain</rank>\r
3390                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>\r
3391                         </taxonomy>\r
3392                       </clade>\r
3393                     </clade>\r
3394                     <clade>\r
3395                       <taxonomy>\r
3396                         <id provider="uniprot">993615</id>\r
3397                         <code>VITCO</code>\r
3398                         <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>\r
3399                         <common_name>Microsporidian parasite</common_name>\r
3400                         <synonym>Nosema corneum</synonym>\r
3401                       </taxonomy>\r
3402                     </clade>\r
3403                   </clade>\r
3404                   <clade>\r
3405                     <taxonomy>\r
3406                       <id provider="uniprot">72359</id>\r
3407                       <code>TRAHO</code>\r
3408                       <scientific_name>Trachipleistophora hominis</scientific_name>\r
3409                       <common_name>Microsporidian parasite</common_name>\r
3410                       <rank>species</rank>\r
3411                     </taxonomy>\r
3412                   </clade>\r
3413                 </clade>\r
3414               </clade>\r
3415               <clade>\r
3416                 <name>Fonticula &amp; Nucleariidae</name>\r
3417                 <reference doi="10.1093/molbev/msp185">\r
3418                 </reference>\r
3419                 <clade>\r
3420                   <taxonomy>\r
3421                     <id provider="uniprot">691883</id>\r
3422                     <scientific_name>Fonticula alba</scientific_name>\r
3423                     <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>\r
3424                     <rank>species</rank>\r
3425                   </taxonomy>\r
3426                 </clade>\r
3427                 <clade>\r
3428                   <taxonomy>\r
3429                     <id provider="uniprot">154970</id>\r
3430                     <scientific_name>Nuclearia simplex</scientific_name>\r
3431                     <rank>species</rank>\r
3432                   </taxonomy>\r
3433                 </clade>\r
3434               </clade>\r
3435             </clade>\r
3436           </clade>\r
3437           <clade>\r
3438             <name>Amoebozoa</name>\r
3439             <taxonomy>\r
3440               <id provider="uniprot">554915</id>\r
3441               <scientific_name>Amoebozoa</scientific_name>\r
3442             </taxonomy>\r
3443             <clade>\r
3444               <taxonomy>\r
3445                 <id provider="uniprot">33083</id>\r
3446                 <scientific_name>Dictyosteliida</scientific_name>\r
3447                 <common_name>dictyostelid cellular slime molds</common_name>\r
3448                 <rank>order</rank>\r
3449               </taxonomy>\r
3450               <clade>\r
3451                 <name>Dictyostelium</name>\r
3452                 <taxonomy>\r
3453                   <id provider="uniprot">5782</id>\r
3454                   <scientific_name>Dictyostelium</scientific_name>\r
3455                   <rank>genus</rank>\r
3456                 </taxonomy>\r
3457                 <clade>\r
3458                   <taxonomy>\r
3459                     <id provider="uniprot">44689</id>\r
3460                     <code>DICDI</code>\r
3461                     <scientific_name>Dictyostelium discoideum</scientific_name>\r
3462                     <common_name>Slime mold</common_name>\r
3463                     <rank>species</rank>\r
3464                     <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>\r
3465                   </taxonomy>\r
3466                 </clade>\r
3467                 <clade>\r
3468                   <taxonomy>\r
3469                     <id provider="uniprot">5786</id>\r
3470                     <code>DICPU</code>\r
3471                     <scientific_name>Dictyostelium purpureum</scientific_name>\r
3472                     <common_name>Slime mold</common_name>\r
3473                     <rank>species</rank>\r
3474                   </taxonomy>\r
3475                 </clade>\r
3476               </clade>\r
3477               <clade>\r
3478                 <taxonomy>\r
3479                   <id provider="uniprot">13642</id>\r
3480                   <code>POLPA</code>\r
3481                   <scientific_name>Polysphondylium pallidum</scientific_name>\r
3482                   <common_name>Cellular slime mold</common_name>\r
3483                   <rank>species</rank>\r
3484                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>\r
3485                 </taxonomy>\r
3486               </clade>\r
3487             </clade>\r
3488             <clade>\r
3489               <taxonomy>\r
3490                 <id provider="uniprot">5759</id>\r
3491                 <code>ENTHI</code>\r
3492                 <scientific_name>Entamoeba histolytica</scientific_name>\r
3493                 <rank>species</rank>\r
3494               </taxonomy>\r
3495             </clade>\r
3496           </clade>\r
3497         </clade>\r
3498         <clade>\r
3499           <name>Bikonta</name>\r
3500           <reference doi="10.1099/ijs.0.63216-0">\r
3501           </reference>\r
3502           <clade>\r
3503             <name>Plants+HC+SAR megagroup</name>\r
3504             <clade>\r
3505               <name>Plants+HC</name>\r
3506               <clade>\r
3507                 <name>Archaeplastida</name>\r
3508                 <clade>\r
3509                   <taxonomy>\r
3510                     <id provider="uniprot">33090</id>\r
3511                     <scientific_name>Viridiplantae</scientific_name>\r
3512                     <common_name>green plants</common_name>\r
3513                     <rank>kingdom</rank>\r
3514                   </taxonomy>\r
3515                   <clade>\r
3516                     <taxonomy>\r
3517                       <id provider="uniprot">3193</id>\r
3518                       <scientific_name>Embryophyta</scientific_name>\r
3519                     </taxonomy>\r
3520                     <clade>\r
3521                       <taxonomy>\r
3522                         <id provider="uniprot">58023</id>\r
3523                         <scientific_name>Tracheophyta</scientific_name>\r
3524                         <common_name>vascular plants</common_name>\r
3525                       </taxonomy>\r
3526                       <clade>\r
3527                         <taxonomy>\r
3528                           <id provider="uniprot">58024</id>\r
3529                           <scientific_name>Spermatophyta</scientific_name>\r
3530                           <common_name>seed plants</common_name>\r
3531                         </taxonomy>\r
3532                         <clade>\r
3533                           <taxonomy>\r
3534                             <id provider="uniprot">3398</id>\r
3535                             <scientific_name>Magnoliophyta</scientific_name>\r
3536                             <common_name>flowering plants</common_name>\r
3537                             <synonym>Angiospermae</synonym>\r
3538                           </taxonomy>\r
3539                           <clade>\r
3540                             <taxonomy>\r
3541                               <id provider="uniprot">71240</id>\r
3542                               <scientific_name>eudicotyledons</scientific_name>\r
3543                             </taxonomy>\r
3544                             <clade>\r
3545                               <taxonomy>\r
3546                                 <id provider="uniprot">91827</id>\r
3547                                 <scientific_name>core eudicotyledons</scientific_name>\r
3548                               </taxonomy>\r
3549                               <clade>\r
3550                                 <taxonomy>\r
3551                                   <id provider="uniprot">71275</id>\r
3552                                   <scientific_name>rosids</scientific_name>\r
3553                                   <rank>subclass</rank>\r
3554                                 </taxonomy>\r
3555                                 <clade>\r
3556                                   <name>fabids &amp; malvids</name>\r
3557                                   <clade>\r
3558                                     <taxonomy>\r
3559                                       <id provider="uniprot">91835</id>\r
3560                                       <scientific_name>fabids</scientific_name>\r
3561                                     </taxonomy>\r
3562                                     <clade>\r
3563                                       <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
3564                                       <clade>\r
3565                                         <name>Rosales &amp; Cucurbitales</name>\r
3566                                         <clade>\r
3567                                           <taxonomy>\r
3568                                             <id provider="uniprot">3745</id>\r
3569                                             <scientific_name>Rosaceae</scientific_name>\r
3570                                             <rank>family</rank>\r
3571                                           </taxonomy>\r
3572                                           <clade>\r
3573                                             <taxonomy>\r
3574                                               <id provider="uniprot">57918</id>\r
3575                                               <code>FRAVE</code>\r
3576                                               <scientific_name>Fragaria vesca</scientific_name>\r
3577                                               <common_name>Woodland strawberry</common_name>\r
3578                                               <synonym>Fragaria vesca L.</synonym>\r
3579                                               <synonym>European strawberry</synonym>\r
3580                                               <synonym>alpine strawberry</synonym>\r
3581                                               <rank>species</rank>\r
3582                                               <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>\r
3583                                               <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>\r
3584                                             </taxonomy>\r
3585                                           </clade>\r
3586                                           <clade>\r
3587                                             <taxonomy>\r
3588                                               <id provider="uniprot">3760</id>\r
3589                                               <code>PRUPE</code>\r
3590                                               <scientific_name>Prunus persica</scientific_name>\r
3591                                               <common_name>Peach</common_name>\r
3592                                               <synonym>Persica vulgaris</synonym>\r
3593                                               <synonym>Amygdalus persica</synonym>\r
3594                                               <rank>species</rank>\r
3595                                               <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
3596                                             </taxonomy>\r
3597                                           </clade>\r
3598                                         </clade>\r
3599                                         <clade>\r
3600                                           <taxonomy>\r
3601                                             <id provider="uniprot">3659</id>\r
3602                                             <code>CUCSA</code>\r
3603                                             <scientific_name>Cucumis sativus</scientific_name>\r
3604                                             <common_name>Cucumber</common_name>\r
3605                                             <rank>species</rank>\r
3606                                           </taxonomy>\r
3607                                         </clade>\r
3608                                       </clade>\r
3609                                       <clade>\r
3610                                         <taxonomy>\r
3611                                           <id provider="uniprot">3814</id>\r
3612                                           <scientific_name>Papilionoideae</scientific_name>\r
3613                                           <rank>subfamily</rank>\r
3614                                         </taxonomy>\r
3615                                         <clade>\r
3616                                           <taxonomy>\r
3617                                             <id provider="uniprot">3847</id>\r
3618                                             <code>SOYBN</code>\r
3619                                             <scientific_name>Glycine max</scientific_name>\r
3620                                             <authority>cv. Wye</authority>\r
3621                                             <common_name>Soybean</common_name>\r
3622                                             <synonym>Glycine hispida</synonym>\r
3623                                             <rank>species</rank>\r
3624                                           </taxonomy>\r
3625                                         </clade>\r
3626                                         <clade>\r
3627                                           <taxonomy>\r
3628                                             <id provider="uniprot">3880</id>\r
3629                                             <code>MEDTR</code>\r
3630                                             <scientific_name>Medicago truncatula</scientific_name>\r
3631                                             <common_name>Barrel medic</common_name>\r
3632                                             <synonym>Medicago tribuloides</synonym>\r
3633                                             <rank>species</rank>\r
3634                                             <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
3635                                           </taxonomy>\r
3636                                         </clade>\r
3637                                       </clade>\r
3638                                     </clade>\r
3639                                     <clade>\r
3640                                       <taxonomy>\r
3641                                         <id provider="uniprot">3646</id>\r
3642                                         <scientific_name>Malpighiales</scientific_name>\r
3643                                         <rank>order</rank>\r
3644                                       </taxonomy>\r
3645                                       <clade>\r
3646                                         <taxonomy>\r
3647                                           <id provider="uniprot">3977</id>\r
3648                                           <scientific_name>Euphorbiaceae</scientific_name>\r
3649                                           <rank>family</rank>\r
3650                                         </taxonomy>\r
3651                                         <clade>\r
3652                                           <taxonomy>\r
3653                                             <id provider="uniprot">3983</id>\r
3654                                             <code>MANES</code>\r
3655                                             <scientific_name>Manihot esculenta</scientific_name>\r
3656                                             <common_name>Tapioca</common_name>\r
3657                                             <synonym>Jatropha manihot</synonym>\r
3658                                             <rank>species</rank>\r
3659                                             <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
3660                                           </taxonomy>\r
3661                                         </clade>\r
3662                                         <clade>\r
3663                                           <taxonomy>\r
3664                                             <id provider="uniprot">3988</id>\r
3665                                             <code>RICCO</code>\r
3666                                             <scientific_name>Ricinus communis</scientific_name>\r
3667                                             <common_name>Castor bean</common_name>\r
3668                                             <synonym>Ricinus sanguineus</synonym>\r
3669                                             <rank>species</rank>\r
3670                                             <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
3671                                           </taxonomy>\r
3672                                         </clade>\r
3673                                       </clade>\r
3674                                       <clade>\r
3675                                         <taxonomy>\r
3676                                           <id provider="uniprot">3694</id>\r
3677                                           <code>POPTR</code>\r
3678                                           <scientific_name>Populus trichocarpa</scientific_name>\r
3679                                           <common_name>Western balsam poplar</common_name>\r
3680                                           <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
3681                                           <rank>species</rank>\r
3682                                         </taxonomy>\r
3683                                       </clade>\r
3684                                     </clade>\r
3685                                   </clade>\r
3686                                   <clade>\r
3687                                     <taxonomy>\r
3688                                       <id provider="uniprot">91836</id>\r
3689                                       <scientific_name>malvids</scientific_name>\r
3690                                     </taxonomy>\r
3691                                     <clade>\r
3692                                       <name>Brassicales &amp; Sapindales</name>\r
3693                                       <clade>\r
3694                                         <taxonomy>\r
3695                                           <id provider="uniprot">3699</id>\r
3696                                           <scientific_name>Brassicales</scientific_name>\r
3697                                           <rank>order</rank>\r
3698                                         </taxonomy>\r
3699                                         <clade>\r
3700                                           <taxonomy>\r
3701                                             <id provider="uniprot">3700</id>\r
3702                                             <scientific_name>Brassicaceae</scientific_name>\r
3703                                             <rank>family</rank>\r
3704                                           </taxonomy>\r
3705                                           <clade>\r
3706                                             <taxonomy>\r
3707                                               <id provider="uniprot">3701</id>\r
3708                                               <scientific_name>Arabidopsis</scientific_name>\r
3709                                               <rank>genus</rank>\r
3710                                             </taxonomy>\r
3711                                             <clade>\r
3712                                               <taxonomy>\r
3713                                                 <id provider="uniprot">59689</id>\r
3714                                                 <code>ARALY</code>\r
3715                                                 <scientific_name>Arabidopsis lyrata</scientific_name>\r
3716                                                 <common_name>Lyre-leaved rock-cress</common_name>\r
3717                                                 <rank>species</rank>\r
3718                                               </taxonomy>\r
3719                                             </clade>\r
3720                                             <clade>\r
3721                                               <taxonomy>\r
3722                                                 <id provider="uniprot">3702</id>\r
3723                                                 <code>ARATH</code>\r
3724                                                 <scientific_name>Arabidopsis thaliana</scientific_name>\r
3725                                                 <common_name>Mouse-ear cress</common_name>\r
3726                                                 <rank>species</rank>\r
3727                                               </taxonomy>\r
3728                                             </clade>\r
3729                                           </clade>\r
3730                                           <clade>\r
3731                                             <taxonomy>\r
3732                                               <id provider="uniprot">98038</id>\r
3733                                               <code>THEHA</code>\r
3734                                               <scientific_name>Thellungiella halophila</scientific_name>\r
3735                                               <common_name>Salt cress</common_name>\r
3736                                               <rank>species</rank>\r
3737                                               <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>\r
3738                                             </taxonomy>\r
3739                                           </clade>\r
3740                                         </clade>\r
3741                                         <clade>\r
3742                                           <taxonomy>\r
3743                                             <id provider="uniprot">3649</id>\r
3744                                             <code>CARPA</code>\r
3745                                             <scientific_name>Carica papaya</scientific_name>\r
3746                                             <common_name>Papaya</common_name>\r
3747                                             <rank>species</rank>\r
3748                                             <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
3749                                             <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
3750                                           </taxonomy>\r
3751                                         </clade>\r
3752                                       </clade>\r
3753                                       <clade>\r
3754                                         <taxonomy>\r
3755                                           <id provider="uniprot">2706</id>\r
3756                                           <scientific_name>Citrus</scientific_name>\r
3757                                           <rank>genus</rank>\r
3758                                         </taxonomy>\r
3759                                         <clade>\r
3760                                           <taxonomy>\r
3761                                             <id provider="uniprot">85681</id>\r
3762                                             <code>CCLXX</code>\r
3763                                             <scientific_name>Citrus clementina</scientific_name>\r
3764                                             <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
3765                                             <rank>species</rank>\r
3766                                             <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>\r
3767                                           </taxonomy>\r
3768                                         </clade>\r
3769                                         <clade>\r
3770                                           <taxonomy>\r
3771                                             <id provider="uniprot">2711</id>\r
3772                                             <code>CITSI</code>\r
3773                                             <scientific_name>Citrus sinensis</scientific_name>\r
3774                                             <common_name>Sweet orange</common_name>\r
3775                                             <synonym>Citrus x sinensis</synonym>\r
3776                                             <synonym>Citrus aurantium var. sinensis</synonym>\r
3777                                             <rank>species</rank>\r
3778                                             <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
3779                                           </taxonomy>\r
3780                                         </clade>\r
3781                                       </clade>\r
3782                                     </clade>\r
3783                                     <clade>\r
3784                                       <taxonomy>\r
3785                                         <id provider="uniprot">71139</id>\r
3786                                         <code>EUCGR</code>\r
3787                                         <scientific_name>Eucalyptus grandis</scientific_name>\r
3788                                         <common_name>Flooded gum</common_name>\r
3789                                         <rank>species</rank>\r
3790                                         <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
3791                                       </taxonomy>\r
3792                                     </clade>\r
3793                                   </clade>\r
3794                                 </clade>\r
3795                                 <clade>\r
3796                                   <taxonomy>\r
3797                                     <id provider="eol">582304</id>\r
3798                                     <code>VITVI</code>\r
3799                                     <scientific_name>Vitis vinifera</scientific_name>\r
3800                                     <common_name>Grape</common_name>\r
3801                                     <rank>species</rank>\r
3802                                   </taxonomy>\r
3803                                 </clade>\r
3804                               </clade>\r
3805                               <clade>\r
3806                                 <taxonomy>\r
3807                                   <id provider="uniprot">91888</id>\r
3808                                   <scientific_name>lamiids</scientific_name>\r
3809                                 </taxonomy>\r
3810                                 <clade>\r
3811                                   <taxonomy>\r
3812                                     <id provider="uniprot">4070</id>\r
3813                                     <scientific_name>Solanaceae</scientific_name>\r
3814                                     <rank>family</rank>\r
3815                                   </taxonomy>\r
3816                                   <clade>\r
3817                                     <taxonomy>\r
3818                                       <id provider="uniprot">4107</id>\r
3819                                       <scientific_name>Solanum</scientific_name>\r
3820                                       <rank>genus</rank>\r
3821                                     </taxonomy>\r
3822                                     <clade>\r
3823                                       <taxonomy>\r
3824                                         <id provider="uniprot">49274</id>\r
3825                                         <scientific_name>Lycopersicon</scientific_name>\r
3826                                         <rank>subgenus</rank>\r
3827                                       </taxonomy>\r
3828                                       <clade>\r
3829                                         <taxonomy>\r
3830                                           <id provider="uniprot">4081</id>\r
3831                                           <code>SOLLC</code>\r
3832                                           <scientific_name>Solanum lycopersicum</scientific_name>\r
3833                                           <common_name>Tomato</common_name>\r
3834                                           <synonym>Lycopersicon esculentum</synonym>\r
3835                                           <rank>species</rank>\r
3836                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
3837                                         </taxonomy>\r
3838                                       </clade>\r
3839                                       <clade>\r
3840                                         <taxonomy>\r
3841                                           <id provider="uniprot">4084</id>\r
3842                                           <code>SOLPI</code>\r
3843                                           <scientific_name>Solanum pimpinellifolium</scientific_name>\r
3844                                           <common_name>Currant tomato</common_name>\r
3845                                           <synonym>Lycopersicon pimpinellifolium</synonym>\r
3846                                           <rank>species</rank>\r
3847                                           <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>\r
3848                                         </taxonomy>\r
3849                                       </clade>\r
3850                                     </clade>\r
3851                                     <clade>\r
3852                                       <taxonomy>\r
3853                                         <id provider="uniprot">4113</id>\r
3854                                         <code>SOLTU</code>\r
3855                                         <scientific_name>Solanum tuberosum</scientific_name>\r
3856                                         <common_name>Potato</common_name>\r
3857                                         <rank>species</rank>\r
3858                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>\r
3859                                       </taxonomy>\r
3860                                     </clade>\r
3861                                   </clade>\r
3862                                   <clade>\r
3863                                     <taxonomy>\r
3864                                       <id provider="uniprot">4097</id>\r
3865                                       <code>TOBAC</code>\r
3866                                       <scientific_name>Nicotiana tabacum</scientific_name>\r
3867                                       <common_name>Common tobacco</common_name>\r
3868                                       <rank>species</rank>\r
3869                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
3870                                     </taxonomy>\r
3871                                   </clade>\r
3872                                 </clade>\r
3873                                 <clade>\r
3874                                   <taxonomy>\r
3875                                     <id provider="uniprot">4155</id>\r
3876                                     <code>MIMGU</code>\r
3877                                     <scientific_name>Mimulus guttatus</scientific_name>\r
3878                                     <common_name>Yellow monkey flower</common_name>\r
3879                                     <synonym>Yellow monkey flower</synonym>\r
3880                                     <rank>species</rank>\r
3881                                   </taxonomy>\r
3882                                 </clade>\r
3883                               </clade>\r
3884                             </clade>\r
3885                             <clade>\r
3886                               <taxonomy>\r
3887                                 <id provider="uniprot">218851</id>\r
3888                                 <code>AQUCA</code>\r
3889                                 <scientific_name>Aquilegia caerulea</scientific_name>\r
3890                                 <authority>E.James</authority>\r
3891                                 <common_name>Rocky mountain columbine</common_name>\r
3892                                 <synonym>Aquilegia coerulea</synonym>\r
3893                                 <rank>species</rank>\r
3894                                 <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>\r
3895                               </taxonomy>\r
3896                             </clade>\r
3897                           </clade>\r
3898                           <clade>\r
3899                             <taxonomy>\r
3900                               <id provider="uniprot">4447</id>\r
3901                               <scientific_name>Liliopsida</scientific_name>\r
3902                               <common_name>monocots</common_name>\r
3903                               <synonym>Monocotyledoneae</synonym>\r
3904                               <rank>class</rank>\r
3905                             </taxonomy>\r
3906                             <clade>\r
3907                               <taxonomy>\r
3908                                 <id provider="uniprot">4479</id>\r
3909                                 <scientific_name>Poaceae</scientific_name>\r
3910                                 <common_name>grass family</common_name>\r
3911                                 <synonym>Gramineae</synonym>\r
3912                                 <rank>family</rank>\r
3913                               </taxonomy>\r
3914                               <clade>\r
3915                                 <taxonomy>\r
3916                                   <id provider="uniprot">147369</id>\r
3917                                   <scientific_name>Panicoideae</scientific_name>\r
3918                                   <authority>Link, 1827</authority>\r
3919                                   <synonym>Centothecoideae</synonym>\r
3920                                   <rank>subfamily</rank>\r
3921                                 </taxonomy>\r
3922                                 <clade>\r
3923                                   <taxonomy>\r
3924                                     <id provider="uniprot">147429</id>\r
3925                                     <scientific_name>Andropogoneae</scientific_name>\r
3926                                     <authority>Dumort., 1824</authority>\r
3927                                     <rank>tribe</rank>\r
3928                                   </taxonomy>\r
3929                                   <clade>\r
3930                                     <taxonomy>\r
3931                                       <id provider="uniprot">4558</id>\r
3932                                       <code>SORBI</code>\r
3933                                       <scientific_name>Sorghum bicolor</scientific_name>\r
3934                                       <common_name>Sorghum</common_name>\r
3935                                       <synonym>Sorghum vulgare</synonym>\r
3936                                       <rank>species</rank>\r
3937                                     </taxonomy>\r
3938                                   </clade>\r
3939                                   <clade>\r
3940                                     <taxonomy>\r
3941                                       <id provider="uniprot">4577</id>\r
3942                                       <code>MAIZE</code>\r
3943                                       <scientific_name>Zea mays</scientific_name>\r
3944                                       <common_name>Maize</common_name>\r
3945                                       <rank>species</rank>\r
3946                                     </taxonomy>\r
3947                                   </clade>\r
3948                                 </clade>\r
3949                                 <clade>\r
3950                                   <taxonomy>\r
3951                                     <id provider="uniprot">147428</id>\r
3952                                     <scientific_name>Paniceae</scientific_name>\r
3953                                     <rank>tribe</rank>\r
3954                                   </taxonomy>\r
3955                                   <clade>\r
3956                                     <taxonomy>\r
3957                                       <id provider="uniprot">38727</id>\r
3958                                       <code>PANVG</code>\r
3959                                       <scientific_name>Panicum virgatum</scientific_name>\r
3960                                       <common_name>switchgrass</common_name>\r
3961                                       <rank>species</rank>\r
3962                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
3963                                     </taxonomy>\r
3964                                   </clade>\r
3965                                   <clade>\r
3966                                     <taxonomy>\r
3967                                       <id provider="uniprot">4555</id>\r
3968                                       <code>SETIT</code>\r
3969                                       <scientific_name>Setaria italica</scientific_name>\r
3970                                       <common_name>Foxtail millet</common_name>\r
3971                                       <synonym>Panicum italicum</synonym>\r
3972                                       <rank>species</rank>\r
3973                                       <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
3974                                     </taxonomy>\r
3975                                   </clade>\r
3976                                 </clade>\r
3977                               </clade>\r
3978                               <clade>\r
3979                                 <taxonomy>\r
3980                                   <id provider="uniprot">359160</id>\r
3981                                   <scientific_name>BEP clade</scientific_name>\r
3982                                 </taxonomy>\r
3983                                 <clade>\r
3984                                   <taxonomy>\r
3985                                     <id provider="uniprot">4527</id>\r
3986                                     <scientific_name>Oryza</scientific_name>\r
3987                                     <rank>genus</rank>\r
3988                                   </taxonomy>\r
3989                                   <clade>\r
3990                                     <taxonomy>\r
3991                                       <id provider="uniprot">4530</id>\r
3992                                       <code>ORYSA</code>\r
3993                                       <scientific_name>Oryza sativa</scientific_name>\r
3994                                       <common_name>Rice</common_name>\r
3995                                       <rank>species</rank>\r
3996                                     </taxonomy>\r
3997                                   </clade>\r
3998                                   <clade>\r
3999                                     <taxonomy>\r
4000                                       <id provider="uniprot">39947</id>\r
4001                                       <code>ORYSJ</code>\r
4002                                       <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
4003                                       <common_name>Rice</common_name>\r
4004                                     </taxonomy>\r
4005                                   </clade>\r
4006                                 </clade>\r
4007                                 <clade>\r
4008                                   <taxonomy>\r
4009                                     <id provider="uniprot">15368</id>\r
4010                                     <code>BRADI</code>\r
4011                                     <scientific_name>Brachypodium distachyon</scientific_name>\r
4012                                     <common_name>Purple false brome</common_name>\r
4013                                     <synonym>Trachynia distachya</synonym>\r
4014                                     <rank>species</rank>\r
4015                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>\r
4016                                   </taxonomy>\r
4017                                 </clade>\r
4018                               </clade>\r
4019                             </clade>\r
4020                             <clade>\r
4021                               <taxonomy>\r
4022                                 <id provider="uniprot">4641</id>\r
4023                                 <code>MUSAC</code>\r
4024                                 <scientific_name>Musa acuminata</scientific_name>\r
4025                                 <common_name>Banana</common_name>\r
4026                                 <synonym>Musa cavendishii</synonym>\r
4027                                 <rank>species</rank>\r
4028                                 <uri>http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg</uri>\r
4029                               </taxonomy>\r
4030                             </clade>\r
4031                           </clade>\r
4032                         </clade>\r
4033                         <clade>\r
4034                           <taxonomy>\r
4035                             <id provider="uniprot">3329</id>\r
4036                             <code>PICAB</code>\r
4037                             <scientific_name>Picea abies</scientific_name>\r
4038                             <authority>H.Karst</authority>\r
4039                             <common_name>Norway spruce</common_name>\r
4040                             <synonym>Picea excelsa</synonym>\r
4041                             <rank>species</rank>\r
4042                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>\r
4043                           </taxonomy>\r
4044                         </clade>\r
4045                       </clade>\r
4046                       <clade>\r
4047                         <taxonomy>\r
4048                           <id provider="uniprot">88036</id>\r
4049                           <code>SELML</code>\r
4050                           <scientific_name>Selaginella moellendorffii</scientific_name>\r
4051                           <authority>Hieron</authority>\r
4052                           <common_name>Spikemoss</common_name>\r
4053                           <rank>species</rank>\r
4054                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>\r
4055                         </taxonomy>\r
4056                       </clade>\r
4057                     </clade>\r
4058                     <clade>\r
4059                       <taxonomy>\r
4060                         <id provider="uniprot">145481</id>\r
4061                         <code>PHYPA</code>\r
4062                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
4063                         <common_name>Moss</common_name>\r
4064                         <rank>subspecies</rank>\r
4065                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>\r
4066                       </taxonomy>\r
4067                     </clade>\r
4068                   </clade>\r
4069                   <clade>\r
4070                     <taxonomy>\r
4071                       <id provider="uniprot">3041</id>\r
4072                       <scientific_name>Chlorophyta</scientific_name>\r
4073                       <rank>phylum</rank>\r
4074                     </taxonomy>\r
4075                     <clade>\r
4076                       <taxonomy>\r
4077                         <id provider="uniprot">13792</id>\r
4078                         <scientific_name>Mamiellales</scientific_name>\r
4079                         <rank>order</rank>\r
4080                       </taxonomy>\r
4081                       <clade>\r
4082                         <taxonomy>\r
4083                           <id provider="uniprot">70447</id>\r
4084                           <scientific_name>Ostreococcus</scientific_name>\r
4085                           <rank>genus</rank>\r
4086                         </taxonomy>\r
4087                         <clade>\r
4088                           <taxonomy>\r
4089                             <id provider="uniprot">436017</id>\r
4090                             <code>OSTLU</code>\r
4091                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
4092                           </taxonomy>\r
4093                         </clade>\r
4094                         <clade>\r
4095                           <taxonomy>\r
4096                             <id provider="uniprot">385169</id>\r
4097                             <code>ORCXX</code>\r
4098                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>\r
4099                             <rank>species</rank>\r
4100                           </taxonomy>\r
4101                         </clade>\r
4102                         <clade>\r
4103                           <taxonomy>\r
4104                             <id provider="uniprot">70448</id>\r
4105                             <code>OSTTA</code>\r
4106                             <scientific_name>Ostreococcus tauri</scientific_name>\r
4107                             <rank>species</rank>\r
4108                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>\r
4109                           </taxonomy>\r
4110                         </clade>\r
4111                       </clade>\r
4112                       <clade>\r
4113                         <taxonomy>\r
4114                           <id provider="uniprot">38832</id>\r
4115                           <scientific_name>Micromonas</scientific_name>\r
4116                           <rank>genus</rank>\r
4117                         </taxonomy>\r
4118                         <clade>\r
4119                           <taxonomy>\r
4120                             <id provider="uniprot">564608</id>\r
4121                             <code>MICPC</code>\r
4122                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
4123                             <common_name>Picoplanktonic green alga</common_name>\r
4124                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>\r
4125                           </taxonomy>\r
4126                         </clade>\r
4127                         <clade>\r
4128                           <taxonomy>\r
4129                             <id provider="uniprot">296587</id>\r
4130                             <code>MICSR</code>\r
4131                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
4132                             <common_name>Picoplanktonic green alga</common_name>\r
4133                             <synonym>Micromonas sp. RCC299</synonym>\r
4134                             <rank>species</rank>\r
4135                           </taxonomy>\r
4136                         </clade>\r
4137                       </clade>\r
4138                     </clade>\r
4139                     <clade>\r
4140                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
4141                       <clade>\r
4142                         <taxonomy>\r
4143                           <id provider="uniprot">75966</id>\r
4144                           <scientific_name>Trebouxiophyceae</scientific_name>\r
4145                           <rank>class</rank>\r
4146                         </taxonomy>\r
4147                         <clade>\r
4148                           <taxonomy>\r
4149                             <id provider="uniprot">763042</id>\r
4150                             <code>ASCXX</code>\r
4151                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
4152                             <rank>species</rank>\r
4153                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
4154                           </taxonomy>\r
4155                         </clade>\r
4156                         <clade>\r
4157                           <taxonomy>\r
4158                             <id provider="uniprot">554065</id>\r
4159                             <code>CHLVA</code>\r
4160                             <scientific_name>Chlorella variabilis</scientific_name>\r
4161                             <authority>Shihira &amp; Krauss 1965</authority>\r
4162                             <synonym>Chlorella sp. NC64A</synonym>\r
4163                             <synonym>Chlorella sp. Bnd1-ZK</synonym>\r
4164                             <rank>species</rank>\r
4165                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>\r
4166                           </taxonomy>\r
4167                         </clade>\r
4168                         <clade>\r
4169                           <taxonomy>\r
4170                             <id provider="uniprot">574566</id>\r
4171                             <code>CSUXX</code>\r
4172                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>\r
4173                             <synonym>Chlorella vulgaris C-169</synonym>\r
4174                             <synonym>Coccomyxa sp. C-169</synonym>\r
4175                             <rank>species</rank>\r
4176                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>\r
4177                           </taxonomy>\r
4178                         </clade>\r
4179                       </clade>\r
4180                       <clade>\r
4181                         <taxonomy>\r
4182                           <id provider="uniprot">3042</id>\r
4183                           <scientific_name>Chlamydomonadales</scientific_name>\r
4184                           <rank>order</rank>\r
4185                         </taxonomy>\r
4186                         <clade>\r
4187                           <taxonomy>\r
4188                             <id provider="uniprot">3055</id>\r
4189                             <code>CHLRE</code>\r
4190                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
4191                             <synonym>Chlamydomonas smithii</synonym>\r
4192                             <rank>species</rank>\r
4193                           </taxonomy>\r
4194                         </clade>\r
4195                         <clade>\r
4196                           <taxonomy>\r
4197                             <id provider="uniprot">3067</id>\r
4198                             <code>VOLCA</code>\r
4199                             <scientific_name>Volvox carteri</scientific_name>\r
4200                             <common_name>Green alga</common_name>\r
4201                             <rank>species</rank>\r
4202                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>\r
4203                           </taxonomy>\r
4204                         </clade>\r
4205                       </clade>\r
4206                     </clade>\r
4207                   </clade>\r
4208                 </clade>\r
4209                 <clade>\r
4210                   <taxonomy>\r
4211                     <id provider="uniprot">2763</id>\r
4212                     <scientific_name>Rhodophyta</scientific_name>\r
4213                     <common_name>red algae</common_name>\r
4214                   </taxonomy>\r
4215                   <clade>\r
4216                     <taxonomy>\r
4217                       <id provider="uniprot">265316</id>\r
4218                       <scientific_name>Cyanidiaceae</scientific_name>\r
4219                       <rank>family</rank>\r
4220                     </taxonomy>\r
4221                     <clade>\r
4222                       <taxonomy>\r
4223                         <id provider="uniprot">45157</id>\r
4224                         <code>CYAME</code>\r
4225                         <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
4226                         <common_name>Red alga</common_name>\r
4227                         <rank>species</rank>\r
4228                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>\r
4229                       </taxonomy>\r
4230                     </clade>\r
4231                     <clade>\r
4232                       <taxonomy>\r
4233                         <id provider="uniprot">130081</id>\r
4234                         <code>GALSU</code>\r
4235                         <scientific_name>Galdieria sulphuraria</scientific_name>\r
4236                         <common_name>Red alga</common_name>\r
4237                         <rank>species</rank>\r
4238                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>\r
4239                       </taxonomy>\r
4240                     </clade>\r
4241                   </clade>\r
4242                   <clade>\r
4243                     <taxonomy>\r
4244                       <id provider="uniprot">2769</id>\r
4245                       <code>CHOCR</code>\r
4246                       <scientific_name>Chondrus crispus</scientific_name>\r
4247                       <common_name>Carragheen moss</common_name>\r
4248                       <rank>species</rank>\r
4249                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>\r
4250                     </taxonomy>\r
4251                   </clade>\r
4252                 </clade>\r
4253                 <clade>\r
4254                   <taxonomy>\r
4255                     <id provider="uniprot">38254</id>\r
4256                     <scientific_name>Glaucocystophyceae</scientific_name>\r
4257                     <synonym>Glaucophyta</synonym>\r
4258                     <rank>class</rank>\r
4259                   </taxonomy>\r
4260                   <clade>\r
4261                     <taxonomy>\r
4262                       <id provider="uniprot">2762</id>\r
4263                       <code>CYAPA</code>\r
4264                       <scientific_name>Cyanophora paradoxa</scientific_name>\r
4265                       <rank>species</rank>\r
4266                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>\r
4267                     </taxonomy>\r
4268                   </clade>\r
4269                   <clade>\r
4270                     <taxonomy>\r
4271                       <id provider="uniprot">38271</id>\r
4272                       <scientific_name>Glaucocystis nostochinearum</scientific_name>\r
4273                       <rank>species</rank>\r
4274                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>\r
4275                     </taxonomy>\r
4276                   </clade>\r
4277                 </clade>\r
4278               </clade>\r
4279               <clade>\r
4280                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>\r
4281                 <clade>\r
4282                   <taxonomy>\r
4283                     <id provider="uniprot">2903</id>\r
4284                     <code>EMIHU</code>\r
4285                     <scientific_name>Emiliania huxleyi</scientific_name>\r
4286                     <rank>species</rank>\r
4287                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>\r
4288                   </taxonomy>\r
4289                 </clade>\r
4290                 <clade>\r
4291                   <taxonomy>\r
4292                     <id provider="uniprot">55529</id>\r
4293                     <code>GUITH</code>\r
4294                     <scientific_name>Guillardia theta</scientific_name>\r
4295                     <synonym>Cryptomonas phi</synonym>\r
4296                     <rank>species</rank>\r
4297                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>\r
4298                   </taxonomy>\r
4299                   <reference doi="10.1016/j.cub.2007.03.069">\r
4300                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>\r
4301                   </reference>\r
4302                   <reference>\r
4303                   </reference>\r
4304                 </clade>\r
4305               </clade>\r
4306             </clade>\r
4307             <clade>\r
4308               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>\r
4309               <reference doi="10.1186/1471-2148-10-377">\r
4310                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>\r
4311               </reference>\r
4312               <reference>\r
4313               </reference>\r
4314               <clade>\r
4315                 <name>Stramenopiles &amp; Alveolata</name>\r
4316                 <clade>\r
4317                   <taxonomy>\r
4318                     <id provider="uniprot">33630</id>\r
4319                     <scientific_name>Alveolata</scientific_name>\r
4320                     <rank>superphylum</rank>\r
4321                   </taxonomy>\r
4322                   <clade>\r
4323                     <name>Apicomplexa &amp; Dinophyceae</name>\r
4324                     <clade>\r
4325                       <taxonomy>\r
4326                         <id provider="uniprot">5794</id>\r
4327                         <scientific_name>Apicomplexa</scientific_name>\r
4328                         <rank>phylum</rank>\r
4329                       </taxonomy>\r
4330                       <reference doi="10.1101/gr.083386.108">\r
4331                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>\r
4332                       </reference>\r
4333                       <reference>\r
4334                       </reference>\r
4335                       <clade>\r
4336                         <name>Aconoidasida &amp; Coccidia</name>\r
4337                         <clade>\r
4338                           <taxonomy>\r
4339                             <id provider="uniprot">422676</id>\r
4340                             <scientific_name>Aconoidasida</scientific_name>\r
4341                             <authority>Mehlhorn et al. 1980</authority>\r
4342                             <synonym>Hematozoa</synonym>\r
4343                             <rank>class</rank>\r
4344                           </taxonomy>\r
4345                           <clade>\r
4346                             <taxonomy>\r
4347                               <id provider="uniprot">5820</id>\r
4348                               <scientific_name>Plasmodium</scientific_name>\r
4349                               <rank>genus</rank>\r
4350                             </taxonomy>\r
4351                             <clade>\r
4352                               <taxonomy>\r
4353                                 <id provider="uniprot">5825</id>\r
4354                                 <code>PLACH</code>\r
4355                                 <scientific_name>Plasmodium chabaudi</scientific_name>\r
4356                                 <rank>species</rank>\r
4357                               </taxonomy>\r
4358                             </clade>\r
4359                             <clade>\r
4360                               <taxonomy>\r
4361                                 <id provider="uniprot">5833</id>\r
4362                                 <code>PLAFA</code>\r
4363                                 <scientific_name>Plasmodium falciparum</scientific_name>\r
4364                                 <rank>species</rank>\r
4365                               </taxonomy>\r
4366                             </clade>\r
4367                             <clade>\r
4368                               <taxonomy>\r
4369                                 <id provider="uniprot">73239</id>\r
4370                                 <code>PLAYO</code>\r
4371                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
4372                                 <rank>subspecies</rank>\r
4373                               </taxonomy>\r
4374                             </clade>\r
4375                           </clade>\r
4376                           <clade>\r
4377                             <taxonomy>\r
4378                               <scientific_name>Piroplasmida</scientific_name>\r
4379                               <rank>order</rank>\r
4380                             </taxonomy>\r
4381                             <clade>\r
4382                               <name>Theileria</name>\r
4383                               <taxonomy>\r
4384                                 <id provider="uniprot">5873</id>\r
4385                                 <scientific_name>Theileria</scientific_name>\r
4386                                 <rank>genus</rank>\r
4387                               </taxonomy>\r
4388                               <clade>\r
4389                                 <taxonomy>\r
4390                                   <id provider="uniprot">5874</id>\r
4391                                   <code>THEAN</code>\r
4392                                   <scientific_name>Theileria annulata</scientific_name>\r
4393                                   <rank>species</rank>\r
4394                                 </taxonomy>\r
4395                               </clade>\r
4396                               <clade>\r
4397                                 <taxonomy>\r
4398                                   <id provider="uniprot">5875</id>\r
4399                                   <code>THEPA</code>\r
4400                                   <scientific_name>Theileria parva</scientific_name>\r
4401                                   <rank>species</rank>\r
4402                                 </taxonomy>\r
4403                               </clade>\r
4404                             </clade>\r
4405                             <clade>\r
4406                               <taxonomy>\r
4407                                 <id provider="uniprot">5865</id>\r
4408                                 <code>BABBO</code>\r
4409                                 <scientific_name>Babesia bovis</scientific_name>\r
4410                                 <rank>species</rank>\r
4411                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>\r
4412                               </taxonomy>\r
4413                             </clade>\r
4414                           </clade>\r
4415                         </clade>\r
4416                         <clade>\r
4417                           <taxonomy>\r
4418                             <id provider="uniprot">5796</id>\r
4419                             <scientific_name>Coccidia</scientific_name>\r
4420                             <common_name>coccidians</common_name>\r
4421                             <rank>subclass</rank>\r
4422                           </taxonomy>\r
4423                           <reference doi="10.1093/molbev/msn213">\r
4424                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
4425                           </reference>\r
4426                           <reference>\r
4427                           </reference>\r
4428                           <clade>\r
4429                             <taxonomy>\r
4430                               <id provider="uniprot">5802</id>\r
4431                               <code>EIMTE</code>\r
4432                               <scientific_name>Eimeria tenella</scientific_name>\r
4433                               <common_name>Coccidian parasite</common_name>\r
4434                               <rank>species</rank>\r
4435                               <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
4436                             </taxonomy>\r
4437                           </clade>\r
4438                           <clade>\r
4439                             <taxonomy>\r
4440                               <id provider="uniprot">5811</id>\r
4441                               <code>TOXGO</code>\r
4442                               <scientific_name>Toxoplasma gondii</scientific_name>\r
4443                               <rank>species</rank>\r
4444                             </taxonomy>\r
4445                           </clade>\r
4446                         </clade>\r
4447                       </clade>\r
4448                       <clade>\r
4449                         <taxonomy>\r
4450                           <id provider="uniprot">5806</id>\r
4451                           <scientific_name>Cryptosporidium</scientific_name>\r
4452                           <rank>genus</rank>\r
4453                         </taxonomy>\r
4454                         <clade>\r
4455                           <taxonomy>\r
4456                             <id provider="uniprot">237895</id>\r
4457                             <code>CRYHO</code>\r
4458                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
4459                             <rank>species</rank>\r
4460                           </taxonomy>\r
4461                         </clade>\r
4462                         <clade>\r
4463                           <taxonomy>\r
4464                             <id provider="uniprot">5807</id>\r
4465                             <code>CRYPV</code>\r
4466                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
4467                             <rank>species</rank>\r
4468                           </taxonomy>\r
4469                         </clade>\r
4470                       </clade>\r
4471                     </clade>\r
4472                     <clade>\r
4473                       <taxonomy>\r
4474                         <id provider="uniprot">2864</id>\r
4475                         <scientific_name>Dinophyceae</scientific_name>\r
4476                         <authority>Fritsch, 1927</authority>\r
4477                         <common_name>dinoflagellates</common_name>\r
4478                         <synonym>Chromophyta</synonym>\r
4479                         <synonym>Dinoflagellata</synonym>\r
4480                         <synonym>Pyrrophyta</synonym>\r
4481                         <rank>class</rank>\r
4482                       </taxonomy>\r
4483                       <clade>\r
4484                         <taxonomy>\r
4485                           <id provider="uniprot">2866</id>\r
4486                           <code>CRYCO</code>\r
4487                           <scientific_name>Crypthecodinium cohnii</scientific_name>\r
4488                           <common_name>Dinoflagellate</common_name>\r
4489                           <rank>species</rank>\r
4490                           <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>\r
4491                         </taxonomy>\r
4492                       </clade>\r
4493                       <clade>\r
4494                         <taxonomy>\r
4495                           <id provider="uniprot">2923</id>\r
4496                           <code>THOHE</code>\r
4497                           <scientific_name>Thoracosphaera heimii</scientific_name>\r
4498                           <common_name>Dinoflagellate</common_name>\r
4499                           <rank>species</rank>\r
4500                           <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>\r
4501                         </taxonomy>\r
4502                       </clade>\r
4503                     </clade>\r
4504                   </clade>\r
4505                   <clade>\r
4506                     <taxonomy>\r
4507                       <id provider="uniprot">5878</id>\r
4508                       <scientific_name>Ciliophora</scientific_name>\r
4509                       <common_name>ciliates</common_name>\r
4510                       <rank>phylum</rank>\r
4511                     </taxonomy>\r
4512                     <clade>\r
4513                       <taxonomy>\r
4514                         <id provider="uniprot">431838</id>\r
4515                         <scientific_name>Intramacronucleata</scientific_name>\r
4516                         <rank>subphylum</rank>\r
4517                       </taxonomy>\r
4518                       <clade>\r
4519                         <taxonomy>\r
4520                           <id provider="uniprot">6020</id>\r
4521                           <scientific_name>Oligohymenophorea</scientific_name>\r
4522                           <rank>class</rank>\r
4523                         </taxonomy>\r
4524                         <clade>\r
4525                           <taxonomy>\r
4526                             <id provider="uniprot">5888</id>\r
4527                             <code>PARTE</code>\r
4528                             <scientific_name>Paramecium tetraurelia</scientific_name>\r
4529                             <rank>species</rank>\r
4530                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>\r
4531                           </taxonomy>\r
4532                         </clade>\r
4533                         <clade>\r
4534                           <taxonomy>\r
4535                             <id provider="uniprot">5911</id>\r
4536                             <code>TETTH</code>\r
4537                             <scientific_name>Tetrahymena thermophila</scientific_name>\r
4538                             <rank>species</rank>\r
4539                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>\r
4540                           </taxonomy>\r
4541                         </clade>\r
4542                       </clade>\r
4543                       <clade>\r
4544                         <taxonomy>\r
4545                           <id provider="uniprot">1172189</id>\r
4546                           <code>OTRXX</code>\r
4547                           <scientific_name>Oxytricha trifallax</scientific_name>\r
4548                           <authority>Stein, 1859</authority>\r
4549                           <rank>species</rank>\r
4550                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>\r
4551                         </taxonomy>\r
4552                       </clade>\r
4553                     </clade>\r
4554                     <clade>\r
4555                       <taxonomy>\r
4556                         <id provider="uniprot">5961</id>\r
4557                         <code>BLEJA</code>\r
4558                         <scientific_name>Blepharisma japonicum</scientific_name>\r
4559                         <rank>species</rank>\r
4560                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>\r
4561                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>\r
4562                       </taxonomy>\r
4563                     </clade>\r
4564                   </clade>\r
4565                 </clade>\r
4566                 <clade>\r
4567                   <taxonomy>\r
4568                     <id provider="uniprot">33634</id>\r
4569                     <scientific_name>Stramenopiles</scientific_name>\r
4570                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>\r
4571                     <synonym>Chromophyta</synonym>\r
4572                     <synonym>heterokonts</synonym>\r
4573                   </taxonomy>\r
4574                   <clade>\r
4575                     <name>Pelagophyceae &amp; Bacillariophyta &amp; Oomycetes</name>\r
4576                     <reference doi="10.1016/j.protis.2008.11.004">\r
4577                       <desc>Seven Gene Phylogeny of Heterokonts</desc>\r
4578                     </reference>\r
4579                     <reference>\r
4580                     </reference>\r
4581                     <clade>\r
4582                       <name>Pelagophyceae &amp; Bacillariophyta</name>\r
4583                       <clade>\r
4584                         <taxonomy>\r
4585                           <id provider="uniprot">2836</id>\r
4586                           <scientific_name>Bacillariophyta</scientific_name>\r
4587                           <common_name>diatoms</common_name>\r
4588                           <rank>phylum</rank>\r
4589                         </taxonomy>\r
4590                         <clade>\r
4591                           <taxonomy>\r
4592                             <id provider="uniprot">33850</id>\r
4593                             <scientific_name>Bacillariophycidae</scientific_name>\r
4594                           </taxonomy>\r
4595                           <clade>\r
4596                             <taxonomy>\r
4597                               <id provider="uniprot">186039</id>\r
4598                               <code>FRACY</code>\r
4599                               <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
4600                               <authority>Krieger</authority>\r
4601                               <synonym>Nitzschia cylindrus</synonym>\r
4602                               <rank>species</rank>\r
4603                               <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>\r
4604                             </taxonomy>\r
4605                           </clade>\r
4606                           <clade>\r
4607                             <taxonomy>\r
4608                               <id provider="uniprot">2850</id>\r
4609                               <code>PHATR</code>\r
4610                               <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
4611                               <authority>Bohlin</authority>\r
4612                               <rank>species</rank>\r
4613                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>\r
4614                             </taxonomy>\r
4615                           </clade>\r
4616                         </clade>\r
4617                         <clade>\r
4618                           <taxonomy>\r
4619                             <id provider="uniprot">35128</id>\r
4620                             <code>THAPS</code>\r
4621                             <scientific_name>Thalassiosira pseudonana</scientific_name>\r
4622                             <authority>Hasle &amp; Heimdal</authority>\r
4623                             <common_name>Marine diatom</common_name>\r
4624                             <synonym>Cyclotella nana</synonym>\r
4625                             <rank>species</rank>\r
4626                             <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>\r
4627                           </taxonomy>\r
4628                         </clade>\r
4629                       </clade>\r
4630                       <clade>\r
4631                         <taxonomy>\r
4632                           <id provider="uniprot">44056</id>\r
4633                           <code>AURAN</code>\r
4634                           <scientific_name>Aureococcus anophagefferens</scientific_name>\r
4635                           <authority>Hargraves &amp; Sieburth</authority>\r
4636                           <common_name>Harmful bloom alga</common_name>\r
4637                           <rank>species</rank>\r
4638                           <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>\r
4639                         </taxonomy>\r
4640                       </clade>\r
4641                     </clade>\r
4642                     <clade>\r
4643                       <taxonomy>\r
4644                         <id provider="uniprot">4783</id>\r
4645                         <scientific_name>Phytophthora</scientific_name>\r
4646                         <rank>genus</rank>\r
4647                       </taxonomy>\r
4648                       <clade>\r
4649                         <taxonomy>\r
4650                           <id provider="uniprot">4787</id>\r
4651                           <code>PHYIN</code>\r
4652                           <scientific_name>Phytophthora infestans</scientific_name>\r
4653                           <authority>(Mont.) de Bary 1876</authority>\r
4654                           <common_name>Potato late blight fungus</common_name>\r
4655                           <rank>species</rank>\r
4656                           <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>\r
4657                         </taxonomy>\r
4658                       </clade>\r
4659                       <clade>\r
4660                         <taxonomy>\r
4661                           <id provider="uniprot">164328</id>\r
4662                           <code>PHYRM</code>\r
4663                           <scientific_name>Phytophthora ramorum</scientific_name>\r
4664                           <common_name>Sudden oak death agent</common_name>\r
4665                           <rank>species</rank>\r
4666                           <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>\r
4667                         </taxonomy>\r
4668                       </clade>\r
4669                       <clade>\r
4670                         <taxonomy>\r
4671                           <id provider="uniprot">67593</id>\r
4672                           <code>PHYSO</code>\r
4673                           <scientific_name>Phytophthora sojae</scientific_name>\r
4674                           <common_name>Soybean stem and root rot agent</common_name>\r
4675                           <synonym>Phytophthora megasperma f. sp. glycines</synonym>\r
4676                           <rank>species</rank>\r
4677                           <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>\r
4678                         </taxonomy>\r
4679                       </clade>\r
4680                       <clade>\r
4681                         <taxonomy>\r
4682                           <id provider="uniprot">4785</id>\r
4683                           <code>PHYCI</code>\r
4684                           <scientific_name>Phytophthora cinnamomi</scientific_name>\r
4685                           <common_name>Cinnamon fungus</common_name>\r
4686                           <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>\r
4687                         </taxonomy>\r
4688                       </clade>\r
4689                     </clade>\r
4690                   </clade>\r
4691                   <clade>\r
4692                     <taxonomy>\r
4693                       <id provider="uniprot">33674</id>\r
4694                       <scientific_name>Thraustochytriaceae</scientific_name>\r
4695                       <synonym>Thraustochytriales</synonym>\r
4696                       <rank>family</rank>\r
4697                     </taxonomy>\r
4698                     <clade>\r
4699                       <taxonomy>\r
4700                         <id provider="uniprot">702273</id>\r
4701                         <code>AKEXX</code>\r
4702                         <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>\r
4703                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>\r
4704                       </taxonomy>\r
4705                     </clade>\r
4706                     <clade>\r
4707                       <taxonomy>\r
4708                         <id provider="uniprot">876976</id>\r
4709                         <code>SAGXX</code>\r
4710                         <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>\r
4711                         <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>\r
4712                       </taxonomy>\r
4713                     </clade>\r
4714                     <clade>\r
4715                       <taxonomy>\r
4716                         <id provider="uniprot">87102</id>\r
4717                         <code>ALIXX</code>\r
4718                         <scientific_name>Aurantiochytrium limacinum</scientific_name>\r
4719                         <synonym>Schizochytrium limacinum</synonym>\r
4720                         <rank>species</rank>\r
4721                         <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>\r
4722                       </taxonomy>\r
4723                     </clade>\r
4724                   </clade>\r
4725                 </clade>\r
4726               </clade>\r
4727               <clade>\r
4728                 <taxonomy>\r
4729                   <id provider="uniprot">543769</id>\r
4730                   <scientific_name>Rhizaria</scientific_name>\r
4731                 </taxonomy>\r
4732                 <clade>\r
4733                   <taxonomy>\r
4734                     <id provider="uniprot">71427</id>\r
4735                     <scientific_name>Allogromia laticollaris</scientific_name>\r
4736                     <rank>species</rank>\r
4737                     <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
4738                   </taxonomy>\r
4739                 </clade>\r
4740                 <clade>\r
4741                   <taxonomy>\r
4742                     <id provider="uniprot">227086</id>\r
4743                     <code>BIGNA</code>\r
4744                     <scientific_name>Bigelowiella natans</scientific_name>\r
4745                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>\r
4746                     <synonym>Pedinomonas minutissima</synonym>\r
4747                     <rank>species</rank>\r
4748                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>\r
4749                   </taxonomy>\r
4750                 </clade>\r
4751               </clade>\r
4752             </clade>\r
4753           </clade>\r
4754           <clade>\r
4755             <name>Excavata</name>\r
4756             <reference doi="10.1038/nature04546">\r
4757             </reference>\r
4758             <clade>\r
4759               <name>Kinetoplastida &amp; Heterolobosea</name>\r
4760               <clade>\r
4761                 <taxonomy>\r
4762                   <id provider="uniprot">5654</id>\r
4763                   <scientific_name>Trypanosomatidae</scientific_name>\r
4764                   <rank>family</rank>\r
4765                 </taxonomy>\r
4766                 <clade>\r
4767                   <taxonomy>\r
4768                     <id provider="uniprot">5690</id>\r
4769                     <scientific_name>Trypanosoma</scientific_name>\r
4770                     <rank>genus</rank>\r
4771                   </taxonomy>\r
4772                   <clade>\r
4773                     <taxonomy>\r
4774                       <id provider="uniprot">5702</id>\r
4775                       <code>TRYBB</code>\r
4776                       <scientific_name>Trypanosoma brucei brucei</scientific_name>\r
4777                       <rank>subspecies</rank>\r
4778                     </taxonomy>\r
4779                   </clade>\r
4780                   <clade>\r
4781                     <taxonomy>\r
4782                       <id provider="uniprot">5693</id>\r
4783                       <code>TRYCR</code>\r
4784                       <scientific_name>Trypanosoma cruzi</scientific_name>\r
4785                       <rank>species</rank>\r
4786                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>\r
4787                     </taxonomy>\r
4788                   </clade>\r
4789                 </clade>\r
4790                 <clade>\r
4791                   <taxonomy>\r
4792                     <id provider="uniprot">5664</id>\r
4793                     <code>LEIMA</code>\r
4794                     <scientific_name>Leishmania major</scientific_name>\r
4795                     <rank>species</rank>\r
4796                   </taxonomy>\r
4797                 </clade>\r
4798               </clade>\r
4799               <clade>\r
4800                 <taxonomy>\r
4801                   <id provider="uniprot">5762</id>\r
4802                   <code>NAEGR</code>\r
4803                   <scientific_name>Naegleria gruberi</scientific_name>\r
4804                   <common_name>Amoeba</common_name>\r
4805                   <rank>species</rank>\r
4806                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>\r
4807                 </taxonomy>\r
4808               </clade>\r
4809             </clade>\r
4810             <clade>\r
4811               <name>Metamonada</name>\r
4812               <clade>\r
4813                 <taxonomy>\r
4814                   <id provider="uniprot">5741</id>\r
4815                   <code>GIALA</code>\r
4816                   <scientific_name>Giardia lamblia</scientific_name>\r
4817                   <synonym>Giardia intestinalis</synonym>\r
4818                   <synonym>Giardia lamblia</synonym>\r
4819                   <rank>species</rank>\r
4820                 </taxonomy>\r
4821               </clade>\r
4822               <clade>\r
4823                 <taxonomy>\r
4824                   <id provider="uniprot">5722</id>\r
4825                   <code>TRIVA</code>\r
4826                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
4827                   <rank>species</rank>\r
4828                 </taxonomy>\r
4829               </clade>\r
4830             </clade>\r
4831           </clade>\r
4832           <clade>\r
4833             <taxonomy>\r
4834               <id provider="uniprot">554296</id>\r
4835               <scientific_name>Apusozoa</scientific_name>\r
4836             </taxonomy>\r
4837             <reference doi="10.1016/j.protis.2008.06.002">\r
4838               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>\r
4839             </reference>\r
4840             <clade>\r
4841               <taxonomy>\r
4842                 <id provider="uniprot">554453</id>\r
4843                 <scientific_name>Planomonas micra</scientific_name>\r
4844                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>\r
4845                 <synonym>Apusomonadidae sp. micra</synonym>\r
4846                 <rank>species</rank>\r
4847               </taxonomy>\r
4848             </clade>\r
4849             <clade>\r
4850               <taxonomy>\r
4851                 <id provider="uniprot">529818</id>\r
4852                 <code>TTRXX</code>\r
4853                 <scientific_name>Thecamonas trahens</scientific_name>\r
4854                 <authority>Larsen &amp; Patterson 1990</authority>\r
4855                 <synonym>Amastigomonas trahens</synonym>\r
4856                 <rank>species</rank>\r
4857                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>\r
4858               </taxonomy>\r
4859             </clade>\r
4860           </clade>\r
4861         </clade>\r
4862       </clade>\r
4863       <clade>\r
4864         <name>Archaea</name>\r
4865         <taxonomy>\r
4866           <id provider="uniprot">2157</id>\r
4867           <scientific_name>Archaea</scientific_name>\r
4868           <rank>superkingdom</rank>\r
4869         </taxonomy>\r
4870         <clade>\r
4871           <name>a_62</name>\r
4872           <clade>\r
4873             <name>a_56</name>\r
4874             <clade>\r
4875               <taxonomy>\r
4876                 <id provider="uniprot">28890</id>\r
4877                 <scientific_name>Euryarchaeota</scientific_name>\r
4878                 <rank>phylum</rank>\r
4879               </taxonomy>\r
4880               <clade>\r
4881                 <name>a_44</name>\r
4882                 <clade>\r
4883                   <name>a_28</name>\r
4884                   <clade>\r
4885                     <name>a_26</name>\r
4886                     <clade>\r
4887                       <taxonomy>\r
4888                         <id provider="uniprot">224756</id>\r
4889                         <scientific_name>Methanomicrobia</scientific_name>\r
4890                         <rank>class</rank>\r
4891                       </taxonomy>\r
4892                       <clade>\r
4893                         <name>a_14</name>\r
4894                         <clade>\r
4895                           <name>a_12</name>\r
4896                           <clade>\r
4897                             <taxonomy>\r
4898                               <id provider="uniprot">2206</id>\r
4899                               <scientific_name>Methanosarcinaceae</scientific_name>\r
4900                               <rank>family</rank>\r
4901                             </taxonomy>\r
4902                             <clade>\r
4903                               <taxonomy>\r
4904                                 <id provider="uniprot">2207</id>\r
4905                                 <scientific_name>Methanosarcina</scientific_name>\r
4906                                 <rank>genus</rank>\r
4907                               </taxonomy>\r
4908                               <clade>\r
4909                                 <name>a_2</name>\r
4910                                 <clade>\r
4911                                   <taxonomy>\r
4912                                     <id provider="uniprot">2214</id>\r
4913                                     <code>METAC</code>\r
4914                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
4915                                     <rank>species</rank>\r
4916                                   </taxonomy>\r
4917                                 </clade>\r
4918                                 <clade>\r
4919                                   <taxonomy>\r
4920                                     <id provider="uniprot">269797</id>\r
4921                                     <code>METBF</code>\r
4922                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
4923                                   </taxonomy>\r
4924                                 </clade>\r
4925                               </clade>\r
4926                               <clade>\r
4927                                 <taxonomy>\r
4928                                   <id provider="uniprot">2209</id>\r
4929                                   <code>METMA</code>\r
4930                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
4931                                   <synonym>Methanosarcina frisia</synonym>\r
4932                                   <rank>species</rank>\r
4933                                 </taxonomy>\r
4934                               </clade>\r
4935                             </clade>\r
4936                             <clade>\r
4937                               <taxonomy>\r
4938                                 <id provider="uniprot">259564</id>\r
4939                                 <code>METBU</code>\r
4940                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
4941                               </taxonomy>\r
4942                             </clade>\r
4943                           </clade>\r
4944                           <clade>\r
4945                             <name>a_11</name>\r
4946                             <taxonomy>\r
4947                               <id provider="uniprot">2191</id>\r
4948                               <scientific_name>Methanomicrobiales</scientific_name>\r
4949                               <rank>order</rank>\r
4950                             </taxonomy>\r
4951                             <clade>\r
4952                               <name>a_9</name>\r
4953                               <clade>\r
4954                                 <taxonomy>\r
4955                                   <id provider="uniprot">456442</id>\r
4956                                   <code>METB6</code>\r
4957                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
4958                                 </taxonomy>\r
4959                               </clade>\r
4960                               <clade>\r
4961                                 <taxonomy>\r
4962                                   <id provider="uniprot">2203</id>\r
4963                                   <code>METHU</code>\r
4964                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
4965                                   <rank>species</rank>\r
4966                                 </taxonomy>\r
4967                               </clade>\r
4968                             </clade>\r
4969                             <clade>\r
4970                               <taxonomy>\r
4971                                 <id provider="uniprot">368407</id>\r
4972                                 <code>METMJ</code>\r
4973                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
4974                               </taxonomy>\r
4975                             </clade>\r
4976                           </clade>\r
4977                         </clade>\r
4978                         <clade>\r
4979                           <taxonomy>\r
4980                             <id provider="uniprot">410358</id>\r
4981                             <code>METLZ</code>\r
4982                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
4983                           </taxonomy>\r
4984                         </clade>\r
4985                       </clade>\r
4986                       <clade>\r
4987                         <taxonomy>\r
4988                           <id provider="uniprot">349307</id>\r
4989                           <code>METTP</code>\r
4990                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
4991                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
4992                         </taxonomy>\r
4993                       </clade>\r
4994                     </clade>\r
4995                     <clade>\r
4996                       <name>a_25</name>\r
4997                       <taxonomy>\r
4998                         <id provider="uniprot">2236</id>\r
4999                         <scientific_name>Halobacteriaceae</scientific_name>\r
5000                         <rank>family</rank>\r
5001                       </taxonomy>\r
5002                       <clade>\r
5003                         <name>a_23</name>\r
5004                         <clade>\r
5005                           <name>a_19</name>\r
5006                           <clade>\r
5007                             <taxonomy>\r
5008                               <id provider="uniprot">2238</id>\r
5009                               <code>HALMA</code>\r
5010                               <scientific_name>Haloarcula marismortui</scientific_name>\r
5011                               <synonym>Halobacterium marismortui</synonym>\r
5012                               <rank>species</rank>\r
5013                             </taxonomy>\r
5014                           </clade>\r
5015                           <clade>\r
5016                             <taxonomy>\r
5017                               <id provider="uniprot">2257</id>\r
5018                               <code>NATPH</code>\r
5019                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
5020                               <common_name>Natronobacterium pharaonis</common_name>\r
5021                               <rank>species</rank>\r
5022                             </taxonomy>\r
5023                           </clade>\r
5024                         </clade>\r
5025                         <clade>\r
5026                           <name>a_22</name>\r
5027                           <taxonomy>\r
5028                             <id provider="uniprot">2239</id>\r
5029                             <scientific_name>Halobacterium</scientific_name>\r
5030                             <rank>genus</rank>\r
5031                           </taxonomy>\r
5032                           <clade>\r
5033                             <taxonomy>\r
5034                               <id provider="uniprot">478009</id>\r
5035                               <code>HALS3</code>\r
5036                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
5037                             </taxonomy>\r
5038                           </clade>\r
5039                           <clade>\r
5040                             <taxonomy>\r
5041                               <id provider="uniprot">2243</id>\r
5042                               <code>HALSP</code>\r
5043                               <scientific_name>Halobacterium sp.</scientific_name>\r
5044                               <rank>species</rank>\r
5045                             </taxonomy>\r
5046                           </clade>\r
5047                         </clade>\r
5048                       </clade>\r
5049                       <clade>\r
5050                         <taxonomy>\r
5051                           <id provider="uniprot">362976</id>\r
5052                           <code>HALWD</code>\r
5053                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
5054                         </taxonomy>\r
5055                       </clade>\r
5056                     </clade>\r
5057                   </clade>\r
5058                   <clade>\r
5059                     <taxonomy>\r
5060                       <id provider="uniprot">2234</id>\r
5061                       <code>ARCFU</code>\r
5062                       <scientific_name>Archaeoglobus fulgidus</scientific_name>\r
5063                       <rank>species</rank>\r
5064                     </taxonomy>\r
5065                   </clade>\r
5066                 </clade>\r
5067                 <clade>\r
5068                   <name>a_43</name>\r
5069                   <clade>\r
5070                     <name>a_41</name>\r
5071                     <clade>\r
5072                       <name>a_35</name>\r
5073                       <taxonomy>\r
5074                         <id provider="uniprot">2182</id>\r
5075                         <scientific_name>Methanococcales</scientific_name>\r
5076                         <rank>order</rank>\r
5077                       </taxonomy>\r
5078                       <clade>\r
5079                         <name>a_31</name>\r
5080                         <clade>\r
5081                           <taxonomy>\r
5082                             <id provider="uniprot">2190</id>\r
5083                             <code>METJA</code>\r
5084                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
5085                             <synonym>Methanococcus jannaschii</synonym>\r
5086                             <rank>species</rank>\r
5087                           </taxonomy>\r
5088                         </clade>\r
5089                         <clade>\r
5090                           <taxonomy>\r
5091                             <id provider="uniprot">419665</id>\r
5092                             <code>META3</code>\r
5093                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
5094                           </taxonomy>\r
5095                         </clade>\r
5096                       </clade>\r
5097                       <clade>\r
5098                         <name>a_34</name>\r
5099                         <taxonomy>\r
5100                           <id provider="uniprot">2184</id>\r
5101                           <scientific_name>Methanococcus</scientific_name>\r
5102                           <rank>genus</rank>\r
5103                         </taxonomy>\r
5104                         <clade>\r
5105                           <taxonomy>\r
5106                             <id provider="uniprot">39152</id>\r
5107                             <code>METMP</code>\r
5108                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
5109                             <synonym>Methanococcus deltae</synonym>\r
5110                             <rank>species</rank>\r
5111                           </taxonomy>\r
5112                         </clade>\r
5113                         <clade>\r
5114                           <taxonomy>\r
5115                             <id provider="uniprot">406327</id>\r
5116                             <code>METVS</code>\r
5117                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
5118                           </taxonomy>\r
5119                         </clade>\r
5120                       </clade>\r
5121                     </clade>\r
5122                     <clade>\r
5123                       <name>a_40</name>\r
5124                       <taxonomy>\r
5125                         <id provider="uniprot">2159</id>\r
5126                         <scientific_name>Methanobacteriaceae</scientific_name>\r
5127                         <rank>family</rank>\r
5128                       </taxonomy>\r
5129                       <clade>\r
5130                         <name>a_38</name>\r
5131                         <clade>\r
5132                           <taxonomy>\r
5133                             <id provider="uniprot">420247</id>\r
5134                             <code>METS3</code>\r
5135                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
5136                           </taxonomy>\r
5137                         </clade>\r
5138                         <clade>\r
5139                           <taxonomy>\r
5140                             <id provider="uniprot">339860</id>\r
5141                             <code>METST</code>\r
5142                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
5143                           </taxonomy>\r
5144                         </clade>\r
5145                       </clade>\r
5146                       <clade>\r
5147                         <taxonomy>\r
5148                           <id provider="uniprot">187420</id>\r
5149                           <code>METTH</code>\r
5150                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
5151                         </taxonomy>\r
5152                       </clade>\r
5153                     </clade>\r
5154                   </clade>\r
5155                   <clade>\r
5156                     <taxonomy>\r
5157                       <id provider="uniprot">2320</id>\r
5158                       <code>METKA</code>\r
5159                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
5160                       <rank>species</rank>\r
5161                     </taxonomy>\r
5162                   </clade>\r
5163                 </clade>\r
5164               </clade>\r
5165               <clade>\r
5166                 <name>a_51</name>\r
5167                 <taxonomy>\r
5168                   <id provider="uniprot">2259</id>\r
5169                   <scientific_name>Thermococcaceae</scientific_name>\r
5170                   <rank>family</rank>\r
5171                 </taxonomy>\r
5172                 <clade>\r
5173                   <name>a_47</name>\r
5174                   <clade>\r
5175                     <taxonomy>\r
5176                       <id provider="uniprot">2261</id>\r
5177                       <code>PYRFU</code>\r
5178                       <scientific_name>Pyrococcus furiosus</scientific_name>\r
5179                       <rank>species</rank>\r
5180                     </taxonomy>\r
5181                   </clade>\r
5182                   <clade>\r
5183                     <taxonomy>\r
5184                       <id provider="uniprot">69014</id>\r
5185                       <code>PYRKO</code>\r
5186                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
5187                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>\r
5188                     </taxonomy>\r
5189                   </clade>\r
5190                 </clade>\r
5191                 <clade>\r
5192                   <name>a_50</name>\r
5193                   <taxonomy>\r
5194                     <id provider="uniprot">2260</id>\r
5195                     <scientific_name>Pyrococcus</scientific_name>\r
5196                     <rank>genus</rank>\r
5197                   </taxonomy>\r
5198                   <clade>\r
5199                     <taxonomy>\r
5200                       <id provider="uniprot">29292</id>\r
5201                       <code>PYRAB</code>\r
5202                       <scientific_name>Pyrococcus abyssi</scientific_name>\r
5203                       <rank>species</rank>\r
5204                     </taxonomy>\r
5205                   </clade>\r
5206                   <clade>\r
5207                     <taxonomy>\r
5208                       <id provider="uniprot">53953</id>\r
5209                       <code>PYRHO</code>\r
5210                       <scientific_name>Pyrococcus horikoshii</scientific_name>\r
5211                       <rank>species</rank>\r
5212                     </taxonomy>\r
5213                   </clade>\r
5214                 </clade>\r
5215               </clade>\r
5216             </clade>\r
5217             <clade>\r
5218               <name>a_55</name>\r
5219               <clade>\r
5220                 <taxonomy>\r
5221                   <id provider="uniprot">228908</id>\r
5222                   <code>NANEQ</code>\r
5223                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
5224                 </taxonomy>\r
5225               </clade>\r
5226               <clade>\r
5227                 <taxonomy>\r
5228                   <id provider="uniprot">436308</id>\r
5229                   <code>NITMS</code>\r
5230                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
5231                 </taxonomy>\r
5232               </clade>\r
5233             </clade>\r
5234           </clade>\r
5235           <clade>\r
5236             <taxonomy>\r
5237               <id provider="uniprot">2301</id>\r
5238               <scientific_name>Thermoplasmatales</scientific_name>\r
5239               <rank>order</rank>\r
5240             </taxonomy>\r
5241             <clade>\r
5242               <name>a_59</name>\r
5243               <taxonomy>\r
5244                 <id provider="uniprot">2302</id>\r
5245                 <scientific_name>Thermoplasma</scientific_name>\r
5246                 <rank>genus</rank>\r
5247               </taxonomy>\r
5248               <clade>\r
5249                 <taxonomy>\r
5250                   <id provider="uniprot">273075</id>\r
5251                   <code>THEAC</code>\r
5252                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
5253                 </taxonomy>\r
5254               </clade>\r
5255               <clade>\r
5256                 <taxonomy>\r
5257                   <id provider="uniprot">273116</id>\r
5258                   <code>THEVO</code>\r
5259                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
5260                 </taxonomy>\r
5261               </clade>\r
5262             </clade>\r
5263             <clade>\r
5264               <taxonomy>\r
5265                 <id provider="uniprot">263820</id>\r
5266                 <code>PICTO</code>\r
5267                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
5268               </taxonomy>\r
5269             </clade>\r
5270           </clade>\r
5271         </clade>\r
5272         <clade>\r
5273           <name>a_93</name>\r
5274           <clade>\r
5275             <taxonomy>\r
5276               <id provider="uniprot">183924</id>\r
5277               <scientific_name>Thermoprotei</scientific_name>\r
5278               <rank>class</rank>\r
5279             </taxonomy>\r
5280             <clade>\r
5281               <name>a_83</name>\r
5282               <clade>\r
5283                 <name>a_81</name>\r
5284                 <clade>\r
5285                   <name>a_73</name>\r
5286                   <taxonomy>\r
5287                     <id provider="uniprot">2267</id>\r
5288                     <scientific_name>Thermoproteaceae</scientific_name>\r
5289                     <rank>family</rank>\r
5290                   </taxonomy>\r
5291                   <clade>\r
5292                     <name>a_71</name>\r
5293                     <clade>\r
5294                       <name>a_67</name>\r
5295                       <taxonomy>\r
5296                         <id provider="uniprot">2276</id>\r
5297                         <scientific_name>Pyrobaculum</scientific_name>\r
5298                         <rank>genus</rank>\r
5299                       </taxonomy>\r
5300                       <clade>\r
5301                         <name>a_65</name>\r
5302                         <clade>\r
5303                           <taxonomy>\r
5304                             <id provider="uniprot">340102</id>\r
5305                             <code>PYRAR</code>\r
5306                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
5307                           </taxonomy>\r
5308                         </clade>\r
5309                         <clade>\r
5310                           <taxonomy>\r
5311                             <id provider="uniprot">410359</id>\r
5312                             <code>PYRCJ</code>\r
5313                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
5314                           </taxonomy>\r
5315                         </clade>\r
5316                       </clade>\r
5317                       <clade>\r
5318                         <taxonomy>\r
5319                           <id provider="uniprot">13773</id>\r
5320                           <code>PYRAE</code>\r
5321                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
5322                           <rank>species</rank>\r
5323                         </taxonomy>\r
5324                       </clade>\r
5325                     </clade>\r
5326                     <clade>\r
5327                       <name>a_70</name>\r
5328                       <clade>\r
5329                         <taxonomy>\r
5330                           <id provider="uniprot">384616</id>\r
5331                           <code>PYRIL</code>\r
5332                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
5333                         </taxonomy>\r
5334                       </clade>\r
5335                       <clade>\r
5336                         <taxonomy>\r
5337                           <id provider="uniprot">444157</id>\r
5338                           <code>THENV</code>\r
5339                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
5340                         </taxonomy>\r
5341                       </clade>\r
5342                     </clade>\r
5343                   </clade>\r
5344                   <clade>\r
5345                     <taxonomy>\r
5346                       <id provider="uniprot">397948</id>\r
5347                       <code>CALMQ</code>\r
5348                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
5349                     </taxonomy>\r
5350                   </clade>\r
5351                 </clade>\r
5352                 <clade>\r
5353                   <name>a_80</name>\r
5354                   <taxonomy>\r
5355                     <id provider="uniprot">118883</id>\r
5356                     <scientific_name>Sulfolobaceae</scientific_name>\r
5357                     <rank>family</rank>\r
5358                   </taxonomy>\r
5359                   <clade>\r
5360                     <name>a_78</name>\r
5361                     <taxonomy>\r
5362                       <id provider="uniprot">2284</id>\r
5363                       <scientific_name>Sulfolobus</scientific_name>\r
5364                       <rank>genus</rank>\r
5365                     </taxonomy>\r
5366                     <clade>\r
5367                       <name>a_76</name>\r
5368                       <clade>\r
5369                         <taxonomy>\r
5370                           <id provider="uniprot">2285</id>\r
5371                           <code>SULAC</code>\r
5372                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
5373                           <rank>species</rank>\r
5374                         </taxonomy>\r
5375                       </clade>\r
5376                       <clade>\r
5377                         <taxonomy>\r
5378                           <id provider="uniprot">273063</id>\r
5379                           <code>SULTO</code>\r
5380                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
5381                         </taxonomy>\r
5382                       </clade>\r
5383                     </clade>\r
5384                     <clade>\r
5385                       <taxonomy>\r
5386                         <id provider="uniprot">2287</id>\r
5387                         <code>SULSO</code>\r
5388                         <scientific_name>Sulfolobus solfataricus</scientific_name>\r
5389                         <rank>species</rank>\r
5390                       </taxonomy>\r
5391                     </clade>\r
5392                   </clade>\r
5393                   <clade>\r
5394                     <taxonomy>\r
5395                       <id provider="uniprot">399549</id>\r
5396                       <code>METS5</code>\r
5397                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
5398                     </taxonomy>\r
5399                   </clade>\r
5400                 </clade>\r
5401               </clade>\r
5402               <clade>\r
5403                 <taxonomy>\r
5404                   <id provider="uniprot">56636</id>\r
5405                   <code>AERPE</code>\r
5406                   <scientific_name>Aeropyrum pernix</scientific_name>\r
5407                   <rank>species</rank>\r
5408                 </taxonomy>\r
5409               </clade>\r
5410             </clade>\r
5411             <clade>\r
5412               <name>a_90</name>\r
5413               <clade>\r
5414                 <name>a_88</name>\r
5415                 <clade>\r
5416                   <name>a_86</name>\r
5417                   <clade>\r
5418                     <taxonomy>\r
5419                       <id provider="uniprot">399550</id>\r
5420                       <code>STAMF</code>\r
5421                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
5422                     </taxonomy>\r
5423                   </clade>\r
5424                   <clade>\r
5425                     <taxonomy>\r
5426                       <id provider="uniprot">368408</id>\r
5427                       <code>THEPD</code>\r
5428                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
5429                     </taxonomy>\r
5430                   </clade>\r
5431                 </clade>\r
5432                 <clade>\r
5433                   <taxonomy>\r
5434                     <id provider="uniprot">415426</id>\r
5435                     <code>HYPBU</code>\r
5436                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
5437                   </taxonomy>\r
5438                 </clade>\r
5439               </clade>\r
5440               <clade>\r
5441                 <taxonomy>\r
5442                   <id provider="uniprot">453591</id>\r
5443                   <code>IGNH4</code>\r
5444                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
5445                 </taxonomy>\r
5446               </clade>\r
5447             </clade>\r
5448           </clade>\r
5449           <clade>\r
5450             <taxonomy>\r
5451               <id provider="uniprot">374847</id>\r
5452               <code>KORCO</code>\r
5453               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
5454             </taxonomy>\r
5455           </clade>\r
5456         </clade>\r
5457       </clade>\r
5458     </clade>\r
5459     <clade>\r
5460       <taxonomy>\r
5461         <id provider="uniprot">2</id>\r
5462         <scientific_name>Bacteria</scientific_name>\r
5463         <rank>superkingdom</rank>\r
5464       </taxonomy>\r
5465       <clade>\r
5466         <name>b_278</name>\r
5467         <clade>\r
5468           <name>b_268</name>\r
5469           <clade>\r
5470             <name>b_226</name>\r
5471             <clade>\r
5472               <name>b_200</name>\r
5473               <clade>\r
5474                 <name>b_194</name>\r
5475                 <clade>\r
5476                   <name>b_104</name>\r
5477                   <clade>\r
5478                     <name>b_80</name>\r
5479                     <clade>\r
5480                       <taxonomy>\r
5481                         <id provider="uniprot">1224</id>\r
5482                         <scientific_name>Proteobacteria</scientific_name>\r
5483                         <rank>phylum</rank>\r
5484                       </taxonomy>\r
5485                       <clade>\r
5486                         <name>b_52</name>\r
5487                         <clade>\r
5488                           <name>b_44</name>\r
5489                           <clade>\r
5490                             <name>b_30</name>\r
5491                             <clade>\r
5492                               <name>b_24</name>\r
5493                               <taxonomy>\r
5494                                 <id provider="uniprot">1236</id>\r
5495                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
5496                                 <rank>class</rank>\r
5497                               </taxonomy>\r
5498                               <clade>\r
5499                                 <name>b_16</name>\r
5500                                 <clade>\r
5501                                   <name>b_10</name>\r
5502                                   <taxonomy>\r
5503                                     <id provider="uniprot">543</id>\r
5504                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
5505                                     <rank>family</rank>\r
5506                                   </taxonomy>\r
5507                                   <clade>\r
5508                                     <name>b_8</name>\r
5509                                     <clade>\r
5510                                       <name>b_6</name>\r
5511                                       <clade>\r
5512                                         <name>b_4</name>\r
5513                                         <clade>\r
5514                                           <name>b_2</name>\r
5515                                           <taxonomy>\r
5516                                             <id provider="uniprot">561</id>\r
5517                                             <scientific_name>Escherichia</scientific_name>\r
5518                                             <rank>genus</rank>\r
5519                                           </taxonomy>\r
5520                                           <clade>\r
5521                                             <taxonomy>\r
5522                                               <id provider="uniprot">83333</id>\r
5523                                               <code>ECOLI</code>\r
5524                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
5525                                             </taxonomy>\r
5526                                           </clade>\r
5527                                           <clade>\r
5528                                             <taxonomy>\r
5529                                               <id provider="uniprot">83334</id>\r
5530                                               <code>ECO57</code>\r
5531                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
5532                                             </taxonomy>\r
5533                                           </clade>\r
5534                                         </clade>\r
5535                                         <clade>\r
5536                                           <taxonomy>\r
5537                                             <id provider="uniprot">623</id>\r
5538                                             <code>SHIFL</code>\r
5539                                             <scientific_name>Shigella flexneri</scientific_name>\r
5540                                             <rank>species</rank>\r
5541                                           </taxonomy>\r
5542                                         </clade>\r
5543                                       </clade>\r
5544                                       <clade>\r
5545                                         <taxonomy>\r
5546                                           <id provider="uniprot">90371</id>\r
5547                                           <code>SALTY</code>\r
5548                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
5549                                         </taxonomy>\r
5550                                       </clade>\r
5551                                     </clade>\r
5552                                     <clade>\r
5553                                       <taxonomy>\r
5554                                         <id provider="uniprot">632</id>\r
5555                                         <code>YERPE</code>\r
5556                                         <scientific_name>Yersinia pestis</scientific_name>\r
5557                                         <rank>species</rank>\r
5558                                       </taxonomy>\r
5559                                     </clade>\r
5560                                   </clade>\r
5561                                   <clade>\r
5562                                     <taxonomy>\r
5563                                       <id provider="uniprot">29488</id>\r
5564                                       <code>PHOLU</code>\r
5565                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
5566                                       <synonym>Xenorhabdus luminescens</synonym>\r
5567                                       <rank>species</rank>\r
5568                                     </taxonomy>\r
5569                                   </clade>\r
5570                                 </clade>\r
5571                                 <clade>\r
5572                                   <name>b_15</name>\r
5573                                   <clade>\r
5574                                     <name>b_13</name>\r
5575                                     <taxonomy>\r
5576                                       <id provider="uniprot">641</id>\r
5577                                       <scientific_name>Vibrionaceae</scientific_name>\r
5578                                       <rank>family</rank>\r
5579                                     </taxonomy>\r
5580                                     <clade>\r
5581                                       <taxonomy>\r
5582                                         <id provider="uniprot">74109</id>\r
5583                                         <code>PHOPR</code>\r
5584                                         <scientific_name>Photobacterium profundum</scientific_name>\r
5585                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
5586                                         <rank>species</rank>\r
5587                                       </taxonomy>\r
5588                                     </clade>\r
5589                                     <clade>\r
5590                                       <taxonomy>\r
5591                                         <id provider="uniprot">666</id>\r
5592                                         <code>VIBCH</code>\r
5593                                         <scientific_name>Vibrio cholerae</scientific_name>\r
5594                                         <rank>species</rank>\r
5595                                       </taxonomy>\r
5596                                     </clade>\r
5597                                   </clade>\r
5598                                   <clade>\r
5599                                     <taxonomy>\r
5600                                       <id provider="uniprot">318161</id>\r
5601                                       <code>SHEDO</code>\r
5602                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
5603                                     </taxonomy>\r
5604                                   </clade>\r
5605                                 </clade>\r
5606                               </clade>\r
5607                               <clade>\r
5608                                 <name>b_23</name>\r
5609                                 <clade>\r
5610                                   <name>b_21</name>\r
5611                                   <taxonomy>\r
5612                                     <id provider="uniprot">286</id>\r
5613                                     <scientific_name>Pseudomonas</scientific_name>\r
5614                                     <rank>genus</rank>\r
5615                                   </taxonomy>\r
5616                                   <clade>\r
5617                                     <name>b_19</name>\r
5618                                     <clade>\r
5619                                       <taxonomy>\r
5620                                         <id provider="uniprot">220664</id>\r
5621                                         <code>PSEF5</code>\r
5622                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
5623                                       </taxonomy>\r
5624                                     </clade>\r
5625                                     <clade>\r
5626                                       <taxonomy>\r
5627                                         <id provider="uniprot">205922</id>\r
5628                                         <code>PSEPF</code>\r
5629                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
5630                                       </taxonomy>\r
5631                                     </clade>\r
5632                                   </clade>\r
5633                                   <clade>\r
5634                                     <taxonomy>\r
5635                                       <id provider="uniprot">287</id>\r
5636                                       <code>PSEAE</code>\r
5637                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
5638                                       <rank>species</rank>\r
5639                                     </taxonomy>\r
5640                                   </clade>\r
5641                                 </clade>\r
5642                                 <clade>\r
5643                                   <taxonomy>\r
5644                                     <id provider="uniprot">290398</id>\r
5645                                     <code>CHRSD</code>\r
5646                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
5647                                   </taxonomy>\r
5648                                 </clade>\r
5649                               </clade>\r
5650                             </clade>\r
5651                             <clade>\r
5652                               <name>b_29</name>\r
5653                               <taxonomy>\r
5654                                 <id provider="uniprot">28216</id>\r
5655                                 <scientific_name>Betaproteobacteria</scientific_name>\r
5656                                 <rank>class</rank>\r
5657                               </taxonomy>\r
5658                               <clade>\r
5659                                 <taxonomy>\r
5660                                   <id provider="uniprot">159087</id>\r
5661                                   <code>DECAR</code>\r
5662                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
5663                                 </taxonomy>\r
5664                               </clade>\r
5665                               <clade>\r
5666                                 <taxonomy>\r
5667                                   <id provider="uniprot">266264</id>\r
5668                                   <code>RALME</code>\r
5669                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
5670                                 </taxonomy>\r
5671                               </clade>\r
5672                             </clade>\r
5673                           </clade>\r
5674                           <clade>\r
5675                             <name>b_43</name>\r
5676                             <clade>\r
5677                               <name>b_41</name>\r
5678                               <clade>\r
5679                                 <name>b_35</name>\r
5680                                 <taxonomy>\r
5681                                   <id provider="uniprot">28216</id>\r
5682                                   <scientific_name>Betaproteobacteria</scientific_name>\r
5683                                   <rank>class</rank>\r
5684                                 </taxonomy>\r
5685                                 <clade>\r
5686                                   <name>b_33</name>\r
5687                                   <taxonomy>\r
5688                                     <id provider="uniprot">206379</id>\r
5689                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
5690                                     <rank>family</rank>\r
5691                                   </taxonomy>\r
5692                                   <clade>\r
5693                                     <taxonomy>\r
5694                                       <id provider="uniprot">915</id>\r
5695                                       <code>NITEU</code>\r
5696                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
5697                                       <rank>species</rank>\r
5698                                     </taxonomy>\r
5699                                   </clade>\r
5700                                   <clade>\r
5701                                     <taxonomy>\r
5702                                       <id provider="uniprot">323848</id>\r
5703                                       <code>NITMU</code>\r
5704                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
5705                                     </taxonomy>\r
5706                                   </clade>\r
5707                                 </clade>\r
5708                                 <clade>\r
5709                                   <taxonomy>\r
5710                                     <id provider="uniprot">36861</id>\r
5711                                     <code>THIDE</code>\r
5712                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
5713                                     <rank>species</rank>\r
5714                                   </taxonomy>\r
5715                                 </clade>\r
5716                               </clade>\r
5717                               <clade>\r
5718                                 <name>b_40</name>\r
5719                                 <taxonomy>\r
5720                                   <id provider="uniprot">135613</id>\r
5721                                   <scientific_name>Chromatiales</scientific_name>\r
5722                                   <rank>order</rank>\r
5723                                 </taxonomy>\r
5724                                 <clade>\r
5725                                   <name>b_38</name>\r
5726                                   <taxonomy>\r
5727                                     <id provider="uniprot">72276</id>\r
5728                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
5729                                     <common_name>purple sulfur bacteria</common_name>\r
5730                                     <rank>family</rank>\r
5731                                   </taxonomy>\r
5732                                   <clade>\r
5733                                     <taxonomy>\r
5734                                       <id provider="uniprot">187272</id>\r
5735                                       <code>ALHEH</code>\r
5736                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
5737                                     </taxonomy>\r
5738                                   </clade>\r
5739                                   <clade>\r
5740                                     <taxonomy>\r
5741                                       <id provider="uniprot">349124</id>\r
5742                                       <code>HALHL</code>\r
5743                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
5744                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
5745                                     </taxonomy>\r
5746                                   </clade>\r
5747                                 </clade>\r
5748                                 <clade>\r
5749                                   <taxonomy>\r
5750                                     <id provider="uniprot">323261</id>\r
5751                                     <code>NITOC</code>\r
5752                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
5753                                   </taxonomy>\r
5754                                 </clade>\r
5755                               </clade>\r
5756                             </clade>\r
5757                             <clade>\r
5758                               <taxonomy>\r
5759                                 <id provider="uniprot">317025</id>\r
5760                                 <code>THICR</code>\r
5761                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
5762                               </taxonomy>\r
5763                             </clade>\r
5764                           </clade>\r
5765                         </clade>\r
5766                         <clade>\r
5767                           <name>b_51</name>\r
5768                           <taxonomy>\r
5769                             <id provider="uniprot">1236</id>\r
5770                             <scientific_name>Gammaproteobacteria</scientific_name>\r
5771                             <rank>class</rank>\r
5772                           </taxonomy>\r
5773                           <clade>\r
5774                             <name>b_47</name>\r
5775                             <clade>\r
5776                               <taxonomy>\r
5777                                 <id provider="uniprot">135577</id>\r
5778                                 <code>IDILO</code>\r
5779                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
5780                                 <rank>species</rank>\r
5781                               </taxonomy>\r
5782                             </clade>\r
5783                             <clade>\r
5784                               <taxonomy>\r
5785                                 <id provider="uniprot">446</id>\r
5786                                 <code>LEGPN</code>\r
5787                                 <scientific_name>Legionella pneumophila</scientific_name>\r
5788                                 <rank>species</rank>\r
5789                               </taxonomy>\r
5790                             </clade>\r
5791                           </clade>\r
5792                           <clade>\r
5793                             <name>b_50</name>\r
5794                             <taxonomy>\r
5795                               <id provider="uniprot">32033</id>\r
5796                               <scientific_name>Xanthomonadaceae</scientific_name>\r
5797                               <rank>family</rank>\r
5798                             </taxonomy>\r
5799                             <clade>\r
5800                               <taxonomy>\r
5801                                 <id provider="uniprot">92829</id>\r
5802                                 <code>XANAC</code>\r
5803                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>\r
5804                                 <common_name>Citrus canker</common_name>\r
5805                               </taxonomy>\r
5806                             </clade>\r
5807                             <clade>\r
5808                               <taxonomy>\r
5809                                 <id provider="uniprot">183190</id>\r
5810                                 <code>XYLFT</code>\r
5811                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
5812                               </taxonomy>\r
5813                             </clade>\r
5814                           </clade>\r
5815                         </clade>\r
5816                       </clade>\r
5817                       <clade>\r
5818                         <name>b_71</name>\r
5819                         <taxonomy>\r
5820                           <id provider="uniprot">28211</id>\r
5821                           <scientific_name>Alphaproteobacteria</scientific_name>\r
5822                           <rank>class</rank>\r
5823                         </taxonomy>\r
5824                         <clade>\r
5825                           <name>b_67</name>\r
5826                           <clade>\r
5827                             <name>b_65</name>\r
5828                             <clade>\r
5829                               <name>b_61</name>\r
5830                               <taxonomy>\r
5831                                 <id provider="uniprot">356</id>\r
5832                                 <scientific_name>Rhizobiales</scientific_name>\r
5833                                 <rank>order</rank>\r
5834                               </taxonomy>\r
5835                               <clade>\r
5836                                 <name>b_57</name>\r
5837                                 <taxonomy>\r
5838                                   <id provider="uniprot">227290</id>\r
5839                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
5840                                 </taxonomy>\r
5841                                 <clade>\r
5842                                   <taxonomy>\r
5843                                     <id provider="uniprot">176299</id>\r
5844                                     <code>AGRT5</code>\r
5845                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
5846                                   </taxonomy>\r
5847                                 </clade>\r
5848                                 <clade>\r
5849                                   <taxonomy>\r
5850                                     <id provider="uniprot">347834</id>\r
5851                                     <code>RHIEC</code>\r
5852                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
5853                                   </taxonomy>\r
5854                                 </clade>\r
5855                               </clade>\r
5856                               <clade>\r
5857                                 <name>b_60</name>\r
5858                                 <taxonomy>\r
5859                                   <id provider="uniprot">41294</id>\r
5860                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
5861                                   <rank>family</rank>\r
5862                                 </taxonomy>\r
5863                                 <clade>\r
5864                                   <taxonomy>\r
5865                                     <id provider="uniprot">375</id>\r
5866                                     <code>BRAJA</code>\r
5867                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
5868                                     <rank>species</rank>\r
5869                                   </taxonomy>\r
5870                                 </clade>\r
5871                                 <clade>\r
5872                                   <taxonomy>\r
5873                                     <id provider="uniprot">395960</id>\r
5874                                     <code>RHOPT</code>\r
5875                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
5876                                   </taxonomy>\r
5877                                 </clade>\r
5878                               </clade>\r
5879                             </clade>\r
5880                             <clade>\r
5881                               <name>b_64</name>\r
5882                               <taxonomy>\r
5883                                 <id provider="uniprot">31989</id>\r
5884                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
5885                                 <rank>family</rank>\r
5886                               </taxonomy>\r
5887                               <clade>\r
5888                                 <taxonomy>\r
5889                                   <id provider="uniprot">349101</id>\r
5890                                   <code>RHOS1</code>\r
5891                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
5892                                 </taxonomy>\r
5893                               </clade>\r
5894                               <clade>\r
5895                                 <taxonomy>\r
5896                                   <id provider="uniprot">375451</id>\r
5897                                   <code>ROSDO</code>\r
5898                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
5899                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
5900                                   <synonym>Roseobacter denitrificans</synonym>\r
5901                                 </taxonomy>\r
5902                               </clade>\r
5903                             </clade>\r
5904                           </clade>\r
5905                           <clade>\r
5906                             <taxonomy>\r
5907                               <id provider="uniprot">155892</id>\r
5908                               <code>CAUCR</code>\r
5909                               <scientific_name>Caulobacter crescentus</scientific_name>\r
5910                               <synonym>Caulobacter vibrioides</synonym>\r
5911                               <rank>species</rank>\r
5912                             </taxonomy>\r
5913                           </clade>\r
5914                         </clade>\r
5915                         <clade>\r
5916                           <name>b_70</name>\r
5917                           <taxonomy>\r
5918                             <id provider="uniprot">204441</id>\r
5919                             <scientific_name>Rhodospirillales</scientific_name>\r
5920                             <rank>order</rank>\r
5921                           </taxonomy>\r
5922                           <clade>\r
5923                             <taxonomy>\r
5924                               <id provider="uniprot">524</id>\r
5925                               <code>ACICY</code>\r
5926                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
5927                               <rank>species</rank>\r
5928                             </taxonomy>\r
5929                           </clade>\r
5930                           <clade>\r
5931                             <taxonomy>\r
5932                               <id provider="uniprot">1085</id>\r
5933                               <code>RHORU</code>\r
5934                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
5935                               <rank>species</rank>\r
5936                             </taxonomy>\r
5937                           </clade>\r
5938                         </clade>\r
5939                       </clade>\r
5940                     </clade>\r
5941                     <clade>\r
5942                       <name>b_79</name>\r
5943                       <clade>\r
5944                         <name>b_77</name>\r
5945                         <taxonomy>\r
5946                           <id provider="uniprot">1224</id>\r
5947                           <scientific_name>Proteobacteria</scientific_name>\r
5948                           <rank>phylum</rank>\r
5949                         </taxonomy>\r
5950                         <clade>\r
5951                           <name>b_75</name>\r
5952                           <taxonomy>\r
5953                             <id provider="uniprot">712</id>\r
5954                             <scientific_name>Pasteurellaceae</scientific_name>\r
5955                             <rank>family</rank>\r
5956                           </taxonomy>\r
5957                           <clade>\r
5958                             <taxonomy>\r
5959                               <id provider="uniprot">727</id>\r
5960                               <code>HAEIN</code>\r
5961                               <scientific_name>Haemophilus influenzae</scientific_name>\r
5962                               <rank>species</rank>\r
5963                             </taxonomy>\r
5964                           </clade>\r
5965                           <clade>\r
5966                             <taxonomy>\r
5967                               <id provider="uniprot">747</id>\r
5968                               <code>PASMU</code>\r
5969                               <scientific_name>Pasteurella multocida</scientific_name>\r
5970                               <rank>species</rank>\r
5971                             </taxonomy>\r
5972                           </clade>\r
5973                         </clade>\r
5974                         <clade>\r
5975                           <taxonomy>\r
5976                             <id provider="uniprot">487</id>\r
5977                             <code>NEIME</code>\r
5978                             <scientific_name>Neisseria meningitidis</scientific_name>\r
5979                             <rank>species</rank>\r
5980                           </taxonomy>\r
5981                         </clade>\r
5982                       </clade>\r
5983                       <clade>\r
5984                         <taxonomy>\r
5985                           <id provider="uniprot">905</id>\r
5986                           <code>ACIFE</code>\r
5987                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
5988                           <rank>species</rank>\r
5989                         </taxonomy>\r
5990                       </clade>\r
5991                     </clade>\r
5992                   </clade>\r
5993                   <clade>\r
5994                     <name>b_103</name>\r
5995                     <clade>\r
5996                       <name>b_91</name>\r
5997                       <taxonomy>\r
5998                         <id provider="uniprot">28221</id>\r
5999                         <scientific_name>Deltaproteobacteria</scientific_name>\r
6000                         <rank>class</rank>\r
6001                       </taxonomy>\r
6002                       <clade>\r
6003                         <name>b_87</name>\r
6004                         <clade>\r
6005                           <name>b_83</name>\r
6006                           <clade>\r
6007                             <taxonomy>\r
6008                               <id provider="uniprot">84980</id>\r
6009                               <code>DESPS</code>\r
6010                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
6011                               <rank>species</rank>\r
6012                             </taxonomy>\r
6013                           </clade>\r
6014                           <clade>\r
6015                             <taxonomy>\r
6016                               <id provider="uniprot">876</id>\r
6017                               <code>DESDE</code>\r
6018                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
6019                               <rank>species</rank>\r
6020                             </taxonomy>\r
6021                           </clade>\r
6022                         </clade>\r
6023                         <clade>\r
6024                           <taxonomy>\r
6025                             <id provider="uniprot">56780</id>\r
6026                             <code>SYNAS</code>\r
6027                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
6028                           </taxonomy>\r
6029                         </clade>\r
6030                       </clade>\r
6031                       <clade>\r
6032                         <name>b_90</name>\r
6033                         <taxonomy>\r
6034                           <id provider="uniprot">28231</id>\r
6035                           <scientific_name>Geobacter</scientific_name>\r
6036                           <rank>genus</rank>\r
6037                         </taxonomy>\r
6038                         <clade>\r
6039                           <taxonomy>\r
6040                             <id provider="uniprot">28232</id>\r
6041                             <code>GEOME</code>\r
6042                             <scientific_name>Geobacter metallireducens</scientific_name>\r
6043                             <rank>species</rank>\r
6044                           </taxonomy>\r
6045                         </clade>\r
6046                         <clade>\r
6047                           <taxonomy>\r
6048                             <id provider="uniprot">35554</id>\r
6049                             <code>GEOSL</code>\r
6050                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
6051                             <rank>species</rank>\r
6052                           </taxonomy>\r
6053                         </clade>\r
6054                       </clade>\r
6055                     </clade>\r
6056                     <clade>\r
6057                       <name>b_102</name>\r
6058                       <clade>\r
6059                         <name>b_98</name>\r
6060                         <clade>\r
6061                           <name>b_94</name>\r
6062                           <taxonomy>\r
6063                             <id provider="uniprot">31</id>\r
6064                             <scientific_name>Myxococcaceae</scientific_name>\r
6065                             <rank>family</rank>\r
6066                           </taxonomy>\r
6067                           <clade>\r
6068                             <taxonomy>\r
6069                               <id provider="uniprot">290397</id>\r
6070                               <code>ANADE</code>\r
6071                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
6072                             </taxonomy>\r
6073                           </clade>\r
6074                           <clade>\r
6075                             <taxonomy>\r
6076                               <id provider="uniprot">34</id>\r
6077                               <code>MYXXA</code>\r
6078                               <scientific_name>Myxococcus xanthus</scientific_name>\r
6079                               <rank>species</rank>\r
6080                             </taxonomy>\r
6081                           </clade>\r
6082                         </clade>\r
6083                         <clade>\r
6084                           <name>b_97</name>\r
6085                           <taxonomy>\r
6086                             <id provider="uniprot">57723</id>\r
6087                             <scientific_name>Acidobacteria</scientific_name>\r
6088                             <rank>phylum</rank>\r
6089                           </taxonomy>\r
6090                           <clade>\r
6091                             <taxonomy>\r
6092                               <id provider="uniprot">204669</id>\r
6093                               <code>ACIBL</code>\r
6094                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>\r
6095                             </taxonomy>\r
6096                           </clade>\r
6097                           <clade>\r
6098                             <taxonomy>\r
6099                               <id provider="uniprot">332163</id>\r
6100                               <code>SOLUS</code>\r
6101                               <scientific_name>Solibacter usitatus</scientific_name>\r
6102                               <rank>species</rank>\r
6103                             </taxonomy>\r
6104                           </clade>\r
6105                         </clade>\r
6106                       </clade>\r
6107                       <clade>\r
6108                         <taxonomy>\r
6109                           <id provider="uniprot">265606</id>\r
6110                           <code>RHOBA</code>\r
6111                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
6112                           <rank>species</rank>\r
6113                         </taxonomy>\r
6114                       </clade>\r
6115                     </clade>\r
6116                   </clade>\r
6117                 </clade>\r
6118                 <clade>\r
6119                   <name>b_193</name>\r
6120                   <clade>\r
6121                     <name>b_163</name>\r
6122                     <clade>\r
6123                       <name>b_133</name>\r
6124                       <clade>\r
6125                         <name>Chloroflexi &amp; Actinobacteria</name>\r
6126                         <clade>\r
6127                           <taxonomy>\r
6128                             <id provider="uniprot">201174</id>\r
6129                             <scientific_name>Actinobacteria</scientific_name>\r
6130                             <rank>phylum</rank>\r
6131                           </taxonomy>\r
6132                           <clade>\r
6133                             <taxonomy>\r
6134                               <id provider="uniprot">2037</id>\r
6135                               <scientific_name>Actinomycetales</scientific_name>\r
6136                               <rank>order</rank>\r
6137                             </taxonomy>\r
6138                             <clade>\r
6139                               <name>b_115</name>\r
6140                               <clade>\r
6141                                 <taxonomy>\r
6142                                   <id provider="uniprot">266940</id>\r
6143                                   <code>KINRD</code>\r
6144                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
6145                                 </taxonomy>\r
6146                               </clade>\r
6147                               <clade>\r
6148                                 <taxonomy>\r
6149                                   <id provider="uniprot">378753</id>\r
6150                                   <code>KOCRD</code>\r
6151                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>\r
6152                                 </taxonomy>\r
6153                               </clade>\r
6154                               <clade>\r
6155                                 <taxonomy>\r
6156                                   <id provider="uniprot">1032480</id>\r
6157                                   <code>MICPN</code>\r
6158                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
6159                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
6160                                   <rank>strain</rank>\r
6161                                 </taxonomy>\r
6162                               </clade>\r
6163                               <clade>\r
6164                                 <taxonomy>\r
6165                                   <id provider="uniprot">1902</id>\r
6166                                   <code>STRCO</code>\r
6167                                   <scientific_name>Streptomyces coelicolor</scientific_name>\r
6168                                   <rank>species</rank>\r
6169                                 </taxonomy>\r
6170                               </clade>\r
6171                               <clade>\r
6172                                 <taxonomy>\r
6173                                   <id provider="uniprot">269800</id>\r
6174                                   <code>THEFY</code>\r
6175                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>\r
6176                                 </taxonomy>\r
6177                               </clade>\r
6178                             </clade>\r
6179                             <clade>\r
6180                               <taxonomy>\r
6181                                 <id provider="uniprot">85007</id>\r
6182                                 <scientific_name>Corynebacterineae</scientific_name>\r
6183                                 <rank>suborder</rank>\r
6184                               </taxonomy>\r
6185                               <clade>\r
6186                                 <taxonomy>\r
6187                                   <id provider="uniprot">1763</id>\r
6188                                   <scientific_name>Mycobacterium</scientific_name>\r
6189                                   <rank>genus</rank>\r
6190                                 </taxonomy>\r
6191                                 <clade>\r
6192                                   <taxonomy>\r
6193                                     <id provider="uniprot">1769</id>\r
6194                                     <code>MYCLE</code>\r
6195                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
6196                                     <rank>species</rank>\r
6197                                   </taxonomy>\r
6198                                 </clade>\r
6199                                 <clade>\r
6200                                   <taxonomy>\r
6201                                     <id provider="uniprot">1773</id>\r
6202                                     <code>MYCTU</code>\r
6203                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
6204                                     <rank>species</rank>\r
6205                                   </taxonomy>\r
6206                                 </clade>\r
6207                               </clade>\r
6208                               <clade>\r
6209                                 <taxonomy>\r
6210                                   <id provider="uniprot">306537</id>\r
6211                                   <code>CORJK</code>\r
6212                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>\r
6213                                 </taxonomy>\r
6214                               </clade>\r
6215                               <clade>\r
6216                                 <taxonomy>\r
6217                                   <id provider="uniprot">632772</id>\r
6218                                   <code>RHOOB</code>\r
6219                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
6220                                   <rank>strain</rank>\r
6221                                 </taxonomy>\r
6222                               </clade>\r
6223                             </clade>\r
6224                           </clade>\r
6225                           <clade>\r
6226                             <taxonomy>\r
6227                               <id provider="uniprot">266117</id>\r
6228                               <code>RUBXD</code>\r
6229                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
6230                             </taxonomy>\r
6231                           </clade>\r
6232                         </clade>\r
6233                         <clade>\r
6234                           <taxonomy>\r
6235                             <id provider="uniprot">200795</id>\r
6236                             <scientific_name>Chloroflexi</scientific_name>\r
6237                             <common_name>GNS bacteria</common_name>\r
6238                             <synonym>Thermomicrobia</synonym>\r
6239                             <rank>phylum</rank>\r
6240                           </taxonomy>\r
6241                           <clade>\r
6242                             <taxonomy>\r
6243                               <id provider="uniprot">32061</id>\r
6244                               <scientific_name>Chloroflexi (class)</scientific_name>\r
6245                               <synonym>Chloroflecales</synonym>\r
6246                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
6247                               <rank>class</rank>\r
6248                             </taxonomy>\r
6249                             <clade>\r
6250                               <name>b_122</name>\r
6251                               <taxonomy>\r
6252                                 <id provider="uniprot">1106</id>\r
6253                                 <scientific_name>Chloroflexaceae</scientific_name>\r
6254                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
6255                                 <rank>family</rank>\r
6256                               </taxonomy>\r
6257                               <clade>\r
6258                                 <taxonomy>\r
6259                                   <id provider="uniprot">1108</id>\r
6260                                   <code>CHLAU</code>\r
6261                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
6262                                   <rank>species</rank>\r
6263                                 </taxonomy>\r
6264                               </clade>\r
6265                               <clade>\r
6266                                 <taxonomy>\r
6267                                   <id provider="uniprot">383372</id>\r
6268                                   <code>ROSCS</code>\r
6269                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
6270                                   <rank>species</rank>\r
6271                                 </taxonomy>\r
6272                               </clade>\r
6273                             </clade>\r
6274                             <clade>\r
6275                               <taxonomy>\r
6276                                 <id provider="uniprot">65</id>\r
6277                                 <code>HERAU</code>\r
6278                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
6279                                 <synonym>Herpetosiphon giganteus</synonym>\r
6280                                 <rank>species</rank>\r
6281                               </taxonomy>\r
6282                             </clade>\r
6283                           </clade>\r
6284                           <clade>\r
6285                             <taxonomy>\r
6286                               <id provider="uniprot">479434</id>\r
6287                               <code>SPHTD</code>\r
6288                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
6289                               <rank>strain</rank>\r
6290                             </taxonomy>\r
6291                           </clade>\r
6292                         </clade>\r
6293                       </clade>\r
6294                       <clade>\r
6295                         <name>b_132</name>\r
6296                         <taxonomy>\r
6297                           <id provider="uniprot">188787</id>\r
6298                           <scientific_name>Deinococci</scientific_name>\r
6299                           <rank>class</rank>\r
6300                         </taxonomy>\r
6301                         <clade>\r
6302                           <name>b_130</name>\r
6303                           <taxonomy>\r
6304                             <id provider="uniprot">1298</id>\r
6305                             <scientific_name>Deinococcus</scientific_name>\r
6306                             <rank>genus</rank>\r
6307                           </taxonomy>\r
6308                           <clade>\r
6309                             <taxonomy>\r
6310                               <id provider="uniprot">319795</id>\r
6311                               <code>DEIGD</code>\r
6312                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
6313                             </taxonomy>\r
6314                           </clade>\r
6315                           <clade>\r
6316                             <taxonomy>\r
6317                               <id provider="uniprot">1299</id>\r
6318                               <code>DEIRA</code>\r
6319                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
6320                               <rank>species</rank>\r
6321                             </taxonomy>\r
6322                           </clade>\r
6323                         </clade>\r
6324                         <clade>\r
6325                           <taxonomy>\r
6326                             <id provider="uniprot">274</id>\r
6327                             <code>THETH</code>\r
6328                             <scientific_name>Thermus thermophilus</scientific_name>\r
6329                             <rank>species</rank>\r
6330                           </taxonomy>\r
6331                         </clade>\r
6332                       </clade>\r
6333                     </clade>\r
6334                     <clade>\r
6335                       <name>b_162</name>\r
6336                       <taxonomy>\r
6337                         <id provider="uniprot">1117</id>\r
6338                         <scientific_name>Cyanobacteria</scientific_name>\r
6339                         <rank>phylum</rank>\r
6340                       </taxonomy>\r
6341                       <clade>\r
6342                         <name>b_154</name>\r
6343                         <clade>\r
6344                           <name>b_152</name>\r
6345                           <clade>\r
6346                             <name>b_146</name>\r
6347                             <clade>\r
6348                               <name>b_144</name>\r
6349                               <clade>\r
6350                                 <name>b_142</name>\r
6351                                 <clade>\r
6352                                   <name>b_138</name>\r
6353                                   <taxonomy>\r
6354                                     <id provider="uniprot">1162</id>\r
6355                                     <scientific_name>Nostocaceae</scientific_name>\r
6356                                     <rank>family</rank>\r
6357                                   </taxonomy>\r
6358                                   <clade>\r
6359                                     <name>b_136</name>\r
6360                                     <clade>\r
6361                                       <taxonomy>\r
6362                                         <id provider="uniprot">1172</id>\r
6363                                         <code>ANAVA</code>\r
6364                                         <scientific_name>Anabaena variabilis</scientific_name>\r
6365                                         <rank>species</rank>\r
6366                                       </taxonomy>\r
6367                                     </clade>\r
6368                                     <clade>\r
6369                                       <taxonomy>\r
6370                                         <id provider="uniprot">28072</id>\r
6371                                         <code>NOSS7</code>\r
6372                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>\r
6373                                         <rank>species</rank>\r
6374                                       </taxonomy>\r
6375                                     </clade>\r
6376                                   </clade>\r
6377                                   <clade>\r
6378                                     <taxonomy>\r
6379                                       <id provider="uniprot">63737</id>\r
6380                                       <code>NOSP7</code>\r
6381                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
6382                                     </taxonomy>\r
6383                                   </clade>\r
6384                                 </clade>\r
6385                                 <clade>\r
6386                                   <taxonomy>\r
6387                                     <id provider="uniprot">155978</id>\r
6388                                     <code>ACAMR</code>\r
6389                                     <scientific_name>Acaryochloris marina</scientific_name>\r
6390                                     <rank>species</rank>\r
6391                                   </taxonomy>\r
6392                                 </clade>\r
6393                               </clade>\r
6394                               <clade>\r
6395                                 <taxonomy>\r
6396                                   <id provider="uniprot">449447</id>\r
6397                                   <code>MICAN</code>\r
6398                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
6399                                 </taxonomy>\r
6400                               </clade>\r
6401                             </clade>\r
6402                             <clade>\r
6403                               <taxonomy>\r
6404                                 <id provider="uniprot">1206</id>\r
6405                                 <code>TRIER</code>\r
6406                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
6407                                 <rank>species</rank>\r
6408                               </taxonomy>\r
6409                             </clade>\r
6410                           </clade>\r
6411                           <clade>\r
6412                             <name>b_149</name>\r
6413                             <taxonomy>\r
6414                               <id provider="uniprot">1118</id>\r
6415                               <scientific_name>Chroococcales</scientific_name>\r
6416                               <rank>order</rank>\r
6417                             </taxonomy>\r
6418                             <clade>\r
6419                               <taxonomy>\r
6420                                 <id provider="uniprot">32046</id>\r
6421                                 <code>SYNEL</code>\r
6422                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
6423                                 <rank>species</rank>\r
6424                               </taxonomy>\r
6425                             </clade>\r
6426                             <clade>\r
6427                               <taxonomy>\r
6428                                 <id provider="uniprot">1148</id>\r
6429                                 <code>SYNY3</code>\r
6430                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>\r
6431                                 <rank>species</rank>\r
6432                               </taxonomy>\r
6433                             </clade>\r
6434                           </clade>\r
6435                         </clade>\r
6436                         <clade>\r
6437                           <taxonomy>\r
6438                             <id provider="uniprot">33072</id>\r
6439                             <code>GLOVI</code>\r
6440                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
6441                             <rank>species</rank>\r
6442                           </taxonomy>\r
6443                         </clade>\r
6444                       </clade>\r
6445                       <clade>\r
6446                         <name>b_161</name>\r
6447                         <clade>\r
6448                           <name>b_159</name>\r
6449                           <taxonomy>\r
6450                             <id provider="uniprot">1218</id>\r
6451                             <scientific_name>Prochlorococcus</scientific_name>\r
6452                             <rank>genus</rank>\r
6453                           </taxonomy>\r
6454                           <clade>\r
6455                             <name>b_157</name>\r
6456                             <clade>\r
6457                               <taxonomy>\r
6458                                 <id provider="uniprot">1219</id>\r
6459                                 <code>PROMA</code>\r
6460                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
6461                                 <rank>species</rank>\r
6462                               </taxonomy>\r
6463                             </clade>\r
6464                             <clade>\r
6465                               <taxonomy>\r
6466                                 <id provider="uniprot">59919</id>\r
6467                                 <code>PROMP</code>\r
6468                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
6469                               </taxonomy>\r
6470                             </clade>\r
6471                           </clade>\r
6472                           <clade>\r
6473                             <taxonomy>\r
6474                               <id provider="uniprot">74547</id>\r
6475                               <code>PROMM</code>\r
6476                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
6477                             </taxonomy>\r
6478                           </clade>\r
6479                         </clade>\r
6480                         <clade>\r
6481                           <taxonomy>\r
6482                             <id provider="uniprot">64471</id>\r
6483                             <code>SYNS3</code>\r
6484                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
6485                             <rank>species</rank>\r
6486                           </taxonomy>\r
6487                         </clade>\r
6488                       </clade>\r
6489                     </clade>\r
6490                   </clade>\r
6491                   <clade>\r
6492                     <name>b_192</name>\r
6493                     <clade>\r
6494                       <name>b_190</name>\r
6495                       <clade>\r
6496                         <name>b_178</name>\r
6497                         <clade>\r
6498                           <name>b_176</name>\r
6499                           <taxonomy>\r
6500                             <id provider="uniprot">191412</id>\r
6501                             <scientific_name>Chlorobiaceae</scientific_name>\r
6502                             <rank>family</rank>\r
6503                           </taxonomy>\r
6504                           <clade>\r
6505                             <name>b_170</name>\r
6506                             <clade>\r
6507                               <name>b_166</name>\r
6508                               <clade>\r
6509                                 <taxonomy>\r
6510                                   <id provider="uniprot">331678</id>\r
6511                                   <code>CHLPB</code>\r
6512                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
6513                                 </taxonomy>\r
6514                               </clade>\r
6515                               <clade>\r
6516                                 <taxonomy>\r
6517                                   <id provider="uniprot">1102</id>\r
6518                                   <code>PROAE</code>\r
6519                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
6520                                   <rank>species</rank>\r
6521                                 </taxonomy>\r
6522                               </clade>\r
6523                             </clade>\r
6524                             <clade>\r
6525                               <name>b_169</name>\r
6526                               <taxonomy>\r
6527                                 <id provider="uniprot">274493</id>\r
6528                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
6529                               </taxonomy>\r
6530                               <clade>\r
6531                                 <taxonomy>\r
6532                                   <id provider="uniprot">1100</id>\r
6533                                   <code>PELLU</code>\r
6534                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
6535                                   <rank>species</rank>\r
6536                                 </taxonomy>\r
6537                               </clade>\r
6538                               <clade>\r
6539                                 <taxonomy>\r
6540                                   <id provider="uniprot">290318</id>\r
6541                                   <code>PROVI</code>\r
6542                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
6543                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
6544                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
6545                                 </taxonomy>\r
6546                               </clade>\r
6547                             </clade>\r
6548                           </clade>\r
6549                           <clade>\r
6550                             <name>b_175</name>\r
6551                             <clade>\r
6552                               <name>b_173</name>\r
6553                               <taxonomy>\r
6554                                 <id provider="uniprot">256319</id>\r
6555                                 <scientific_name>Chlorobaculum</scientific_name>\r
6556                                 <rank>genus</rank>\r
6557                               </taxonomy>\r
6558                               <clade>\r
6559                                 <taxonomy>\r
6560                                   <id provider="uniprot">517417</id>\r
6561                                   <code>CHLP8</code>\r
6562                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
6563                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
6564                                 </taxonomy>\r
6565                               </clade>\r
6566                               <clade>\r
6567                                 <taxonomy>\r
6568                                   <id provider="uniprot">1097</id>\r
6569                                   <code>CHLTE</code>\r
6570                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
6571                                   <rank>species</rank>\r
6572                                 </taxonomy>\r
6573                               </clade>\r
6574                             </clade>\r
6575                             <clade>\r
6576                               <taxonomy>\r
6577                                 <id provider="uniprot">340177</id>\r
6578                                 <code>CHLCH</code>\r
6579                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
6580                               </taxonomy>\r
6581                             </clade>\r
6582                           </clade>\r
6583                         </clade>\r
6584                         <clade>\r
6585                           <taxonomy>\r
6586                             <id provider="uniprot">315277</id>\r
6587                             <code>CHLTA</code>\r
6588                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
6589                           </taxonomy>\r
6590                         </clade>\r
6591                       </clade>\r
6592                       <clade>\r
6593                         <name>b_189</name>\r
6594                         <taxonomy>\r
6595                           <id provider="uniprot">976</id>\r
6596                           <scientific_name>Bacteroidetes</scientific_name>\r
6597                           <rank>phylum</rank>\r
6598                         </taxonomy>\r
6599                         <clade>\r
6600                           <name>b_183</name>\r
6601                           <clade>\r
6602                             <name>b_181</name>\r
6603                             <taxonomy>\r
6604                               <id provider="uniprot">49546</id>\r
6605                               <scientific_name>Flavobacteriaceae</scientific_name>\r
6606                               <rank>family</rank>\r
6607                             </taxonomy>\r
6608                             <clade>\r
6609                               <taxonomy>\r
6610                                 <id provider="uniprot">986</id>\r
6611                                 <code>FLAJO</code>\r
6612                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
6613                                 <synonym>Cytophaga johnsonae</synonym>\r
6614                                 <rank>species</rank>\r
6615                               </taxonomy>\r
6616                             </clade>\r
6617                             <clade>\r
6618                               <taxonomy>\r
6619                                 <id provider="uniprot">411154</id>\r
6620                                 <code>GRAFK</code>\r
6621                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
6622                               </taxonomy>\r
6623                             </clade>\r
6624                           </clade>\r
6625                           <clade>\r
6626                             <taxonomy>\r
6627                               <id provider="uniprot">269798</id>\r
6628                               <code>CYTH3</code>\r
6629                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
6630                             </taxonomy>\r
6631                           </clade>\r
6632                         </clade>\r
6633                         <clade>\r
6634                           <name>b_188</name>\r
6635                           <taxonomy>\r
6636                             <id provider="uniprot">171549</id>\r
6637                             <scientific_name>Bacteroidales</scientific_name>\r
6638                             <rank>order</rank>\r
6639                           </taxonomy>\r
6640                           <clade>\r
6641                             <name>b_186</name>\r
6642                             <taxonomy>\r
6643                               <id provider="uniprot">816</id>\r
6644                               <scientific_name>Bacteroides</scientific_name>\r
6645                               <rank>genus</rank>\r
6646                             </taxonomy>\r
6647                             <clade>\r
6648                               <taxonomy>\r
6649                                 <id provider="uniprot">817</id>\r
6650                                 <code>BACFR</code>\r
6651                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
6652                                 <rank>species</rank>\r
6653                               </taxonomy>\r
6654                             </clade>\r
6655                             <clade>\r
6656                               <taxonomy>\r
6657                                 <id provider="uniprot">818</id>\r
6658                                 <code>BACTN</code>\r
6659                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
6660                                 <rank>species</rank>\r
6661                               </taxonomy>\r
6662                             </clade>\r
6663                           </clade>\r
6664                           <clade>\r
6665                             <taxonomy>\r
6666                               <id provider="uniprot">837</id>\r
6667                               <code>PORGI</code>\r
6668                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
6669                               <synonym>Bacteroides gingivalis</synonym>\r
6670                               <rank>species</rank>\r
6671                             </taxonomy>\r
6672                           </clade>\r
6673                         </clade>\r
6674                       </clade>\r
6675                     </clade>\r
6676                     <clade>\r
6677                       <taxonomy>\r
6678                         <id provider="uniprot">309807</id>\r
6679                         <code>SALRD</code>\r
6680                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
6681                       </taxonomy>\r
6682                     </clade>\r
6683                   </clade>\r
6684                 </clade>\r
6685               </clade>\r
6686               <clade>\r
6687                 <name>b_199</name>\r
6688                 <clade>\r
6689                   <name>b_197</name>\r
6690                   <taxonomy>\r
6691                     <scientific_name>Verrucomicrobia</scientific_name>\r
6692                   </taxonomy>\r
6693                   <clade>\r
6694                     <taxonomy>\r
6695                       <id provider="uniprot">349741</id>\r
6696                       <code>AKKM8</code>\r
6697                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
6698                     </taxonomy>\r
6699                   </clade>\r
6700                   <clade>\r
6701                     <taxonomy>\r
6702                       <id provider="uniprot">481448</id>\r
6703                       <code>METI4</code>\r
6704                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
6705                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
6706                     </taxonomy>\r
6707                   </clade>\r
6708                 </clade>\r
6709                 <clade>\r
6710                   <taxonomy>\r
6711                     <id provider="uniprot">44275</id>\r
6712                     <code>LEPIC</code>\r
6713                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
6714                   </taxonomy>\r
6715                 </clade>\r
6716               </clade>\r
6717             </clade>\r
6718             <clade>\r
6719               <name>b_225</name>\r
6720               <clade>\r
6721                 <name>b_219</name>\r
6722                 <taxonomy>\r
6723                   <id provider="uniprot">1239</id>\r
6724                   <scientific_name>Firmicutes</scientific_name>\r
6725                   <rank>phylum</rank>\r
6726                 </taxonomy>\r
6727                 <clade>\r
6728                   <name>b_213</name>\r
6729                   <clade>\r
6730                     <taxonomy>\r
6731                       <id provider="uniprot">1385</id>\r
6732                       <scientific_name>Bacillales</scientific_name>\r
6733                       <rank>order</rank>\r
6734                     </taxonomy>\r
6735                     <clade>\r
6736                       <taxonomy>\r
6737                         <id provider="uniprot">186817</id>\r
6738                         <scientific_name>Bacillaceae</scientific_name>\r
6739                         <rank>family</rank>\r
6740                       </taxonomy>\r
6741                       <clade>\r
6742                         <taxonomy>\r
6743                           <id provider="uniprot">1386</id>\r
6744                           <scientific_name>Bacillus</scientific_name>\r
6745                           <rank>genus</rank>\r
6746                         </taxonomy>\r
6747                         <clade>\r
6748                           <taxonomy>\r
6749                             <id provider="uniprot">86661</id>\r
6750                             <scientific_name>Bacillus cereus group</scientific_name>\r
6751                           </taxonomy>\r
6752                           <clade>\r
6753                             <taxonomy>\r
6754                               <id provider="uniprot">1392</id>\r
6755                               <code>BACAN</code>\r
6756                               <scientific_name>Bacillus anthracis</scientific_name>\r
6757                               <rank>species</rank>\r
6758                             </taxonomy>\r
6759                           </clade>\r
6760                           <clade>\r
6761                             <taxonomy>\r
6762                               <id provider="uniprot">572264</id>\r
6763                               <code>BACC3</code>\r
6764                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
6765                               <rank>strain</rank>\r
6766                             </taxonomy>\r
6767                           </clade>\r
6768                         </clade>\r
6769                         <clade>\r
6770                           <taxonomy>\r
6771                             <id provider="uniprot">1423</id>\r
6772                             <code>BACSU</code>\r
6773                             <scientific_name>Bacillus subtilis</scientific_name>\r
6774                             <rank>species</rank>\r
6775                           </taxonomy>\r
6776                         </clade>\r
6777                       </clade>\r
6778                       <clade>\r
6779                         <name>b_206</name>\r
6780                         <clade>\r
6781                           <taxonomy>\r
6782                             <id provider="uniprot">86665</id>\r
6783                             <code>BACHD</code>\r
6784                             <scientific_name>Bacillus halodurans</scientific_name>\r
6785                             <rank>species</rank>\r
6786                           </taxonomy>\r
6787                         </clade>\r
6788                         <clade>\r
6789                           <taxonomy>\r
6790                             <id provider="uniprot">1462</id>\r
6791                             <code>GEOKA</code>\r
6792                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
6793                             <rank>species</rank>\r
6794                           </taxonomy>\r
6795                         </clade>\r
6796                       </clade>\r
6797                     </clade>\r
6798                     <clade>\r
6799                       <name>b_210</name>\r
6800                       <clade>\r
6801                         <taxonomy>\r
6802                           <id provider="uniprot">1639</id>\r
6803                           <code>LISMO</code>\r
6804                           <scientific_name>Listeria monocytogenes</scientific_name>\r
6805                           <rank>species</rank>\r
6806                         </taxonomy>\r
6807                       </clade>\r
6808                       <clade>\r
6809                         <taxonomy>\r
6810                           <id provider="uniprot">1280</id>\r
6811                           <code>STAAU</code>\r
6812                           <scientific_name>Staphylococcus aureus</scientific_name>\r
6813                           <rank>species</rank>\r
6814                         </taxonomy>\r
6815                       </clade>\r
6816                     </clade>\r
6817                   </clade>\r
6818                   <clade>\r
6819                     <taxonomy>\r
6820                       <id provider="uniprot">195103</id>\r
6821                       <code>CLOP1</code>\r
6822                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
6823                     </taxonomy>\r
6824                   </clade>\r
6825                 </clade>\r
6826                 <clade>\r
6827                   <name>Clostridia</name>\r
6828                   <taxonomy>\r
6829                     <id provider="uniprot">186801</id>\r
6830                     <scientific_name>Clostridia</scientific_name>\r
6831                     <rank>class</rank>\r
6832                   </taxonomy>\r
6833                   <clade>\r
6834                     <name>b_218</name>\r
6835                     <clade>\r
6836                       <name>b_216</name>\r
6837                       <taxonomy>\r
6838                         <id provider="uniprot">186814</id>\r
6839                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
6840                         <rank>family</rank>\r
6841                       </taxonomy>\r
6842                       <clade>\r
6843                         <taxonomy>\r
6844                           <id provider="uniprot">246194</id>\r
6845                           <code>CARHZ</code>\r
6846                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
6847                         </taxonomy>\r
6848                       </clade>\r
6849                       <clade>\r
6850                         <taxonomy>\r
6851                           <id provider="uniprot">119072</id>\r
6852                           <code>THETN</code>\r
6853                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
6854                           <rank>species</rank>\r
6855                         </taxonomy>\r
6856                       </clade>\r
6857                     </clade>\r
6858                     <clade>\r
6859                       <taxonomy>\r
6860                         <id provider="uniprot">49338</id>\r
6861                         <code>DESHA</code>\r
6862                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
6863                         <synonym>Desulfitobacterium frappieri</synonym>\r
6864                         <rank>species</rank>\r
6865                       </taxonomy>\r
6866                     </clade>\r
6867                   </clade>\r
6868                   <clade>\r
6869                     <taxonomy>\r
6870                       <id provider="uniprot">515619</id>\r
6871                       <code>EUBR3</code>\r
6872                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
6873                     </taxonomy>\r
6874                   </clade>\r
6875                 </clade>\r
6876               </clade>\r
6877               <clade>\r
6878                 <name>b_224</name>\r
6879                 <taxonomy>\r
6880                   <id provider="uniprot">188709</id>\r
6881                   <scientific_name>Thermotogaceae</scientific_name>\r
6882                   <rank>family</rank>\r
6883                 </taxonomy>\r
6884                 <clade>\r
6885                   <name>b_222</name>\r
6886                   <clade>\r
6887                     <taxonomy>\r
6888                       <id provider="uniprot">381764</id>\r
6889                       <code>FERNB</code>\r
6890                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
6891                     </taxonomy>\r
6892                   </clade>\r
6893                   <clade>\r
6894                     <taxonomy>\r
6895                       <id provider="uniprot">416591</id>\r
6896                       <code>THELT</code>\r
6897                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
6898                     </taxonomy>\r
6899                   </clade>\r
6900                 </clade>\r
6901                 <clade>\r
6902                   <taxonomy>\r
6903                     <id provider="uniprot">2336</id>\r
6904                     <code>THEMA</code>\r
6905                     <scientific_name>Thermotoga maritima</scientific_name>\r
6906                     <rank>species</rank>\r
6907                   </taxonomy>\r
6908                 </clade>\r
6909               </clade>\r
6910             </clade>\r
6911           </clade>\r
6912           <clade>\r
6913             <name>b_267</name>\r
6914             <clade>\r
6915               <name>b_263</name>\r
6916               <clade>\r
6917                 <name>b_251</name>\r
6918                 <clade>\r
6919                   <name>b_249</name>\r
6920                   <clade>\r
6921                     <name>b_245</name>\r
6922                     <clade>\r
6923                       <name>b_237</name>\r
6924                       <clade>\r
6925                         <name>b_233</name>\r
6926                         <taxonomy>\r
6927                           <id provider="uniprot">31969</id>\r
6928                           <scientific_name>Mollicutes</scientific_name>\r
6929                           <rank>class</rank>\r
6930                         </taxonomy>\r
6931                         <clade>\r
6932                           <name>b_231</name>\r
6933                           <clade>\r
6934                             <name>b_229</name>\r
6935                             <taxonomy>\r
6936                               <scientific_name>Mycoplasma</scientific_name>\r
6937                             </taxonomy>\r
6938                             <clade>\r
6939                               <taxonomy>\r
6940                                 <id provider="uniprot">2097</id>\r
6941                                 <code>MYCGE</code>\r
6942                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
6943                                 <rank>species</rank>\r
6944                               </taxonomy>\r
6945                             </clade>\r
6946                             <clade>\r
6947                               <taxonomy>\r
6948                                 <id provider="uniprot">2104</id>\r
6949                                 <code>MYCPN</code>\r
6950                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
6951                                 <rank>species</rank>\r
6952                               </taxonomy>\r
6953                             </clade>\r
6954                           </clade>\r
6955                           <clade>\r
6956                             <taxonomy>\r
6957                               <id provider="uniprot">2151</id>\r
6958                               <code>MESFL</code>\r
6959                               <scientific_name>Mesoplasma florum</scientific_name>\r
6960                               <synonym>Acholeplasma florum</synonym>\r
6961                               <rank>species</rank>\r
6962                             </taxonomy>\r
6963                           </clade>\r
6964                         </clade>\r
6965                         <clade>\r
6966                           <taxonomy>\r
6967                             <id provider="uniprot">134821</id>\r
6968                             <code>UREPA</code>\r
6969                             <scientific_name>Ureaplasma parvum</scientific_name>\r
6970                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
6971                             <rank>species</rank>\r
6972                           </taxonomy>\r
6973                         </clade>\r
6974                       </clade>\r
6975                       <clade>\r
6976                         <name>b_236</name>\r
6977                         <taxonomy>\r
6978                           <id provider="uniprot">137</id>\r
6979                           <scientific_name>Spirochaetaceae</scientific_name>\r
6980                           <rank>family</rank>\r
6981                         </taxonomy>\r
6982                         <clade>\r
6983                           <taxonomy>\r
6984                             <id provider="uniprot">139</id>\r
6985                             <code>BORBU</code>\r
6986                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
6987                             <common_name>Lyme disease spirochete</common_name>\r
6988                             <rank>species</rank>\r
6989                           </taxonomy>\r
6990                         </clade>\r
6991                         <clade>\r
6992                           <taxonomy>\r
6993                             <id provider="uniprot">160</id>\r
6994                             <code>TREPA</code>\r
6995                             <scientific_name>Treponema pallidum</scientific_name>\r
6996                             <rank>species</rank>\r
6997                           </taxonomy>\r
6998                         </clade>\r
6999                       </clade>\r
7000                     </clade>\r
7001                     <clade>\r
7002                       <name>b_244</name>\r
7003                       <clade>\r
7004                         <name>b_242</name>\r
7005                         <taxonomy>\r
7006                           <id provider="uniprot">1113537</id>\r
7007                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
7008                         </taxonomy>\r
7009                         <clade>\r
7010                           <name>b_240</name>\r
7011                           <clade>\r
7012                             <taxonomy>\r
7013                               <id provider="uniprot">83558</id>\r
7014                               <code>CHLPN</code>\r
7015                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
7016                               <synonym>Chlamydophila pneumoniae</synonym>\r
7017                               <rank>species</rank>\r
7018                             </taxonomy>\r
7019                           </clade>\r
7020                           <clade>\r
7021                             <taxonomy>\r
7022                               <id provider="uniprot">264202</id>\r
7023                               <code>CHLFF</code>\r
7024                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
7025                             </taxonomy>\r
7026                           </clade>\r
7027                         </clade>\r
7028                         <clade>\r
7029                           <taxonomy>\r
7030                             <id provider="uniprot">83560</id>\r
7031                             <code>CHLMU</code>\r
7032                             <scientific_name>Chlamydia muridarum</scientific_name>\r
7033                             <rank>species</rank>\r
7034                           </taxonomy>\r
7035                         </clade>\r
7036                       </clade>\r
7037                       <clade>\r
7038                         <taxonomy>\r
7039                           <id provider="uniprot">785</id>\r
7040                           <code>RICTY</code>\r
7041                           <scientific_name>Rickettsia typhi</scientific_name>\r
7042                           <rank>species</rank>\r
7043                         </taxonomy>\r
7044                       </clade>\r
7045                     </clade>\r
7046                   </clade>\r
7047                   <clade>\r
7048                     <taxonomy>\r
7049                       <id provider="uniprot">28211</id>\r
7050                       <scientific_name>Alphaproteobacteria</scientific_name>\r
7051                       <rank>class</rank>\r
7052                     </taxonomy>\r
7053                     <clade>\r
7054                       <taxonomy>\r
7055                         <id provider="uniprot">38323</id>\r
7056                         <code>BARHE</code>\r
7057                         <scientific_name>Bartonella henselae</scientific_name>\r
7058                         <synonym>Rochalimaea henselae</synonym>\r
7059                         <rank>species</rank>\r
7060                       </taxonomy>\r
7061                     </clade>\r
7062                     <clade>\r
7063                       <taxonomy>\r
7064                         <id provider="uniprot">198252</id>\r
7065                         <code>PELUB</code>\r
7066                         <scientific_name>Pelagibacter ubique</scientific_name>\r
7067                         <rank>species</rank>\r
7068                       </taxonomy>\r
7069                     </clade>\r
7070                     <clade>\r
7071                       <taxonomy>\r
7072                         <id provider="uniprot">780</id>\r
7073                         <scientific_name>Rickettsia</scientific_name>\r
7074                         <rank>genus</rank>\r
7075                       </taxonomy>\r
7076                       <clade>\r
7077                         <taxonomy>\r
7078                           <id provider="uniprot">391896</id>\r
7079                           <code>RICB8</code>\r
7080                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
7081                         </taxonomy>\r
7082                       </clade>\r
7083                       <clade>\r
7084                         <taxonomy>\r
7085                           <id provider="uniprot">452659</id>\r
7086                           <code>RICRO</code>\r
7087                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
7088                           <rank>strain</rank>\r
7089                         </taxonomy>\r
7090                       </clade>\r
7091                     </clade>\r
7092                   </clade>\r
7093                 </clade>\r
7094                 <clade>\r
7095                   <taxonomy>\r
7096                     <id provider="uniprot">263</id>\r
7097                     <code>FRATU</code>\r
7098                     <scientific_name>Francisella tularensis</scientific_name>\r
7099                     <rank>species</rank>\r
7100                   </taxonomy>\r
7101                 </clade>\r
7102               </clade>\r
7103               <clade>\r
7104                 <name>b_262</name>\r
7105                 <clade>\r
7106                   <name>b_260</name>\r
7107                   <clade>\r
7108                     <name>b_258</name>\r
7109                     <taxonomy>\r
7110                       <id provider="uniprot">186826</id>\r
7111                       <scientific_name>Lactobacillales</scientific_name>\r
7112                       <rank>order</rank>\r
7113                     </taxonomy>\r
7114                     <clade>\r
7115                       <name>b_256</name>\r
7116                       <taxonomy>\r
7117                         <id provider="uniprot">1300</id>\r
7118                         <scientific_name>Streptococcaceae</scientific_name>\r
7119                         <rank>family</rank>\r
7120                       </taxonomy>\r
7121                       <clade>\r
7122                         <name>b_254</name>\r
7123                         <taxonomy>\r
7124                           <id provider="uniprot">1301</id>\r
7125                           <scientific_name>Streptococcus</scientific_name>\r
7126                           <rank>genus</rank>\r
7127                         </taxonomy>\r
7128                         <clade>\r
7129                           <taxonomy>\r
7130                             <id provider="uniprot">1313</id>\r
7131                             <code>STRPN</code>\r
7132                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
7133                             <rank>species</rank>\r
7134                           </taxonomy>\r
7135                         </clade>\r
7136                         <clade>\r
7137                           <taxonomy>\r
7138                             <id provider="uniprot">1314</id>\r
7139                             <code>STRPY</code>\r
7140                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
7141                             <rank>species</rank>\r
7142                           </taxonomy>\r
7143                         </clade>\r
7144                       </clade>\r
7145                       <clade>\r
7146                         <taxonomy>\r
7147                           <id provider="uniprot">1360</id>\r
7148                           <code>LACLA</code>\r
7149                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
7150                           <synonym>Streptococcus lactis</synonym>\r
7151                           <rank>subspecies</rank>\r
7152                         </taxonomy>\r
7153                       </clade>\r
7154                     </clade>\r
7155                     <clade>\r
7156                       <taxonomy>\r
7157                         <id provider="uniprot">1579</id>\r
7158                         <code>LACAC</code>\r
7159                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
7160                         <rank>species</rank>\r
7161                       </taxonomy>\r
7162                     </clade>\r
7163                   </clade>\r
7164                   <clade>\r
7165                     <taxonomy>\r
7166                       <id provider="uniprot">216816</id>\r
7167                       <code>BIFLO</code>\r
7168                       <scientific_name>Bifidobacterium longum</scientific_name>\r
7169                       <rank>species</rank>\r
7170                     </taxonomy>\r
7171                   </clade>\r
7172                 </clade>\r
7173                 <clade>\r
7174                   <taxonomy>\r
7175                     <id provider="uniprot">851</id>\r
7176                     <code>FUSNU</code>\r
7177                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
7178                     <rank>species</rank>\r
7179                   </taxonomy>\r
7180                 </clade>\r
7181               </clade>\r
7182             </clade>\r
7183             <clade>\r
7184               <name>b_266</name>\r
7185               <taxonomy>\r
7186                 <id provider="uniprot">61434</id>\r
7187                 <scientific_name>Dehalococcoides</scientific_name>\r
7188                 <rank>genus</rank>\r
7189               </taxonomy>\r
7190               <clade>\r
7191                 <taxonomy>\r
7192                   <id provider="uniprot">243164</id>\r
7193                   <code>DEHE1</code>\r
7194                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
7195                 </taxonomy>\r
7196               </clade>\r
7197               <clade>\r
7198                 <taxonomy>\r
7199                   <id provider="uniprot">216389</id>\r
7200                   <code>DEHSB</code>\r
7201                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
7202                   <rank>species</rank>\r
7203                 </taxonomy>\r
7204               </clade>\r
7205             </clade>\r
7206           </clade>\r
7207         </clade>\r
7208         <clade>\r
7209           <name>b_277</name>\r
7210           <taxonomy>\r
7211             <id provider="uniprot">29547</id>\r
7212             <scientific_name>Epsilonproteobacteria</scientific_name>\r
7213             <rank>class</rank>\r
7214           </taxonomy>\r
7215           <clade>\r
7216             <name>b_273</name>\r
7217             <clade>\r
7218               <taxonomy>\r
7219                 <id provider="uniprot">387092</id>\r
7220                 <code>NITSB</code>\r
7221                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
7222                 <rank>species</rank>\r
7223               </taxonomy>\r
7224             </clade>\r
7225             <clade>\r
7226               <taxonomy>\r
7227                 <id provider="uniprot">387093</id>\r
7228                 <code>SULNB</code>\r
7229                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
7230                 <rank>species</rank>\r
7231               </taxonomy>\r
7232             </clade>\r
7233           </clade>\r
7234           <clade>\r
7235             <name>b_276</name>\r
7236             <taxonomy>\r
7237               <id provider="uniprot">213849</id>\r
7238               <scientific_name>Campylobacterales</scientific_name>\r
7239               <rank>order</rank>\r
7240             </taxonomy>\r
7241             <clade>\r
7242               <taxonomy>\r
7243                 <id provider="uniprot">197</id>\r
7244                 <code>CAMJE</code>\r
7245                 <scientific_name>Campylobacter jejuni</scientific_name>\r
7246                 <rank>species</rank>\r
7247               </taxonomy>\r
7248             </clade>\r
7249             <clade>\r
7250               <taxonomy>\r
7251                 <id provider="uniprot">357544</id>\r
7252                 <code>HELPH</code>\r
7253                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
7254               </taxonomy>\r
7255             </clade>\r
7256           </clade>\r
7257         </clade>\r
7258       </clade>\r
7259       <clade>\r
7260         <taxonomy>\r
7261           <id provider="uniprot">63363</id>\r
7262           <code>AQUAE</code>\r
7263           <scientific_name>Aquifex aeolicus</scientific_name>\r
7264           <rank>species</rank>\r
7265         </taxonomy>\r
7266       </clade>\r
7267     </clade>\r
7268   </clade>\r
7269 </phylogeny>\r
7270 </phyloxml>