forester/data/tol_150.xml

   1 <?xml version="1.0" encoding="UTF-8"?>\r
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
   3 <phylogeny rooted="true" rerootable="false">\r
   4   <clade>\r
   5     <taxonomy>\r
   6       <id provider="uniprot">131567</id>\r
   7       <scientific_name>cellular organisms</scientific_name>\r
   8     </taxonomy>\r
   9     <clade>\r
  10       <taxonomy>\r
  11         <scientific_name>Neomura</scientific_name>\r
  12       </taxonomy>\r
  13       <clade>\r
  14         <taxonomy>\r
  15           <id provider="uniprot">2759</id>\r
  16           <scientific_name>Eukaryota</scientific_name>\r
  17           <rank>superkingdom</rank>\r
  18         </taxonomy>\r
  19         <clade>\r
  20           <name>Unikonta</name>\r
  21           <clade>\r
  22             <taxonomy>\r
  23               <id provider="uniprot">33154</id>\r
  24               <scientific_name>Opisthokonta</scientific_name>\r
  25               <common_name>Fungi/Metazoa group</common_name>\r
  26             </taxonomy>\r
  27             <clade>\r
  28               <taxonomy>\r
  29                 <scientific_name>Holozoa</scientific_name>\r
  30               </taxonomy>\r
  31               <clade>\r
  32                 <name>Choanoflagellatea &amp; Metazoa</name>\r
  33                 <clade>\r
  34                   <taxonomy>\r
  35                     <id provider="uniprot">33208</id>\r
  36                     <scientific_name>Metazoa</scientific_name>\r
  37                     <rank>kingdom</rank>\r
  38                   </taxonomy>\r
  39                   <clade>\r
  40                     <taxonomy>\r
  41                       <id provider="uniprot">6072</id>\r
  42                       <scientific_name>Eumetazoa</scientific_name>\r
  43                     </taxonomy>\r
  44                     <reference doi="10.1038/nature06614">\r
  45                     </reference>\r
  46                     <clade>\r
  47                       <name>Bilateria &amp; Cnidaria</name>\r
  48                       <clade>\r
  49                         <taxonomy>\r
  50                           <id provider="uniprot">33213</id>\r
  51                           <scientific_name>Bilateria</scientific_name>\r
  52                         </taxonomy>\r
  53                         <clade>\r
  54                           <taxonomy>\r
  55                             <id provider="uniprot">33511</id>\r
  56                             <scientific_name>Deuterostomia</scientific_name>\r
  57                           </taxonomy>\r
  58                           <reference doi="10.1038/nature04336">\r
  59                           </reference>\r
  60                           <clade>\r
  61                             <taxonomy>\r
  62                               <id provider="uniprot">7711</id>\r
  63                               <scientific_name>Chordata</scientific_name>\r
  64                               <rank>phylum</rank>\r
  65                             </taxonomy>\r
  66                             <clade>\r
  67                               <name>Urochordata &amp; Vertebrata</name>\r
  68                               <clade>\r
  69                                 <taxonomy>\r
  70                                   <id provider="uniprot">7742</id>\r
  71                                   <scientific_name>Vertebrata</scientific_name>\r
  72                                 </taxonomy>\r
  73                                 <clade>\r
  74                                   <taxonomy>\r
  75                                     <id provider="uniprot">7776</id>\r
  76                                     <scientific_name>Gnathostomata</scientific_name>\r
  77                                     <common_name>jawed vertebrates</common_name>\r
  78                                     <rank>superclass</rank>\r
  79                                   </taxonomy>\r
  80                                   <clade>\r
  81                                     <taxonomy>\r
  82                                       <id provider="uniprot">117571</id>\r
  83                                       <scientific_name>Euteleostomi</scientific_name>\r
  84                                       <common_name>bony vertebrates</common_name>\r
  85                                     </taxonomy>\r
  86                                     <clade>\r
  87                                       <taxonomy>\r
  88                                         <id provider="uniprot">8287</id>\r
  89                                         <scientific_name>Sarcopterygii</scientific_name>\r
  90                                         <common_name>lobe-finned fish</common_name>\r
  91                                       </taxonomy>\r
  92                                       <clade>\r
  93                                         <taxonomy>\r
  94                                           <id provider="uniprot">32523</id>\r
  95                                           <scientific_name>Tetrapoda</scientific_name>\r
  96                                         </taxonomy>\r
  97                                         <clade>\r
  98                                           <taxonomy>\r
  99                                             <id provider="uniprot">32524</id>\r
 100                                             <scientific_name>Amniota</scientific_name>\r
 101                                           </taxonomy>\r
 102                                           <clade>\r
 103                                             <taxonomy>\r
 104                                               <id provider="uniprot">40674</id>\r
 105                                               <scientific_name>Mammalia</scientific_name>\r
 106                                               <rank>class</rank>\r
 107                                             </taxonomy>\r
 108                                             <clade>\r
 109                                               <name>Theria</name>\r
 110                                               <clade>\r
 111                                                 <taxonomy>\r
 112                                                   <id provider="uniprot">9347</id>\r
 113                                                   <scientific_name>Eutheria</scientific_name>\r
 114                                                   <common_name>Placental mammals</common_name>\r
 115                                                 </taxonomy>\r
 116                                                 <reference doi="10.1002/bies.200900053">\r
 117                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
 118                                                 </reference>\r
 119                                                 <clade>\r
 120                                                   <taxonomy>\r
 121                                                     <scientific_name>Boreoeutheria</scientific_name>\r
 122                                                     <synonym>Boreotheria</synonym>\r
 123                                                   </taxonomy>\r
 124                                                   <clade>\r
 125                                                     <taxonomy>\r
 126                                                       <id provider="uniprot">314146</id>\r
 127                                                       <scientific_name>Euarchontoglires</scientific_name>\r
 128                                                       <rank>superorder</rank>\r
 129                                                     </taxonomy>\r
 130                                                     <clade>\r
 131                                                       <taxonomy>\r
 132                                                         <scientific_name>Euarchonta</scientific_name>\r
 133                                                       </taxonomy>\r
 134                                                       <clade>\r
 135                                                         <taxonomy>\r
 136                                                           <id provider="uniprot">9443</id>\r
 137                                                           <scientific_name>Primates</scientific_name>\r
 138                                                           <rank>order</rank>\r
 139                                                         </taxonomy>\r
 140                                                         <clade>\r
 141                                                           <taxonomy>\r
 142                                                             <id provider="uniprot">376913</id>\r
 143                                                             <scientific_name>Haplorrhini</scientific_name>\r
 144                                                             <rank>suborder</rank>\r
 145                                                           </taxonomy>\r
 146                                                           <clade>\r
 147                                                             <taxonomy>\r
 148                                                               <id provider="uniprot">314293</id>\r
 149                                                               <scientific_name>Simiiformes</scientific_name>\r
 150                                                               <rank>infraorder</rank>\r
 151                                                             </taxonomy>\r
 152                                                             <clade>\r
 153                                                               <taxonomy>\r
 154                                                                 <id provider="uniprot">9526</id>\r
 155                                                                 <scientific_name>Catarrhini</scientific_name>\r
 156                                                               </taxonomy>\r
 157                                                               <clade>\r
 158                                                                 <taxonomy>\r
 159                                                                   <id provider="uniprot">314295</id>\r
 160                                                                   <scientific_name>Hominoidea</scientific_name>\r
 161                                                                   <common_name>Apes</common_name>\r
 162                                                                   <rank>superfamily</rank>\r
 163                                                                 </taxonomy>\r
 164                                                                 <clade>\r
 165                                                                   <taxonomy>\r
 166                                                                     <id provider="uniprot">9604</id>\r
 167                                                                     <scientific_name>Hominidae</scientific_name>\r
 168                                                                     <common_name>Great apes</common_name>\r
 169                                                                     <rank>family</rank>\r
 170                                                                   </taxonomy>\r
 171                                                                   <clade>\r
 172                                                                     <taxonomy>\r
 173                                                                       <id provider="uniprot">207598</id>\r
 174                                                                       <scientific_name>Homininae</scientific_name>\r
 175                                                                       <rank>subfamily</rank>\r
 176                                                                     </taxonomy>\r
 177                                                                     <clade>\r
 178                                                                       <taxonomy>\r
 179                                                                         <scientific_name>Hominini</scientific_name>\r
 180                                                                         <rank>tribe</rank>\r
 181                                                                       </taxonomy>\r
 182                                                                       <clade>\r
 183                                                                         <taxonomy>\r
 184                                                                           <id provider="uniprot">9606</id>\r
 185                                                                           <code>HUMAN</code>\r
 186                                                                           <scientific_name>Homo sapiens</scientific_name>\r
 187                                                                           <common_name>Human</common_name>\r
 188                                                                           <rank>species</rank>\r
 189                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
 190                                                                         </taxonomy>\r
 191                                                                       </clade>\r
 192                                                                       <clade>\r
 193                                                                         <taxonomy>\r
 194                                                                           <id provider="uniprot">9598</id>\r
 195                                                                           <code>PANTR</code>\r
 196                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
 197                                                                           <common_name>Chimpanzee</common_name>\r
 198                                                                           <rank>species</rank>\r
 199                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
 200                                                                         </taxonomy>\r
 201                                                                       </clade>\r
 202                                                                     </clade>\r
 203                                                                     <clade>\r
 204                                                                       <taxonomy>\r
 205                                                                         <id provider="uniprot">9595</id>\r
 206                                                                         <code>GORGO</code>\r
 207                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
 208                                                                         <common_name>Western lowland gorilla</common_name>\r
 209                                                                         <rank>subspecies</rank>\r
 210                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
 211                                                                       </taxonomy>\r
 212                                                                     </clade>\r
 213                                                                   </clade>\r
 214                                                                   <clade>\r
 215                                                                     <taxonomy>\r
 216                                                                       <id provider="uniprot">9601</id>\r
 217                                                                       <code>PONAB</code>\r
 218                                                                       <scientific_name>Pongo abelii</scientific_name>\r
 219                                                                       <common_name>Sumatran orangutan</common_name>\r
 220                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
 221                                                                       <rank>species</rank>\r
 222                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>\r
 223                                                                     </taxonomy>\r
 224                                                                   </clade>\r
 225                                                                 </clade>\r
 226                                                                 <clade>\r
 227                                                                   <taxonomy>\r
 228                                                                     <id provider="uniprot">61853</id>\r
 229                                                                     <code>NOMLE</code>\r
 230                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
 231                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
 232                                                                     <synonym>Hylobates leucogenys</synonym>\r
 233                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
 234                                                                     <rank>species</rank>\r
 235                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
 236                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
 237                                                                   </taxonomy>\r
 238                                                                 </clade>\r
 239                                                               </clade>\r
 240                                                               <clade>\r
 241                                                                 <taxonomy>\r
 242                                                                   <id provider="uniprot">9528</id>\r
 243                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
 244                                                                   <rank>subfamily</rank>\r
 245                                                                 </taxonomy>\r
 246                                                                 <clade>\r
 247                                                                   <taxonomy>\r
 248                                                                     <id provider="uniprot">9544</id>\r
 249                                                                     <code>MACMU</code>\r
 250                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
 251                                                                     <common_name>Rhesus macaque</common_name>\r
 252                                                                     <rank>species</rank>\r
 253                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>\r
 254                                                                   </taxonomy>\r
 255                                                                 </clade>\r
 256                                                                 <clade>\r
 257                                                                   <taxonomy>\r
 258                                                                     <id provider="uniprot">9557</id>\r
 259                                                                     <code>PAPHA</code>\r
 260                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
 261                                                                     <common_name>Hamadryas baboon</common_name>\r
 262                                                                     <rank>species</rank>\r
 263                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
 264                                                                   </taxonomy>\r
 265                                                                 </clade>\r
 266                                                               </clade>\r
 267                                                             </clade>\r
 268                                                             <clade>\r
 269                                                               <taxonomy>\r
 270                                                                 <id provider="uniprot">9483</id>\r
 271                                                                 <code>CALJA</code>\r
 272                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
 273                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
 274                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
 275                                                                 <rank>species</rank>\r
 276                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
 277                                                               </taxonomy>\r
 278                                                             </clade>\r
 279                                                           </clade>\r
 280                                                           <clade>\r
 281                                                             <taxonomy>\r
 282                                                               <id provider="uniprot">9478</id>\r
 283                                                               <code>TARSY</code>\r
 284                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
 285                                                               <common_name>Philippine tarsier</common_name>\r
 286                                                               <rank>species</rank>\r
 287                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
 288                                                             </taxonomy>\r
 289                                                           </clade>\r
 290                                                         </clade>\r
 291                                                         <clade>\r
 292                                                           <taxonomy>\r
 293                                                             <id provider="uniprot">376911</id>\r
 294                                                             <scientific_name>Strepsirrhini</scientific_name>\r
 295                                                             <rank>suborder</rank>\r
 296                                                           </taxonomy>\r
 297                                                           <clade>\r
 298                                                             <taxonomy>\r
 299                                                               <id provider="uniprot">30608</id>\r
 300                                                               <code>MICMU</code>\r
 301                                                               <scientific_name>Microcebus murinus</scientific_name>\r
 302                                                               <common_name>Lesser mouse lemur</common_name>\r
 303                                                               <synonym>Gray Mouse Lemur</synonym>\r
 304                                                               <rank>species</rank>\r
 305                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
 306                                                             </taxonomy>\r
 307                                                           </clade>\r
 308                                                           <clade>\r
 309                                                             <taxonomy>\r
 310                                                               <id provider="uniprot">30611</id>\r
 311                                                               <code>OTOGA</code>\r
 312                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
 313                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
 314                                                               <synonym>Galago garnetti</synonym>\r
 315                                                               <synonym>Small-eared galago</synonym>\r
 316                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
 317                                                               <rank>species</rank>\r
 318                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
 319                                                             </taxonomy>\r
 320                                                           </clade>\r
 321                                                         </clade>\r
 322                                                       </clade>\r
 323                                                       <clade>\r
 324                                                         <taxonomy>\r
 325                                                           <id provider="uniprot">37347</id>\r
 326                                                           <code>TUPBE</code>\r
 327                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
 328                                                           <common_name>Common tree shrew</common_name>\r
 329                                                           <synonym>Tupaia glis belangeri</synonym>\r
 330                                                           <rank>species</rank>\r
 331                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
 332                                                         </taxonomy>\r
 333                                                       </clade>\r
 334                                                     </clade>\r
 335                                                     <clade>\r
 336                                                       <taxonomy>\r
 337                                                         <id provider="uniprot">314147</id>\r
 338                                                         <scientific_name>Glires</scientific_name>\r
 339                                                         <common_name>Rodents and rabbits</common_name>\r
 340                                                       </taxonomy>\r
 341                                                       <clade>\r
 342                                                         <taxonomy>\r
 343                                                           <id provider="uniprot">9989</id>\r
 344                                                           <scientific_name>Rodentia</scientific_name>\r
 345                                                           <rank>order</rank>\r
 346                                                         </taxonomy>\r
 347                                                         <clade>\r
 348                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>\r
 349                                                           <reference doi="10.1186/1471-2148-9-71">\r
 350                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
 351                                                           </reference>\r
 352                                                           <clade>\r
 353                                                             <taxonomy>\r
 354                                                               <common_name>Mouse-related clade</common_name>\r
 355                                                             </taxonomy>\r
 356                                                             <clade>\r
 357                                                               <taxonomy>\r
 358                                                                 <id provider="uniprot">337687</id>\r
 359                                                                 <scientific_name>Muroidea</scientific_name>\r
 360                                                               </taxonomy>\r
 361                                                               <clade>\r
 362                                                                 <taxonomy>\r
 363                                                                   <id provider="uniprot">39107</id>\r
 364                                                                   <scientific_name>Murinae</scientific_name>\r
 365                                                                   <rank>subfamily</rank>\r
 366                                                                 </taxonomy>\r
 367                                                                 <clade>\r
 368                                                                   <taxonomy>\r
 369                                                                     <id provider="uniprot">10090</id>\r
 370                                                                     <code>MOUSE</code>\r
 371                                                                     <scientific_name>Mus musculus</scientific_name>\r
 372                                                                     <common_name>Mouse</common_name>\r
 373                                                                     <rank>species</rank>\r
 374                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>\r
 375                                                                   </taxonomy>\r
 376                                                                 </clade>\r
 377                                                                 <clade>\r
 378                                                                   <taxonomy>\r
 379                                                                     <id provider="uniprot">10116</id>\r
 380                                                                     <code>RAT</code>\r
 381                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
 382                                                                     <common_name>Rat</common_name>\r
 383                                                                     <rank>species</rank>\r
 384                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
 385                                                                   </taxonomy>\r
 386                                                                 </clade>\r
 387                                                               </clade>\r
 388                                                               <clade>\r
 389                                                                 <taxonomy>\r
 390                                                                   <id provider="uniprot">10036</id>\r
 391                                                                   <code>MESAU</code>\r
 392                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
 393                                                                   <common_name>Golden hamster</common_name>\r
 394                                                                   <rank>species</rank>\r
 395                                                                   <uri>http://www.dicts.info/img/ud/syrian_hamster.jpg</uri>\r
 396                                                                 </taxonomy>\r
 397                                                               </clade>\r
 398                                                             </clade>\r
 399                                                             <clade>\r
 400                                                               <taxonomy>\r
 401                                                                 <id provider="uniprot">10020</id>\r
 402                                                                 <code>DIPOR</code>\r
 403                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
 404                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
 405                                                                 <rank>species</rank>\r
 406                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
 407                                                               </taxonomy>\r
 408                                                             </clade>\r
 409                                                           </clade>\r
 410                                                           <clade>\r
 411                                                             <taxonomy>\r
 412                                                               <id provider="uniprot">10141</id>\r
 413                                                               <code>CAVPO</code>\r
 414                                                               <scientific_name>Cavia porcellus</scientific_name>\r
 415                                                               <common_name>Guinea pig</common_name>\r
 416                                                               <rank>species</rank>\r
 417                                                               <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>\r
 418                                                             </taxonomy>\r
 419                                                           </clade>\r
 420                                                         </clade>\r
 421                                                         <clade>\r
 422                                                           <taxonomy>\r
 423                                                             <id provider="uniprot">43179</id>\r
 424                                                             <code>SPETR</code>\r
 425                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
 426                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
 427                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
 428                                                             <rank>species</rank>\r
 429                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
 430                                                           </taxonomy>\r
 431                                                         </clade>\r
 432                                                       </clade>\r
 433                                                       <clade>\r
 434                                                         <taxonomy>\r
 435                                                           <id provider="uniprot">9975</id>\r
 436                                                           <scientific_name>Lagomorpha</scientific_name>\r
 437                                                           <common_name>Rabbits, hares, pikas</common_name>\r
 438                                                           <rank>order</rank>\r
 439                                                         </taxonomy>\r
 440                                                         <clade>\r
 441                                                           <taxonomy>\r
 442                                                             <id provider="uniprot">9978</id>\r
 443                                                             <code>OCHPR</code>\r
 444                                                             <scientific_name>Ochotona princeps</scientific_name>\r
 445                                                             <common_name>Southern American pika</common_name>\r
 446                                                             <rank>species</rank>\r
 447                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
 448                                                           </taxonomy>\r
 449                                                         </clade>\r
 450                                                         <clade>\r
 451                                                           <taxonomy>\r
 452                                                             <id provider="uniprot">9986</id>\r
 453                                                             <code>RABIT</code>\r
 454                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
 455                                                             <common_name>Rabbit</common_name>\r
 456                                                             <rank>species</rank>\r
 457                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>\r
 458                                                           </taxonomy>\r
 459                                                         </clade>\r
 460                                                       </clade>\r
 461                                                     </clade>\r
 462                                                   </clade>\r
 463                                                   <clade>\r
 464                                                     <taxonomy>\r
 465                                                       <id provider="uniprot">314145</id>\r
 466                                                       <scientific_name>Laurasiatheria</scientific_name>\r
 467                                                       <rank>superorder</rank>\r
 468                                                     </taxonomy>\r
 469                                                     <clade>\r
 470                                                       <taxonomy>\r
 471                                                         <scientific_name>Scrotifera</scientific_name>\r
 472                                                       </taxonomy>\r
 473                                                       <clade>\r
 474                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
 475                                                         <clade>\r
 476                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
 477                                                           <clade>\r
 478                                                             <taxonomy>\r
 479                                                               <id provider="uniprot">91561</id>\r
 480                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
 481                                                               <common_name>Even-toed ungulates</common_name>\r
 482                                                             </taxonomy>\r
 483                                                             <clade>\r
 484                                                               <name>Cetruminantia &amp; Suina</name>\r
 485                                                               <clade>\r
 486                                                                 <taxonomy>\r
 487                                                                   <scientific_name>Cetruminantia</scientific_name>\r
 488                                                                 </taxonomy>\r
 489                                                                 <clade>\r
 490                                                                   <taxonomy>\r
 491                                                                     <id provider="uniprot">9895</id>\r
 492                                                                     <scientific_name>Bovidae</scientific_name>\r
 493                                                                     <rank>family</rank>\r
 494                                                                   </taxonomy>\r
 495                                                                   <clade>\r
 496                                                                     <taxonomy>\r
 497                                                                       <id provider="uniprot">9913</id>\r
 498                                                                       <code>BOVIN</code>\r
 499                                                                       <scientific_name>Bos taurus</scientific_name>\r
 500                                                                       <common_name>Bovine</common_name>\r
 501                                                                       <synonym>Bos bovis</synonym>\r
 502                                                                       <rank>species</rank>\r
 503                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>\r
 504                                                                     </taxonomy>\r
 505                                                                   </clade>\r
 506                                                                   <clade>\r
 507                                                                     <taxonomy>\r
 508                                                                       <id provider="uniprot">9940</id>\r
 509                                                                       <code>SHEEP</code>\r
 510                                                                       <scientific_name>Ovis aries</scientific_name>\r
 511                                                                       <common_name>Sheep</common_name>\r
 512                                                                       <rank>species</rank>\r
 513                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
 514                                                                     </taxonomy>\r
 515                                                                   </clade>\r
 516                                                                 </clade>\r
 517                                                                 <clade>\r
 518                                                                   <taxonomy>\r
 519                                                                     <id provider="uniprot">9721</id>\r
 520                                                                     <scientific_name>Cetacea</scientific_name>\r
 521                                                                     <common_name>Whales</common_name>\r
 522                                                                     <rank>order</rank>\r
 523                                                                   </taxonomy>\r
 524                                                                   <clade>\r
 525                                                                     <taxonomy>\r
 526                                                                       <id provider="uniprot">9771</id>\r
 527                                                                       <code>BALMU</code>\r
 528                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
 529                                                                       <common_name>Blue whale</common_name>\r
 530                                                                       <rank>species</rank>\r
 531                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
 532                                                                     </taxonomy>\r
 533                                                                   </clade>\r
 534                                                                   <clade>\r
 535                                                                     <taxonomy>\r
 536                                                                       <id provider="uniprot">9739</id>\r
 537                                                                       <code>TURTR</code>\r
 538                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
 539                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
 540                                                                       <synonym>Delphinus truncatus</synonym>\r
 541                                                                       <rank>species</rank>\r
 542                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
 543                                                                     </taxonomy>\r
 544                                                                   </clade>\r
 545                                                                 </clade>\r
 546                                                               </clade>\r
 547                                                               <clade>\r
 548                                                                 <taxonomy>\r
 549                                                                   <id provider="uniprot">9823</id>\r
 550                                                                   <code>PIG</code>\r
 551                                                                   <scientific_name>Sus scrofa</scientific_name>\r
 552                                                                   <common_name>Pig</common_name>\r
 553                                                                   <rank>species</rank>\r
 554                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
 555                                                                 </taxonomy>\r
 556                                                               </clade>\r
 557                                                             </clade>\r
 558                                                             <clade>\r
 559                                                               <taxonomy>\r
 560                                                                 <id provider="uniprot">30538</id>\r
 561                                                                 <code>LAMPA</code>\r
 562                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
 563                                                                 <common_name>Alpaca</common_name>\r
 564                                                                 <synonym>Lama pacos</synonym>\r
 565                                                                 <rank>species</rank>\r
 566                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>\r
 567                                                               </taxonomy>\r
 568                                                             </clade>\r
 569                                                           </clade>\r
 570                                                           <clade>\r
 571                                                             <taxonomy>\r
 572                                                               <id provider="uniprot">9796</id>\r
 573                                                               <code>HORSE</code>\r
 574                                                               <scientific_name>Equus caballus</scientific_name>\r
 575                                                               <common_name>Horse</common_name>\r
 576                                                               <rank>species</rank>\r
 577                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
 578                                                             </taxonomy>\r
 579                                                           </clade>\r
 580                                                         </clade>\r
 581                                                         <clade>\r
 582                                                           <taxonomy>\r
 583                                                             <id provider="uniprot">9397</id>\r
 584                                                             <scientific_name>Chiroptera</scientific_name>\r
 585                                                             <common_name>Bats</common_name>\r
 586                                                             <rank>order</rank>\r
 587                                                           </taxonomy>\r
 588                                                           <clade>\r
 589                                                             <taxonomy>\r
 590                                                               <id provider="uniprot">59463</id>\r
 591                                                               <code>MYOLU</code>\r
 592                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
 593                                                               <common_name>Little brown bat</common_name>\r
 594                                                               <rank>species</rank>\r
 595                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
 596                                                             </taxonomy>\r
 597                                                           </clade>\r
 598                                                           <clade>\r
 599                                                             <taxonomy>\r
 600                                                               <id provider="uniprot">132908</id>\r
 601                                                               <code>PTEVA</code>\r
 602                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
 603                                                               <common_name>Large flying fox</common_name>\r
 604                                                               <rank>species</rank>\r
 605                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
 606                                                             </taxonomy>\r
 607                                                           </clade>\r
 608                                                         </clade>\r
 609                                                       </clade>\r
 610                                                       <clade>\r
 611                                                         <name>Carnivora</name>\r
 612                                                         <taxonomy>\r
 613                                                           <id provider="uniprot">33554</id>\r
 614                                                           <scientific_name>Carnivora</scientific_name>\r
 615                                                           <rank>order</rank>\r
 616                                                         </taxonomy>\r
 617                                                         <clade>\r
 618                                                           <taxonomy>\r
 619                                                             <id provider="uniprot">379584</id>\r
 620                                                             <scientific_name>Caniformia</scientific_name>\r
 621                                                             <rank>suborder</rank>\r
 622                                                           </taxonomy>\r
 623                                                           <clade>\r
 624                                                             <taxonomy>\r
 625                                                               <id provider="uniprot">9646</id>\r
 626                                                               <code>AILME</code>\r
 627                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
 628                                                               <common_name>Giant panda</common_name>\r
 629                                                               <rank>species</rank>\r
 630                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
 631                                                             </taxonomy>\r
 632                                                           </clade>\r
 633                                                           <clade>\r
 634                                                             <taxonomy>\r
 635                                                               <id provider="uniprot">9615</id>\r
 636                                                               <code>CANFA</code>\r
 637                                                               <scientific_name>Canis familiaris</scientific_name>\r
 638                                                               <common_name>Dog</common_name>\r
 639                                                               <synonym>Canis lupus familiaris</synonym>\r
 640                                                               <rank>subspecies</rank>\r
 641                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
 642                                                             </taxonomy>\r
 643                                                           </clade>\r
 644                                                         </clade>\r
 645                                                         <clade>\r
 646                                                           <taxonomy>\r
 647                                                             <id provider="uniprot">9685</id>\r
 648                                                             <code>FELCA</code>\r
 649                                                             <scientific_name>Felis catus</scientific_name>\r
 650                                                             <common_name>Cat</common_name>\r
 651                                                             <synonym>Felis silvestris catus</synonym>\r
 652                                                             <rank>species</rank>\r
 653                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
 654                                                           </taxonomy>\r
 655                                                         </clade>\r
 656                                                       </clade>\r
 657                                                     </clade>\r
 658                                                     <clade>\r
 659                                                       <taxonomy>\r
 660                                                         <id provider="uniprot">9362</id>\r
 661                                                         <scientific_name>Insectivora</scientific_name>\r
 662                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
 663                                                         <rank>order</rank>\r
 664                                                       </taxonomy>\r
 665                                                       <clade>\r
 666                                                         <taxonomy>\r
 667                                                           <id provider="uniprot">9365</id>\r
 668                                                           <code>ERIEU</code>\r
 669                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
 670                                                           <common_name>Western European hedgehog</common_name>\r
 671                                                           <rank>species</rank>\r
 672                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
 673                                                         </taxonomy>\r
 674                                                       </clade>\r
 675                                                       <clade>\r
 676                                                         <taxonomy>\r
 677                                                           <id provider="uniprot">42254</id>\r
 678                                                           <code>SORAR</code>\r
 679                                                           <scientific_name>Sorex araneus</scientific_name>\r
 680                                                           <common_name>Eurasian common shrew</common_name>\r
 681                                                           <synonym>European shrew</synonym>\r
 682                                                           <rank>species</rank>\r
 683                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
 684                                                         </taxonomy>\r
 685                                                       </clade>\r
 686                                                     </clade>\r
 687                                                   </clade>\r
 688                                                 </clade>\r
 689                                                 <clade>\r
 690                                                   <taxonomy>\r
 691                                                     <scientific_name>Atlantogenata</scientific_name>\r
 692                                                   </taxonomy>\r
 693                                                   <clade>\r
 694                                                     <taxonomy>\r
 695                                                       <id provider="uniprot">311790</id>\r
 696                                                       <scientific_name>Afrotheria</scientific_name>\r
 697                                                       <rank>superorder</rank>\r
 698                                                     </taxonomy>\r
 699                                                     <clade>\r
 700                                                       <taxonomy>\r
 701                                                         <scientific_name>Paenungulata</scientific_name>\r
 702                                                       </taxonomy>\r
 703                                                       <clade>\r
 704                                                         <taxonomy>\r
 705                                                           <id provider="uniprot">9785</id>\r
 706                                                           <code>LOXAF</code>\r
 707                                                           <scientific_name>Loxodonta africana</scientific_name>\r
 708                                                           <common_name>African savanna elephant</common_name>\r
 709                                                           <rank>species</rank>\r
 710                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
 711                                                         </taxonomy>\r
 712                                                       </clade>\r
 713                                                       <clade>\r
 714                                                         <taxonomy>\r
 715                                                           <id provider="uniprot">9813</id>\r
 716                                                           <code>PROCA</code>\r
 717                                                           <scientific_name>Procavia capensis</scientific_name>\r
 718                                                           <common_name>Cape hyrax</common_name>\r
 719                                                           <synonym>Rock dassie</synonym>\r
 720                                                           <rank>species</rank>\r
 721                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
 722                                                         </taxonomy>\r
 723                                                       </clade>\r
 724                                                     </clade>\r
 725                                                     <clade>\r
 726                                                       <taxonomy>\r
 727                                                         <id provider="uniprot">9371</id>\r
 728                                                         <code>ECHTE</code>\r
 729                                                         <scientific_name>Echinops telfairi</scientific_name>\r
 730                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
 731                                                         <rank>species</rank>\r
 732                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
 733                                                       </taxonomy>\r
 734                                                     </clade>\r
 735                                                   </clade>\r
 736                                                   <clade>\r
 737                                                     <taxonomy>\r
 738                                                       <id provider="uniprot">9348</id>\r
 739                                                       <scientific_name>Xenarthra</scientific_name>\r
 740                                                       <synonym>Edentata</synonym>\r
 741                                                       <rank>superorder</rank>\r
 742                                                     </taxonomy>\r
 743                                                     <clade>\r
 744                                                       <taxonomy>\r
 745                                                         <id provider="uniprot">9358</id>\r
 746                                                         <code>CHOHO</code>\r
 747                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
 748                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
 749                                                         <rank>species</rank>\r
 750                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
 751                                                       </taxonomy>\r
 752                                                     </clade>\r
 753                                                     <clade>\r
 754                                                       <taxonomy>\r
 755                                                         <id provider="uniprot">9361</id>\r
 756                                                         <code>DASNO</code>\r
 757                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
 758                                                         <common_name>Nine-banded armadillo</common_name>\r
 759                                                         <rank>species</rank>\r
 760                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
 761                                                       </taxonomy>\r
 762                                                     </clade>\r
 763                                                   </clade>\r
 764                                                 </clade>\r
 765                                               </clade>\r
 766                                               <clade>\r
 767                                                 <taxonomy>\r
 768                                                   <id provider="uniprot">9263</id>\r
 769                                                   <scientific_name>Metatheria</scientific_name>\r
 770                                                   <common_name>Marsupials</common_name>\r
 771                                                 </taxonomy>\r
 772                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
 773                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
 774                                                 </reference>\r
 775                                                 <reference>\r
 776                                                 </reference>\r
 777                                                 <clade>\r
 778                                                   <taxonomy>\r
 779                                                     <scientific_name>Eometatheria</scientific_name>\r
 780                                                   </taxonomy>\r
 781                                                   <clade>\r
 782                                                     <taxonomy>\r
 783                                                       <id provider="uniprot">9315</id>\r
 784                                                       <code>MACEU</code>\r
 785                                                       <scientific_name>Macropus eugenii</scientific_name>\r
 786                                                       <common_name>Tammar wallaby</common_name>\r
 787                                                       <rank>species</rank>\r
 788                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
 789                                                     </taxonomy>\r
 790                                                   </clade>\r
 791                                                   <clade>\r
 792                                                     <taxonomy>\r
 793                                                       <id provider="uniprot">9305</id>\r
 794                                                       <code>SARHA</code>\r
 795                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
 796                                                       <common_name>Tasmanian devil</common_name>\r
 797                                                       <synonym>Sarcophilus laniarius</synonym>\r
 798                                                       <rank>species</rank>\r
 799                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
 800                                                     </taxonomy>\r
 801                                                   </clade>\r
 802                                                 </clade>\r
 803                                                 <clade>\r
 804                                                   <taxonomy>\r
 805                                                     <id provider="uniprot">13616</id>\r
 806                                                     <code>MONDO</code>\r
 807                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
 808                                                     <common_name>Short-tailed gray opossum</common_name>\r
 809                                                     <rank>species</rank>\r
 810                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
 811                                                   </taxonomy>\r
 812                                                 </clade>\r
 813                                               </clade>\r
 814                                             </clade>\r
 815                                             <clade>\r
 816                                               <taxonomy>\r
 817                                                 <id provider="uniprot">9258</id>\r
 818                                                 <code>ORNAN</code>\r
 819                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
 820                                                 <common_name>Duckbill platypus</common_name>\r
 821                                                 <rank>species</rank>\r
 822                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>\r
 823                                               </taxonomy>\r
 824                                             </clade>\r
 825                                           </clade>\r
 826                                           <clade>\r
 827                                             <taxonomy>\r
 828                                               <id provider="uniprot">8457</id>\r
 829                                               <scientific_name>Sauropsida</scientific_name>\r
 830                                             </taxonomy>\r
 831                                             <clade>\r
 832                                               <name>Archosauria &amp; Testudines</name>\r
 833                                               <reference doi="10.1038/ng.2615">\r
 834                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
 835                                               </reference>\r
 836                                               <reference>\r
 837                                               </reference>\r
 838                                               <reference>\r
 839                                               </reference>\r
 840                                               <clade>\r
 841                                                 <taxonomy>\r
 842                                                   <id provider="uniprot">8492</id>\r
 843                                                   <scientific_name>Archosauria</scientific_name>\r
 844                                                 </taxonomy>\r
 845                                                 <clade>\r
 846                                                   <name>Neognathae</name>\r
 847                                                   <taxonomy>\r
 848                                                     <id provider="uniprot">8825</id>\r
 849                                                     <scientific_name>Neognathae</scientific_name>\r
 850                                                     <rank>superorder</rank>\r
 851                                                   </taxonomy>\r
 852                                                   <clade>\r
 853                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
 854                                                     <clade>\r
 855                                                       <taxonomy>\r
 856                                                         <id provider="uniprot">9005</id>\r
 857                                                         <scientific_name>Phasianidae</scientific_name>\r
 858                                                         <rank>family</rank>\r
 859                                                       </taxonomy>\r
 860                                                       <clade>\r
 861                                                         <taxonomy>\r
 862                                                           <id provider="uniprot">9031</id>\r
 863                                                           <code>CHICK</code>\r
 864                                                           <scientific_name>Gallus gallus</scientific_name>\r
 865                                                           <common_name>Chicken</common_name>\r
 866                                                           <synonym>Gallus domesticus</synonym>\r
 867                                                           <rank>species</rank>\r
 868                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
 869                                                         </taxonomy>\r
 870                                                       </clade>\r
 871                                                       <clade>\r
 872                                                         <taxonomy>\r
 873                                                           <id provider="uniprot">9103</id>\r
 874                                                           <code>MELGA</code>\r
 875                                                           <scientific_name>Meleagris gallopavo</scientific_name>\r
 876                                                           <common_name>Common turkey</common_name>\r
 877                                                           <rank>species</rank>\r
 878                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
 879                                                         </taxonomy>\r
 880                                                       </clade>\r
 881                                                     </clade>\r
 882                                                     <clade>\r
 883                                                       <taxonomy>\r
 884                                                         <id provider="uniprot">8839</id>\r
 885                                                         <code>ANAPL</code>\r
 886                                                         <scientific_name>Anas platyrhynchos</scientific_name>\r
 887                                                         <common_name>Domestic duck</common_name>\r
 888                                                         <synonym>Anas boschas</synonym>\r
 889                                                         <rank>species</rank>\r
 890                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
 891                                                       </taxonomy>\r
 892                                                     </clade>\r
 893                                                   </clade>\r
 894                                                   <clade>\r
 895                                                     <taxonomy>\r
 896                                                       <id provider="uniprot">59729</id>\r
 897                                                       <code>TAEGU</code>\r
 898                                                       <scientific_name>Taeniopygia guttata</scientific_name>\r
 899                                                       <common_name>Zebra finch</common_name>\r
 900                                                       <synonym>Poephila guttata</synonym>\r
 901                                                       <rank>species</rank>\r
 902                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
 903                                                     </taxonomy>\r
 904                                                   </clade>\r
 905                                                 </clade>\r
 906                                                 <clade>\r
 907                                                   <taxonomy>\r
 908                                                     <id provider="uniprot">8496</id>\r
 909                                                     <code>ALLMI</code>\r
 910                                                     <scientific_name>Alligator mississippiensis</scientific_name>\r
 911                                                     <common_name>American alligator</common_name>\r
 912                                                     <rank>species</rank>\r
 913                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>\r
 914                                                   </taxonomy>\r
 915                                                 </clade>\r
 916                                               </clade>\r
 917                                               <clade>\r
 918                                                 <taxonomy>\r
 919                                                   <id provider="uniprot">13735</id>\r
 920                                                   <code>PELSI</code>\r
 921                                                   <scientific_name>Pelodiscus sinensis</scientific_name>\r
 922                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>\r
 923                                                   <common_name>Chinese softshell turtle</common_name>\r
 924                                                   <synonym>Trionyx sinensis</synonym>\r
 925                                                   <rank>species</rank>\r
 926                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>\r
 927                                                 </taxonomy>\r
 928                                               </clade>\r
 929                                             </clade>\r
 930                                             <clade>\r
 931                                               <taxonomy>\r
 932                                                 <id provider="uniprot">28377</id>\r
 933                                                 <code>ANOCA</code>\r
 934                                                 <scientific_name>Anolis carolinensis</scientific_name>\r
 935                                                 <authority>Voigt, 1832</authority>\r
 936                                                 <common_name>Green anole</common_name>\r
 937                                                 <synonym>American chameleon</synonym>\r
 938                                                 <rank>species</rank>\r
 939                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
 940                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
 941                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg</uri>\r
 942                                               </taxonomy>\r
 943                                             </clade>\r
 944                                           </clade>\r
 945                                         </clade>\r
 946                                         <clade>\r
 947                                           <taxonomy>\r
 948                                             <id provider="uniprot">8353</id>\r
 949                                             <scientific_name>Xenopus</scientific_name>\r
 950                                             <rank>genus</rank>\r
 951                                           </taxonomy>\r
 952                                           <clade>\r
 953                                             <taxonomy>\r
 954                                               <id provider="uniprot">8355</id>\r
 955                                               <code>XENLA</code>\r
 956                                               <scientific_name>Xenopus laevis</scientific_name>\r
 957                                               <authority>Daudin, 1802</authority>\r
 958                                               <common_name>African clawed frog</common_name>\r
 959                                               <synonym>Bufo laevis</synonym>\r
 960                                               <rank>species</rank>\r
 961                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
 962                                             </taxonomy>\r
 963                                           </clade>\r
 964                                           <clade>\r
 965                                             <taxonomy>\r
 966                                               <id provider="uniprot">8364</id>\r
 967                                               <code>XENTR</code>\r
 968                                               <scientific_name>Xenopus tropicalis</scientific_name>\r
 969                                               <common_name>Western clawed frog</common_name>\r
 970                                               <synonym>Silurana tropicalis</synonym>\r
 971                                               <rank>species</rank>\r
 972                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
 973                                             </taxonomy>\r
 974                                           </clade>\r
 975                                         </clade>\r
 976                                       </clade>\r
 977                                       <clade>\r
 978                                         <taxonomy>\r
 979                                           <id provider="uniprot">7897</id>\r
 980                                           <code>LATCH</code>\r
 981                                           <scientific_name>Latimeria chalumnae</scientific_name>\r
 982                                           <common_name>West Indian ocean coelacanth</common_name>\r
 983                                           <rank>species</rank>\r
 984                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>\r
 985                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>\r
 986                                         </taxonomy>\r
 987                                       </clade>\r
 988                                     </clade>\r
 989                                     <clade>\r
 990                                       <name>Teleostei</name>\r
 991                                       <taxonomy>\r
 992                                         <id provider="uniprot">32443</id>\r
 993                                         <scientific_name>Teleostei</scientific_name>\r
 994                                       </taxonomy>\r
 995                                       <clade>\r
 996                                         <taxonomy>\r
 997                                           <id provider="uniprot">123368</id>\r
 998                                           <scientific_name>Acanthomorpha</scientific_name>\r
 999                                         </taxonomy>\r
1000                                         <clade>\r
1001                                           <taxonomy>\r
1002                                             <id provider="uniprot">32485</id>\r
1003                                             <scientific_name>Percomorpha</scientific_name>\r
1004                                           </taxonomy>\r
1005                                           <clade>\r
1006                                             <taxonomy>\r
1007                                               <id provider="uniprot">129949</id>\r
1008                                               <scientific_name>Smegmamorpha</scientific_name>\r
1009                                             </taxonomy>\r
1010                                             <clade>\r
1011                                               <taxonomy>\r
1012                                                 <id provider="uniprot">32456</id>\r
1013                                                 <scientific_name>Atherinomorpha</scientific_name>\r
1014                                               </taxonomy>\r
1015                                               <clade>\r
1016                                                 <taxonomy>\r
1017                                                   <id provider="uniprot">8090</id>\r
1018                                                   <code>ORYLA</code>\r
1019                                                   <scientific_name>Oryzias latipes</scientific_name>\r
1020                                                   <common_name>Medaka fish</common_name>\r
1021                                                   <synonym>Japanese ricefish</synonym>\r
1022                                                   <rank>species</rank>\r
1023                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
1024                                                 </taxonomy>\r
1025                                               </clade>\r
1026                                               <clade>\r
1027                                                 <taxonomy>\r
1028                                                   <id provider="uniprot">8083</id>\r
1029                                                   <code>XIPMA</code>\r
1030                                                   <scientific_name>Xiphophorus maculatus</scientific_name>\r
1031                                                   <authority>Guenther, 1866</authority>\r
1032                                                   <common_name>Southern platyfish</common_name>\r
1033                                                   <synonym>Platypoecilus maculatus</synonym>\r
1034                                                   <rank>species</rank>\r
1035                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>\r
1036                                                 </taxonomy>\r
1037                                               </clade>\r
1038                                             </clade>\r
1039                                             <clade>\r
1040                                               <taxonomy>\r
1041                                                 <id provider="uniprot">69293</id>\r
1042                                                 <code>GASAC</code>\r
1043                                                 <scientific_name>Gasterosteus aculeatus</scientific_name>\r
1044                                                 <common_name>Three-spined stickleback</common_name>\r
1045                                                 <rank>species</rank>\r
1046                                                 <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>\r
1047                                               </taxonomy>\r
1048                                             </clade>\r
1049                                           </clade>\r
1050                                           <clade>\r
1051                                             <taxonomy>\r
1052                                               <id provider="uniprot">31031</id>\r
1053                                               <scientific_name>Tetraodontidae</scientific_name>\r
1054                                               <common_name>puffers</common_name>\r
1055                                               <rank>family</rank>\r
1056                                             </taxonomy>\r
1057                                             <clade>\r
1058                                               <taxonomy>\r
1059                                                 <id provider="uniprot">31033</id>\r
1060                                                 <code>TAKRU</code>\r
1061                                                 <scientific_name>Takifugu rubripes</scientific_name>\r
1062                                                 <common_name>Japanese pufferfish</common_name>\r
1063                                                 <synonym>Fugu rubripes</synonym>\r
1064                                                 <rank>species</rank>\r
1065                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
1066                                               </taxonomy>\r
1067                                             </clade>\r
1068                                             <clade>\r
1069                                               <taxonomy>\r
1070                                                 <id provider="uniprot">99883</id>\r
1071                                                 <code>TETNG</code>\r
1072                                                 <scientific_name>Tetraodon nigroviridis</scientific_name>\r
1073                                                 <common_name>Green puffer</common_name>\r
1074                                                 <synonym>Chelonodon nigroviridis</synonym>\r
1075                                                 <rank>species</rank>\r
1076                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
1077                                               </taxonomy>\r
1078                                             </clade>\r
1079                                           </clade>\r
1080                                           <clade>\r
1081                                             <taxonomy>\r
1082                                               <id provider="uniprot">8128</id>\r
1083                                               <code>ORENI</code>\r
1084                                               <scientific_name>Tilapia nilotica</scientific_name>\r
1085                                               <authority>Linnaeus, 1758</authority>\r
1086                                               <common_name>Nile tilapia</common_name>\r
1087                                               <synonym>Tilapia nilotica</synonym>\r
1088                                               <rank>species</rank>\r
1089                                               <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>\r
1090                                             </taxonomy>\r
1091                                           </clade>\r
1092                                         </clade>\r
1093                                         <clade>\r
1094                                           <taxonomy>\r
1095                                             <id provider="uniprot">8049</id>\r
1096                                             <code>GADMO</code>\r
1097                                             <scientific_name>Gadus morhua</scientific_name>\r
1098                                             <common_name>Atlantic cod</common_name>\r
1099                                             <rank>species</rank>\r
1100                                             <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
1101                                           </taxonomy>\r
1102                                         </clade>\r
1103                                       </clade>\r
1104                                       <clade>\r
1105                                         <taxonomy>\r
1106                                           <id provider="uniprot">7955</id>\r
1107                                           <code>DANRE</code>\r
1108                                           <scientific_name>Danio rerio</scientific_name>\r
1109                                           <common_name>Zebrafish</common_name>\r
1110                                           <synonym>Brachydanio rerio</synonym>\r
1111                                           <rank>species</rank>\r
1112                                           <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>\r
1113                                         </taxonomy>\r
1114                                       </clade>\r
1115                                     </clade>\r
1116                                   </clade>\r
1117                                   <clade>\r
1118                                     <taxonomy>\r
1119                                       <id provider="uniprot">7868</id>\r
1120                                       <code>CALMI</code>\r
1121                                       <scientific_name>Callorhynchus milii</scientific_name>\r
1122                                       <common_name>Australian ghost shark</common_name>\r
1123                                       <synonym>Australian ghost shark</synonym>\r
1124                                       <rank>species</rank>\r
1125                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1126                                     </taxonomy>\r
1127                                   </clade>\r
1128                                 </clade>\r
1129                                 <clade>\r
1130                                   <taxonomy>\r
1131                                     <id provider="uniprot">7757</id>\r
1132                                     <code>PETMA</code>\r
1133                                     <scientific_name>Petromyzon marinus</scientific_name>\r
1134                                     <common_name>Sea lamprey</common_name>\r
1135                                     <rank>species</rank>\r
1136                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1137                                   </taxonomy>\r
1138                                 </clade>\r
1139                               </clade>\r
1140                               <clade>\r
1141                                 <name>Urochordata</name>\r
1142                                 <taxonomy>\r
1143                                   <id provider="uniprot">7712</id>\r
1144                                   <scientific_name>Urochordata</scientific_name>\r
1145                                   <rank>subphylum</rank>\r
1146                                 </taxonomy>\r
1147                                 <clade>\r
1148                                   <taxonomy>\r
1149                                     <id provider="uniprot">7718</id>\r
1150                                     <scientific_name>Ciona</scientific_name>\r
1151                                     <rank>genus</rank>\r
1152                                   </taxonomy>\r
1153                                   <clade>\r
1154                                     <taxonomy>\r
1155                                       <id provider="uniprot">7719</id>\r
1156                                       <code>CIOIN</code>\r
1157                                       <scientific_name>Ciona intestinalis</scientific_name>\r
1158                                       <common_name>Transparent sea squirt</common_name>\r
1159                                       <synonym>Ascidia intestinalis</synonym>\r
1160                                       <rank>species</rank>\r
1161                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1162                                     </taxonomy>\r
1163                                   </clade>\r
1164                                   <clade>\r
1165                                     <taxonomy>\r
1166                                       <id provider="uniprot">51511</id>\r
1167                                       <code>CIOSA</code>\r
1168                                       <scientific_name>Ciona savignyi</scientific_name>\r
1169                                       <common_name>Pacific transparent sea squirt</common_name>\r
1170                                       <rank>species</rank>\r
1171                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1172                                     </taxonomy>\r
1173                                   </clade>\r
1174                                 </clade>\r
1175                                 <clade>\r
1176                                   <taxonomy>\r
1177                                     <id provider="ncbi">34765</id>\r
1178                                     <code>OIKDI</code>\r
1179                                     <scientific_name>Oikopleura dioica</scientific_name>\r
1180                                     <common_name>Tunicate</common_name>\r
1181                                     <rank>species</rank>\r
1182                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1183                                   </taxonomy>\r
1184                                 </clade>\r
1185                               </clade>\r
1186                             </clade>\r
1187                             <clade>\r
1188                               <taxonomy>\r
1189                                 <id provider="uniprot">7739</id>\r
1190                                 <code>BRAFL</code>\r
1191                                 <scientific_name>Branchiostoma floridae</scientific_name>\r
1192                                 <common_name>Florida lancelet</common_name>\r
1193                                 <synonym>Amphioxus</synonym>\r
1194                                 <rank>species</rank>\r
1195                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>\r
1196                               </taxonomy>\r
1197                             </clade>\r
1198                           </clade>\r
1199                           <clade>\r
1200                             <name>Hemichordata &amp; Echinodermata</name>\r
1201                             <clade>\r
1202                               <taxonomy>\r
1203                                 <id provider="uniprot">10224</id>\r
1204                                 <code>SACKO</code>\r
1205                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1206                                 <authority>Agassiz, 1873</authority>\r
1207                                 <common_name>Acorn worm</common_name>\r
1208                                 <rank>species</rank>\r
1209                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>\r
1210                               </taxonomy>\r
1211                             </clade>\r
1212                             <clade>\r
1213                               <taxonomy>\r
1214                                 <id provider="uniprot">7668</id>\r
1215                                 <code>STRPU</code>\r
1216                                 <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1217                                 <common_name>Purple sea urchin</common_name>\r
1218                                 <rank>species</rank>\r
1219                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1220                               </taxonomy>\r
1221                             </clade>\r
1222                           </clade>\r
1223                         </clade>\r
1224                         <clade>\r
1225                           <taxonomy>\r
1226                             <id provider="uniprot">33317</id>\r
1227                             <scientific_name>Protostomia</scientific_name>\r
1228                           </taxonomy>\r
1229                           <clade>\r
1230                             <taxonomy>\r
1231                               <id provider="uniprot">1206794</id>\r
1232                               <scientific_name>Ecdysozoa</scientific_name>\r
1233                             </taxonomy>\r
1234                             <clade>\r
1235                               <taxonomy>\r
1236                                 <id provider="uniprot">6656</id>\r
1237                                 <scientific_name>Arthropoda</scientific_name>\r
1238                                 <rank>phylum</rank>\r
1239                               </taxonomy>\r
1240                               <clade>\r
1241                                 <taxonomy>\r
1242                                   <id provider="uniprot">197563</id>\r
1243                                   <scientific_name>Mandibulata</scientific_name>\r
1244                                 </taxonomy>\r
1245                                 <clade>\r
1246                                   <taxonomy>\r
1247                                     <id provider="uniprot">197562</id>\r
1248                                     <scientific_name>Pancrustacea</scientific_name>\r
1249                                   </taxonomy>\r
1250                                   <clade>\r
1251                                     <taxonomy>\r
1252                                       <id provider="uniprot">33340</id>\r
1253                                       <scientific_name>Neoptera</scientific_name>\r
1254                                       <rank>subclass</rank>\r
1255                                     </taxonomy>\r
1256                                     <clade>\r
1257                                       <taxonomy>\r
1258                                         <id provider="uniprot">33392</id>\r
1259                                         <scientific_name>Endopterygota</scientific_name>\r
1260                                         <rank>infraclass</rank>\r
1261                                       </taxonomy>\r
1262                                       <clade>\r
1263                                         <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>\r
1264                                         <clade>\r
1265                                           <name>Lepidoptera &amp; Diptera</name>\r
1266                                           <clade>\r
1267                                             <taxonomy>\r
1268                                               <id provider="uniprot">7147</id>\r
1269                                               <scientific_name>Diptera</scientific_name>\r
1270                                               <rank>order</rank>\r
1271                                             </taxonomy>\r
1272                                             <clade>\r
1273                                               <taxonomy>\r
1274                                                 <id provider="uniprot">7215</id>\r
1275                                                 <scientific_name>Drosophila</scientific_name>\r
1276                                                 <common_name>fruit flies</common_name>\r
1277                                                 <rank>genus</rank>\r
1278                                               </taxonomy>\r
1279                                               <reference doi="10.1534/genetics.111.126540">\r
1280                                                 <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
1281                                               </reference>\r
1282                                               <clade>\r
1283                                                 <taxonomy>\r
1284                                                   <id provider="uniprot">32341</id>\r
1285                                                   <scientific_name>Sophophora</scientific_name>\r
1286                                                   <rank>subgenus</rank>\r
1287                                                 </taxonomy>\r
1288                                                 <clade>\r
1289                                                   <name>melanogaster &amp; pseudoobscura subgroups</name>\r
1290                                                   <clade>\r
1291                                                     <taxonomy>\r
1292                                                       <id provider="uniprot">32346</id>\r
1293                                                       <scientific_name>melanogaster group</scientific_name>\r
1294                                                     </taxonomy>\r
1295                                                     <clade>\r
1296                                                       <taxonomy>\r
1297                                                         <id provider="uniprot">32351</id>\r
1298                                                         <scientific_name>melanogaster subgroup</scientific_name>\r
1299                                                       </taxonomy>\r
1300                                                       <clade>\r
1301                                                         <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
1302                                                         <clade>\r
1303                                                           <name>DROSE &amp; DROSI &amp; DROME</name>\r
1304                                                           <clade>\r
1305                                                             <name>DROSE &amp; DROSI</name>\r
1306                                                             <clade>\r
1307                                                               <taxonomy>\r
1308                                                                 <id provider="uniprot">7238</id>\r
1309                                                                 <code>DROSE</code>\r
1310                                                                 <scientific_name>Drosophila sechellia</scientific_name>\r
1311                                                                 <common_name>Fruit fly</common_name>\r
1312                                                                 <rank>species</rank>\r
1313                                                               </taxonomy>\r
1314                                                             </clade>\r
1315                                                             <clade>\r
1316                                                               <taxonomy>\r
1317                                                                 <id provider="uniprot">7240</id>\r
1318                                                                 <code>DROSI</code>\r
1319                                                                 <scientific_name>Drosophila simulans</scientific_name>\r
1320                                                                 <common_name>Fruit fly</common_name>\r
1321                                                                 <rank>species</rank>\r
1322                                                               </taxonomy>\r
1323                                                             </clade>\r
1324                                                           </clade>\r
1325                                                           <clade>\r
1326                                                             <taxonomy>\r
1327                                                               <id provider="uniprot">7227</id>\r
1328                                                               <code>DROME</code>\r
1329                                                               <scientific_name>Drosophila melanogaster</scientific_name>\r
1330                                                               <common_name>Fruit fly</common_name>\r
1331                                                               <rank>species</rank>\r
1332                                                               <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
1333                                                             </taxonomy>\r
1334                                                           </clade>\r
1335                                                         </clade>\r
1336                                                         <clade>\r
1337                                                           <taxonomy>\r
1338                                                             <id provider="uniprot">7245</id>\r
1339                                                             <code>DROYA</code>\r
1340                                                             <scientific_name>Drosophila yakuba</scientific_name>\r
1341                                                             <common_name>Fruit fly</common_name>\r
1342                                                             <rank>species</rank>\r
1343                                                           </taxonomy>\r
1344                                                         </clade>\r
1345                                                       </clade>\r
1346                                                       <clade>\r
1347                                                         <taxonomy>\r
1348                                                           <id provider="uniprot">7220</id>\r
1349                                                           <code>DROER</code>\r
1350                                                           <scientific_name>Drosophila erecta</scientific_name>\r
1351                                                           <common_name>Fruit fly</common_name>\r
1352                                                           <rank>species</rank>\r
1353                                                         </taxonomy>\r
1354                                                       </clade>\r
1355                                                     </clade>\r
1356                                                     <clade>\r
1357                                                       <taxonomy>\r
1358                                                         <id provider="uniprot">7217</id>\r
1359                                                         <code>DROAN</code>\r
1360                                                         <scientific_name>Drosophila ananassae</scientific_name>\r
1361                                                         <common_name>Fruit fly</common_name>\r
1362                                                         <rank>species</rank>\r
1363                                                       </taxonomy>\r
1364                                                     </clade>\r
1365                                                   </clade>\r
1366                                                   <clade>\r
1367                                                     <taxonomy>\r
1368                                                       <id provider="uniprot">32358</id>\r
1369                                                       <scientific_name>pseudoobscura subgroup</scientific_name>\r
1370                                                     </taxonomy>\r
1371                                                     <clade>\r
1372                                                       <taxonomy>\r
1373                                                         <id provider="uniprot">7234</id>\r
1374                                                         <code>DROPE</code>\r
1375                                                         <scientific_name>Drosophila persimilis</scientific_name>\r
1376                                                         <common_name>Fruit fly</common_name>\r
1377                                                         <rank>species</rank>\r
1378                                                       </taxonomy>\r
1379                                                     </clade>\r
1380                                                     <clade>\r
1381                                                       <taxonomy>\r
1382                                                         <id provider="uniprot">46245</id>\r
1383                                                         <code>DROPS</code>\r
1384                                                         <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1385                                                         <common_name>Fruit fly</common_name>\r
1386                                                         <rank>subspecies</rank>\r
1387                                                         <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
1388                                                       </taxonomy>\r
1389                                                     </clade>\r
1390                                                   </clade>\r
1391                                                 </clade>\r
1392                                                 <clade>\r
1393                                                   <taxonomy>\r
1394                                                     <id provider="uniprot">7260</id>\r
1395                                                     <code>DROWI</code>\r
1396                                                     <scientific_name>Drosophila willistoni</scientific_name>\r
1397                                                     <common_name>Fruit fly</common_name>\r
1398                                                     <rank>species</rank>\r
1399                                                   </taxonomy>\r
1400                                                 </clade>\r
1401                                               </clade>\r
1402                                               <clade>\r
1403                                                 <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
1404                                                 <clade>\r
1405                                                   <name>Drosophila subgenus</name>\r
1406                                                   <clade>\r
1407                                                     <taxonomy>\r
1408                                                       <id provider="uniprot">7230</id>\r
1409                                                       <code>DROMO</code>\r
1410                                                       <scientific_name>Drosophila mojavensis</scientific_name>\r
1411                                                       <common_name>Fruit fly</common_name>\r
1412                                                       <rank>species</rank>\r
1413                                                     </taxonomy>\r
1414                                                   </clade>\r
1415                                                   <clade>\r
1416                                                     <taxonomy>\r
1417                                                       <id provider="uniprot">7244</id>\r
1418                                                       <code>DROVI</code>\r
1419                                                       <scientific_name>Drosophila virilis</scientific_name>\r
1420                                                       <common_name>Fruit fly</common_name>\r
1421                                                       <rank>species</rank>\r
1422                                                     </taxonomy>\r
1423                                                   </clade>\r
1424                                                 </clade>\r
1425                                                 <clade>\r
1426                                                   <taxonomy>\r
1427                                                     <id provider="uniprot">7222</id>\r
1428                                                     <code>DROGR</code>\r
1429                                                     <scientific_name>Drosophila grimshawi</scientific_name>\r
1430                                                     <common_name>Fruit fly</common_name>\r
1431                                                     <synonym>Idiomyia grimshawi</synonym>\r
1432                                                     <rank>species</rank>\r
1433                                                     <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
1434                                                   </taxonomy>\r
1435                                                 </clade>\r
1436                                               </clade>\r
1437                                             </clade>\r
1438                                             <clade>\r
1439                                               <taxonomy>\r
1440                                                 <id provider="uniprot">7157</id>\r
1441                                                 <scientific_name>Culicidae</scientific_name>\r
1442                                                 <common_name>mosquitos</common_name>\r
1443                                                 <rank>family</rank>\r
1444                                               </taxonomy>\r
1445                                               <clade>\r
1446                                                 <taxonomy>\r
1447                                                   <id provider="uniprot">7159</id>\r
1448                                                   <code>AEDAE</code>\r
1449                                                   <scientific_name>Aedes aegypti</scientific_name>\r
1450                                                   <common_name>Yellowfever mosquito</common_name>\r
1451                                                   <synonym>Culex aegypti</synonym>\r
1452                                                   <rank>species</rank>\r
1453                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1454                                                 </taxonomy>\r
1455                                               </clade>\r
1456                                               <clade>\r
1457                                                 <taxonomy>\r
1458                                                   <id provider="uniprot">7165</id>\r
1459                                                   <code>ANOGA</code>\r
1460                                                   <scientific_name>Anopheles gambiae</scientific_name>\r
1461                                                   <common_name>African malaria mosquito</common_name>\r
1462                                                   <rank>species</rank>\r
1463                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1464                                                 </taxonomy>\r
1465                                               </clade>\r
1466                                               <clade>\r
1467                                                 <taxonomy>\r
1468                                                   <id provider="uniprot">7175</id>\r
1469                                                   <code>CULPI</code>\r
1470                                                   <scientific_name>Culex pipiens</scientific_name>\r
1471                                                   <common_name>House mosquito</common_name>\r
1472                                                   <rank>species</rank>\r
1473                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>\r
1474                                                 </taxonomy>\r
1475                                               </clade>\r
1476                                             </clade>\r
1477                                           </clade>\r
1478                                           <clade>\r
1479                                             <taxonomy>\r
1480                                               <id provider="uniprot">7091</id>\r
1481                                               <code>BOMMO</code>\r
1482                                               <scientific_name>Bombyx mori</scientific_name>\r
1483                                               <common_name>Silk moth</common_name>\r
1484                                               <rank>species</rank>\r
1485                                               <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>\r
1486                                             </taxonomy>\r
1487                                           </clade>\r
1488                                         </clade>\r
1489                                         <clade>\r
1490                                           <taxonomy>\r
1491                                             <id provider="uniprot">7400</id>\r
1492                                             <scientific_name>Apocrita</scientific_name>\r
1493                                             <common_name>wasps, ants and bees</common_name>\r
1494                                           </taxonomy>\r
1495                                           <clade>\r
1496                                             <taxonomy>\r
1497                                               <id provider="uniprot">7434</id>\r
1498                                               <scientific_name>Aculeata</scientific_name>\r
1499                                               <rank>suborder</rank>\r
1500                                             </taxonomy>\r
1501                                             <clade>\r
1502                                               <taxonomy>\r
1503                                                 <id provider="uniprot">7460</id>\r
1504                                                 <code>APIME</code>\r
1505                                                 <scientific_name>Apis mellifera</scientific_name>\r
1506                                                 <common_name>Honeybee</common_name>\r
1507                                                 <rank>species</rank>\r
1508                                                 <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
1509                                               </taxonomy>\r
1510                                             </clade>\r
1511                                             <clade>\r
1512                                               <taxonomy>\r
1513                                                 <id provider="uniprot">12957</id>\r
1514                                                 <code>ATTCE</code>\r
1515                                                 <scientific_name>Atta cephalotes</scientific_name>\r
1516                                                 <authority>Linnaeus, 1758</authority>\r
1517                                                 <common_name>Leafcutter ant</common_name>\r
1518                                                 <rank>species</rank>\r
1519                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
1520                                               </taxonomy>\r
1521                                             </clade>\r
1522                                           </clade>\r
1523                                           <clade>\r
1524                                             <taxonomy>\r
1525                                               <id provider="uniprot">7425</id>\r
1526                                               <code>NASVI</code>\r
1527                                               <scientific_name>Nasonia vitripennis</scientific_name>\r
1528                                               <common_name>Parasitic wasp</common_name>\r
1529                                               <rank>species</rank>\r
1530                                               <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
1531                                             </taxonomy>\r
1532                                           </clade>\r
1533                                         </clade>\r
1534                                       </clade>\r
1535                                       <clade>\r
1536                                         <taxonomy>\r
1537                                           <id provider="uniprot">7070</id>\r
1538                                           <code>TRICA</code>\r
1539                                           <scientific_name>Tribolium castaneum</scientific_name>\r
1540                                           <common_name>Red flour beetle</common_name>\r
1541                                           <rank>species</rank>\r
1542                                           <uri>http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg</uri>\r
1543                                         </taxonomy>\r
1544                                       </clade>\r
1545                                     </clade>\r
1546                                     <clade>\r
1547                                       <taxonomy>\r
1548                                         <id provider="uniprot">33342</id>\r
1549                                         <scientific_name>Paraneoptera</scientific_name>\r
1550                                         <rank>infraclass</rank>\r
1551                                       </taxonomy>\r
1552                                       <clade>\r
1553                                         <taxonomy>\r
1554                                           <id provider="uniprot">7524</id>\r
1555                                           <scientific_name>Hemiptera</scientific_name>\r
1556                                           <rank>order</rank>\r
1557                                         </taxonomy>\r
1558                                         <clade>\r
1559                                           <taxonomy>\r
1560                                             <id provider="uniprot">7029</id>\r
1561                                             <code>ACYPI</code>\r
1562                                             <scientific_name>Acyrthosiphon pisum</scientific_name>\r
1563                                             <common_name>Pea aphid</common_name>\r
1564                                             <rank>species</rank>\r
1565                                             <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
1566                                           </taxonomy>\r
1567                                         </clade>\r
1568                                         <clade>\r
1569                                           <taxonomy>\r
1570                                             <id provider="uniprot">13249</id>\r
1571                                             <code>RHOPR</code>\r
1572                                             <scientific_name>Rhodnius prolixus</scientific_name>\r
1573                                             <common_name>Triatomid bug</common_name>\r
1574                                             <rank>species</rank>\r
1575                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
1576                                           </taxonomy>\r
1577                                         </clade>\r
1578                                       </clade>\r
1579                                       <clade>\r
1580                                         <taxonomy>\r
1581                                           <id provider="uniprot">121224</id>\r
1582                                           <code>PEDHC</code>\r
1583                                           <scientific_name>Pediculus humanus subsp. corporis</scientific_name>\r
1584                                           <common_name>Body louse</common_name>\r
1585                                           <rank>subspecies</rank>\r
1586                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>\r
1587                                         </taxonomy>\r
1588                                       </clade>\r
1589                                     </clade>\r
1590                                   </clade>\r
1591                                   <clade>\r
1592                                     <taxonomy>\r
1593                                       <id provider="uniprot">6658</id>\r
1594                                       <scientific_name>Branchiopoda</scientific_name>\r
1595                                       <rank>class</rank>\r
1596                                     </taxonomy>\r
1597                                     <clade>\r
1598                                       <taxonomy>\r
1599                                         <id provider="uniprot">6661</id>\r
1600                                         <code>ARTSF</code>\r
1601                                         <scientific_name>Artemia franciscana</scientific_name>\r
1602                                         <common_name>Brine shrimp</common_name>\r
1603                                         <synonym>Artemia sanfranciscana</synonym>\r
1604                                         <rank>species</rank>\r
1605                                         <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>\r
1606                                       </taxonomy>\r
1607                                     </clade>\r
1608                                     <clade>\r
1609                                       <taxonomy>\r
1610                                         <id provider="uniprot">6669</id>\r
1611                                         <code>DAPPU</code>\r
1612                                         <scientific_name>Daphnia pulex</scientific_name>\r
1613                                         <common_name>Water flea</common_name>\r
1614                                         <rank>species</rank>\r
1615                                         <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
1616                                       </taxonomy>\r
1617                                     </clade>\r
1618                                   </clade>\r
1619                                 </clade>\r
1620                                 <clade>\r
1621                                   <taxonomy>\r
1622                                     <id provider="uniprot">61985</id>\r
1623                                     <scientific_name>Myriapoda</scientific_name>\r
1624                                     <rank>subphylum</rank>\r
1625                                   </taxonomy>\r
1626                                   <clade>\r
1627                                     <taxonomy>\r
1628                                       <id provider="uniprot">7553</id>\r
1629                                       <scientific_name>Diplopoda</scientific_name>\r
1630                                       <common_name>millipedes</common_name>\r
1631                                       <rank>class</rank>\r
1632                                     </taxonomy>\r
1633                                     <clade>\r
1634                                       <taxonomy>\r
1635                                         <id provider="uniprot">118561</id>\r
1636                                         <scientific_name>Helminthomorpha</scientific_name>\r
1637                                         <rank>subclass</rank>\r
1638                                       </taxonomy>\r
1639                                       <clade>\r
1640                                         <taxonomy>\r
1641                                           <id provider="uniprot">364406</id>\r
1642                                           <code>ANTGC</code>\r
1643                                           <scientific_name>Antrokoreana gracilipes</scientific_name>\r
1644                                           <common_name>Troglobite millipede</common_name>\r
1645                                           <rank>species</rank>\r
1646                                           <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>\r
1647                                         </taxonomy>\r
1648                                       </clade>\r
1649                                       <clade>\r
1650                                         <taxonomy>\r
1651                                           <id provider="uniprot">174156</id>\r
1652                                           <code>NARAN</code>\r
1653                                           <scientific_name>Narceus annularis</scientific_name>\r
1654                                           <common_name>Millipede</common_name>\r
1655                                           <rank>species</rank>\r
1656                                           <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
1657                                         </taxonomy>\r
1658                                       </clade>\r
1659                                     </clade>\r
1660                                     <clade>\r
1661                                       <taxonomy>\r
1662                                         <id provider="uniprot">52428</id>\r
1663                                         <scientific_name>Polyxenus lagurus</scientific_name>\r
1664                                         <common_name>bristly millipede</common_name>\r
1665                                         <rank>species</rank>\r
1666                                         <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
1667                                       </taxonomy>\r
1668                                     </clade>\r
1669                                   </clade>\r
1670                                   <clade>\r
1671                                     <taxonomy>\r
1672                                       <id provider="uniprot">7540</id>\r
1673                                       <scientific_name>Chilopoda</scientific_name>\r
1674                                       <common_name>centipedes</common_name>\r
1675                                       <rank>class</rank>\r
1676                                     </taxonomy>\r
1677                                     <clade>\r
1678                                       <taxonomy>\r
1679                                         <id provider="uniprot">29022</id>\r
1680                                         <code>SCUCO</code>\r
1681                                         <scientific_name>Scutigera coleoptrata</scientific_name>\r
1682                                         <common_name>House centipede</common_name>\r
1683                                         <rank>species</rank>\r
1684                                         <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
1685                                       </taxonomy>\r
1686                                     </clade>\r
1687                                     <clade>\r
1688                                       <taxonomy>\r
1689                                         <id provider="uniprot">126957</id>\r
1690                                         <code>STRMM</code>\r
1691                                         <scientific_name>Strigamia maritima</scientific_name>\r
1692                                         <common_name>European centipede</common_name>\r
1693                                         <synonym>Geophilus maritimus</synonym>\r
1694                                         <rank>species</rank>\r
1695                                         <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
1696                                       </taxonomy>\r
1697                                     </clade>\r
1698                                   </clade>\r
1699                                 </clade>\r
1700                               </clade>\r
1701                               <clade>\r
1702                                 <taxonomy>\r
1703                                   <id provider="uniprot">6945</id>\r
1704                                   <code>IXOSC</code>\r
1705                                   <scientific_name>Ixodes scapularis</scientific_name>\r
1706                                   <common_name>Black-legged tick</common_name>\r
1707                                   <synonym>Deer tick</synonym>\r
1708                                   <rank>species</rank>\r
1709                                   <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
1710                                 </taxonomy>\r
1711                               </clade>\r
1712                             </clade>\r
1713                             <clade>\r
1714                               <taxonomy>\r
1715                                 <id provider="uniprot">119089</id>\r
1716                                 <scientific_name>Chromadorea</scientific_name>\r
1717                                 <rank>class</rank>\r
1718                               </taxonomy>\r
1719                               <reference doi="10.1038/32160">\r
1720                               </reference>\r
1721                               <clade>\r
1722                                 <name>nematode Clade V</name>\r
1723                                 <clade>\r
1724                                   <taxonomy>\r
1725                                     <id provider="uniprot">6237</id>\r
1726                                     <scientific_name>Caenorhabditis</scientific_name>\r
1727                                     <rank>genus</rank>\r
1728                                   </taxonomy>\r
1729                                   <reference doi="10.1073/pnas.0403094101">\r
1730                                     <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>\r
1731                                   </reference>\r
1732                                   <clade>\r
1733                                     <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>\r
1734                                     <clade>\r
1735                                       <name>CAEBR &amp; CAERE &amp; CAEBE</name>\r
1736                                       <clade>\r
1737                                         <name>CAEBR &amp; CAERE</name>\r
1738                                         <clade>\r
1739                                           <taxonomy>\r
1740                                             <id provider="uniprot">6238</id>\r
1741                                             <code>CAEBR</code>\r
1742                                             <scientific_name>Caenorhabditis briggsae</scientific_name>\r
1743                                             <rank>species</rank>\r
1744                                             <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>\r
1745                                           </taxonomy>\r
1746                                         </clade>\r
1747                                         <clade>\r
1748                                           <taxonomy>\r
1749                                             <id provider="uniprot">31234</id>\r
1750                                             <code>CAERE</code>\r
1751                                             <scientific_name>Caenorhabditis remanei</scientific_name>\r
1752                                             <synonym>Caenorhabditis vulgaris</synonym>\r
1753                                             <rank>species</rank>\r
1754                                             <uri>http://lemur.amu.edu.pl/share/php/mirnest/species_images/Caenorhabditis_remanei.jpg</uri>\r
1755                                           </taxonomy>\r
1756                                         </clade>\r
1757                                       </clade>\r
1758                                       <clade>\r
1759                                         <taxonomy>\r
1760                                           <id provider="uniprot">135651</id>\r
1761                                           <code>CAEBE</code>\r
1762                                           <scientific_name>Caenorhabditis brenneri</scientific_name>\r
1763                                           <common_name>Nematode worm</common_name>\r
1764                                           <synonym>Caenorhabditis CB5161</synonym>\r
1765                                           <rank>species</rank>\r
1766                                         </taxonomy>\r
1767                                       </clade>\r
1768                                     </clade>\r
1769                                     <clade>\r
1770                                       <taxonomy>\r
1771                                         <id provider="uniprot">6239</id>\r
1772                                         <code>CAEEL</code>\r
1773                                         <scientific_name>Caenorhabditis elegans</scientific_name>\r
1774                                         <rank>species</rank>\r
1775                                         <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>\r
1776                                       </taxonomy>\r
1777                                     </clade>\r
1778                                   </clade>\r
1779                                   <clade>\r
1780                                     <taxonomy>\r
1781                                       <id provider="uniprot">281687</id>\r
1782                                       <code>CAEJA</code>\r
1783                                       <scientific_name>Caenorhabditis japonica</scientific_name>\r
1784                                       <rank>species</rank>\r
1785                                     </taxonomy>\r
1786                                   </clade>\r
1787                                 </clade>\r
1788                                 <clade>\r
1789                                   <taxonomy>\r
1790                                     <id provider="uniprot">54126</id>\r
1791                                     <code>PRIPA</code>\r
1792                                     <scientific_name>Pristionchus pacificus</scientific_name>\r
1793                                     <common_name>Parasitic nematode</common_name>\r
1794                                     <rank>species</rank>\r
1795                                     <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>\r
1796                                   </taxonomy>\r
1797                                 </clade>\r
1798                               </clade>\r
1799                               <clade>\r
1800                                 <taxonomy>\r
1801                                   <id provider="uniprot">6279</id>\r
1802                                   <code>BRUMA</code>\r
1803                                   <scientific_name>Brugia malayi</scientific_name>\r
1804                                   <common_name>Filarial nematode worm</common_name>\r
1805                                   <rank>species</rank>\r
1806                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>\r
1807                                 </taxonomy>\r
1808                               </clade>\r
1809                             </clade>\r
1810                           </clade>\r
1811                           <clade>\r
1812                             <taxonomy>\r
1813                               <id provider="uniprot">1206795</id>\r
1814                               <scientific_name>Lophotrochozoa</scientific_name>\r
1815                             </taxonomy>\r
1816                             <clade>\r
1817                               <name>Annelida &amp; Mollusca</name>\r
1818                               <clade>\r
1819                                 <taxonomy>\r
1820                                   <id provider="uniprot">6447</id>\r
1821                                   <scientific_name>Mollusca</scientific_name>\r
1822                                   <rank>phylum</rank>\r
1823                                 </taxonomy>\r
1824                                 <clade>\r
1825                                   <taxonomy>\r
1826                                     <id provider="uniprot">6448</id>\r
1827                                     <scientific_name>Gastropoda</scientific_name>\r
1828                                     <rank>class</rank>\r
1829                                   </taxonomy>\r
1830                                   <clade>\r
1831                                     <taxonomy>\r
1832                                       <id provider="uniprot">6500</id>\r
1833                                       <code>APLCA</code>\r
1834                                       <scientific_name>Aplysia californica</scientific_name>\r
1835                                       <common_name>California sea hare</common_name>\r
1836                                       <rank>species</rank>\r
1837                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>\r
1838                                     </taxonomy>\r
1839                                   </clade>\r
1840                                   <clade>\r
1841                                     <taxonomy>\r
1842                                       <id provider="uniprot">225164</id>\r
1843                                       <code>LOTGI</code>\r
1844                                       <scientific_name>Lottia gigantea</scientific_name>\r
1845                                       <common_name>Owl limpet</common_name>\r
1846                                       <rank>species</rank>\r
1847                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>\r
1848                                     </taxonomy>\r
1849                                   </clade>\r
1850                                 </clade>\r
1851                                 <clade>\r
1852                                   <taxonomy>\r
1853                                     <id provider="uniprot">6545</id>\r
1854                                     <scientific_name>Pteriomorphia</scientific_name>\r
1855                                     <synonym>Pteriomorpha</synonym>\r
1856                                     <rank>subclass</rank>\r
1857                                   </taxonomy>\r
1858                                   <clade>\r
1859                                     <taxonomy>\r
1860                                       <id provider="uniprot">29159</id>\r
1861                                       <code>CRAGI</code>\r
1862                                       <scientific_name>Crassostrea gigas</scientific_name>\r
1863                                       <authority>Thunberg, 1793</authority>\r
1864                                       <common_name>Pacific oyster</common_name>\r
1865                                       <synonym>Crassotrea gigas</synonym>\r
1866                                       <synonym>Crassostrea angulata</synonym>\r
1867                                       <synonym>Ostrea gigas</synonym>\r
1868                                       <rank>species</rank>\r
1869                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>\r
1870                                     </taxonomy>\r
1871                                   </clade>\r
1872                                   <clade>\r
1873                                     <taxonomy>\r
1874                                       <id provider="uniprot">50426</id>\r
1875                                       <code>PINFU</code>\r
1876                                       <scientific_name>Pinctada fucata</scientific_name>\r
1877                                       <common_name>Pearl oyster</common_name>\r
1878                                       <rank>species</rank>\r
1879                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>\r
1880                                     </taxonomy>\r
1881                                   </clade>\r
1882                                 </clade>\r
1883                               </clade>\r
1884                               <clade>\r
1885                                 <taxonomy>\r
1886                                   <id provider="uniprot">6340</id>\r
1887                                   <scientific_name>Annelida</scientific_name>\r
1888                                   <rank>phylum</rank>\r
1889                                 </taxonomy>\r
1890                                 <clade>\r
1891                                   <taxonomy>\r
1892                                     <id provider="uniprot">283909</id>\r
1893                                     <code>CTEXX</code>\r
1894                                     <scientific_name>Capitella teleta</scientific_name>\r
1895                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>\r
1896                                     <synonym>Capitella sp. I</synonym>\r
1897                                     <rank>species</rank>\r
1898                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>\r
1899                                   </taxonomy>\r
1900                                 </clade>\r
1901                                 <clade>\r
1902                                   <taxonomy>\r
1903                                     <id provider="uniprot">6412</id>\r
1904                                     <code>HELRO</code>\r
1905                                     <scientific_name>Helobdella robusta</scientific_name>\r
1906                                     <common_name>Californian leech</common_name>\r
1907                                     <rank>species</rank>\r
1908                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>\r
1909                                   </taxonomy>\r
1910                                 </clade>\r
1911                               </clade>\r
1912                             </clade>\r
1913                             <clade>\r
1914                               <taxonomy>\r
1915                                 <id provider="uniprot">6157</id>\r
1916                                 <scientific_name>Platyhelminthes</scientific_name>\r
1917                                 <rank>phylum</rank>\r
1918                               </taxonomy>\r
1919                               <clade>\r
1920                                 <taxonomy>\r
1921                                   <id provider="uniprot">6183</id>\r
1922                                   <code>SCHMA</code>\r
1923                                   <scientific_name>Schistosoma mansoni</scientific_name>\r
1924                                   <common_name>Blood fluke</common_name>\r
1925                                   <rank>species</rank>\r
1926                                   <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>\r
1927                                 </taxonomy>\r
1928                               </clade>\r
1929                               <clade>\r
1930                                 <taxonomy>\r
1931                                   <id provider="uniprot">79327</id>\r
1932                                   <code>SCHMD</code>\r
1933                                   <scientific_name>Schmidtea mediterranea</scientific_name>\r
1934                                   <common_name>Freshwater planarian flatworm</common_name>\r
1935                                   <rank>species</rank>\r
1936                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>\r
1937                                 </taxonomy>\r
1938                               </clade>\r
1939                             </clade>\r
1940                           </clade>\r
1941                         </clade>\r
1942                       </clade>\r
1943                       <clade>\r
1944                         <name>Cnidaria</name>\r
1945                         <taxonomy>\r
1946                           <id provider="uniprot">6073</id>\r
1947                           <scientific_name>Cnidaria</scientific_name>\r
1948                           <rank>phylum</rank>\r
1949                         </taxonomy>\r
1950                         <clade>\r
1951                           <taxonomy>\r
1952                             <id provider="uniprot">6102</id>\r
1953                             <scientific_name>Hexacorallia</scientific_name>\r
1954                             <synonym>Ceriantipatharia</synonym>\r
1955                             <synonym>Zoantharia</synonym>\r
1956                             <rank>subclass</rank>\r
1957                           </taxonomy>\r
1958                           <clade>\r
1959                             <taxonomy>\r
1960                               <id provider="uniprot">70779</id>\r
1961                               <code>ACRDI</code>\r
1962                               <scientific_name>Acropora digitifera</scientific_name>\r
1963                               <common_name>Staghorn coral</common_name>\r
1964                               <rank>species</rank>\r
1965                               <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>\r
1966                             </taxonomy>\r
1967                           </clade>\r
1968                           <clade>\r
1969                             <taxonomy>\r
1970                               <id provider="uniprot">45351</id>\r
1971                               <code>NEMVE</code>\r
1972                               <scientific_name>Nematostella vectensis</scientific_name>\r
1973                               <common_name>Starlet sea anemone</common_name>\r
1974                               <rank>species</rank>\r
1975                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>\r
1976                             </taxonomy>\r
1977                           </clade>\r
1978                         </clade>\r
1979                         <clade>\r
1980                           <taxonomy>\r
1981                             <id provider="uniprot">6085</id>\r
1982                             <code>HMAXX</code>\r
1983                             <scientific_name>Hydra magnipapillata</scientific_name>\r
1984                             <authority>Ito, 1947</authority>\r
1985                             <rank>species</rank>\r
1986                             <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>\r
1987                           </taxonomy>\r
1988                         </clade>\r
1989                       </clade>\r
1990                     </clade>\r
1991                     <clade>\r
1992                       <taxonomy>\r
1993                         <id provider="uniprot">10228</id>\r
1994                         <code>TRIAD</code>\r
1995                         <scientific_name>Trichoplax adhaerens</scientific_name>\r
1996                         <synonym>Trichoplax reptans</synonym>\r
1997                         <rank>species</rank>\r
1998                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>\r
1999                       </taxonomy>\r
2000                       <reference doi="10.1073/pnas.0602076103">\r
2001                       </reference>\r
2002                     </clade>\r
2003                   </clade>\r
2004                   <clade>\r
2005                     <taxonomy>\r
2006                       <id provider="uniprot">27923</id>\r
2007                       <code>MNELE</code>\r
2008                       <scientific_name>Mnemiopsis leidyi</scientific_name>\r
2009                       <authority>A. gassiz, 1865</authority>\r
2010                       <common_name>Sea walnut</common_name>\r
2011                       <synonym>Warty comb jellyfish</synonym>\r
2012                       <rank>species</rank>\r
2013                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>\r
2014                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>\r
2015                     </taxonomy>\r
2016                   </clade>\r
2017                   <clade>\r
2018                     <taxonomy>\r
2019                       <id provider="uniprot">400682</id>\r
2020                       <code>AMPQE</code>\r
2021                       <scientific_name>Amphimedon queenslandica</scientific_name>\r
2022                       <authority>Hooper &amp; Van Soest, 2006</authority>\r
2023                       <common_name>Sponge</common_name>\r
2024                       <synonym>Reniera sp. JGI-2005</synonym>\r
2025                       <rank>species</rank>\r
2026                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>\r
2027                     </taxonomy>\r
2028                   </clade>\r
2029                 </clade>\r
2030                 <clade>\r
2031                   <taxonomy>\r
2032                     <id provider="uniprot">81524</id>\r
2033                     <scientific_name>Codonosigidae</scientific_name>\r
2034                     <rank>family</rank>\r
2035                   </taxonomy>\r
2036                   <clade>\r
2037                     <taxonomy>\r
2038                       <id provider="uniprot">81824</id>\r
2039                       <code>MONBE</code>\r
2040                       <scientific_name>Monosiga brevicollis</scientific_name>\r
2041                       <common_name>Choanoflagellate</common_name>\r
2042                       <rank>species</rank>\r
2043                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>\r
2044                     </taxonomy>\r
2045                   </clade>\r
2046                   <clade>\r
2047                     <taxonomy>\r
2048                       <id provider="uniprot">946362</id>\r
2049                       <code>SALS5</code>\r
2050                       <scientific_name>Salpingoeca rosetta</scientific_name>\r
2051                       <synonym>Proterospongia sp. ATCC 50818</synonym>\r
2052                       <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
2053                       <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>\r
2054                       <rank>species</rank>\r
2055                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>\r
2056                     </taxonomy>\r
2057                   </clade>\r
2058                 </clade>\r
2059               </clade>\r
2060               <clade>\r
2061                 <name>Ichthyophonida &amp; Filasterea</name>\r
2062                 <clade>\r
2063                   <taxonomy>\r
2064                     <id provider="uniprot">198625</id>\r
2065                     <scientific_name>Ichthyophonida</scientific_name>\r
2066                     <rank>order</rank>\r
2067                   </taxonomy>\r
2068                   <clade>\r
2069                     <taxonomy>\r
2070                       <id provider="uniprot">4881</id>\r
2071                       <code>AMOPA</code>\r
2072                       <scientific_name>Amoebidium parasiticum</scientific_name>\r
2073                       <rank>species</rank>\r
2074                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>\r
2075                     </taxonomy>\r
2076                   </clade>\r
2077                   <clade>\r
2078                     <taxonomy>\r
2079                       <id provider="uniprot">72019</id>\r
2080                       <code>SARXX</code>\r
2081                       <scientific_name>Sphaeroforma arctica</scientific_name>\r
2082                       <rank>species</rank>\r
2083                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
2084                     </taxonomy>\r
2085                   </clade>\r
2086                 </clade>\r
2087                 <clade>\r
2088                   <taxonomy>\r
2089                     <scientific_name>Filasterea</scientific_name>\r
2090                   </taxonomy>\r
2091                   <reference doi="10.1371/journal.pone.0002098">\r
2092                   </reference>\r
2093                   <reference>\r
2094                   </reference>\r
2095                   <clade>\r
2096                     <taxonomy>\r
2097                       <id provider="uniprot">595528</id>\r
2098                       <code>CAPO3</code>\r
2099                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>\r
2100                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>\r
2101                     </taxonomy>\r
2102                   </clade>\r
2103                   <clade>\r
2104                     <taxonomy>\r
2105                       <id provider="uniprot">134558</id>\r
2106                       <scientific_name>Ministeria vibrans</scientific_name>\r
2107                       <rank>species</rank>\r
2108                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>\r
2109                     </taxonomy>\r
2110                   </clade>\r
2111                 </clade>\r
2112               </clade>\r
2113             </clade>\r
2114             <clade>\r
2115               <taxonomy>\r
2116                 <scientific_name>Holomycota</scientific_name>\r
2117                 <synonym>Nucletmycea</synonym>\r
2118               </taxonomy>\r
2119               <clade>\r
2120                 <taxonomy>\r
2121                   <id provider="uniprot">4751</id>\r
2122                   <scientific_name>Fungi</scientific_name>\r
2123                   <rank>kingdom</rank>\r
2124                 </taxonomy>\r
2125                 <clade>\r
2126                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
2127                   <clade>\r
2128                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
2129                     <clade>\r
2130                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
2131                       <clade>\r
2132                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
2133                         <clade>\r
2134                           <name>Dikarya &amp; Mucoromycotina</name>\r
2135                           <clade>\r
2136                             <taxonomy>\r
2137                               <id provider="uniprot">451864</id>\r
2138                               <scientific_name>Dikarya</scientific_name>\r
2139                               <rank>subkingdom</rank>\r
2140                             </taxonomy>\r
2141                             <reference doi="10.1038/nature05110">\r
2142                             </reference>\r
2143                             <reference>\r
2144                             </reference>\r
2145                             <clade>\r
2146                               <taxonomy>\r
2147                                 <id provider="uniprot">4890</id>\r
2148                                 <scientific_name>Ascomycota</scientific_name>\r
2149                                 <rank>phylum</rank>\r
2150                               </taxonomy>\r
2151                               <clade>\r
2152                                 <name>Pezizomycotina &amp; Saccharomycetales</name>\r
2153                                 <clade>\r
2154                                   <taxonomy>\r
2155                                     <id provider="uniprot">147538</id>\r
2156                                     <scientific_name>Pezizomycotina</scientific_name>\r
2157                                     <synonym>Euascomycota</synonym>\r
2158                                     <rank>subphylum</rank>\r
2159                                   </taxonomy>\r
2160                                   <reference doi="0.3852/mycologia.98.6.1018">\r
2161                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
2162                                   </reference>\r
2163                                   <reference>\r
2164                                   </reference>\r
2165                                   <clade>\r
2166                                     <taxonomy>\r
2167                                       <id provider="uniprot">716546</id>\r
2168                                       <scientific_name>Leotiomyceta</scientific_name>\r
2169                                     </taxonomy>\r
2170                                     <clade>\r
2171                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
2172                                       <clade>\r
2173                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
2174                                         <clade>\r
2175                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
2176                                           <clade>\r
2177                                             <taxonomy>\r
2178                                               <id provider="uniprot">715989</id>\r
2179                                               <scientific_name>Sordariomyceta</scientific_name>\r
2180                                             </taxonomy>\r
2181                                             <clade>\r
2182                                               <taxonomy>\r
2183                                                 <id provider="uniprot">147550</id>\r
2184                                                 <scientific_name>Sordariomycetes</scientific_name>\r
2185                                                 <rank>class</rank>\r
2186                                               </taxonomy>\r
2187                                               <clade>\r
2188                                                 <name>Magnaporthales &amp; Hypocreales</name>\r
2189                                                 <clade>\r
2190                                                   <taxonomy>\r
2191                                                     <id provider="uniprot">5125</id>\r
2192                                                     <scientific_name>Hypocreales</scientific_name>\r
2193                                                     <rank>order</rank>\r
2194                                                   </taxonomy>\r
2195                                                   <clade>\r
2196                                                     <taxonomy>\r
2197                                                       <id provider="uniprot">398408</id>\r
2198                                                       <code>AALXX</code>\r
2199                                                       <scientific_name>Acremonium alcalophilum</scientific_name>\r
2200                                                       <rank>species</rank>\r
2201                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
2202                                                     </taxonomy>\r
2203                                                   </clade>\r
2204                                                   <clade>\r
2205                                                     <taxonomy>\r
2206                                                       <id provider="uniprot">229533</id>\r
2207                                                       <code>GIBZE</code>\r
2208                                                       <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>\r
2209                                                       <common_name>Wheat head blight fungus</common_name>\r
2210                                                       <synonym>Fusarium graminearum</synonym>\r
2211                                                       <synonym>Gibberella zeae PH-1</synonym>\r
2212                                                       <rank>strain</rank>\r
2213                                                       <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>\r
2214                                                     </taxonomy>\r
2215                                                   </clade>\r
2216                                                   <clade>\r
2217                                                     <taxonomy>\r
2218                                                       <id provider="uniprot">413071</id>\r
2219                                                       <code>HYPVG</code>\r
2220                                                       <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>\r
2221                                                       <common_name>Gliocladium virens</common_name>\r
2222                                                       <synonym>Trichoderma virens</synonym>\r
2223                                                       <synonym>Gliocladium flavofuscum</synonym>\r
2224                                                       <synonym>Trichoderma virens Gv29-8</synonym>\r
2225                                                       <synonym>Gliocladium virens</synonym>\r
2226                                                       <rank>strain</rank>\r
2227                                                       <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>\r
2228                                                     </taxonomy>\r
2229                                                   </clade>\r
2230                                                 </clade>\r
2231                                                 <clade>\r
2232                                                   <taxonomy>\r
2233                                                     <id provider="uniprot">148305</id>\r
2234                                                     <code>MAGGR</code>\r
2235                                                     <scientific_name>Magnaporthe grisea</scientific_name>\r
2236                                                     <common_name>Rice blast fungus</common_name>\r
2237                                                     <synonym>Pyricularia grisea</synonym>\r
2238                                                     <rank>species</rank>\r
2239                                                     <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>\r
2240                                                   </taxonomy>\r
2241                                                 </clade>\r
2242                                               </clade>\r
2243                                               <clade>\r
2244                                                 <taxonomy>\r
2245                                                   <id provider="uniprot">5139</id>\r
2246                                                   <scientific_name>Sordariales</scientific_name>\r
2247                                                   <rank>order</rank>\r
2248                                                 </taxonomy>\r
2249                                                 <clade>\r
2250                                                   <taxonomy>\r
2251                                                     <id provider="uniprot">35718</id>\r
2252                                                     <scientific_name>Chaetomiaceae</scientific_name>\r
2253                                                     <rank>family</rank>\r
2254                                                   </taxonomy>\r
2255                                                   <clade>\r
2256                                                     <taxonomy>\r
2257                                                       <id provider="uniprot">35719</id>\r
2258                                                       <scientific_name>Thielavia</scientific_name>\r
2259                                                       <rank>genus</rank>\r
2260                                                     </taxonomy>\r
2261                                                     <clade>\r
2262                                                       <taxonomy>\r
2263                                                         <id provider="uniprot">573729</id>\r
2264                                                         <code>THIHA</code>\r
2265                                                         <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>\r
2266                                                         <authority>(Apinis) Oorschot 1977</authority>\r
2267                                                         <synonym>Sporotrichum thermophilum</synonym>\r
2268                                                         <synonym>Myceliophthora thermophila</synonym>\r
2269                                                         <rank>species</rank>\r
2270                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
2271                                                       </taxonomy>\r
2272                                                     </clade>\r
2273                                                     <clade>\r
2274                                                       <taxonomy>\r
2275                                                         <id provider="uniprot">578455</id>\r
2276                                                         <code>THITE</code>\r
2277                                                         <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>\r
2278                                                         <synonym>Acremonium alabamense</synonym>\r
2279                                                         <synonym>Thielavia terrestris NRRL 8126</synonym>\r
2280                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
2281                                                       </taxonomy>\r
2282                                                     </clade>\r
2283                                                   </clade>\r
2284                                                   <clade>\r
2285                                                     <taxonomy>\r
2286                                                       <id provider="uniprot">306901</id>\r
2287                                                       <code>CHAGB</code>\r
2288                                                       <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>\r
2289                                                       <authority>Kunze 1817</authority>\r
2290                                                       <common_name>Soil fungus</common_name>\r
2291                                                       <rank>strain</rank>\r
2292                                                     </taxonomy>\r
2293                                                   </clade>\r
2294                                                 </clade>\r
2295                                                 <clade>\r
2296                                                   <taxonomy>\r
2297                                                     <id provider="uniprot">367110</id>\r
2298                                                     <code>NEUCR</code>\r
2299                                                     <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>\r
2300                                                     <rank>strain</rank>\r
2301                                                   </taxonomy>\r
2302                                                 </clade>\r
2303                                               </clade>\r
2304                                             </clade>\r
2305                                             <clade>\r
2306                                               <taxonomy>\r
2307                                                 <id provider="uniprot">147548</id>\r
2308                                                 <scientific_name>Leotiomycetes</scientific_name>\r
2309                                                 <rank>class</rank>\r
2310                                               </taxonomy>\r
2311                                               <clade>\r
2312                                                 <taxonomy>\r
2313                                                   <id provider="uniprot">28983</id>\r
2314                                                   <scientific_name>Sclerotiniaceae</scientific_name>\r
2315                                                   <rank>family</rank>\r
2316                                                 </taxonomy>\r
2317                                                 <clade>\r
2318                                                   <taxonomy>\r
2319                                                     <id provider="uniprot">999810</id>\r
2320                                                     <code>BOTF4</code>\r
2321                                                     <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>\r
2322                                                     <common_name>Noble rot fungus</common_name>\r
2323                                                     <synonym>Botrytis cinerea</synonym>\r
2324                                                     <rank>strain</rank>\r
2325                                                   </taxonomy>\r
2326                                                 </clade>\r
2327                                                 <clade>\r
2328                                                   <taxonomy>\r
2329                                                     <id provider="uniprot">665079</id>\r
2330                                                     <code>SCLS1</code>\r
2331                                                     <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>\r
2332                                                     <common_name>White mold</common_name>\r
2333                                                     <synonym>Whetzelinia sclerotiorum</synonym>\r
2334                                                     <rank>strain</rank>\r
2335                                                   </taxonomy>\r
2336                                                 </clade>\r
2337                                               </clade>\r
2338                                               <clade>\r
2339                                                 <taxonomy>\r
2340                                                   <id provider="uniprot">78148</id>\r
2341                                                   <scientific_name>Oidiodendron maius</scientific_name>\r
2342                                                   <rank>species</rank>\r
2343                                                 </taxonomy>\r
2344                                               </clade>\r
2345                                             </clade>\r
2346                                           </clade>\r
2347                                           <clade>\r
2348                                             <taxonomy>\r
2349                                               <id provider="uniprot">388435</id>\r
2350                                               <scientific_name>Lecanoromycetidae</scientific_name>\r
2351                                               <rank>subclass</rank>\r
2352                                             </taxonomy>\r
2353                                             <clade>\r
2354                                               <taxonomy>\r
2355                                                 <id provider="uniprot">27339</id>\r
2356                                                 <scientific_name>Cladonia grayi</scientific_name>\r
2357                                                 <synonym>Cladonia grayi Merr</synonym>\r
2358                                                 <rank>species</rank>\r
2359                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
2360                                               </taxonomy>\r
2361                                             </clade>\r
2362                                             <clade>\r
2363                                               <taxonomy>\r
2364                                                 <id provider="uniprot">107463</id>\r
2365                                                 <scientific_name>Xanthoria parietina</scientific_name>\r
2366                                                 <rank>species</rank>\r
2367                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
2368                                               </taxonomy>\r
2369                                             </clade>\r
2370                                           </clade>\r
2371                                         </clade>\r
2372                                         <clade>\r
2373                                           <taxonomy>\r
2374                                             <id provider="uniprot">147541</id>\r
2375                                             <scientific_name>Dothideomycetes</scientific_name>\r
2376                                             <common_name>bitunicate ascomycetes</common_name>\r
2377                                             <rank>class</rank>\r
2378                                           </taxonomy>\r
2379                                           <reference doi="10.3114/sim.2009.64.01">\r
2380                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
2381                                           </reference>\r
2382                                           <clade>\r
2383                                             <taxonomy>\r
2384                                               <id provider="uniprot">451867</id>\r
2385                                               <scientific_name>Dothideomycetidae</scientific_name>\r
2386                                               <rank>subclass</rank>\r
2387                                             </taxonomy>\r
2388                                             <reference doi="10.3852/mycologia.98.6.1041">\r
2389                                               <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>\r
2390                                             </reference>\r
2391                                             <reference>\r
2392                                             </reference>\r
2393                                             <reference>\r
2394                                             </reference>\r
2395                                             <clade>\r
2396                                               <taxonomy>\r
2397                                                 <id provider="uniprot">134362</id>\r
2398                                                 <scientific_name>Capnodiales</scientific_name>\r
2399                                                 <rank>order</rank>\r
2400                                               </taxonomy>\r
2401                                               <clade>\r
2402                                                 <taxonomy>\r
2403                                                   <id provider="uniprot">41254</id>\r
2404                                                   <scientific_name>Mycosphaerella</scientific_name>\r
2405                                                   <rank>genus</rank>\r
2406                                                 </taxonomy>\r
2407                                                 <clade>\r
2408                                                   <taxonomy>\r
2409                                                     <id provider="uniprot">83344</id>\r
2410                                                     <code>PFIXX</code>\r
2411                                                     <scientific_name>Pseudocercospora fijiensis</scientific_name>\r
2412                                                     <synonym>Mycosphaerella fijiensis</synonym>\r
2413                                                     <rank>species</rank>\r
2414                                                   </taxonomy>\r
2415                                                 </clade>\r
2416                                                 <clade>\r
2417                                                   <taxonomy>\r
2418                                                     <id provider="uniprot">336722</id>\r
2419                                                     <code>MYCGM</code>\r
2420                                                     <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>\r
2421                                                     <common_name>Speckled leaf blotch fungus</common_name>\r
2422                                                     <synonym>Zymoseptoria tritici IPO323</synonym>\r
2423                                                     <synonym>Mycosphaerella graminicola IPO323</synonym>\r
2424                                                     <synonym>Septoria tritici</synonym>\r
2425                                                     <rank>strain</rank>\r
2426                                                   </taxonomy>\r
2427                                                 </clade>\r
2428                                                 <clade>\r
2429                                                   <taxonomy>\r
2430                                                     <id provider="uniprot">64363</id>\r
2431                                                     <code>MYCPJ</code>\r
2432                                                     <scientific_name>Mycosphaerella pini</scientific_name>\r
2433                                                     <common_name>Red band needle blight disease fungus</common_name>\r
2434                                                     <synonym>Dothistroma septosporum</synonym>\r
2435                                                     <synonym>Dothistroma pini</synonym>\r
2436                                                     <rank>species</rank>\r
2437                                                   </taxonomy>\r
2438                                                 </clade>\r
2439                                                 <clade>\r
2440                                                   <taxonomy>\r
2441                                                     <id provider="uniprot">692275</id>\r
2442                                                     <code>MPSXX</code>\r
2443                                                     <scientific_name>Mycosphaerella populorum SO2202</scientific_name>\r
2444                                                     <synonym>Septoria musiva SO2202</synonym>\r
2445                                                     <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>\r
2446                                                   </taxonomy>\r
2447                                                 </clade>\r
2448                                               </clade>\r
2449                                               <clade>\r
2450                                                 <taxonomy>\r
2451                                                   <id provider="uniprot">430998</id>\r
2452                                                   <code>BCOXX</code>\r
2453                                                   <scientific_name>Baudoinia compniacensis</scientific_name>\r
2454                                                   <common_name>Angels&apos; Share fungus</common_name>\r
2455                                                   <synonym>Torula compniacensis</synonym>\r
2456                                                   <rank>species</rank>\r
2457                                                   <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>\r
2458                                                 </taxonomy>\r
2459                                               </clade>\r
2460                                             </clade>\r
2461                                             <clade>\r
2462                                               <taxonomy>\r
2463                                                 <id provider="uniprot">5580</id>\r
2464                                                 <code>AURPU</code>\r
2465                                                 <scientific_name>Aureobasidium pullulans</scientific_name>\r
2466                                                 <common_name>Black yeast</common_name>\r
2467                                                 <synonym>Pullularia pullulans</synonym>\r
2468                                                 <rank>species</rank>\r
2469                                               </taxonomy>\r
2470                                               <clade>\r
2471                                                 <taxonomy>\r
2472                                                   <id provider="uniprot">178873</id>\r
2473                                                   <code>APPXX</code>\r
2474                                                   <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>\r
2475                                                   <rank>varietas</rank>\r
2476                                                 </taxonomy>\r
2477                                               </clade>\r
2478                                               <clade>\r
2479                                                 <taxonomy>\r
2480                                                   <id provider="uniprot">46634</id>\r
2481                                                   <code>APMXX</code>\r
2482                                                   <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>\r
2483                                                   <rank>varietas</rank>\r
2484                                                   <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>\r
2485                                                 </taxonomy>\r
2486                                               </clade>\r
2487                                               <clade>\r
2488                                                 <taxonomy>\r
2489                                                   <id provider="uniprot">1042127</id>\r
2490                                                   <code>APSXX</code>\r
2491                                                   <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>\r
2492                                                   <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>\r
2493                                                   <rank>varietas</rank>\r
2494                                                 </taxonomy>\r
2495                                               </clade>\r
2496                                             </clade>\r
2497                                           </clade>\r
2498                                           <clade>\r
2499                                             <taxonomy>\r
2500                                               <id provider="uniprot">715340</id>\r
2501                                               <scientific_name>Pleosporineae</scientific_name>\r
2502                                               <rank>suborder</rank>\r
2503                                             </taxonomy>\r
2504                                             <clade>\r
2505                                               <taxonomy>\r
2506                                                 <id provider="uniprot">28556</id>\r
2507                                                 <scientific_name>Pleosporaceae</scientific_name>\r
2508                                                 <rank>family</rank>\r
2509                                               </taxonomy>\r
2510                                               <clade>\r
2511                                                 <name>Cochliobolus &amp; Setosphaeria</name>\r
2512                                                 <clade>\r
2513                                                   <taxonomy>\r
2514                                                     <id provider="uniprot">45130</id>\r
2515                                                     <code>COCSA</code>\r
2516                                                     <scientific_name>Cochliobolus sativus</scientific_name>\r
2517                                                     <synonym>Bipolaris sorokiniana</synonym>\r
2518                                                     <rank>species</rank>\r
2519                                                     <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
2520                                                   </taxonomy>\r
2521                                                 </clade>\r
2522                                                 <clade>\r
2523                                                   <taxonomy>\r
2524                                                     <id provider="uniprot">93612</id>\r
2525                                                     <code>SETTU</code>\r
2526                                                     <scientific_name>Setosphaeria turcica</scientific_name>\r
2527                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
2528                                                     <common_name>Northern corn leaf blight disease fungus</common_name>\r
2529                                                     <synonym>Exserohilum turcicum</synonym>\r
2530                                                     <synonym>Helminthosporium turcicum</synonym>\r
2531                                                     <rank>species</rank>\r
2532                                                   </taxonomy>\r
2533                                                 </clade>\r
2534                                               </clade>\r
2535                                               <clade>\r
2536                                                 <taxonomy>\r
2537                                                   <id provider="uniprot">426418</id>\r
2538                                                   <code>PYRTR</code>\r
2539                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
2540                                                   <common_name>Wheat tan spot fungus</common_name>\r
2541                                                   <synonym>Drechslera tritici-repentis</synonym>\r
2542                                                   <rank>strain</rank>\r
2543                                                 </taxonomy>\r
2544                                               </clade>\r
2545                                             </clade>\r
2546                                             <clade>\r
2547                                               <taxonomy>\r
2548                                                 <id provider="uniprot">321614</id>\r
2549                                                 <code>PHANO</code>\r
2550                                                 <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>\r
2551                                                 <common_name>Glume blotch fungus</common_name>\r
2552                                                 <synonym>Septoria nodorum</synonym>\r
2553                                                 <rank>strain</rank>\r
2554                                               </taxonomy>\r
2555                                             </clade>\r
2556                                           </clade>\r
2557                                         </clade>\r
2558                                       </clade>\r
2559                                       <clade>\r
2560                                         <taxonomy>\r
2561                                           <id provider="uniprot">28568</id>\r
2562                                           <scientific_name>Trichocomaceae</scientific_name>\r
2563                                           <rank>family</rank>\r
2564                                         </taxonomy>\r
2565                                         <clade>\r
2566                                           <taxonomy>\r
2567                                             <id provider="uniprot">5052</id>\r
2568                                             <scientific_name>Aspergillus</scientific_name>\r
2569                                             <rank>genus</rank>\r
2570                                           </taxonomy>\r
2571                                           <clade>\r
2572                                             <taxonomy>\r
2573                                               <id provider="uniprot">332952</id>\r
2574                                               <code>ASPFN</code>\r
2575                                               <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>\r
2576                                               <synonym>Aspergillus flavus NRRL3357</synonym>\r
2577                                               <rank>strain</rank>\r
2578                                               <uri>http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg</uri>\r
2579                                             </taxonomy>\r
2580                                           </clade>\r
2581                                           <clade>\r
2582                                             <taxonomy>\r
2583                                               <id provider="uniprot">425011</id>\r
2584                                               <code>ASPNC</code>\r
2585                                               <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>\r
2586                                               <synonym>Aspergillus niger CBS 513.88</synonym>\r
2587                                               <rank>strain</rank>\r
2588                                               <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>\r
2589                                             </taxonomy>\r
2590                                           </clade>\r
2591                                           <clade>\r
2592                                             <taxonomy>\r
2593                                               <id provider="uniprot">344612</id>\r
2594                                               <code>ASPCL</code>\r
2595                                               <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>\r
2596                                               <synonym>Aspergillus clavatus NRRL 1</synonym>\r
2597                                             </taxonomy>\r
2598                                           </clade>\r
2599                                         </clade>\r
2600                                         <clade>\r
2601                                           <name>Neosartorya &amp; Emericella</name>\r
2602                                           <clade>\r
2603                                             <taxonomy>\r
2604                                               <id provider="uniprot">227321</id>\r
2605                                               <code>EMENI</code>\r
2606                                               <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>\r
2607                                               <authority>Vuill. 1927</authority>\r
2608                                               <synonym>Aspergillus nidulans</synonym>\r
2609                                               <rank>strain</rank>\r
2610                                             </taxonomy>\r
2611                                           </clade>\r
2612                                           <clade>\r
2613                                             <taxonomy>\r
2614                                               <id provider="uniprot">331117</id>\r
2615                                               <code>NEOFI</code>\r
2616                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
2617                                               <synonym>Aspergillus fischerianus</synonym>\r
2618                                               <rank>strain</rank>\r
2619                                             </taxonomy>\r
2620                                           </clade>\r
2621                                         </clade>\r
2622                                       </clade>\r
2623                                     </clade>\r
2624                                     <clade>\r
2625                                       <taxonomy>\r
2626                                         <id provider="uniprot">33183</id>\r
2627                                         <scientific_name>Onygenales</scientific_name>\r
2628                                         <rank>order</rank>\r
2629                                       </taxonomy>\r
2630                                       <reference>\r
2631                                         <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>\r
2632                                       </reference>\r
2633                                       <reference>\r
2634                                       </reference>\r
2635                                       <clade>\r
2636                                         <name>mitosporic Onygenales &amp; Onygenaceae</name>\r
2637                                         <clade>\r
2638                                           <taxonomy>\r
2639                                             <id provider="uniprot">246410</id>\r
2640                                             <code>COCIM</code>\r
2641                                             <scientific_name>Coccidioides immitis (strain RS)</scientific_name>\r
2642                                             <common_name>Valley fever fungus</common_name>\r
2643                                             <synonym>Coccidioides immitis RS</synonym>\r
2644                                           </taxonomy>\r
2645                                         </clade>\r
2646                                         <clade>\r
2647                                           <taxonomy>\r
2648                                             <id provider="uniprot">336963</id>\r
2649                                             <code>UNCRE</code>\r
2650                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
2651                                             <rank>strain</rank>\r
2652                                           </taxonomy>\r
2653                                         </clade>\r
2654                                       </clade>\r
2655                                       <clade>\r
2656                                         <taxonomy>\r
2657                                           <id provider="uniprot">447093</id>\r
2658                                           <code>AJECG</code>\r
2659                                           <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>\r
2660                                           <common_name>Darling&apos;s disease fungus</common_name>\r
2661                                           <synonym>Histoplasma capsulatum</synonym>\r
2662                                         </taxonomy>\r
2663                                       </clade>\r
2664                                     </clade>\r
2665                                   </clade>\r
2666                                   <clade>\r
2667                                     <taxonomy>\r
2668                                       <id provider="uniprot">656061</id>\r
2669                                       <code>TUBMM</code>\r
2670                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
2671                                       <common_name>Perigord black truffle</common_name>\r
2672                                       <synonym>Tuber melanosporum Mel28</synonym>\r
2673                                       <rank>strain</rank>\r
2674                                       <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>\r
2675                                     </taxonomy>\r
2676                                   </clade>\r
2677                                 </clade>\r
2678                                 <clade>\r
2679                                   <taxonomy>\r
2680                                     <id provider="uniprot">4892</id>\r
2681                                     <scientific_name>Saccharomycetales</scientific_name>\r
2682                                     <common_name>budding yeasts</common_name>\r
2683                                     <rank>order</rank>\r
2684                                   </taxonomy>\r
2685                                   <reference doi="10.1186/1471-2148-6-99">\r
2686                                     <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>\r
2687                                   </reference>\r
2688                                   <reference>\r
2689                                   </reference>\r
2690                                   <clade>\r
2691                                     <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>\r
2692                                     <clade>\r
2693                                       <taxonomy>\r
2694                                         <id provider="uniprot">4893</id>\r
2695                                         <scientific_name>Saccharomycetaceae</scientific_name>\r
2696                                         <rank>family</rank>\r
2697                                       </taxonomy>\r
2698                                       <clade>\r
2699                                         <name>Naumovozyma &amp; Saccharomyces</name>\r
2700                                         <clade>\r
2701                                           <taxonomy>\r
2702                                             <id provider="uniprot">1064592</id>\r
2703                                             <code>NAUCC</code>\r
2704                                             <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>\r
2705                                             <common_name>Yeast</common_name>\r
2706                                             <synonym>Saccharomyces castellii</synonym>\r
2707                                             <rank>strain</rank>\r
2708                                           </taxonomy>\r
2709                                         </clade>\r
2710                                         <clade>\r
2711                                           <taxonomy>\r
2712                                             <id provider="uniprot">559292</id>\r
2713                                             <code>YEAST</code>\r
2714                                             <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>\r
2715                                             <common_name>Baker&apos;s yeast</common_name>\r
2716                                             <rank>strain</rank>\r
2717                                           </taxonomy>\r
2718                                         </clade>\r
2719                                       </clade>\r
2720                                       <clade>\r
2721                                         <name>Eremothecium &amp; Kluyveromyces</name>\r
2722                                         <clade>\r
2723                                           <taxonomy>\r
2724                                             <id provider="uniprot">284590</id>\r
2725                                             <code>KLULA</code>\r
2726                                             <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>\r
2727                                             <common_name>Yeast</common_name>\r
2728                                             <synonym>Candida sphaerica</synonym>\r
2729                                             <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>\r
2730                                           </taxonomy>\r
2731                                         </clade>\r
2732                                         <clade>\r
2733                                           <taxonomy>\r
2734                                             <id provider="uniprot">284811</id>\r
2735                                             <code>ASHGO</code>\r
2736                                             <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>\r
2737                                             <common_name>Yeast</common_name>\r
2738                                             <synonym>Eremothecium gossypii</synonym>\r
2739                                           </taxonomy>\r
2740                                         </clade>\r
2741                                       </clade>\r
2742                                     </clade>\r
2743                                     <clade>\r
2744                                       <name>Debaryomyces &amp; Candida</name>\r
2745                                       <clade>\r
2746                                         <taxonomy>\r
2747                                           <id provider="uniprot">5475</id>\r
2748                                           <scientific_name>Candida</scientific_name>\r
2749                                           <synonym>Torulopsis</synonym>\r
2750                                           <rank>genus</rank>\r
2751                                         </taxonomy>\r
2752                                         <clade>\r
2753                                           <taxonomy>\r
2754                                             <id provider="uniprot">237561</id>\r
2755                                             <code>CANAL</code>\r
2756                                             <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>\r
2757                                             <common_name>Yeast</common_name>\r
2758                                             <rank>strain</rank>\r
2759                                           </taxonomy>\r
2760                                         </clade>\r
2761                                         <clade>\r
2762                                           <taxonomy>\r
2763                                             <id provider="uniprot">294747</id>\r
2764                                             <code>CANTT</code>\r
2765                                             <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>\r
2766                                             <common_name>Yeast</common_name>\r
2767                                             <rank>strain</rank>\r
2768                                           </taxonomy>\r
2769                                         </clade>\r
2770                                       </clade>\r
2771                                       <clade>\r
2772                                         <taxonomy>\r
2773                                           <id provider="uniprot">284592</id>\r
2774                                           <code>DEBHA</code>\r
2775                                           <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>\r
2776                                           <common_name>Yeast</common_name>\r
2777                                           <synonym>Torulaspora hansenii</synonym>\r
2778                                           <synonym>Debaryomyces hansenii CBS767</synonym>\r
2779                                         </taxonomy>\r
2780                                       </clade>\r
2781                                     </clade>\r
2782                                   </clade>\r
2783                                   <clade>\r
2784                                     <taxonomy>\r
2785                                       <id provider="uniprot">284591</id>\r
2786                                       <code>YARLI</code>\r
2787                                       <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>\r
2788                                       <common_name>Yeast</common_name>\r
2789                                       <synonym>Candida lipolytica</synonym>\r
2790                                       <rank>strain</rank>\r
2791                                     </taxonomy>\r
2792                                   </clade>\r
2793                                 </clade>\r
2794                               </clade>\r
2795                               <clade>\r
2796                                 <taxonomy>\r
2797                                   <id provider="uniprot">451866</id>\r
2798                                   <scientific_name>Taphrinomycotina</scientific_name>\r
2799                                   <rank>subphylum</rank>\r
2800                                 </taxonomy>\r
2801                                 <clade>\r
2802                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
2803                                   <clade>\r
2804                                     <taxonomy>\r
2805                                       <id provider="uniprot">4895</id>\r
2806                                       <scientific_name>Schizosaccharomyces</scientific_name>\r
2807                                       <rank>genus</rank>\r
2808                                     </taxonomy>\r
2809                                     <clade>\r
2810                                       <taxonomy>\r
2811                                         <id provider="uniprot">402676</id>\r
2812                                         <code>SCHJY</code>\r
2813                                         <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>\r
2814                                         <common_name>Fission yeast</common_name>\r
2815                                         <rank>strain</rank>\r
2816                                       </taxonomy>\r
2817                                     </clade>\r
2818                                     <clade>\r
2819                                       <taxonomy>\r
2820                                         <id provider="uniprot">4899</id>\r
2821                                         <code>SCHOT</code>\r
2822                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>\r
2823                                         <common_name>Fission yeast</common_name>\r
2824                                         <rank>species</rank>\r
2825                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>\r
2826                                       </taxonomy>\r
2827                                     </clade>\r
2828                                     <clade>\r
2829                                       <taxonomy>\r
2830                                         <id provider="uniprot">284812</id>\r
2831                                         <code>SCHPO</code>\r
2832                                         <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>\r
2833                                         <common_name>Fission yeast</common_name>\r
2834                                         <rank>strain</rank>\r
2835                                       </taxonomy>\r
2836                                     </clade>\r
2837                                   </clade>\r
2838                                   <clade>\r
2839                                     <taxonomy>\r
2840                                       <id provider="uniprot">4754</id>\r
2841                                       <code>PNECA</code>\r
2842                                       <scientific_name>Pneumocystis carinii</scientific_name>\r
2843                                       <rank>species</rank>\r
2844                                     </taxonomy>\r
2845                                   </clade>\r
2846                                 </clade>\r
2847                                 <clade>\r
2848                                   <taxonomy>\r
2849                                     <id provider="uniprot">5606</id>\r
2850                                     <scientific_name>Saitoella complicata</scientific_name>\r
2851                                     <rank>species</rank>\r
2852                                   </taxonomy>\r
2853                                 </clade>\r
2854                               </clade>\r
2855                             </clade>\r
2856                             <clade>\r
2857                               <taxonomy>\r
2858                                 <id provider="uniprot">5204</id>\r
2859                                 <scientific_name>Basidiomycota</scientific_name>\r
2860                                 <rank>phylum</rank>\r
2861                               </taxonomy>\r
2862                               <clade>\r
2863                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
2864                                 <clade>\r
2865                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
2866                                   <clade>\r
2867                                     <taxonomy>\r
2868                                       <id provider="uniprot">5302</id>\r
2869                                       <scientific_name>Agaricomycotina</scientific_name>\r
2870                                     </taxonomy>\r
2871                                     <clade>\r
2872                                       <taxonomy>\r
2873                                         <id provider="uniprot">155619</id>\r
2874                                         <scientific_name>Homobasidiomycetes</scientific_name>\r
2875                                         <rank>class</rank>\r
2876                                       </taxonomy>\r
2877                                       <reference doi="10.1098/rspb.2002.2123">\r
2878                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
2879                                       </reference>\r
2880                                       <clade>\r
2881                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
2882                                         <clade>\r
2883                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
2884                                           <clade>\r
2885                                             <taxonomy>\r
2886                                               <id provider="uniprot">452333</id>\r
2887                                               <scientific_name>Agaricomycetidae</scientific_name>\r
2888                                               <rank>subclass</rank>\r
2889                                             </taxonomy>\r
2890                                             <clade>\r
2891                                               <name>Agaricales &amp; Boletales</name>\r
2892                                               <clade>\r
2893                                                 <taxonomy>\r
2894                                                   <id provider="uniprot">5338</id>\r
2895                                                   <scientific_name>Agaricales</scientific_name>\r
2896                                                   <rank>order</rank>\r
2897                                                 </taxonomy>\r
2898                                                 <clade>\r
2899                                                   <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
2900                                                   <clade>\r
2901                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
2902                                                     <clade>\r
2903                                                       <name>Agaricus &amp; Coprinopsis</name>\r
2904                                                       <clade>\r
2905                                                         <taxonomy>\r
2906                                                           <id provider="uniprot">597362</id>\r
2907                                                           <code>AGABU</code>\r
2908                                                           <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>\r
2909                                                           <common_name>White button mushroom</common_name>\r
2910                                                           <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>\r
2911                                                           <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
2912                                                         </taxonomy>\r
2913                                                       </clade>\r
2914                                                       <clade>\r
2915                                                         <taxonomy>\r
2916                                                           <id provider="uniprot">5346</id>\r
2917                                                           <code>COPC7</code>\r
2918                                                           <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>\r
2919                                                           <common_name>Inky cap fungus</common_name>\r
2920                                                           <synonym>Hormographiella aspergillata</synonym>\r
2921                                                           <rank>strain</rank>\r
2922                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>\r
2923                                                         </taxonomy>\r
2924                                                       </clade>\r
2925                                                     </clade>\r
2926                                                     <clade>\r
2927                                                       <taxonomy>\r
2928                                                         <id provider="uniprot">486041</id>\r
2929                                                         <code>LACBS</code>\r
2930                                                         <scientific_name>Laccaria bicolor</scientific_name>\r
2931                                                         <common_name>Bicoloured deceiver</common_name>\r
2932                                                         <synonym>Laccaria laccata var. bicolor</synonym>\r
2933                                                         <synonym>Laccaria bicolor S238N-H82</synonym>\r
2934                                                         <rank>strain</rank>\r
2935                                                         <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>\r
2936                                                       </taxonomy>\r
2937                                                     </clade>\r
2938                                                   </clade>\r
2939                                                   <clade>\r
2940                                                     <taxonomy>\r
2941                                                       <id provider="uniprot">206324</id>\r
2942                                                       <scientific_name>Gymnopus luxurians</scientific_name>\r
2943                                                       <rank>species</rank>\r
2944                                                       <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
2945                                                     </taxonomy>\r
2946                                                   </clade>\r
2947                                                 </clade>\r
2948                                                 <clade>\r
2949                                                   <taxonomy>\r
2950                                                     <id provider="uniprot">5322</id>\r
2951                                                     <code>PLEOS</code>\r
2952                                                     <scientific_name>Pleurotus ostreatus</scientific_name>\r
2953                                                     <common_name>Oyster mushroom</common_name>\r
2954                                                     <synonym>White-rot fungus</synonym>\r
2955                                                     <rank>species</rank>\r
2956                                                     <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
2957                                                   </taxonomy>\r
2958                                                 </clade>\r
2959                                               </clade>\r
2960                                               <clade>\r
2961                                                 <taxonomy>\r
2962                                                   <id provider="uniprot">68889</id>\r
2963                                                   <scientific_name>Boletales</scientific_name>\r
2964                                                   <synonym>Melanogastrales</synonym>\r
2965                                                   <synonym>Sclerodermatales</synonym>\r
2966                                                   <rank>order</rank>\r
2967                                                 </taxonomy>\r
2968                                                 <clade>\r
2969                                                   <taxonomy>\r
2970                                                     <id provider="uniprot">227334</id>\r
2971                                                     <scientific_name>Coniophorineae</scientific_name>\r
2972                                                     <rank>suborder</rank>\r
2973                                                   </taxonomy>\r
2974                                                   <clade>\r
2975                                                     <taxonomy>\r
2976                                                       <id provider="uniprot">80637</id>\r
2977                                                       <code>CPUXX</code>\r
2978                                                       <scientific_name>Coniophora puteana</scientific_name>\r
2979                                                       <authority>Schum. ex Fries</authority>\r
2980                                                       <common_name>cellar fungus</common_name>\r
2981                                                       <rank>species</rank>\r
2982                                                       <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
2983                                                     </taxonomy>\r
2984                                                   </clade>\r
2985                                                   <clade>\r
2986                                                     <taxonomy>\r
2987                                                       <id provider="uniprot">578457</id>\r
2988                                                       <code>SERL9</code>\r
2989                                                       <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>\r
2990                                                       <common_name>Dry rot fungus</common_name>\r
2991                                                       <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>\r
2992                                                     </taxonomy>\r
2993                                                   </clade>\r
2994                                                 </clade>\r
2995                                                 <clade>\r
2996                                                   <taxonomy>\r
2997                                                     <id provider="uniprot">388859</id>\r
2998                                                     <scientific_name>Hydnomerulius pinastri</scientific_name>\r
2999                                                     <common_name>Spiny dry rot fungus</common_name>\r
3000                                                     <rank>species</rank>\r
3001                                                     <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>\r
3002                                                   </taxonomy>\r
3003                                                 </clade>\r
3004                                               </clade>\r
3005                                             </clade>\r
3006                                             <clade>\r
3007                                               <taxonomy>\r
3008                                                 <id provider="uniprot">202697</id>\r
3009                                                 <code>JARXX</code>\r
3010                                                 <scientific_name>Jaapia argillacea</scientific_name>\r
3011                                                 <rank>species</rank>\r
3012                                                 <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>\r
3013                                               </taxonomy>\r
3014                                             </clade>\r
3015                                           </clade>\r
3016                                           <clade>\r
3017                                             <taxonomy>\r
3018                                               <id provider="uniprot">104355</id>\r
3019                                               <code>GLOTR</code>\r
3020                                               <scientific_name>Gloeophyllum trabeum</scientific_name>\r
3021                                               <common_name>Brown rot fungus</common_name>\r
3022                                               <rank>species</rank>\r
3023                                               <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>\r
3024                                             </taxonomy>\r
3025                                           </clade>\r
3026                                         </clade>\r
3027                                         <clade>\r
3028                                           <taxonomy>\r
3029                                             <id provider="uniprot">5303</id>\r
3030                                             <scientific_name>Aphyllophorales</scientific_name>\r
3031                                             <authority>Gäum. (1926)</authority>\r
3032                                             <common_name>Shelf Fungi</common_name>\r
3033                                             <synonym>Polyporales</synonym>\r
3034                                             <rank>order</rank>\r
3035                                           </taxonomy>\r
3036                                           <clade>\r
3037                                             <taxonomy>\r
3038                                               <id provider="uniprot">83233</id>\r
3039                                               <scientific_name>Coriolaceae</scientific_name>\r
3040                                               <rank>family</rank>\r
3041                                             </taxonomy>\r
3042                                             <reference doi="10.1017/S1477200005001623">\r
3043                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
3044                                             </reference>\r
3045                                             <reference>\r
3046                                             </reference>\r
3047                                             <reference>\r
3048                                             </reference>\r
3049                                             <clade>\r
3050                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
3051                                               <clade>\r
3052                                                 <name>Antrodia clade</name>\r
3053                                                 <taxonomy>\r
3054                                                   <common_name>Antrodia clade</common_name>\r
3055                                                 </taxonomy>\r
3056                                                 <clade>\r
3057                                                   <taxonomy>\r
3058                                                     <id provider="uniprot">40483</id>\r
3059                                                     <code>FPIXX</code>\r
3060                                                     <scientific_name>Fomitopsis pinicola</scientific_name>\r
3061                                                     <authority>(Swartz) P. Karsten</authority>\r
3062                                                     <common_name>Red banded polypore</common_name>\r
3063                                                     <synonym>Fomes pinicola</synonym>\r
3064                                                     <synonym>Boletus pinicola</synonym>\r
3065                                                     <rank>species</rank>\r
3066                                                     <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>\r
3067                                                   </taxonomy>\r
3068                                                 </clade>\r
3069                                                 <clade>\r
3070                                                   <taxonomy>\r
3071                                                     <id provider="uniprot">104341</id>\r
3072                                                     <code>PPLXX</code>\r
3073                                                     <scientific_name>Postia placenta</scientific_name>\r
3074                                                     <synonym>Rhodonia placenta</synonym>\r
3075                                                     <rank>species</rank>\r
3076                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
3077                                                   </taxonomy>\r
3078                                                 </clade>\r
3079                                               </clade>\r
3080                                               <clade>\r
3081                                                 <name>core polyporoid clade</name>\r
3082                                                 <taxonomy>\r
3083                                                   <common_name>core polyporoid clade</common_name>\r
3084                                                 </taxonomy>\r
3085                                                 <clade>\r
3086                                                   <taxonomy>\r
3087                                                     <id provider="uniprot">5325</id>\r
3088                                                     <code>TRAVE</code>\r
3089                                                     <scientific_name>Trametes versicolor</scientific_name>\r
3090                                                     <authority>(L.) Lloyd 1921</authority>\r
3091                                                     <common_name>White-rot fungus</common_name>\r
3092                                                     <synonym>Coriolus versicolor</synonym>\r
3093                                                     <synonym>Bjerkandera versicolor</synonym>\r
3094                                                     <rank>species</rank>\r
3095                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>\r
3096                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>\r
3097                                                     <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>\r
3098                                                   </taxonomy>\r
3099                                                 </clade>\r
3100                                                 <clade>\r
3101                                                   <taxonomy>\r
3102                                                     <id provider="uniprot">742152</id>\r
3103                                                     <code>WOLCO</code>\r
3104                                                     <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>\r
3105                                                     <common_name>Brown rot fungus</common_name>\r
3106                                                     <synonym>Wolfiporia cocos MD-104 SS10</synonym>\r
3107                                                     <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>\r
3108                                                   </taxonomy>\r
3109                                                 </clade>\r
3110                                               </clade>\r
3111                                             </clade>\r
3112                                             <clade>\r
3113                                               <taxonomy>\r
3114                                                 <id provider="uniprot">42742</id>\r
3115                                                 <code>CERSU</code>\r
3116                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
3117                                                 <rank>species</rank>\r
3118                                               </taxonomy>\r
3119                                             </clade>\r
3120                                           </clade>\r
3121                                           <clade>\r
3122                                             <taxonomy>\r
3123                                               <id provider="uniprot">732165</id>\r
3124                                               <code>DICSQ</code>\r
3125                                               <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>\r
3126                                               <common_name>Western red white-rot fungus</common_name>\r
3127                                               <synonym>Dichomitus squalens LYAD-421 SS1</synonym>\r
3128                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
3129                                             </taxonomy>\r
3130                                           </clade>\r
3131                                         </clade>\r
3132                                       </clade>\r
3133                                       <clade>\r
3134                                         <taxonomy>\r
3135                                           <id provider="uniprot">13563</id>\r
3136                                           <code>HETAN</code>\r
3137                                           <scientific_name>Heterobasidion annosum</scientific_name>\r
3138                                           <common_name>Root rot fungus</common_name>\r
3139                                           <rank>species</rank>\r
3140                                         </taxonomy>\r
3141                                       </clade>\r
3142                                     </clade>\r
3143                                     <clade>\r
3144                                       <taxonomy>\r
3145                                         <id provider="uniprot">5215</id>\r
3146                                         <scientific_name>Tremellaceae</scientific_name>\r
3147                                         <rank>family</rank>\r
3148                                       </taxonomy>\r
3149                                       <clade>\r
3150                                         <taxonomy>\r
3151                                           <id provider="uniprot">5207</id>\r
3152                                           <code>CRYNE</code>\r
3153                                           <scientific_name>Cryptococcus neoformans</scientific_name>\r
3154                                           <synonym>Filobasidiella neoformans</synonym>\r
3155                                           <rank>species</rank>\r
3156                                         </taxonomy>\r
3157                                       </clade>\r
3158                                       <clade>\r
3159                                         <taxonomy>\r
3160                                           <id provider="eol">1029985</id>\r
3161                                           <code>TREME</code>\r
3162                                           <scientific_name>Tremella mesenterica</scientific_name>\r
3163                                           <authority>Pers. 1800</authority>\r
3164                                           <common_name>Jelly fungus</common_name>\r
3165                                           <synonym>Yellow Brain</synonym>\r
3166                                           <synonym>Tremella lutescens</synonym>\r
3167                                           <rank>species</rank>\r
3168                                         </taxonomy>\r
3169                                       </clade>\r
3170                                     </clade>\r
3171                                   </clade>\r
3172                                   <clade>\r
3173                                     <taxonomy>\r
3174                                       <id provider="uniprot">452284</id>\r
3175                                       <scientific_name>Ustilaginomycotina</scientific_name>\r
3176                                       <rank>subphylum</rank>\r
3177                                     </taxonomy>\r
3178                                     <clade>\r
3179                                       <taxonomy>\r
3180                                         <id provider="uniprot">425265</id>\r
3181                                         <code>MALGO</code>\r
3182                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
3183                                         <common_name>Dandruff-associated fungus</common_name>\r
3184                                       </taxonomy>\r
3185                                     </clade>\r
3186                                     <clade>\r
3187                                       <taxonomy>\r
3188                                         <id provider="uniprot">237631</id>\r
3189                                         <code>USTMA</code>\r
3190                                         <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>\r
3191                                         <common_name>Corn smut fungus</common_name>\r
3192                                         <rank>species</rank>\r
3193                                       </taxonomy>\r
3194                                     </clade>\r
3195                                   </clade>\r
3196                                 </clade>\r
3197                                 <clade>\r
3198                                   <taxonomy>\r
3199                                     <id provider="uniprot">29000</id>\r
3200                                     <scientific_name>Pucciniomycotina</scientific_name>\r
3201                                     <rank>subphylum</rank>\r
3202                                   </taxonomy>\r
3203                                   <clade>\r
3204                                     <taxonomy>\r
3205                                       <id provider="uniprot">5258</id>\r
3206                                       <scientific_name>Pucciniales</scientific_name>\r
3207                                       <common_name>rusts</common_name>\r
3208                                       <rank>order</rank>\r
3209                                     </taxonomy>\r
3210                                     <clade>\r
3211                                       <taxonomy>\r
3212                                         <id provider="uniprot">747676</id>\r
3213                                         <code>MELLP</code>\r
3214                                         <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>\r
3215                                         <authority>Kleb. 1902</authority>\r
3216                                         <common_name>Poplar leaf rust fungus</common_name>\r
3217                                         <synonym>Melampsora larici-populina 98AG31</synonym>\r
3218                                         <synonym>Melampsora laricis-populina 98AG31</synonym>\r
3219                                         <rank>strain</rank>\r
3220                                       </taxonomy>\r
3221                                     </clade>\r
3222                                     <clade>\r
3223                                       <taxonomy>\r
3224                                         <id provider="uniprot">5297</id>\r
3225                                         <code>PUCGR</code>\r
3226                                         <scientific_name>Puccinia graminis</scientific_name>\r
3227                                         <authority>Pers. 1794</authority>\r
3228                                         <common_name>Black stem rust fungus</common_name>\r
3229                                         <rank>species</rank>\r
3230                                       </taxonomy>\r
3231                                     </clade>\r
3232                                   </clade>\r
3233                                   <clade>\r
3234                                     <taxonomy>\r
3235                                       <id provider="uniprot">89013</id>\r
3236                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
3237                                     </taxonomy>\r
3238                                     <clade>\r
3239                                       <taxonomy>\r
3240                                         <id provider="uniprot">29898</id>\r
3241                                         <code>RHOGR</code>\r
3242                                         <scientific_name>Rhodotorula graminis</scientific_name>\r
3243                                         <common_name>Yeast</common_name>\r
3244                                         <rank>species</rank>\r
3245                                       </taxonomy>\r
3246                                     </clade>\r
3247                                     <clade>\r
3248                                       <taxonomy>\r
3249                                         <id provider="uniprot">40563</id>\r
3250                                         <code>SPORO</code>\r
3251                                         <scientific_name>Sporobolomyces roseus</scientific_name>\r
3252                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
3253                                         <rank>species</rank>\r
3254                                       </taxonomy>\r
3255                                     </clade>\r
3256                                   </clade>\r
3257                                 </clade>\r
3258                               </clade>\r
3259                               <clade>\r
3260                                 <taxonomy>\r
3261                                   <id provider="uniprot">671144</id>\r
3262                                   <code>WALSC</code>\r
3263                                   <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>\r
3264                                   <rank>strain</rank>\r
3265                                 </taxonomy>\r
3266                               </clade>\r
3267                             </clade>\r
3268                           </clade>\r
3269                           <clade>\r
3270                             <taxonomy>\r
3271                               <id provider="uniprot">451507</id>\r
3272                               <scientific_name>Mucoromycotina</scientific_name>\r
3273                               <rank>subphylum</rank>\r
3274                             </taxonomy>\r
3275                             <clade>\r
3276                               <taxonomy>\r
3277                                 <id provider="uniprot">34489</id>\r
3278                                 <scientific_name>Mucoraceae</scientific_name>\r
3279                                 <rank>family</rank>\r
3280                               </taxonomy>\r
3281                               <clade>\r
3282                                 <taxonomy>\r
3283                                   <id provider="uniprot">36080</id>\r
3284                                   <code>MUCCI</code>\r
3285                                   <scientific_name>Mucor circinelloides</scientific_name>\r
3286                                   <synonym>Mucor griseo-roseus</synonym>\r
3287                                   <rank>species</rank>\r
3288                                 </taxonomy>\r
3289                               </clade>\r
3290                               <clade>\r
3291                                 <taxonomy>\r
3292                                   <id provider="uniprot">4837</id>\r
3293                                   <code>PHYBL</code>\r
3294                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>\r
3295                                   <rank>species</rank>\r
3296                                 </taxonomy>\r
3297                               </clade>\r
3298                               <clade>\r
3299                                 <taxonomy>\r
3300                                   <id provider="uniprot">64495</id>\r
3301                                   <code>RHIOR</code>\r
3302                                   <scientific_name>Rhizopus oryzae</scientific_name>\r
3303                                   <common_name>Mucormycosis agent</common_name>\r
3304                                   <synonym>Rhizopus delemar</synonym>\r
3305                                   <synonym>Rhizopus arrhizus var. delemar</synonym>\r
3306                                   <rank>species</rank>\r
3307                                 </taxonomy>\r
3308                               </clade>\r
3309                             </clade>\r
3310                             <clade>\r
3311                               <taxonomy>\r
3312                                 <id provider="uniprot">1069443</id>\r
3313                                 <code>MVNXX</code>\r
3314                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>\r
3315                                 <rank>species</rank>\r
3316                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>\r
3317                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
3318                               </taxonomy>\r
3319                             </clade>\r
3320                           </clade>\r
3321                         </clade>\r
3322                         <clade>\r
3323                           <taxonomy>\r
3324                             <id provider="uniprot">61392</id>\r
3325                             <code>CREXX</code>\r
3326                             <scientific_name>Coemansia reversa</scientific_name>\r
3327                             <rank>species</rank>\r
3328                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>\r
3329                           </taxonomy>\r
3330                         </clade>\r
3331                       </clade>\r
3332                       <clade>\r
3333                         <taxonomy>\r
3334                           <id provider="uniprot">28583</id>\r
3335                           <code>ALLMA</code>\r
3336                           <scientific_name>Allomyces macrogynus</scientific_name>\r
3337                           <rank>species</rank>\r
3338                         </taxonomy>\r
3339                       </clade>\r
3340                     </clade>\r
3341                     <clade>\r
3342                       <taxonomy>\r
3343                         <id provider="uniprot">4761</id>\r
3344                         <scientific_name>Chytridiomycota</scientific_name>\r
3345                         <common_name>chytrids</common_name>\r
3346                         <synonym>Mastigomycotina</synonym>\r
3347                         <rank>phylum</rank>\r
3348                       </taxonomy>\r
3349                       <clade>\r
3350                         <taxonomy>\r
3351                           <id provider="uniprot">451435</id>\r
3352                           <scientific_name>Chytridiomycetes</scientific_name>\r
3353                           <rank>class</rank>\r
3354                         </taxonomy>\r
3355                         <clade>\r
3356                           <taxonomy>\r
3357                             <id provider="uniprot">684364</id>\r
3358                             <code>BATDJ</code>\r
3359                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>\r
3360                             <common_name>Frog chytrid fungus</common_name>\r
3361                             <rank>strain</rank>\r
3362                           </taxonomy>\r
3363                         </clade>\r
3364                         <clade>\r
3365                           <taxonomy>\r
3366                             <id provider="uniprot">109760</id>\r
3367                             <code>SPIPN</code>\r
3368                             <scientific_name>Spizellomyces punctatus</scientific_name>\r
3369                             <rank>species</rank>\r
3370                           </taxonomy>\r
3371                         </clade>\r
3372                       </clade>\r
3373                       <clade>\r
3374                         <taxonomy>\r
3375                           <id provider="uniprot">1123529</id>\r
3376                           <code>GONPR</code>\r
3377                           <scientific_name>Gonapodya prolifera</scientific_name>\r
3378                           <authority>A. Fisch. 1892</authority>\r
3379                           <common_name>Aquatic fungus</common_name>\r
3380                           <rank>species</rank>\r
3381                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
3382                         </taxonomy>\r
3383                       </clade>\r
3384                     </clade>\r
3385                   </clade>\r
3386                   <clade>\r
3387                     <taxonomy>\r
3388                       <id provider="uniprot">73868</id>\r
3389                       <code>PIRSE</code>\r
3390                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>\r
3391                       <rank>species</rank>\r
3392                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
3393                     </taxonomy>\r
3394                   </clade>\r
3395                 </clade>\r
3396                 <clade>\r
3397                   <taxonomy>\r
3398                     <id provider="uniprot">6029</id>\r
3399                     <scientific_name>Microsporidia</scientific_name>\r
3400                     <rank>phylum</rank>\r
3401                   </taxonomy>\r
3402                   <clade>\r
3403                     <taxonomy>\r
3404                       <id provider="uniprot">6032</id>\r
3405                       <scientific_name>Apansporoblastina</scientific_name>\r
3406                       <rank>suborder</rank>\r
3407                     </taxonomy>\r
3408                     <clade>\r
3409                       <taxonomy>\r
3410                         <id provider="uniprot">6033</id>\r
3411                         <scientific_name>Encephalitozoon</scientific_name>\r
3412                         <rank>genus</rank>\r
3413                       </taxonomy>\r
3414                       <clade>\r
3415                         <taxonomy>\r
3416                           <id provider="uniprot">284813</id>\r
3417                           <code>ENCCU</code>\r
3418                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>\r
3419                           <common_name>Microsporidian parasite</common_name>\r
3420                           <rank>strain</rank>\r
3421                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>\r
3422                         </taxonomy>\r
3423                       </clade>\r
3424                       <clade>\r
3425                         <taxonomy>\r
3426                           <id provider="uniprot">907965</id>\r
3427                           <code>ENCHA</code>\r
3428                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>\r
3429                           <common_name>Microsporidian parasite</common_name>\r
3430                           <rank>strain</rank>\r
3431                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>\r
3432                         </taxonomy>\r
3433                       </clade>\r
3434                     </clade>\r
3435                     <clade>\r
3436                       <taxonomy>\r
3437                         <id provider="uniprot">993615</id>\r
3438                         <code>VITCO</code>\r
3439                         <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>\r
3440                         <common_name>Microsporidian parasite</common_name>\r
3441                         <synonym>Nosema corneum</synonym>\r
3442                       </taxonomy>\r
3443                     </clade>\r
3444                   </clade>\r
3445                   <clade>\r
3446                     <taxonomy>\r
3447                       <id provider="uniprot">72359</id>\r
3448                       <code>TRAHO</code>\r
3449                       <scientific_name>Trachipleistophora hominis</scientific_name>\r
3450                       <common_name>Microsporidian parasite</common_name>\r
3451                       <rank>species</rank>\r
3452                     </taxonomy>\r
3453                   </clade>\r
3454                 </clade>\r
3455               </clade>\r
3456               <clade>\r
3457                 <name>Fonticula &amp; Nucleariidae</name>\r
3458                 <reference doi="10.1093/molbev/msp185">\r
3459                 </reference>\r
3460                 <clade>\r
3461                   <taxonomy>\r
3462                     <id provider="uniprot">691883</id>\r
3463                     <scientific_name>Fonticula alba</scientific_name>\r
3464                     <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>\r
3465                     <rank>species</rank>\r
3466                   </taxonomy>\r
3467                 </clade>\r
3468                 <clade>\r
3469                   <taxonomy>\r
3470                     <id provider="uniprot">154970</id>\r
3471                     <scientific_name>Nuclearia simplex</scientific_name>\r
3472                     <rank>species</rank>\r
3473                   </taxonomy>\r
3474                 </clade>\r
3475               </clade>\r
3476             </clade>\r
3477           </clade>\r
3478           <clade>\r
3479             <name>Amoebozoa</name>\r
3480             <taxonomy>\r
3481               <id provider="uniprot">554915</id>\r
3482               <scientific_name>Amoebozoa</scientific_name>\r
3483             </taxonomy>\r
3484             <clade>\r
3485               <taxonomy>\r
3486                 <id provider="uniprot">33083</id>\r
3487                 <scientific_name>Dictyosteliida</scientific_name>\r
3488                 <common_name>dictyostelid cellular slime molds</common_name>\r
3489                 <rank>order</rank>\r
3490               </taxonomy>\r
3491               <clade>\r
3492                 <name>Dictyostelium</name>\r
3493                 <taxonomy>\r
3494                   <id provider="uniprot">5782</id>\r
3495                   <scientific_name>Dictyostelium</scientific_name>\r
3496                   <rank>genus</rank>\r
3497                 </taxonomy>\r
3498                 <clade>\r
3499                   <taxonomy>\r
3500                     <id provider="uniprot">44689</id>\r
3501                     <code>DICDI</code>\r
3502                     <scientific_name>Dictyostelium discoideum</scientific_name>\r
3503                     <common_name>Slime mold</common_name>\r
3504                     <rank>species</rank>\r
3505                     <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>\r
3506                   </taxonomy>\r
3507                 </clade>\r
3508                 <clade>\r
3509                   <taxonomy>\r
3510                     <id provider="uniprot">5786</id>\r
3511                     <code>DICPU</code>\r
3512                     <scientific_name>Dictyostelium purpureum</scientific_name>\r
3513                     <common_name>Slime mold</common_name>\r
3514                     <rank>species</rank>\r
3515                   </taxonomy>\r
3516                 </clade>\r
3517               </clade>\r
3518               <clade>\r
3519                 <taxonomy>\r
3520                   <id provider="uniprot">13642</id>\r
3521                   <code>POLPA</code>\r
3522                   <scientific_name>Polysphondylium pallidum</scientific_name>\r
3523                   <common_name>Cellular slime mold</common_name>\r
3524                   <rank>species</rank>\r
3525                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>\r
3526                 </taxonomy>\r
3527               </clade>\r
3528             </clade>\r
3529             <clade>\r
3530               <taxonomy>\r
3531                 <id provider="uniprot">5759</id>\r
3532                 <code>ENTHI</code>\r
3533                 <scientific_name>Entamoeba histolytica</scientific_name>\r
3534                 <rank>species</rank>\r
3535               </taxonomy>\r
3536             </clade>\r
3537           </clade>\r
3538         </clade>\r
3539         <clade>\r
3540           <name>Bikonta</name>\r
3541           <reference doi="10.1099/ijs.0.63216-0">\r
3542           </reference>\r
3543           <clade>\r
3544             <name>Plants+HC+SAR megagroup</name>\r
3545             <clade>\r
3546               <name>Plants+HC</name>\r
3547               <clade>\r
3548                 <name>Archaeplastida</name>\r
3549                 <clade>\r
3550                   <taxonomy>\r
3551                     <id provider="uniprot">33090</id>\r
3552                     <scientific_name>Viridiplantae</scientific_name>\r
3553                     <common_name>green plants</common_name>\r
3554                     <rank>kingdom</rank>\r
3555                   </taxonomy>\r
3556                   <clade>\r
3557                     <taxonomy>\r
3558                       <id provider="uniprot">3193</id>\r
3559                       <scientific_name>Embryophyta</scientific_name>\r
3560                     </taxonomy>\r
3561                     <clade>\r
3562                       <taxonomy>\r
3563                         <id provider="uniprot">58023</id>\r
3564                         <scientific_name>Tracheophyta</scientific_name>\r
3565                         <common_name>vascular plants</common_name>\r
3566                       </taxonomy>\r
3567                       <clade>\r
3568                         <taxonomy>\r
3569                           <id provider="uniprot">58024</id>\r
3570                           <scientific_name>Spermatophyta</scientific_name>\r
3571                           <common_name>seed plants</common_name>\r
3572                         </taxonomy>\r
3573                         <clade>\r
3574                           <taxonomy>\r
3575                             <id provider="uniprot">3398</id>\r
3576                             <scientific_name>Magnoliophyta</scientific_name>\r
3577                             <common_name>flowering plants</common_name>\r
3578                             <synonym>Angiospermae</synonym>\r
3579                           </taxonomy>\r
3580                           <clade>\r
3581                             <taxonomy>\r
3582                               <id provider="uniprot">71240</id>\r
3583                               <scientific_name>eudicotyledons</scientific_name>\r
3584                             </taxonomy>\r
3585                             <clade>\r
3586                               <taxonomy>\r
3587                                 <id provider="uniprot">91827</id>\r
3588                                 <scientific_name>core eudicotyledons</scientific_name>\r
3589                               </taxonomy>\r
3590                               <clade>\r
3591                                 <taxonomy>\r
3592                                   <id provider="uniprot">71275</id>\r
3593                                   <scientific_name>rosids</scientific_name>\r
3594                                   <rank>subclass</rank>\r
3595                                 </taxonomy>\r
3596                                 <clade>\r
3597                                   <name>fabids &amp; malvids</name>\r
3598                                   <clade>\r
3599                                     <taxonomy>\r
3600                                       <id provider="uniprot">91835</id>\r
3601                                       <scientific_name>fabids</scientific_name>\r
3602                                     </taxonomy>\r
3603                                     <clade>\r
3604                                       <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
3605                                       <clade>\r
3606                                         <name>Rosales &amp; Cucurbitales</name>\r
3607                                         <clade>\r
3608                                           <taxonomy>\r
3609                                             <id provider="uniprot">3745</id>\r
3610                                             <scientific_name>Rosaceae</scientific_name>\r
3611                                             <rank>family</rank>\r
3612                                           </taxonomy>\r
3613                                           <clade>\r
3614                                             <taxonomy>\r
3615                                               <id provider="uniprot">57918</id>\r
3616                                               <code>FRAVE</code>\r
3617                                               <scientific_name>Fragaria vesca</scientific_name>\r
3618                                               <common_name>Woodland strawberry</common_name>\r
3619                                               <synonym>Fragaria vesca L.</synonym>\r
3620                                               <synonym>European strawberry</synonym>\r
3621                                               <synonym>alpine strawberry</synonym>\r
3622                                               <rank>species</rank>\r
3623                                               <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>\r
3624                                               <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>\r
3625                                             </taxonomy>\r
3626                                           </clade>\r
3627                                           <clade>\r
3628                                             <taxonomy>\r
3629                                               <id provider="uniprot">3760</id>\r
3630                                               <code>PRUPE</code>\r
3631                                               <scientific_name>Prunus persica</scientific_name>\r
3632                                               <common_name>Peach</common_name>\r
3633                                               <synonym>Persica vulgaris</synonym>\r
3634                                               <synonym>Amygdalus persica</synonym>\r
3635                                               <rank>species</rank>\r
3636                                               <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
3637                                             </taxonomy>\r
3638                                           </clade>\r
3639                                         </clade>\r
3640                                         <clade>\r
3641                                           <taxonomy>\r
3642                                             <id provider="uniprot">3659</id>\r
3643                                             <code>CUCSA</code>\r
3644                                             <scientific_name>Cucumis sativus</scientific_name>\r
3645                                             <common_name>Cucumber</common_name>\r
3646                                             <rank>species</rank>\r
3647                                           </taxonomy>\r
3648                                         </clade>\r
3649                                       </clade>\r
3650                                       <clade>\r
3651                                         <taxonomy>\r
3652                                           <id provider="uniprot">3814</id>\r
3653                                           <scientific_name>Papilionoideae</scientific_name>\r
3654                                           <rank>subfamily</rank>\r
3655                                         </taxonomy>\r
3656                                         <clade>\r
3657                                           <taxonomy>\r
3658                                             <id provider="uniprot">3847</id>\r
3659                                             <code>SOYBN</code>\r
3660                                             <scientific_name>Glycine max</scientific_name>\r
3661                                             <authority>cv. Wye</authority>\r
3662                                             <common_name>Soybean</common_name>\r
3663                                             <synonym>Glycine hispida</synonym>\r
3664                                             <rank>species</rank>\r
3665                                           </taxonomy>\r
3666                                         </clade>\r
3667                                         <clade>\r
3668                                           <taxonomy>\r
3669                                             <id provider="uniprot">3880</id>\r
3670                                             <code>MEDTR</code>\r
3671                                             <scientific_name>Medicago truncatula</scientific_name>\r
3672                                             <common_name>Barrel medic</common_name>\r
3673                                             <synonym>Medicago tribuloides</synonym>\r
3674                                             <rank>species</rank>\r
3675                                             <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
3676                                           </taxonomy>\r
3677                                         </clade>\r
3678                                       </clade>\r
3679                                     </clade>\r
3680                                     <clade>\r
3681                                       <taxonomy>\r
3682                                         <id provider="uniprot">3646</id>\r
3683                                         <scientific_name>Malpighiales</scientific_name>\r
3684                                         <rank>order</rank>\r
3685                                       </taxonomy>\r
3686                                       <clade>\r
3687                                         <taxonomy>\r
3688                                           <id provider="uniprot">3977</id>\r
3689                                           <scientific_name>Euphorbiaceae</scientific_name>\r
3690                                           <rank>family</rank>\r
3691                                         </taxonomy>\r
3692                                         <clade>\r
3693                                           <taxonomy>\r
3694                                             <id provider="uniprot">3983</id>\r
3695                                             <code>MANES</code>\r
3696                                             <scientific_name>Manihot esculenta</scientific_name>\r
3697                                             <common_name>Tapioca</common_name>\r
3698                                             <synonym>Jatropha manihot</synonym>\r
3699                                             <rank>species</rank>\r
3700                                             <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
3701                                           </taxonomy>\r
3702                                         </clade>\r
3703                                         <clade>\r
3704                                           <taxonomy>\r
3705                                             <id provider="uniprot">3988</id>\r
3706                                             <code>RICCO</code>\r
3707                                             <scientific_name>Ricinus communis</scientific_name>\r
3708                                             <common_name>Castor bean</common_name>\r
3709                                             <synonym>Ricinus sanguineus</synonym>\r
3710                                             <rank>species</rank>\r
3711                                             <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
3712                                           </taxonomy>\r
3713                                         </clade>\r
3714                                       </clade>\r
3715                                       <clade>\r
3716                                         <taxonomy>\r
3717                                           <id provider="uniprot">3694</id>\r
3718                                           <code>POPTR</code>\r
3719                                           <scientific_name>Populus trichocarpa</scientific_name>\r
3720                                           <common_name>Western balsam poplar</common_name>\r
3721                                           <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
3722                                           <rank>species</rank>\r
3723                                         </taxonomy>\r
3724                                       </clade>\r
3725                                     </clade>\r
3726                                   </clade>\r
3727                                   <clade>\r
3728                                     <taxonomy>\r
3729                                       <id provider="uniprot">91836</id>\r
3730                                       <scientific_name>malvids</scientific_name>\r
3731                                     </taxonomy>\r
3732                                     <clade>\r
3733                                       <name>Brassicales &amp; Sapindales</name>\r
3734                                       <clade>\r
3735                                         <taxonomy>\r
3736                                           <id provider="uniprot">3699</id>\r
3737                                           <scientific_name>Brassicales</scientific_name>\r
3738                                           <rank>order</rank>\r
3739                                         </taxonomy>\r
3740                                         <clade>\r
3741                                           <taxonomy>\r
3742                                             <id provider="uniprot">3700</id>\r
3743                                             <scientific_name>Brassicaceae</scientific_name>\r
3744                                             <rank>family</rank>\r
3745                                           </taxonomy>\r
3746                                           <clade>\r
3747                                             <taxonomy>\r
3748                                               <id provider="uniprot">3701</id>\r
3749                                               <scientific_name>Arabidopsis</scientific_name>\r
3750                                               <rank>genus</rank>\r
3751                                             </taxonomy>\r
3752                                             <clade>\r
3753                                               <taxonomy>\r
3754                                                 <id provider="uniprot">59689</id>\r
3755                                                 <code>ARALY</code>\r
3756                                                 <scientific_name>Arabidopsis lyrata</scientific_name>\r
3757                                                 <common_name>Lyre-leaved rock-cress</common_name>\r
3758                                                 <synonym>Arabis lyrata</synonym>\r
3759                                                 <rank>species</rank>\r
3760                                               </taxonomy>\r
3761                                             </clade>\r
3762                                             <clade>\r
3763                                               <taxonomy>\r
3764                                                 <id provider="uniprot">3702</id>\r
3765                                                 <code>ARATH</code>\r
3766                                                 <scientific_name>Arabidopsis thaliana</scientific_name>\r
3767                                                 <common_name>Mouse-ear cress</common_name>\r
3768                                                 <rank>species</rank>\r
3769                                               </taxonomy>\r
3770                                             </clade>\r
3771                                           </clade>\r
3772                                           <clade>\r
3773                                             <taxonomy>\r
3774                                               <id provider="uniprot">98038</id>\r
3775                                               <code>THEHA</code>\r
3776                                               <scientific_name>Thellungiella halophila</scientific_name>\r
3777                                               <common_name>Salt cress</common_name>\r
3778                                               <rank>species</rank>\r
3779                                               <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>\r
3780                                             </taxonomy>\r
3781                                           </clade>\r
3782                                         </clade>\r
3783                                         <clade>\r
3784                                           <taxonomy>\r
3785                                             <id provider="uniprot">3649</id>\r
3786                                             <code>CARPA</code>\r
3787                                             <scientific_name>Carica papaya</scientific_name>\r
3788                                             <common_name>Papaya</common_name>\r
3789                                             <rank>species</rank>\r
3790                                             <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
3791                                             <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
3792                                           </taxonomy>\r
3793                                         </clade>\r
3794                                       </clade>\r
3795                                       <clade>\r
3796                                         <taxonomy>\r
3797                                           <id provider="uniprot">2706</id>\r
3798                                           <scientific_name>Citrus</scientific_name>\r
3799                                           <rank>genus</rank>\r
3800                                         </taxonomy>\r
3801                                         <clade>\r
3802                                           <taxonomy>\r
3803                                             <id provider="uniprot">85681</id>\r
3804                                             <code>CCLXX</code>\r
3805                                             <scientific_name>Citrus clementina</scientific_name>\r
3806                                             <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
3807                                             <rank>species</rank>\r
3808                                             <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>\r
3809                                           </taxonomy>\r
3810                                         </clade>\r
3811                                         <clade>\r
3812                                           <taxonomy>\r
3813                                             <id provider="uniprot">2711</id>\r
3814                                             <code>CITSI</code>\r
3815                                             <scientific_name>Citrus sinensis</scientific_name>\r
3816                                             <common_name>Sweet orange</common_name>\r
3817                                             <synonym>Citrus x sinensis</synonym>\r
3818                                             <synonym>Citrus aurantium var. sinensis</synonym>\r
3819                                             <rank>species</rank>\r
3820                                             <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
3821                                           </taxonomy>\r
3822                                         </clade>\r
3823                                       </clade>\r
3824                                     </clade>\r
3825                                     <clade>\r
3826                                       <taxonomy>\r
3827                                         <id provider="uniprot">71139</id>\r
3828                                         <code>EUCGR</code>\r
3829                                         <scientific_name>Eucalyptus grandis</scientific_name>\r
3830                                         <common_name>Flooded gum</common_name>\r
3831                                         <rank>species</rank>\r
3832                                         <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
3833                                       </taxonomy>\r
3834                                     </clade>\r
3835                                   </clade>\r
3836                                 </clade>\r
3837                                 <clade>\r
3838                                   <taxonomy>\r
3839                                     <id provider="eol">582304</id>\r
3840                                     <code>VITVI</code>\r
3841                                     <scientific_name>Vitis vinifera</scientific_name>\r
3842                                     <common_name>Grape</common_name>\r
3843                                     <rank>species</rank>\r
3844                                   </taxonomy>\r
3845                                 </clade>\r
3846                               </clade>\r
3847                               <clade>\r
3848                                 <taxonomy>\r
3849                                   <id provider="uniprot">91888</id>\r
3850                                   <scientific_name>lamiids</scientific_name>\r
3851                                 </taxonomy>\r
3852                                 <clade>\r
3853                                   <taxonomy>\r
3854                                     <id provider="uniprot">4070</id>\r
3855                                     <scientific_name>Solanaceae</scientific_name>\r
3856                                     <rank>family</rank>\r
3857                                   </taxonomy>\r
3858                                   <clade>\r
3859                                     <taxonomy>\r
3860                                       <id provider="uniprot">4107</id>\r
3861                                       <scientific_name>Solanum</scientific_name>\r
3862                                       <rank>genus</rank>\r
3863                                     </taxonomy>\r
3864                                     <clade>\r
3865                                       <taxonomy>\r
3866                                         <id provider="uniprot">49274</id>\r
3867                                         <scientific_name>Lycopersicon</scientific_name>\r
3868                                         <rank>subgenus</rank>\r
3869                                       </taxonomy>\r
3870                                       <clade>\r
3871                                         <taxonomy>\r
3872                                           <id provider="uniprot">4081</id>\r
3873                                           <code>SOLLC</code>\r
3874                                           <scientific_name>Solanum lycopersicum</scientific_name>\r
3875                                           <common_name>Tomato</common_name>\r
3876                                           <synonym>Lycopersicon esculentum</synonym>\r
3877                                           <rank>species</rank>\r
3878                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
3879                                         </taxonomy>\r
3880                                       </clade>\r
3881                                       <clade>\r
3882                                         <taxonomy>\r
3883                                           <id provider="uniprot">4084</id>\r
3884                                           <code>SOLPI</code>\r
3885                                           <scientific_name>Solanum pimpinellifolium</scientific_name>\r
3886                                           <common_name>Currant tomato</common_name>\r
3887                                           <synonym>Lycopersicon pimpinellifolium</synonym>\r
3888                                           <rank>species</rank>\r
3889                                           <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>\r
3890                                         </taxonomy>\r
3891                                       </clade>\r
3892                                     </clade>\r
3893                                     <clade>\r
3894                                       <taxonomy>\r
3895                                         <id provider="uniprot">4113</id>\r
3896                                         <code>SOLTU</code>\r
3897                                         <scientific_name>Solanum tuberosum</scientific_name>\r
3898                                         <common_name>Potato</common_name>\r
3899                                         <rank>species</rank>\r
3900                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>\r
3901                                       </taxonomy>\r
3902                                     </clade>\r
3903                                   </clade>\r
3904                                   <clade>\r
3905                                     <taxonomy>\r
3906                                       <id provider="uniprot">4097</id>\r
3907                                       <code>TOBAC</code>\r
3908                                       <scientific_name>Nicotiana tabacum</scientific_name>\r
3909                                       <common_name>Common tobacco</common_name>\r
3910                                       <rank>species</rank>\r
3911                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
3912                                     </taxonomy>\r
3913                                   </clade>\r
3914                                 </clade>\r
3915                                 <clade>\r
3916                                   <taxonomy>\r
3917                                     <id provider="uniprot">4155</id>\r
3918                                     <code>MIMGU</code>\r
3919                                     <scientific_name>Mimulus guttatus</scientific_name>\r
3920                                     <common_name>Yellow monkey flower</common_name>\r
3921                                     <synonym>Yellow monkey flower</synonym>\r
3922                                     <rank>species</rank>\r
3923                                   </taxonomy>\r
3924                                 </clade>\r
3925                               </clade>\r
3926                             </clade>\r
3927                             <clade>\r
3928                               <taxonomy>\r
3929                                 <id provider="uniprot">218851</id>\r
3930                                 <code>AQUCA</code>\r
3931                                 <scientific_name>Aquilegia caerulea</scientific_name>\r
3932                                 <authority>E.James</authority>\r
3933                                 <common_name>Rocky mountain columbine</common_name>\r
3934                                 <synonym>Aquilegia coerulea</synonym>\r
3935                                 <rank>species</rank>\r
3936                                 <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>\r
3937                               </taxonomy>\r
3938                             </clade>\r
3939                           </clade>\r
3940                           <clade>\r
3941                             <taxonomy>\r
3942                               <id provider="uniprot">4447</id>\r
3943                               <scientific_name>Liliopsida</scientific_name>\r
3944                               <common_name>monocots</common_name>\r
3945                               <synonym>Monocotyledoneae</synonym>\r
3946                               <rank>class</rank>\r
3947                             </taxonomy>\r
3948                             <clade>\r
3949                               <taxonomy>\r
3950                                 <id provider="uniprot">4479</id>\r
3951                                 <scientific_name>Poaceae</scientific_name>\r
3952                                 <common_name>grass family</common_name>\r
3953                                 <synonym>Gramineae</synonym>\r
3954                                 <rank>family</rank>\r
3955                               </taxonomy>\r
3956                               <clade>\r
3957                                 <taxonomy>\r
3958                                   <id provider="uniprot">147369</id>\r
3959                                   <scientific_name>Panicoideae</scientific_name>\r
3960                                   <authority>Link, 1827</authority>\r
3961                                   <synonym>Centothecoideae</synonym>\r
3962                                   <rank>subfamily</rank>\r
3963                                 </taxonomy>\r
3964                                 <clade>\r
3965                                   <taxonomy>\r
3966                                     <id provider="uniprot">147429</id>\r
3967                                     <scientific_name>Andropogoneae</scientific_name>\r
3968                                     <authority>Dumort., 1824</authority>\r
3969                                     <rank>tribe</rank>\r
3970                                   </taxonomy>\r
3971                                   <clade>\r
3972                                     <taxonomy>\r
3973                                       <id provider="uniprot">4558</id>\r
3974                                       <code>SORBI</code>\r
3975                                       <scientific_name>Sorghum bicolor</scientific_name>\r
3976                                       <common_name>Sorghum</common_name>\r
3977                                       <synonym>Sorghum vulgare</synonym>\r
3978                                       <rank>species</rank>\r
3979                                     </taxonomy>\r
3980                                   </clade>\r
3981                                   <clade>\r
3982                                     <taxonomy>\r
3983                                       <id provider="uniprot">4577</id>\r
3984                                       <code>MAIZE</code>\r
3985                                       <scientific_name>Zea mays</scientific_name>\r
3986                                       <common_name>Maize</common_name>\r
3987                                       <rank>species</rank>\r
3988                                     </taxonomy>\r
3989                                   </clade>\r
3990                                 </clade>\r
3991                                 <clade>\r
3992                                   <taxonomy>\r
3993                                     <id provider="uniprot">147428</id>\r
3994                                     <scientific_name>Paniceae</scientific_name>\r
3995                                     <rank>tribe</rank>\r
3996                                   </taxonomy>\r
3997                                   <clade>\r
3998                                     <taxonomy>\r
3999                                       <id provider="uniprot">38727</id>\r
4000                                       <code>PANVG</code>\r
4001                                       <scientific_name>Panicum virgatum</scientific_name>\r
4002                                       <common_name>switchgrass</common_name>\r
4003                                       <rank>species</rank>\r
4004                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
4005                                     </taxonomy>\r
4006                                   </clade>\r
4007                                   <clade>\r
4008                                     <taxonomy>\r
4009                                       <id provider="uniprot">4555</id>\r
4010                                       <code>SETIT</code>\r
4011                                       <scientific_name>Setaria italica</scientific_name>\r
4012                                       <common_name>Foxtail millet</common_name>\r
4013                                       <synonym>Panicum italicum</synonym>\r
4014                                       <rank>species</rank>\r
4015                                       <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
4016                                     </taxonomy>\r
4017                                   </clade>\r
4018                                 </clade>\r
4019                               </clade>\r
4020                               <clade>\r
4021                                 <taxonomy>\r
4022                                   <id provider="uniprot">359160</id>\r
4023                                   <scientific_name>BEP clade</scientific_name>\r
4024                                 </taxonomy>\r
4025                                 <clade>\r
4026                                   <taxonomy>\r
4027                                     <id provider="uniprot">4527</id>\r
4028                                     <scientific_name>Oryza</scientific_name>\r
4029                                     <rank>genus</rank>\r
4030                                   </taxonomy>\r
4031                                   <clade>\r
4032                                     <taxonomy>\r
4033                                       <id provider="uniprot">4530</id>\r
4034                                       <code>ORYSA</code>\r
4035                                       <scientific_name>Oryza sativa</scientific_name>\r
4036                                       <common_name>Rice</common_name>\r
4037                                       <rank>species</rank>\r
4038                                     </taxonomy>\r
4039                                   </clade>\r
4040                                   <clade>\r
4041                                     <taxonomy>\r
4042                                       <id provider="uniprot">39947</id>\r
4043                                       <code>ORYSJ</code>\r
4044                                       <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
4045                                       <common_name>Rice</common_name>\r
4046                                     </taxonomy>\r
4047                                   </clade>\r
4048                                 </clade>\r
4049                                 <clade>\r
4050                                   <taxonomy>\r
4051                                     <id provider="uniprot">15368</id>\r
4052                                     <code>BRADI</code>\r
4053                                     <scientific_name>Brachypodium distachyon</scientific_name>\r
4054                                     <common_name>Purple false brome</common_name>\r
4055                                     <synonym>Trachynia distachya</synonym>\r
4056                                     <rank>species</rank>\r
4057                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>\r
4058                                   </taxonomy>\r
4059                                 </clade>\r
4060                               </clade>\r
4061                             </clade>\r
4062                             <clade>\r
4063                               <taxonomy>\r
4064                                 <id provider="uniprot">4641</id>\r
4065                                 <code>MUSAC</code>\r
4066                                 <scientific_name>Musa acuminata</scientific_name>\r
4067                                 <common_name>Banana</common_name>\r
4068                                 <synonym>Musa cavendishii</synonym>\r
4069                                 <rank>species</rank>\r
4070                                 <uri>http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg</uri>\r
4071                               </taxonomy>\r
4072                             </clade>\r
4073                           </clade>\r
4074                         </clade>\r
4075                         <clade>\r
4076                           <taxonomy>\r
4077                             <id provider="uniprot">3329</id>\r
4078                             <code>PICAB</code>\r
4079                             <scientific_name>Picea abies</scientific_name>\r
4080                             <authority>H.Karst</authority>\r
4081                             <common_name>Norway spruce</common_name>\r
4082                             <synonym>Picea excelsa</synonym>\r
4083                             <rank>species</rank>\r
4084                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>\r
4085                           </taxonomy>\r
4086                         </clade>\r
4087                       </clade>\r
4088                       <clade>\r
4089                         <taxonomy>\r
4090                           <id provider="uniprot">88036</id>\r
4091                           <code>SELML</code>\r
4092                           <scientific_name>Selaginella moellendorffii</scientific_name>\r
4093                           <authority>Hieron</authority>\r
4094                           <common_name>Spikemoss</common_name>\r
4095                           <rank>species</rank>\r
4096                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>\r
4097                         </taxonomy>\r
4098                       </clade>\r
4099                     </clade>\r
4100                     <clade>\r
4101                       <taxonomy>\r
4102                         <id provider="uniprot">145481</id>\r
4103                         <code>PHYPA</code>\r
4104                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
4105                         <common_name>Moss</common_name>\r
4106                         <rank>subspecies</rank>\r
4107                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>\r
4108                       </taxonomy>\r
4109                     </clade>\r
4110                   </clade>\r
4111                   <clade>\r
4112                     <taxonomy>\r
4113                       <id provider="uniprot">3041</id>\r
4114                       <scientific_name>Chlorophyta</scientific_name>\r
4115                       <rank>phylum</rank>\r
4116                     </taxonomy>\r
4117                     <clade>\r
4118                       <taxonomy>\r
4119                         <id provider="uniprot">13792</id>\r
4120                         <scientific_name>Mamiellales</scientific_name>\r
4121                         <rank>order</rank>\r
4122                       </taxonomy>\r
4123                       <clade>\r
4124                         <taxonomy>\r
4125                           <id provider="uniprot">70447</id>\r
4126                           <scientific_name>Ostreococcus</scientific_name>\r
4127                           <rank>genus</rank>\r
4128                         </taxonomy>\r
4129                         <clade>\r
4130                           <taxonomy>\r
4131                             <id provider="uniprot">436017</id>\r
4132                             <code>OSTLU</code>\r
4133                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
4134                           </taxonomy>\r
4135                         </clade>\r
4136                         <clade>\r
4137                           <taxonomy>\r
4138                             <id provider="uniprot">385169</id>\r
4139                             <code>ORCXX</code>\r
4140                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>\r
4141                             <rank>species</rank>\r
4142                           </taxonomy>\r
4143                         </clade>\r
4144                         <clade>\r
4145                           <taxonomy>\r
4146                             <id provider="uniprot">70448</id>\r
4147                             <code>OSTTA</code>\r
4148                             <scientific_name>Ostreococcus tauri</scientific_name>\r
4149                             <rank>species</rank>\r
4150                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>\r
4151                           </taxonomy>\r
4152                         </clade>\r
4153                       </clade>\r
4154                       <clade>\r
4155                         <taxonomy>\r
4156                           <id provider="uniprot">38832</id>\r
4157                           <scientific_name>Micromonas</scientific_name>\r
4158                           <rank>genus</rank>\r
4159                         </taxonomy>\r
4160                         <clade>\r
4161                           <taxonomy>\r
4162                             <id provider="uniprot">564608</id>\r
4163                             <code>MICPC</code>\r
4164                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
4165                             <common_name>Picoplanktonic green alga</common_name>\r
4166                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>\r
4167                           </taxonomy>\r
4168                         </clade>\r
4169                         <clade>\r
4170                           <taxonomy>\r
4171                             <id provider="uniprot">296587</id>\r
4172                             <code>MICSR</code>\r
4173                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
4174                             <common_name>Picoplanktonic green alga</common_name>\r
4175                             <synonym>Micromonas sp. RCC299</synonym>\r
4176                             <rank>species</rank>\r
4177                           </taxonomy>\r
4178                         </clade>\r
4179                       </clade>\r
4180                     </clade>\r
4181                     <clade>\r
4182                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
4183                       <clade>\r
4184                         <taxonomy>\r
4185                           <id provider="uniprot">75966</id>\r
4186                           <scientific_name>Trebouxiophyceae</scientific_name>\r
4187                           <rank>class</rank>\r
4188                         </taxonomy>\r
4189                         <clade>\r
4190                           <taxonomy>\r
4191                             <id provider="uniprot">763042</id>\r
4192                             <code>ASCXX</code>\r
4193                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
4194                             <rank>species</rank>\r
4195                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
4196                           </taxonomy>\r
4197                         </clade>\r
4198                         <clade>\r
4199                           <taxonomy>\r
4200                             <id provider="uniprot">554065</id>\r
4201                             <code>CHLVA</code>\r
4202                             <scientific_name>Chlorella variabilis</scientific_name>\r
4203                             <authority>Shihira &amp; Krauss 1965</authority>\r
4204                             <common_name>Green alga</common_name>\r
4205                             <synonym>Chlorella sp. NC64A</synonym>\r
4206                             <synonym>Chlorella sp. Bnd1-ZK</synonym>\r
4207                             <rank>species</rank>\r
4208                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>\r
4209                           </taxonomy>\r
4210                         </clade>\r
4211                         <clade>\r
4212                           <taxonomy>\r
4213                             <id provider="uniprot">574566</id>\r
4214                             <code>CSUXX</code>\r
4215                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>\r
4216                             <synonym>Chlorella vulgaris C-169</synonym>\r
4217                             <synonym>Coccomyxa sp. C-169</synonym>\r
4218                             <rank>species</rank>\r
4219                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>\r
4220                           </taxonomy>\r
4221                         </clade>\r
4222                       </clade>\r
4223                       <clade>\r
4224                         <taxonomy>\r
4225                           <id provider="uniprot">3042</id>\r
4226                           <scientific_name>Chlamydomonadales</scientific_name>\r
4227                           <rank>order</rank>\r
4228                         </taxonomy>\r
4229                         <clade>\r
4230                           <taxonomy>\r
4231                             <id provider="uniprot">3055</id>\r
4232                             <code>CHLRE</code>\r
4233                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
4234                             <synonym>Chlamydomonas smithii</synonym>\r
4235                             <rank>species</rank>\r
4236                           </taxonomy>\r
4237                         </clade>\r
4238                         <clade>\r
4239                           <taxonomy>\r
4240                             <id provider="uniprot">3067</id>\r
4241                             <code>VOLCA</code>\r
4242                             <scientific_name>Volvox carteri</scientific_name>\r
4243                             <common_name>Green alga</common_name>\r
4244                             <rank>species</rank>\r
4245                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>\r
4246                           </taxonomy>\r
4247                         </clade>\r
4248                       </clade>\r
4249                     </clade>\r
4250                   </clade>\r
4251                 </clade>\r
4252                 <clade>\r
4253                   <taxonomy>\r
4254                     <id provider="uniprot">2763</id>\r
4255                     <scientific_name>Rhodophyta</scientific_name>\r
4256                     <common_name>red algae</common_name>\r
4257                   </taxonomy>\r
4258                   <clade>\r
4259                     <taxonomy>\r
4260                       <id provider="uniprot">265316</id>\r
4261                       <scientific_name>Cyanidiaceae</scientific_name>\r
4262                       <rank>family</rank>\r
4263                     </taxonomy>\r
4264                     <clade>\r
4265                       <taxonomy>\r
4266                         <id provider="uniprot">45157</id>\r
4267                         <code>CYAME</code>\r
4268                         <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
4269                         <common_name>Red alga</common_name>\r
4270                         <rank>species</rank>\r
4271                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>\r
4272                       </taxonomy>\r
4273                     </clade>\r
4274                     <clade>\r
4275                       <taxonomy>\r
4276                         <id provider="uniprot">130081</id>\r
4277                         <code>GALSU</code>\r
4278                         <scientific_name>Galdieria sulphuraria</scientific_name>\r
4279                         <common_name>Red alga</common_name>\r
4280                         <rank>species</rank>\r
4281                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>\r
4282                       </taxonomy>\r
4283                     </clade>\r
4284                   </clade>\r
4285                   <clade>\r
4286                     <taxonomy>\r
4287                       <id provider="uniprot">2769</id>\r
4288                       <code>CHOCR</code>\r
4289                       <scientific_name>Chondrus crispus</scientific_name>\r
4290                       <common_name>Carragheen moss</common_name>\r
4291                       <synonym>Irish moss</synonym>\r
4292                       <rank>species</rank>\r
4293                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>\r
4294                     </taxonomy>\r
4295                   </clade>\r
4296                 </clade>\r
4297                 <clade>\r
4298                   <taxonomy>\r
4299                     <id provider="uniprot">38254</id>\r
4300                     <scientific_name>Glaucocystophyceae</scientific_name>\r
4301                     <synonym>Glaucophyta</synonym>\r
4302                     <rank>class</rank>\r
4303                   </taxonomy>\r
4304                   <clade>\r
4305                     <taxonomy>\r
4306                       <id provider="uniprot">2762</id>\r
4307                       <code>CYAPA</code>\r
4308                       <scientific_name>Cyanophora paradoxa</scientific_name>\r
4309                       <rank>species</rank>\r
4310                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>\r
4311                     </taxonomy>\r
4312                   </clade>\r
4313                   <clade>\r
4314                     <taxonomy>\r
4315                       <id provider="uniprot">38271</id>\r
4316                       <scientific_name>Glaucocystis nostochinearum</scientific_name>\r
4317                       <rank>species</rank>\r
4318                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>\r
4319                     </taxonomy>\r
4320                   </clade>\r
4321                 </clade>\r
4322               </clade>\r
4323               <clade>\r
4324                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>\r
4325                 <clade>\r
4326                   <taxonomy>\r
4327                     <id provider="uniprot">2903</id>\r
4328                     <code>EMIHU</code>\r
4329                     <scientific_name>Emiliania huxleyi</scientific_name>\r
4330                     <synonym>Pontosphaera huxleyi</synonym>\r
4331                     <rank>species</rank>\r
4332                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>\r
4333                   </taxonomy>\r
4334                 </clade>\r
4335                 <clade>\r
4336                   <taxonomy>\r
4337                     <id provider="uniprot">55529</id>\r
4338                     <code>GUITH</code>\r
4339                     <scientific_name>Guillardia theta</scientific_name>\r
4340                     <synonym>Cryptomonas phi</synonym>\r
4341                     <rank>species</rank>\r
4342                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>\r
4343                   </taxonomy>\r
4344                   <reference doi="10.1016/j.cub.2007.03.069">\r
4345                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>\r
4346                   </reference>\r
4347                   <reference>\r
4348                   </reference>\r
4349                 </clade>\r
4350               </clade>\r
4351             </clade>\r
4352             <clade>\r
4353               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>\r
4354               <reference doi="10.1186/1471-2148-10-377">\r
4355                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>\r
4356               </reference>\r
4357               <reference>\r
4358               </reference>\r
4359               <clade>\r
4360                 <name>Stramenopiles &amp; Alveolata</name>\r
4361                 <clade>\r
4362                   <taxonomy>\r
4363                     <id provider="uniprot">33630</id>\r
4364                     <scientific_name>Alveolata</scientific_name>\r
4365                     <rank>superphylum</rank>\r
4366                   </taxonomy>\r
4367                   <clade>\r
4368                     <name>Apicomplexa &amp; Dinophyceae</name>\r
4369                     <clade>\r
4370                       <taxonomy>\r
4371                         <id provider="uniprot">5794</id>\r
4372                         <scientific_name>Apicomplexa</scientific_name>\r
4373                         <rank>phylum</rank>\r
4374                       </taxonomy>\r
4375                       <reference doi="10.1101/gr.083386.108">\r
4376                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>\r
4377                       </reference>\r
4378                       <reference>\r
4379                       </reference>\r
4380                       <clade>\r
4381                         <name>Aconoidasida &amp; Coccidia</name>\r
4382                         <clade>\r
4383                           <taxonomy>\r
4384                             <id provider="uniprot">422676</id>\r
4385                             <scientific_name>Aconoidasida</scientific_name>\r
4386                             <authority>Mehlhorn et al. 1980</authority>\r
4387                             <synonym>Hematozoa</synonym>\r
4388                             <rank>class</rank>\r
4389                           </taxonomy>\r
4390                           <clade>\r
4391                             <taxonomy>\r
4392                               <id provider="uniprot">5820</id>\r
4393                               <scientific_name>Plasmodium</scientific_name>\r
4394                               <rank>genus</rank>\r
4395                             </taxonomy>\r
4396                             <clade>\r
4397                               <taxonomy>\r
4398                                 <id provider="uniprot">5825</id>\r
4399                                 <code>PLACH</code>\r
4400                                 <scientific_name>Plasmodium chabaudi</scientific_name>\r
4401                                 <rank>species</rank>\r
4402                               </taxonomy>\r
4403                             </clade>\r
4404                             <clade>\r
4405                               <taxonomy>\r
4406                                 <id provider="uniprot">36329</id>\r
4407                                 <code>PLAF7</code>\r
4408                                 <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>\r
4409                               </taxonomy>\r
4410                             </clade>\r
4411                             <clade>\r
4412                               <taxonomy>\r
4413                                 <id provider="uniprot">73239</id>\r
4414                                 <code>PLAYO</code>\r
4415                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
4416                                 <rank>subspecies</rank>\r
4417                               </taxonomy>\r
4418                             </clade>\r
4419                             <clade>\r
4420                               <taxonomy>\r
4421                                 <id provider="uniprot">126793</id>\r
4422                                 <code>PLAVS</code>\r
4423                                 <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>\r
4424                               </taxonomy>\r
4425                             </clade>\r
4426                           </clade>\r
4427                           <clade>\r
4428                             <taxonomy>\r
4429                               <id provider="uniprot">5863</id>\r
4430                               <scientific_name>Piroplasmida</scientific_name>\r
4431                               <common_name>Piroplasmids</common_name>\r
4432                               <rank>order</rank>\r
4433                             </taxonomy>\r
4434                             <clade>\r
4435                               <name>Theileria</name>\r
4436                               <taxonomy>\r
4437                                 <id provider="uniprot">5873</id>\r
4438                                 <scientific_name>Theileria</scientific_name>\r
4439                                 <rank>genus</rank>\r
4440                               </taxonomy>\r
4441                               <clade>\r
4442                                 <taxonomy>\r
4443                                   <id provider="uniprot">5874</id>\r
4444                                   <code>THEAN</code>\r
4445                                   <scientific_name>Theileria annulata</scientific_name>\r
4446                                   <rank>species</rank>\r
4447                                 </taxonomy>\r
4448                               </clade>\r
4449                               <clade>\r
4450                                 <taxonomy>\r
4451                                   <id provider="uniprot">5875</id>\r
4452                                   <code>THEPA</code>\r
4453                                   <scientific_name>Theileria parva</scientific_name>\r
4454                                   <common_name>East coast fever infection agent</common_name>\r
4455                                   <rank>species</rank>\r
4456                                 </taxonomy>\r
4457                               </clade>\r
4458                             </clade>\r
4459                             <clade>\r
4460                               <taxonomy>\r
4461                                 <id provider="uniprot">5865</id>\r
4462                                 <code>BABBO</code>\r
4463                                 <scientific_name>Babesia bovis</scientific_name>\r
4464                                 <rank>species</rank>\r
4465                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>\r
4466                               </taxonomy>\r
4467                             </clade>\r
4468                           </clade>\r
4469                         </clade>\r
4470                         <clade>\r
4471                           <taxonomy>\r
4472                             <id provider="uniprot">5796</id>\r
4473                             <scientific_name>Coccidia</scientific_name>\r
4474                             <common_name>coccidians</common_name>\r
4475                             <rank>subclass</rank>\r
4476                           </taxonomy>\r
4477                           <reference doi="10.1093/molbev/msn213">\r
4478                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
4479                           </reference>\r
4480                           <reference>\r
4481                           </reference>\r
4482                           <clade>\r
4483                             <taxonomy>\r
4484                               <id provider="uniprot">5802</id>\r
4485                               <code>EIMTE</code>\r
4486                               <scientific_name>Eimeria tenella</scientific_name>\r
4487                               <common_name>Coccidian parasite</common_name>\r
4488                               <rank>species</rank>\r
4489                               <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
4490                             </taxonomy>\r
4491                           </clade>\r
4492                           <clade>\r
4493                             <taxonomy>\r
4494                               <id provider="uniprot">5811</id>\r
4495                               <code>TOXGO</code>\r
4496                               <scientific_name>Toxoplasma gondii</scientific_name>\r
4497                               <rank>species</rank>\r
4498                             </taxonomy>\r
4499                           </clade>\r
4500                         </clade>\r
4501                       </clade>\r
4502                       <clade>\r
4503                         <taxonomy>\r
4504                           <id provider="uniprot">5806</id>\r
4505                           <scientific_name>Cryptosporidium</scientific_name>\r
4506                           <rank>genus</rank>\r
4507                         </taxonomy>\r
4508                         <clade>\r
4509                           <taxonomy>\r
4510                             <id provider="uniprot">237895</id>\r
4511                             <code>CRYHO</code>\r
4512                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
4513                             <rank>species</rank>\r
4514                           </taxonomy>\r
4515                         </clade>\r
4516                         <clade>\r
4517                           <taxonomy>\r
4518                             <id provider="uniprot">5807</id>\r
4519                             <code>CRYPV</code>\r
4520                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
4521                             <rank>species</rank>\r
4522                           </taxonomy>\r
4523                         </clade>\r
4524                         <clade>\r
4525                           <taxonomy>\r
4526                             <id provider="uniprot">353152</id>\r
4527                             <code>CRYPI</code>\r
4528                             <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>\r
4529                           </taxonomy>\r
4530                         </clade>\r
4531                       </clade>\r
4532                     </clade>\r
4533                     <clade>\r
4534                       <taxonomy>\r
4535                         <id provider="uniprot">2864</id>\r
4536                         <scientific_name>Dinophyceae</scientific_name>\r
4537                         <authority>Fritsch, 1927</authority>\r
4538                         <common_name>dinoflagellates</common_name>\r
4539                         <synonym>Chromophyta</synonym>\r
4540                         <synonym>Dinoflagellata</synonym>\r
4541                         <synonym>Pyrrophyta</synonym>\r
4542                         <rank>class</rank>\r
4543                       </taxonomy>\r
4544                       <clade>\r
4545                         <taxonomy>\r
4546                           <id provider="uniprot">2866</id>\r
4547                           <code>CRYCO</code>\r
4548                           <scientific_name>Crypthecodinium cohnii</scientific_name>\r
4549                           <common_name>Dinoflagellate</common_name>\r
4550                           <rank>species</rank>\r
4551                           <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>\r
4552                         </taxonomy>\r
4553                       </clade>\r
4554                       <clade>\r
4555                         <taxonomy>\r
4556                           <id provider="uniprot">2923</id>\r
4557                           <code>THOHE</code>\r
4558                           <scientific_name>Thoracosphaera heimii</scientific_name>\r
4559                           <common_name>Dinoflagellate</common_name>\r
4560                           <rank>species</rank>\r
4561                           <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>\r
4562                         </taxonomy>\r
4563                       </clade>\r
4564                     </clade>\r
4565                   </clade>\r
4566                   <clade>\r
4567                     <taxonomy>\r
4568                       <id provider="uniprot">5878</id>\r
4569                       <scientific_name>Ciliophora</scientific_name>\r
4570                       <common_name>ciliates</common_name>\r
4571                       <rank>phylum</rank>\r
4572                     </taxonomy>\r
4573                     <clade>\r
4574                       <taxonomy>\r
4575                         <id provider="uniprot">431838</id>\r
4576                         <scientific_name>Intramacronucleata</scientific_name>\r
4577                         <rank>subphylum</rank>\r
4578                       </taxonomy>\r
4579                       <clade>\r
4580                         <taxonomy>\r
4581                           <id provider="uniprot">6020</id>\r
4582                           <scientific_name>Oligohymenophorea</scientific_name>\r
4583                           <rank>class</rank>\r
4584                         </taxonomy>\r
4585                         <clade>\r
4586                           <taxonomy>\r
4587                             <id provider="uniprot">5888</id>\r
4588                             <code>PARTE</code>\r
4589                             <scientific_name>Paramecium tetraurelia</scientific_name>\r
4590                             <rank>species</rank>\r
4591                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>\r
4592                           </taxonomy>\r
4593                         </clade>\r
4594                         <clade>\r
4595                           <taxonomy>\r
4596                             <id provider="uniprot">312017</id>\r
4597                             <code>TETTS</code>\r
4598                             <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>\r
4599                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>\r
4600                           </taxonomy>\r
4601                         </clade>\r
4602                       </clade>\r
4603                       <clade>\r
4604                         <taxonomy>\r
4605                           <id provider="uniprot">1172189</id>\r
4606                           <code>OTRXX</code>\r
4607                           <scientific_name>Oxytricha trifallax</scientific_name>\r
4608                           <authority>Stein, 1859</authority>\r
4609                           <rank>species</rank>\r
4610                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>\r
4611                         </taxonomy>\r
4612                       </clade>\r
4613                     </clade>\r
4614                     <clade>\r
4615                       <taxonomy>\r
4616                         <id provider="uniprot">5961</id>\r
4617                         <code>BLEJA</code>\r
4618                         <scientific_name>Blepharisma japonicum</scientific_name>\r
4619                         <rank>species</rank>\r
4620                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>\r
4621                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>\r
4622                       </taxonomy>\r
4623                     </clade>\r
4624                   </clade>\r
4625                 </clade>\r
4626                 <clade>\r
4627                   <taxonomy>\r
4628                     <id provider="uniprot">33634</id>\r
4629                     <scientific_name>Stramenopiles</scientific_name>\r
4630                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>\r
4631                     <synonym>Chromophyta</synonym>\r
4632                     <synonym>heterokonts</synonym>\r
4633                   </taxonomy>\r
4634                   <clade>\r
4635                     <name>Pelagophyceae &amp; Bacillariophyta &amp; Oomycetes</name>\r
4636                     <reference doi="10.1016/j.protis.2008.11.004">\r
4637                       <desc>Seven Gene Phylogeny of Heterokonts</desc>\r
4638                     </reference>\r
4639                     <reference>\r
4640                     </reference>\r
4641                     <clade>\r
4642                       <name>Pelagophyceae &amp; Bacillariophyta</name>\r
4643                       <clade>\r
4644                         <taxonomy>\r
4645                           <id provider="uniprot">2836</id>\r
4646                           <scientific_name>Bacillariophyta</scientific_name>\r
4647                           <common_name>diatoms</common_name>\r
4648                           <rank>phylum</rank>\r
4649                         </taxonomy>\r
4650                         <clade>\r
4651                           <taxonomy>\r
4652                             <id provider="uniprot">33850</id>\r
4653                             <scientific_name>Bacillariophycidae</scientific_name>\r
4654                           </taxonomy>\r
4655                           <clade>\r
4656                             <taxonomy>\r
4657                               <id provider="uniprot">186039</id>\r
4658                               <code>FCYXX</code>\r
4659                               <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
4660                               <authority>Krieger</authority>\r
4661                               <synonym>Nitzschia cylindrus</synonym>\r
4662                               <rank>species</rank>\r
4663                               <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>\r
4664                             </taxonomy>\r
4665                           </clade>\r
4666                           <clade>\r
4667                             <taxonomy>\r
4668                               <id provider="uniprot">2850</id>\r
4669                               <code>PHATR</code>\r
4670                               <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
4671                               <authority>Bohlin</authority>\r
4672                               <rank>species</rank>\r
4673                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>\r
4674                             </taxonomy>\r
4675                           </clade>\r
4676                         </clade>\r
4677                         <clade>\r
4678                           <taxonomy>\r
4679                             <id provider="uniprot">35128</id>\r
4680                             <code>THAPS</code>\r
4681                             <scientific_name>Thalassiosira pseudonana</scientific_name>\r
4682                             <authority>Hasle &amp; Heimdal</authority>\r
4683                             <common_name>Marine diatom</common_name>\r
4684                             <synonym>Cyclotella nana</synonym>\r
4685                             <rank>species</rank>\r
4686                             <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>\r
4687                           </taxonomy>\r
4688                         </clade>\r
4689                       </clade>\r
4690                       <clade>\r
4691                         <taxonomy>\r
4692                           <id provider="uniprot">44056</id>\r
4693                           <code>AURAN</code>\r
4694                           <scientific_name>Aureococcus anophagefferens</scientific_name>\r
4695                           <authority>Hargraves &amp; Sieburth</authority>\r
4696                           <common_name>Harmful bloom alga</common_name>\r
4697                           <rank>species</rank>\r
4698                           <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>\r
4699                         </taxonomy>\r
4700                       </clade>\r
4701                     </clade>\r
4702                     <clade>\r
4703                       <taxonomy>\r
4704                         <id provider="uniprot">4783</id>\r
4705                         <scientific_name>Phytophthora</scientific_name>\r
4706                         <rank>genus</rank>\r
4707                       </taxonomy>\r
4708                       <clade>\r
4709                         <taxonomy>\r
4710                           <id provider="uniprot">4787</id>\r
4711                           <code>PHYIN</code>\r
4712                           <scientific_name>Phytophthora infestans</scientific_name>\r
4713                           <authority>(Mont.) de Bary 1876</authority>\r
4714                           <common_name>Potato late blight fungus</common_name>\r
4715                           <rank>species</rank>\r
4716                           <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>\r
4717                         </taxonomy>\r
4718                       </clade>\r
4719                       <clade>\r
4720                         <taxonomy>\r
4721                           <id provider="uniprot">164328</id>\r
4722                           <code>PHYRM</code>\r
4723                           <scientific_name>Phytophthora ramorum</scientific_name>\r
4724                           <common_name>Sudden oak death agent</common_name>\r
4725                           <rank>species</rank>\r
4726                           <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>\r
4727                         </taxonomy>\r
4728                       </clade>\r
4729                       <clade>\r
4730                         <taxonomy>\r
4731                           <id provider="uniprot">67593</id>\r
4732                           <code>PHYSO</code>\r
4733                           <scientific_name>Phytophthora sojae</scientific_name>\r
4734                           <common_name>Soybean stem and root rot agent</common_name>\r
4735                           <synonym>Phytophthora megasperma f. sp. glycines</synonym>\r
4736                           <rank>species</rank>\r
4737                           <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>\r
4738                         </taxonomy>\r
4739                       </clade>\r
4740                       <clade>\r
4741                         <taxonomy>\r
4742                           <id provider="uniprot">4785</id>\r
4743                           <code>PHYCI</code>\r
4744                           <scientific_name>Phytophthora cinnamomi</scientific_name>\r
4745                           <common_name>Cinnamon fungus</common_name>\r
4746                           <rank>species</rank>\r
4747                           <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>\r
4748                         </taxonomy>\r
4749                       </clade>\r
4750                       <clade>\r
4751                         <taxonomy>\r
4752                           <id provider="uniprot">4784</id>\r
4753                           <code>PHYCP</code>\r
4754                           <scientific_name>Phytophthora capsic</scientific_name>\r
4755                           <rank>species</rank>\r
4756                         </taxonomy>\r
4757                       </clade>\r
4758                     </clade>\r
4759                   </clade>\r
4760                   <clade>\r
4761                     <taxonomy>\r
4762                       <id provider="uniprot">33674</id>\r
4763                       <scientific_name>Thraustochytriaceae</scientific_name>\r
4764                       <synonym>Thraustochytriales</synonym>\r
4765                       <rank>family</rank>\r
4766                     </taxonomy>\r
4767                     <clade>\r
4768                       <taxonomy>\r
4769                         <id provider="uniprot">702273</id>\r
4770                         <code>AKEXX</code>\r
4771                         <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>\r
4772                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>\r
4773                       </taxonomy>\r
4774                     </clade>\r
4775                     <clade>\r
4776                       <taxonomy>\r
4777                         <id provider="uniprot">876976</id>\r
4778                         <code>SAGXX</code>\r
4779                         <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>\r
4780                         <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>\r
4781                       </taxonomy>\r
4782                     </clade>\r
4783                     <clade>\r
4784                       <taxonomy>\r
4785                         <id provider="uniprot">87102</id>\r
4786                         <code>ALIXX</code>\r
4787                         <scientific_name>Aurantiochytrium limacinum</scientific_name>\r
4788                         <synonym>Schizochytrium limacinum</synonym>\r
4789                         <rank>species</rank>\r
4790                         <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>\r
4791                       </taxonomy>\r
4792                     </clade>\r
4793                   </clade>\r
4794                 </clade>\r
4795               </clade>\r
4796               <clade>\r
4797                 <taxonomy>\r
4798                   <id provider="uniprot">543769</id>\r
4799                   <scientific_name>Rhizaria</scientific_name>\r
4800                 </taxonomy>\r
4801                 <clade>\r
4802                   <taxonomy>\r
4803                     <id provider="uniprot">71427</id>\r
4804                     <scientific_name>Allogromia laticollaris</scientific_name>\r
4805                     <rank>species</rank>\r
4806                     <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
4807                   </taxonomy>\r
4808                 </clade>\r
4809                 <clade>\r
4810                   <taxonomy>\r
4811                     <id provider="uniprot">227086</id>\r
4812                     <code>BIGNA</code>\r
4813                     <scientific_name>Bigelowiella natans</scientific_name>\r
4814                     <common_name>Pedinomonas minutissima</common_name>\r
4815                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>\r
4816                     <synonym>Pedinomonas minutissima</synonym>\r
4817                     <rank>species</rank>\r
4818                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>\r
4819                   </taxonomy>\r
4820                 </clade>\r
4821               </clade>\r
4822             </clade>\r
4823           </clade>\r
4824           <clade>\r
4825             <name>Excavata</name>\r
4826             <reference doi="10.1038/nature04546">\r
4827             </reference>\r
4828             <clade>\r
4829               <name>Kinetoplastida &amp; Heterolobosea</name>\r
4830               <clade>\r
4831                 <taxonomy>\r
4832                   <id provider="uniprot">5654</id>\r
4833                   <scientific_name>Trypanosomatidae</scientific_name>\r
4834                   <rank>family</rank>\r
4835                 </taxonomy>\r
4836                 <clade>\r
4837                   <taxonomy>\r
4838                     <id provider="uniprot">5690</id>\r
4839                     <scientific_name>Trypanosoma</scientific_name>\r
4840                     <rank>genus</rank>\r
4841                   </taxonomy>\r
4842                   <clade>\r
4843                     <taxonomy>\r
4844                       <id provider="uniprot">999953</id>\r
4845                       <code>TRYB2</code>\r
4846                       <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>\r
4847                       <rank>strain</rank>\r
4848                     </taxonomy>\r
4849                   </clade>\r
4850                   <clade>\r
4851                     <taxonomy>\r
4852                       <id provider="uniprot">5693</id>\r
4853                       <code>TRYCR</code>\r
4854                       <scientific_name>Trypanosoma cruzi</scientific_name>\r
4855                       <rank>species</rank>\r
4856                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>\r
4857                     </taxonomy>\r
4858                   </clade>\r
4859                 </clade>\r
4860                 <clade>\r
4861                   <taxonomy>\r
4862                     <id provider="uniprot">5664</id>\r
4863                     <code>LEIMA</code>\r
4864                     <scientific_name>Leishmania major</scientific_name>\r
4865                     <rank>species</rank>\r
4866                   </taxonomy>\r
4867                 </clade>\r
4868               </clade>\r
4869               <clade>\r
4870                 <taxonomy>\r
4871                   <id provider="uniprot">5762</id>\r
4872                   <code>NAEGR</code>\r
4873                   <scientific_name>Naegleria gruberi</scientific_name>\r
4874                   <common_name>Amoeba</common_name>\r
4875                   <rank>species</rank>\r
4876                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>\r
4877                 </taxonomy>\r
4878               </clade>\r
4879             </clade>\r
4880             <clade>\r
4881               <name>Metamonada</name>\r
4882               <clade>\r
4883                 <taxonomy>\r
4884                   <id provider="uniprot">184922</id>\r
4885                   <code>GIAIC</code>\r
4886                   <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>\r
4887                   <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>\r
4888                   <synonym>Giardia lamblia</synonym>\r
4889                   <rank>species</rank>\r
4890                 </taxonomy>\r
4891               </clade>\r
4892               <clade>\r
4893                 <taxonomy>\r
4894                   <id provider="uniprot">5722</id>\r
4895                   <code>TRIVA</code>\r
4896                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
4897                   <rank>species</rank>\r
4898                 </taxonomy>\r
4899               </clade>\r
4900             </clade>\r
4901           </clade>\r
4902           <clade>\r
4903             <taxonomy>\r
4904               <id provider="uniprot">554296</id>\r
4905               <scientific_name>Apusozoa</scientific_name>\r
4906             </taxonomy>\r
4907             <reference doi="10.1016/j.protis.2008.06.002">\r
4908               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>\r
4909             </reference>\r
4910             <clade>\r
4911               <taxonomy>\r
4912                 <id provider="uniprot">554453</id>\r
4913                 <scientific_name>Planomonas micra</scientific_name>\r
4914                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>\r
4915                 <synonym>Apusomonadidae sp. micra</synonym>\r
4916                 <rank>species</rank>\r
4917               </taxonomy>\r
4918             </clade>\r
4919             <clade>\r
4920               <taxonomy>\r
4921                 <id provider="uniprot">529818</id>\r
4922                 <code>TTRXX</code>\r
4923                 <scientific_name>Thecamonas trahens</scientific_name>\r
4924                 <authority>Larsen &amp; Patterson 1990</authority>\r
4925                 <synonym>Amastigomonas trahens</synonym>\r
4926                 <rank>species</rank>\r
4927                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>\r
4928               </taxonomy>\r
4929             </clade>\r
4930           </clade>\r
4931         </clade>\r
4932       </clade>\r
4933       <clade>\r
4934         <taxonomy>\r
4935           <id provider="uniprot">2157</id>\r
4936           <scientific_name>Archaea</scientific_name>\r
4937           <rank>superkingdom</rank>\r
4938         </taxonomy>\r
4939         <clade>\r
4940           <name>a_62</name>\r
4941           <clade>\r
4942             <name>a_56</name>\r
4943             <clade>\r
4944               <taxonomy>\r
4945                 <id provider="uniprot">28890</id>\r
4946                 <scientific_name>Euryarchaeota</scientific_name>\r
4947                 <rank>phylum</rank>\r
4948               </taxonomy>\r
4949               <clade>\r
4950                 <name>a_44</name>\r
4951                 <clade>\r
4952                   <name>a_28</name>\r
4953                   <clade>\r
4954                     <name>a_26</name>\r
4955                     <clade>\r
4956                       <taxonomy>\r
4957                         <id provider="uniprot">224756</id>\r
4958                         <scientific_name>Methanomicrobia</scientific_name>\r
4959                         <rank>class</rank>\r
4960                       </taxonomy>\r
4961                       <clade>\r
4962                         <name>a_14</name>\r
4963                         <clade>\r
4964                           <name>a_12</name>\r
4965                           <clade>\r
4966                             <taxonomy>\r
4967                               <id provider="uniprot">2206</id>\r
4968                               <scientific_name>Methanosarcinaceae</scientific_name>\r
4969                               <rank>family</rank>\r
4970                             </taxonomy>\r
4971                             <clade>\r
4972                               <taxonomy>\r
4973                                 <id provider="uniprot">2207</id>\r
4974                                 <scientific_name>Methanosarcina</scientific_name>\r
4975                                 <rank>genus</rank>\r
4976                               </taxonomy>\r
4977                               <clade>\r
4978                                 <name>a_2</name>\r
4979                                 <clade>\r
4980                                   <taxonomy>\r
4981                                     <id provider="uniprot">2214</id>\r
4982                                     <code>METAC</code>\r
4983                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
4984                                     <rank>species</rank>\r
4985                                   </taxonomy>\r
4986                                 </clade>\r
4987                                 <clade>\r
4988                                   <taxonomy>\r
4989                                     <id provider="uniprot">269797</id>\r
4990                                     <code>METBF</code>\r
4991                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
4992                                   </taxonomy>\r
4993                                 </clade>\r
4994                               </clade>\r
4995                               <clade>\r
4996                                 <taxonomy>\r
4997                                   <id provider="uniprot">2209</id>\r
4998                                   <code>METMA</code>\r
4999                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
5000                                   <synonym>Methanosarcina frisia</synonym>\r
5001                                   <rank>species</rank>\r
5002                                 </taxonomy>\r
5003                               </clade>\r
5004                             </clade>\r
5005                             <clade>\r
5006                               <taxonomy>\r
5007                                 <id provider="uniprot">259564</id>\r
5008                                 <code>METBU</code>\r
5009                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
5010                               </taxonomy>\r
5011                             </clade>\r
5012                           </clade>\r
5013                           <clade>\r
5014                             <name>a_11</name>\r
5015                             <taxonomy>\r
5016                               <id provider="uniprot">2191</id>\r
5017                               <scientific_name>Methanomicrobiales</scientific_name>\r
5018                               <rank>order</rank>\r
5019                             </taxonomy>\r
5020                             <clade>\r
5021                               <name>a_9</name>\r
5022                               <clade>\r
5023                                 <taxonomy>\r
5024                                   <id provider="uniprot">456442</id>\r
5025                                   <code>METB6</code>\r
5026                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
5027                                 </taxonomy>\r
5028                               </clade>\r
5029                               <clade>\r
5030                                 <taxonomy>\r
5031                                   <id provider="uniprot">2203</id>\r
5032                                   <code>METHU</code>\r
5033                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
5034                                   <rank>species</rank>\r
5035                                 </taxonomy>\r
5036                               </clade>\r
5037                             </clade>\r
5038                             <clade>\r
5039                               <taxonomy>\r
5040                                 <id provider="uniprot">368407</id>\r
5041                                 <code>METMJ</code>\r
5042                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
5043                               </taxonomy>\r
5044                             </clade>\r
5045                           </clade>\r
5046                         </clade>\r
5047                         <clade>\r
5048                           <taxonomy>\r
5049                             <id provider="uniprot">410358</id>\r
5050                             <code>METLZ</code>\r
5051                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
5052                           </taxonomy>\r
5053                         </clade>\r
5054                       </clade>\r
5055                       <clade>\r
5056                         <taxonomy>\r
5057                           <id provider="uniprot">349307</id>\r
5058                           <code>METTP</code>\r
5059                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
5060                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
5061                         </taxonomy>\r
5062                       </clade>\r
5063                     </clade>\r
5064                     <clade>\r
5065                       <taxonomy>\r
5066                         <id provider="uniprot">2236</id>\r
5067                         <scientific_name>Halobacteriaceae</scientific_name>\r
5068                         <rank>family</rank>\r
5069                       </taxonomy>\r
5070                       <clade>\r
5071                         <name>a_23</name>\r
5072                         <clade>\r
5073                           <name>a_19</name>\r
5074                           <clade>\r
5075                             <taxonomy>\r
5076                               <id provider="uniprot">2238</id>\r
5077                               <code>HALMA</code>\r
5078                               <scientific_name>Haloarcula marismortui</scientific_name>\r
5079                               <synonym>Halobacterium marismortui</synonym>\r
5080                               <rank>species</rank>\r
5081                             </taxonomy>\r
5082                           </clade>\r
5083                           <clade>\r
5084                             <taxonomy>\r
5085                               <id provider="uniprot">2257</id>\r
5086                               <code>NATPH</code>\r
5087                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
5088                               <common_name>Natronobacterium pharaonis</common_name>\r
5089                               <rank>species</rank>\r
5090                             </taxonomy>\r
5091                           </clade>\r
5092                         </clade>\r
5093                         <clade>\r
5094                           <name>a_22</name>\r
5095                           <taxonomy>\r
5096                             <id provider="uniprot">2239</id>\r
5097                             <scientific_name>Halobacterium</scientific_name>\r
5098                             <rank>genus</rank>\r
5099                           </taxonomy>\r
5100                           <clade>\r
5101                             <taxonomy>\r
5102                               <id provider="uniprot">478009</id>\r
5103                               <code>HALS3</code>\r
5104                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
5105                             </taxonomy>\r
5106                           </clade>\r
5107                           <clade>\r
5108                             <taxonomy>\r
5109                               <id provider="uniprot">2243</id>\r
5110                               <code>HALSP</code>\r
5111                               <scientific_name>Halobacterium sp.</scientific_name>\r
5112                               <rank>species</rank>\r
5113                             </taxonomy>\r
5114                           </clade>\r
5115                         </clade>\r
5116                       </clade>\r
5117                       <clade>\r
5118                         <taxonomy>\r
5119                           <id provider="uniprot">362976</id>\r
5120                           <code>HALWD</code>\r
5121                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
5122                         </taxonomy>\r
5123                       </clade>\r
5124                     </clade>\r
5125                   </clade>\r
5126                   <clade>\r
5127                     <taxonomy>\r
5128                       <id provider="uniprot">2234</id>\r
5129                       <code>ARCFU</code>\r
5130                       <scientific_name>Archaeoglobus fulgidus</scientific_name>\r
5131                       <rank>species</rank>\r
5132                     </taxonomy>\r
5133                   </clade>\r
5134                 </clade>\r
5135                 <clade>\r
5136                   <name>a_43</name>\r
5137                   <clade>\r
5138                     <name>a_41</name>\r
5139                     <clade>\r
5140                       <taxonomy>\r
5141                         <id provider="uniprot">2182</id>\r
5142                         <scientific_name>Methanococcales</scientific_name>\r
5143                         <rank>order</rank>\r
5144                       </taxonomy>\r
5145                       <clade>\r
5146                         <name>a_31</name>\r
5147                         <clade>\r
5148                           <taxonomy>\r
5149                             <id provider="uniprot">2190</id>\r
5150                             <code>METJA</code>\r
5151                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
5152                             <synonym>Methanococcus jannaschii</synonym>\r
5153                             <rank>species</rank>\r
5154                           </taxonomy>\r
5155                         </clade>\r
5156                         <clade>\r
5157                           <taxonomy>\r
5158                             <id provider="uniprot">419665</id>\r
5159                             <code>META3</code>\r
5160                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
5161                           </taxonomy>\r
5162                         </clade>\r
5163                       </clade>\r
5164                       <clade>\r
5165                         <name>a_34</name>\r
5166                         <taxonomy>\r
5167                           <id provider="uniprot">2184</id>\r
5168                           <scientific_name>Methanococcus</scientific_name>\r
5169                           <rank>genus</rank>\r
5170                         </taxonomy>\r
5171                         <clade>\r
5172                           <taxonomy>\r
5173                             <id provider="uniprot">39152</id>\r
5174                             <code>METMP</code>\r
5175                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
5176                             <synonym>Methanococcus deltae</synonym>\r
5177                             <rank>species</rank>\r
5178                           </taxonomy>\r
5179                         </clade>\r
5180                         <clade>\r
5181                           <taxonomy>\r
5182                             <id provider="uniprot">406327</id>\r
5183                             <code>METVS</code>\r
5184                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
5185                           </taxonomy>\r
5186                         </clade>\r
5187                       </clade>\r
5188                     </clade>\r
5189                     <clade>\r
5190                       <name>a_40</name>\r
5191                       <taxonomy>\r
5192                         <id provider="uniprot">2159</id>\r
5193                         <scientific_name>Methanobacteriaceae</scientific_name>\r
5194                         <rank>family</rank>\r
5195                       </taxonomy>\r
5196                       <clade>\r
5197                         <name>a_38</name>\r
5198                         <clade>\r
5199                           <taxonomy>\r
5200                             <id provider="uniprot">420247</id>\r
5201                             <code>METS3</code>\r
5202                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
5203                           </taxonomy>\r
5204                         </clade>\r
5205                         <clade>\r
5206                           <taxonomy>\r
5207                             <id provider="uniprot">339860</id>\r
5208                             <code>METST</code>\r
5209                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
5210                           </taxonomy>\r
5211                         </clade>\r
5212                       </clade>\r
5213                       <clade>\r
5214                         <taxonomy>\r
5215                           <id provider="uniprot">187420</id>\r
5216                           <code>METTH</code>\r
5217                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
5218                           <synonym>Methanobacterium thermoautotrophicum</synonym>\r
5219                         </taxonomy>\r
5220                       </clade>\r
5221                     </clade>\r
5222                   </clade>\r
5223                   <clade>\r
5224                     <taxonomy>\r
5225                       <id provider="uniprot">2320</id>\r
5226                       <code>METKA</code>\r
5227                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
5228                       <rank>species</rank>\r
5229                     </taxonomy>\r
5230                   </clade>\r
5231                 </clade>\r
5232               </clade>\r
5233               <clade>\r
5234                 <taxonomy>\r
5235                   <id provider="uniprot">2259</id>\r
5236                   <scientific_name>Thermococcaceae</scientific_name>\r
5237                   <rank>family</rank>\r
5238                 </taxonomy>\r
5239                 <clade>\r
5240                   <name>PYRFU &amp; PYRKO &amp; PYRAB &amp; PYRHO</name>\r
5241                   <clade>\r
5242                     <name>PYRFU &amp; PYRKO</name>\r
5243                     <clade>\r
5244                       <taxonomy>\r
5245                         <id provider="uniprot">2261</id>\r
5246                         <code>PYRFU</code>\r
5247                         <scientific_name>Pyrococcus furiosus</scientific_name>\r
5248                         <rank>species</rank>\r
5249                       </taxonomy>\r
5250                     </clade>\r
5251                     <clade>\r
5252                       <taxonomy>\r
5253                         <id provider="uniprot">69014</id>\r
5254                         <code>PYRKO</code>\r
5255                         <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
5256                         <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>\r
5257                       </taxonomy>\r
5258                     </clade>\r
5259                   </clade>\r
5260                   <clade>\r
5261                     <taxonomy>\r
5262                       <id provider="uniprot">2260</id>\r
5263                       <scientific_name>Pyrococcus</scientific_name>\r
5264                       <rank>genus</rank>\r
5265                     </taxonomy>\r
5266                     <clade>\r
5267                       <taxonomy>\r
5268                         <id provider="uniprot">29292</id>\r
5269                         <code>PYRAB</code>\r
5270                         <scientific_name>Pyrococcus abyssi</scientific_name>\r
5271                         <rank>species</rank>\r
5272                       </taxonomy>\r
5273                     </clade>\r
5274                     <clade>\r
5275                       <taxonomy>\r
5276                         <id provider="uniprot">53953</id>\r
5277                         <code>PYRHO</code>\r
5278                         <scientific_name>Pyrococcus horikoshii</scientific_name>\r
5279                         <rank>species</rank>\r
5280                       </taxonomy>\r
5281                     </clade>\r
5282                   </clade>\r
5283                 </clade>\r
5284                 <clade>\r
5285                   <taxonomy>\r
5286                     <id provider="uniprot">523850</id>\r
5287                     <code>THEON</code>\r
5288                     <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>\r
5289                   </taxonomy>\r
5290                 </clade>\r
5291               </clade>\r
5292             </clade>\r
5293             <clade>\r
5294               <name>a_55</name>\r
5295               <clade>\r
5296                 <taxonomy>\r
5297                   <id provider="uniprot">228908</id>\r
5298                   <code>NANEQ</code>\r
5299                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
5300                 </taxonomy>\r
5301               </clade>\r
5302               <clade>\r
5303                 <taxonomy>\r
5304                   <id provider="uniprot">436308</id>\r
5305                   <code>NITMS</code>\r
5306                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
5307                 </taxonomy>\r
5308               </clade>\r
5309             </clade>\r
5310           </clade>\r
5311           <clade>\r
5312             <taxonomy>\r
5313               <id provider="uniprot">2301</id>\r
5314               <scientific_name>Thermoplasmatales</scientific_name>\r
5315               <rank>order</rank>\r
5316             </taxonomy>\r
5317             <clade>\r
5318               <name>a_59</name>\r
5319               <taxonomy>\r
5320                 <id provider="uniprot">2302</id>\r
5321                 <scientific_name>Thermoplasma</scientific_name>\r
5322                 <rank>genus</rank>\r
5323               </taxonomy>\r
5324               <clade>\r
5325                 <taxonomy>\r
5326                   <id provider="uniprot">273075</id>\r
5327                   <code>THEAC</code>\r
5328                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
5329                 </taxonomy>\r
5330               </clade>\r
5331               <clade>\r
5332                 <taxonomy>\r
5333                   <id provider="uniprot">273116</id>\r
5334                   <code>THEVO</code>\r
5335                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
5336                 </taxonomy>\r
5337               </clade>\r
5338             </clade>\r
5339             <clade>\r
5340               <taxonomy>\r
5341                 <id provider="uniprot">263820</id>\r
5342                 <code>PICTO</code>\r
5343                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
5344               </taxonomy>\r
5345             </clade>\r
5346           </clade>\r
5347         </clade>\r
5348         <clade>\r
5349           <name>a_93</name>\r
5350           <clade>\r
5351             <taxonomy>\r
5352               <id provider="uniprot">183924</id>\r
5353               <scientific_name>Thermoprotei</scientific_name>\r
5354               <rank>class</rank>\r
5355             </taxonomy>\r
5356             <clade>\r
5357               <name>a_83</name>\r
5358               <clade>\r
5359                 <name>a_81</name>\r
5360                 <clade>\r
5361                   <taxonomy>\r
5362                     <id provider="uniprot">2267</id>\r
5363                     <scientific_name>Thermoproteaceae</scientific_name>\r
5364                     <rank>family</rank>\r
5365                   </taxonomy>\r
5366                   <clade>\r
5367                     <name>a_71</name>\r
5368                     <clade>\r
5369                       <name>a_67</name>\r
5370                       <taxonomy>\r
5371                         <id provider="uniprot">2276</id>\r
5372                         <scientific_name>Pyrobaculum</scientific_name>\r
5373                         <rank>genus</rank>\r
5374                       </taxonomy>\r
5375                       <clade>\r
5376                         <name>a_65</name>\r
5377                         <clade>\r
5378                           <taxonomy>\r
5379                             <id provider="uniprot">340102</id>\r
5380                             <code>PYRAR</code>\r
5381                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
5382                           </taxonomy>\r
5383                         </clade>\r
5384                         <clade>\r
5385                           <taxonomy>\r
5386                             <id provider="uniprot">410359</id>\r
5387                             <code>PYRCJ</code>\r
5388                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
5389                           </taxonomy>\r
5390                         </clade>\r
5391                       </clade>\r
5392                       <clade>\r
5393                         <taxonomy>\r
5394                           <id provider="uniprot">13773</id>\r
5395                           <code>PYRAE</code>\r
5396                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
5397                           <rank>species</rank>\r
5398                         </taxonomy>\r
5399                       </clade>\r
5400                     </clade>\r
5401                     <clade>\r
5402                       <name>a_70</name>\r
5403                       <clade>\r
5404                         <taxonomy>\r
5405                           <id provider="uniprot">384616</id>\r
5406                           <code>PYRIL</code>\r
5407                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
5408                         </taxonomy>\r
5409                       </clade>\r
5410                       <clade>\r
5411                         <taxonomy>\r
5412                           <id provider="uniprot">444157</id>\r
5413                           <code>THENV</code>\r
5414                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
5415                           <synonym>Thermoproteus neutrophilus</synonym>\r
5416                         </taxonomy>\r
5417                       </clade>\r
5418                     </clade>\r
5419                   </clade>\r
5420                   <clade>\r
5421                     <taxonomy>\r
5422                       <id provider="uniprot">397948</id>\r
5423                       <code>CALMQ</code>\r
5424                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
5425                     </taxonomy>\r
5426                   </clade>\r
5427                 </clade>\r
5428                 <clade>\r
5429                   <name>a_80</name>\r
5430                   <taxonomy>\r
5431                     <id provider="uniprot">118883</id>\r
5432                     <scientific_name>Sulfolobaceae</scientific_name>\r
5433                     <rank>family</rank>\r
5434                   </taxonomy>\r
5435                   <clade>\r
5436                     <name>a_78</name>\r
5437                     <taxonomy>\r
5438                       <id provider="uniprot">2284</id>\r
5439                       <scientific_name>Sulfolobus</scientific_name>\r
5440                       <rank>genus</rank>\r
5441                     </taxonomy>\r
5442                     <clade>\r
5443                       <name>a_76</name>\r
5444                       <clade>\r
5445                         <taxonomy>\r
5446                           <id provider="uniprot">2285</id>\r
5447                           <code>SULAC</code>\r
5448                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
5449                           <rank>species</rank>\r
5450                         </taxonomy>\r
5451                       </clade>\r
5452                       <clade>\r
5453                         <taxonomy>\r
5454                           <id provider="uniprot">273063</id>\r
5455                           <code>SULTO</code>\r
5456                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
5457                         </taxonomy>\r
5458                       </clade>\r
5459                     </clade>\r
5460                     <clade>\r
5461                       <taxonomy>\r
5462                         <id provider="uniprot">2287</id>\r
5463                         <code>SULSO</code>\r
5464                         <scientific_name>Sulfolobus solfataricus</scientific_name>\r
5465                         <rank>species</rank>\r
5466                       </taxonomy>\r
5467                     </clade>\r
5468                   </clade>\r
5469                   <clade>\r
5470                     <taxonomy>\r
5471                       <id provider="uniprot">399549</id>\r
5472                       <code>METS5</code>\r
5473                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
5474                     </taxonomy>\r
5475                   </clade>\r
5476                 </clade>\r
5477               </clade>\r
5478               <clade>\r
5479                 <taxonomy>\r
5480                   <id provider="uniprot">56636</id>\r
5481                   <code>AERPE</code>\r
5482                   <scientific_name>Aeropyrum pernix</scientific_name>\r
5483                   <rank>species</rank>\r
5484                 </taxonomy>\r
5485               </clade>\r
5486             </clade>\r
5487             <clade>\r
5488               <name>a_90</name>\r
5489               <clade>\r
5490                 <name>a_88</name>\r
5491                 <clade>\r
5492                   <name>a_86</name>\r
5493                   <clade>\r
5494                     <taxonomy>\r
5495                       <id provider="uniprot">399550</id>\r
5496                       <code>STAMF</code>\r
5497                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
5498                     </taxonomy>\r
5499                   </clade>\r
5500                   <clade>\r
5501                     <taxonomy>\r
5502                       <id provider="uniprot">368408</id>\r
5503                       <code>THEPD</code>\r
5504                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
5505                     </taxonomy>\r
5506                   </clade>\r
5507                 </clade>\r
5508                 <clade>\r
5509                   <taxonomy>\r
5510                     <id provider="uniprot">415426</id>\r
5511                     <code>HYPBU</code>\r
5512                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
5513                   </taxonomy>\r
5514                 </clade>\r
5515               </clade>\r
5516               <clade>\r
5517                 <taxonomy>\r
5518                   <id provider="uniprot">453591</id>\r
5519                   <code>IGNH4</code>\r
5520                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
5521                 </taxonomy>\r
5522               </clade>\r
5523             </clade>\r
5524           </clade>\r
5525           <clade>\r
5526             <taxonomy>\r
5527               <id provider="uniprot">374847</id>\r
5528               <code>KORCO</code>\r
5529               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
5530             </taxonomy>\r
5531           </clade>\r
5532         </clade>\r
5533       </clade>\r
5534     </clade>\r
5535     <clade>\r
5536       <taxonomy>\r
5537         <id provider="uniprot">2</id>\r
5538         <scientific_name>Bacteria</scientific_name>\r
5539         <rank>superkingdom</rank>\r
5540       </taxonomy>\r
5541       <clade>\r
5542         <name>b_278</name>\r
5543         <clade>\r
5544           <name>b_268</name>\r
5545           <clade>\r
5546             <name>b_226</name>\r
5547             <clade>\r
5548               <name>b_200</name>\r
5549               <clade>\r
5550                 <name>b_194</name>\r
5551                 <clade>\r
5552                   <name>b_104</name>\r
5553                   <clade>\r
5554                     <name>b_80</name>\r
5555                     <clade>\r
5556                       <taxonomy>\r
5557                         <id provider="uniprot">1224</id>\r
5558                         <scientific_name>Proteobacteria</scientific_name>\r
5559                         <rank>phylum</rank>\r
5560                       </taxonomy>\r
5561                       <clade>\r
5562                         <name>b_52</name>\r
5563                         <clade>\r
5564                           <name>b_44</name>\r
5565                           <clade>\r
5566                             <name>b_30</name>\r
5567                             <clade>\r
5568                               <name>b_24</name>\r
5569                               <taxonomy>\r
5570                                 <id provider="uniprot">1236</id>\r
5571                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
5572                                 <rank>class</rank>\r
5573                               </taxonomy>\r
5574                               <clade>\r
5575                                 <name>b_16</name>\r
5576                                 <clade>\r
5577                                   <taxonomy>\r
5578                                     <id provider="uniprot">543</id>\r
5579                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
5580                                     <rank>family</rank>\r
5581                                   </taxonomy>\r
5582                                   <clade>\r
5583                                     <name>b_8</name>\r
5584                                     <clade>\r
5585                                       <name>b_6</name>\r
5586                                       <clade>\r
5587                                         <name>b_4</name>\r
5588                                         <clade>\r
5589                                           <taxonomy>\r
5590                                             <id provider="uniprot">561</id>\r
5591                                             <scientific_name>Escherichia</scientific_name>\r
5592                                             <rank>genus</rank>\r
5593                                           </taxonomy>\r
5594                                           <clade>\r
5595                                             <taxonomy>\r
5596                                               <id provider="uniprot">83333</id>\r
5597                                               <code>ECOLI</code>\r
5598                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
5599                                             </taxonomy>\r
5600                                           </clade>\r
5601                                           <clade>\r
5602                                             <taxonomy>\r
5603                                               <id provider="uniprot">83334</id>\r
5604                                               <code>ECO57</code>\r
5605                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
5606                                             </taxonomy>\r
5607                                           </clade>\r
5608                                         </clade>\r
5609                                         <clade>\r
5610                                           <taxonomy>\r
5611                                             <id provider="uniprot">623</id>\r
5612                                             <code>SHIFL</code>\r
5613                                             <scientific_name>Shigella flexneri</scientific_name>\r
5614                                             <rank>species</rank>\r
5615                                           </taxonomy>\r
5616                                         </clade>\r
5617                                       </clade>\r
5618                                       <clade>\r
5619                                         <taxonomy>\r
5620                                           <id provider="uniprot">90371</id>\r
5621                                           <code>SALTY</code>\r
5622                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
5623                                         </taxonomy>\r
5624                                       </clade>\r
5625                                     </clade>\r
5626                                     <clade>\r
5627                                       <taxonomy>\r
5628                                         <id provider="uniprot">632</id>\r
5629                                         <code>YERPE</code>\r
5630                                         <scientific_name>Yersinia pestis</scientific_name>\r
5631                                         <rank>species</rank>\r
5632                                       </taxonomy>\r
5633                                     </clade>\r
5634                                   </clade>\r
5635                                   <clade>\r
5636                                     <taxonomy>\r
5637                                       <id provider="uniprot">29488</id>\r
5638                                       <code>PHOLU</code>\r
5639                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
5640                                       <synonym>Xenorhabdus luminescens</synonym>\r
5641                                       <rank>species</rank>\r
5642                                     </taxonomy>\r
5643                                   </clade>\r
5644                                 </clade>\r
5645                                 <clade>\r
5646                                   <name>b_15</name>\r
5647                                   <clade>\r
5648                                     <name>b_13</name>\r
5649                                     <taxonomy>\r
5650                                       <id provider="uniprot">641</id>\r
5651                                       <scientific_name>Vibrionaceae</scientific_name>\r
5652                                       <rank>family</rank>\r
5653                                     </taxonomy>\r
5654                                     <clade>\r
5655                                       <taxonomy>\r
5656                                         <id provider="uniprot">74109</id>\r
5657                                         <code>PHOPR</code>\r
5658                                         <scientific_name>Photobacterium profundum</scientific_name>\r
5659                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
5660                                         <rank>species</rank>\r
5661                                       </taxonomy>\r
5662                                     </clade>\r
5663                                     <clade>\r
5664                                       <taxonomy>\r
5665                                         <id provider="uniprot">666</id>\r
5666                                         <code>VIBCH</code>\r
5667                                         <scientific_name>Vibrio cholerae</scientific_name>\r
5668                                         <rank>species</rank>\r
5669                                       </taxonomy>\r
5670                                     </clade>\r
5671                                   </clade>\r
5672                                   <clade>\r
5673                                     <taxonomy>\r
5674                                       <id provider="uniprot">318161</id>\r
5675                                       <code>SHEDO</code>\r
5676                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
5677                                     </taxonomy>\r
5678                                   </clade>\r
5679                                 </clade>\r
5680                               </clade>\r
5681                               <clade>\r
5682                                 <name>b_23</name>\r
5683                                 <clade>\r
5684                                   <name>b_21</name>\r
5685                                   <taxonomy>\r
5686                                     <id provider="uniprot">286</id>\r
5687                                     <scientific_name>Pseudomonas</scientific_name>\r
5688                                     <rank>genus</rank>\r
5689                                   </taxonomy>\r
5690                                   <clade>\r
5691                                     <name>b_19</name>\r
5692                                     <clade>\r
5693                                       <taxonomy>\r
5694                                         <id provider="uniprot">220664</id>\r
5695                                         <code>PSEF5</code>\r
5696                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
5697                                       </taxonomy>\r
5698                                     </clade>\r
5699                                     <clade>\r
5700                                       <taxonomy>\r
5701                                         <id provider="uniprot">205922</id>\r
5702                                         <code>PSEPF</code>\r
5703                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
5704                                       </taxonomy>\r
5705                                     </clade>\r
5706                                   </clade>\r
5707                                   <clade>\r
5708                                     <taxonomy>\r
5709                                       <id provider="uniprot">287</id>\r
5710                                       <code>PSEAE</code>\r
5711                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
5712                                       <rank>species</rank>\r
5713                                     </taxonomy>\r
5714                                   </clade>\r
5715                                 </clade>\r
5716                                 <clade>\r
5717                                   <taxonomy>\r
5718                                     <id provider="uniprot">290398</id>\r
5719                                     <code>CHRSD</code>\r
5720                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
5721                                   </taxonomy>\r
5722                                 </clade>\r
5723                               </clade>\r
5724                             </clade>\r
5725                             <clade>\r
5726                               <name>b_29</name>\r
5727                               <taxonomy>\r
5728                                 <id provider="uniprot">28216</id>\r
5729                                 <scientific_name>Betaproteobacteria</scientific_name>\r
5730                                 <rank>class</rank>\r
5731                               </taxonomy>\r
5732                               <clade>\r
5733                                 <taxonomy>\r
5734                                   <id provider="uniprot">159087</id>\r
5735                                   <code>DECAR</code>\r
5736                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
5737                                 </taxonomy>\r
5738                               </clade>\r
5739                               <clade>\r
5740                                 <taxonomy>\r
5741                                   <id provider="uniprot">266264</id>\r
5742                                   <code>RALME</code>\r
5743                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
5744                                 </taxonomy>\r
5745                               </clade>\r
5746                             </clade>\r
5747                           </clade>\r
5748                           <clade>\r
5749                             <name>b_43</name>\r
5750                             <clade>\r
5751                               <name>b_41</name>\r
5752                               <clade>\r
5753                                 <name>b_35</name>\r
5754                                 <taxonomy>\r
5755                                   <id provider="uniprot">28216</id>\r
5756                                   <scientific_name>Betaproteobacteria</scientific_name>\r
5757                                   <rank>class</rank>\r
5758                                 </taxonomy>\r
5759                                 <clade>\r
5760                                   <name>b_33</name>\r
5761                                   <taxonomy>\r
5762                                     <id provider="uniprot">206379</id>\r
5763                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
5764                                     <rank>family</rank>\r
5765                                   </taxonomy>\r
5766                                   <clade>\r
5767                                     <taxonomy>\r
5768                                       <id provider="uniprot">915</id>\r
5769                                       <code>NITEU</code>\r
5770                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
5771                                       <rank>species</rank>\r
5772                                     </taxonomy>\r
5773                                   </clade>\r
5774                                   <clade>\r
5775                                     <taxonomy>\r
5776                                       <id provider="uniprot">323848</id>\r
5777                                       <code>NITMU</code>\r
5778                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
5779                                     </taxonomy>\r
5780                                   </clade>\r
5781                                 </clade>\r
5782                                 <clade>\r
5783                                   <taxonomy>\r
5784                                     <id provider="uniprot">36861</id>\r
5785                                     <code>THIDE</code>\r
5786                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
5787                                     <rank>species</rank>\r
5788                                   </taxonomy>\r
5789                                 </clade>\r
5790                               </clade>\r
5791                               <clade>\r
5792                                 <name>b_40</name>\r
5793                                 <taxonomy>\r
5794                                   <id provider="uniprot">135613</id>\r
5795                                   <scientific_name>Chromatiales</scientific_name>\r
5796                                   <rank>order</rank>\r
5797                                 </taxonomy>\r
5798                                 <clade>\r
5799                                   <name>b_38</name>\r
5800                                   <taxonomy>\r
5801                                     <id provider="uniprot">72276</id>\r
5802                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
5803                                     <common_name>purple sulfur bacteria</common_name>\r
5804                                     <rank>family</rank>\r
5805                                   </taxonomy>\r
5806                                   <clade>\r
5807                                     <taxonomy>\r
5808                                       <id provider="uniprot">187272</id>\r
5809                                       <code>ALHEH</code>\r
5810                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
5811                                     </taxonomy>\r
5812                                   </clade>\r
5813                                   <clade>\r
5814                                     <taxonomy>\r
5815                                       <id provider="uniprot">349124</id>\r
5816                                       <code>HALHL</code>\r
5817                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
5818                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
5819                                     </taxonomy>\r
5820                                   </clade>\r
5821                                 </clade>\r
5822                                 <clade>\r
5823                                   <taxonomy>\r
5824                                     <id provider="uniprot">323261</id>\r
5825                                     <code>NITOC</code>\r
5826                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
5827                                   </taxonomy>\r
5828                                 </clade>\r
5829                               </clade>\r
5830                             </clade>\r
5831                             <clade>\r
5832                               <taxonomy>\r
5833                                 <id provider="uniprot">317025</id>\r
5834                                 <code>THICR</code>\r
5835                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
5836                               </taxonomy>\r
5837                             </clade>\r
5838                           </clade>\r
5839                         </clade>\r
5840                         <clade>\r
5841                           <name>b_51</name>\r
5842                           <taxonomy>\r
5843                             <id provider="uniprot">1236</id>\r
5844                             <scientific_name>Gammaproteobacteria</scientific_name>\r
5845                             <rank>class</rank>\r
5846                           </taxonomy>\r
5847                           <clade>\r
5848                             <name>b_47</name>\r
5849                             <clade>\r
5850                               <taxonomy>\r
5851                                 <id provider="uniprot">135577</id>\r
5852                                 <code>IDILO</code>\r
5853                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
5854                                 <rank>species</rank>\r
5855                               </taxonomy>\r
5856                             </clade>\r
5857                             <clade>\r
5858                               <taxonomy>\r
5859                                 <id provider="uniprot">446</id>\r
5860                                 <code>LEGPN</code>\r
5861                                 <scientific_name>Legionella pneumophila</scientific_name>\r
5862                                 <rank>species</rank>\r
5863                               </taxonomy>\r
5864                             </clade>\r
5865                           </clade>\r
5866                           <clade>\r
5867                             <name>b_50</name>\r
5868                             <taxonomy>\r
5869                               <id provider="uniprot">32033</id>\r
5870                               <scientific_name>Xanthomonadaceae</scientific_name>\r
5871                               <rank>family</rank>\r
5872                             </taxonomy>\r
5873                             <clade>\r
5874                               <taxonomy>\r
5875                                 <id provider="uniprot">190486</id>\r
5876                                 <code>XANAC</code>\r
5877                                 <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>\r
5878                                 <synonym>Xanthomonas citri pv. citri str. 306</synonym>\r
5879                               </taxonomy>\r
5880                             </clade>\r
5881                             <clade>\r
5882                               <taxonomy>\r
5883                                 <id provider="uniprot">183190</id>\r
5884                                 <code>XYLFT</code>\r
5885                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
5886                               </taxonomy>\r
5887                             </clade>\r
5888                           </clade>\r
5889                         </clade>\r
5890                       </clade>\r
5891                       <clade>\r
5892                         <name>b_71</name>\r
5893                         <taxonomy>\r
5894                           <id provider="uniprot">28211</id>\r
5895                           <scientific_name>Alphaproteobacteria</scientific_name>\r
5896                           <rank>class</rank>\r
5897                         </taxonomy>\r
5898                         <clade>\r
5899                           <name>b_67</name>\r
5900                           <clade>\r
5901                             <name>b_65</name>\r
5902                             <clade>\r
5903                               <name>b_61</name>\r
5904                               <taxonomy>\r
5905                                 <id provider="uniprot">356</id>\r
5906                                 <scientific_name>Rhizobiales</scientific_name>\r
5907                                 <rank>order</rank>\r
5908                               </taxonomy>\r
5909                               <clade>\r
5910                                 <name>b_57</name>\r
5911                                 <taxonomy>\r
5912                                   <id provider="uniprot">227290</id>\r
5913                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
5914                                 </taxonomy>\r
5915                                 <clade>\r
5916                                   <taxonomy>\r
5917                                     <id provider="uniprot">176299</id>\r
5918                                     <code>AGRT5</code>\r
5919                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
5920                                   </taxonomy>\r
5921                                 </clade>\r
5922                                 <clade>\r
5923                                   <taxonomy>\r
5924                                     <id provider="uniprot">347834</id>\r
5925                                     <code>RHIEC</code>\r
5926                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
5927                                   </taxonomy>\r
5928                                 </clade>\r
5929                               </clade>\r
5930                               <clade>\r
5931                                 <name>b_60</name>\r
5932                                 <taxonomy>\r
5933                                   <id provider="uniprot">41294</id>\r
5934                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
5935                                   <rank>family</rank>\r
5936                                 </taxonomy>\r
5937                                 <clade>\r
5938                                   <taxonomy>\r
5939                                     <id provider="uniprot">375</id>\r
5940                                     <code>BRAJA</code>\r
5941                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
5942                                     <rank>species</rank>\r
5943                                   </taxonomy>\r
5944                                 </clade>\r
5945                                 <clade>\r
5946                                   <taxonomy>\r
5947                                     <id provider="uniprot">395960</id>\r
5948                                     <code>RHOPT</code>\r
5949                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
5950                                   </taxonomy>\r
5951                                 </clade>\r
5952                               </clade>\r
5953                             </clade>\r
5954                             <clade>\r
5955                               <name>b_64</name>\r
5956                               <taxonomy>\r
5957                                 <id provider="uniprot">31989</id>\r
5958                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
5959                                 <rank>family</rank>\r
5960                               </taxonomy>\r
5961                               <clade>\r
5962                                 <taxonomy>\r
5963                                   <id provider="uniprot">349101</id>\r
5964                                   <code>RHOS1</code>\r
5965                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
5966                                 </taxonomy>\r
5967                               </clade>\r
5968                               <clade>\r
5969                                 <taxonomy>\r
5970                                   <id provider="uniprot">375451</id>\r
5971                                   <code>ROSDO</code>\r
5972                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
5973                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
5974                                   <synonym>Roseobacter denitrificans</synonym>\r
5975                                 </taxonomy>\r
5976                               </clade>\r
5977                             </clade>\r
5978                           </clade>\r
5979                           <clade>\r
5980                             <taxonomy>\r
5981                               <id provider="uniprot">155892</id>\r
5982                               <code>CAUCR</code>\r
5983                               <scientific_name>Caulobacter crescentus</scientific_name>\r
5984                               <synonym>Caulobacter vibrioides</synonym>\r
5985                               <rank>species</rank>\r
5986                             </taxonomy>\r
5987                           </clade>\r
5988                         </clade>\r
5989                         <clade>\r
5990                           <name>b_70</name>\r
5991                           <taxonomy>\r
5992                             <id provider="uniprot">204441</id>\r
5993                             <scientific_name>Rhodospirillales</scientific_name>\r
5994                             <rank>order</rank>\r
5995                           </taxonomy>\r
5996                           <clade>\r
5997                             <taxonomy>\r
5998                               <id provider="uniprot">524</id>\r
5999                               <code>ACICY</code>\r
6000                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
6001                               <rank>species</rank>\r
6002                             </taxonomy>\r
6003                           </clade>\r
6004                           <clade>\r
6005                             <taxonomy>\r
6006                               <id provider="uniprot">1085</id>\r
6007                               <code>RHORU</code>\r
6008                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
6009                               <rank>species</rank>\r
6010                             </taxonomy>\r
6011                           </clade>\r
6012                         </clade>\r
6013                       </clade>\r
6014                     </clade>\r
6015                     <clade>\r
6016                       <name>b_79</name>\r
6017                       <clade>\r
6018                         <name>b_77</name>\r
6019                         <taxonomy>\r
6020                           <id provider="uniprot">1224</id>\r
6021                           <scientific_name>Proteobacteria</scientific_name>\r
6022                           <rank>phylum</rank>\r
6023                         </taxonomy>\r
6024                         <clade>\r
6025                           <name>b_75</name>\r
6026                           <taxonomy>\r
6027                             <id provider="uniprot">712</id>\r
6028                             <scientific_name>Pasteurellaceae</scientific_name>\r
6029                             <rank>family</rank>\r
6030                           </taxonomy>\r
6031                           <clade>\r
6032                             <taxonomy>\r
6033                               <id provider="uniprot">727</id>\r
6034                               <code>HAEIN</code>\r
6035                               <scientific_name>Haemophilus influenzae</scientific_name>\r
6036                               <rank>species</rank>\r
6037                             </taxonomy>\r
6038                           </clade>\r
6039                           <clade>\r
6040                             <taxonomy>\r
6041                               <id provider="uniprot">747</id>\r
6042                               <code>PASMU</code>\r
6043                               <scientific_name>Pasteurella multocida</scientific_name>\r
6044                               <rank>species</rank>\r
6045                             </taxonomy>\r
6046                           </clade>\r
6047                         </clade>\r
6048                         <clade>\r
6049                           <taxonomy>\r
6050                             <id provider="uniprot">487</id>\r
6051                             <code>NEIME</code>\r
6052                             <scientific_name>Neisseria meningitidis</scientific_name>\r
6053                             <rank>species</rank>\r
6054                           </taxonomy>\r
6055                         </clade>\r
6056                       </clade>\r
6057                       <clade>\r
6058                         <taxonomy>\r
6059                           <id provider="uniprot">905</id>\r
6060                           <code>ACIFE</code>\r
6061                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
6062                           <rank>species</rank>\r
6063                         </taxonomy>\r
6064                       </clade>\r
6065                     </clade>\r
6066                   </clade>\r
6067                   <clade>\r
6068                     <name>b_103</name>\r
6069                     <clade>\r
6070                       <name>b_91</name>\r
6071                       <taxonomy>\r
6072                         <id provider="uniprot">28221</id>\r
6073                         <scientific_name>Deltaproteobacteria</scientific_name>\r
6074                         <rank>class</rank>\r
6075                       </taxonomy>\r
6076                       <clade>\r
6077                         <name>b_87</name>\r
6078                         <clade>\r
6079                           <name>b_83</name>\r
6080                           <clade>\r
6081                             <taxonomy>\r
6082                               <id provider="uniprot">84980</id>\r
6083                               <code>DESPS</code>\r
6084                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
6085                               <rank>species</rank>\r
6086                             </taxonomy>\r
6087                           </clade>\r
6088                           <clade>\r
6089                             <taxonomy>\r
6090                               <id provider="uniprot">876</id>\r
6091                               <code>DESDE</code>\r
6092                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
6093                               <rank>species</rank>\r
6094                             </taxonomy>\r
6095                           </clade>\r
6096                         </clade>\r
6097                         <clade>\r
6098                           <taxonomy>\r
6099                             <id provider="uniprot">56780</id>\r
6100                             <code>SYNAS</code>\r
6101                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
6102                           </taxonomy>\r
6103                         </clade>\r
6104                       </clade>\r
6105                       <clade>\r
6106                         <name>b_90</name>\r
6107                         <taxonomy>\r
6108                           <id provider="uniprot">28231</id>\r
6109                           <scientific_name>Geobacter</scientific_name>\r
6110                           <rank>genus</rank>\r
6111                         </taxonomy>\r
6112                         <clade>\r
6113                           <taxonomy>\r
6114                             <id provider="uniprot">28232</id>\r
6115                             <code>GEOME</code>\r
6116                             <scientific_name>Geobacter metallireducens</scientific_name>\r
6117                             <rank>species</rank>\r
6118                           </taxonomy>\r
6119                         </clade>\r
6120                         <clade>\r
6121                           <taxonomy>\r
6122                             <id provider="uniprot">35554</id>\r
6123                             <code>GEOSL</code>\r
6124                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
6125                             <rank>species</rank>\r
6126                           </taxonomy>\r
6127                         </clade>\r
6128                       </clade>\r
6129                     </clade>\r
6130                     <clade>\r
6131                       <name>b_102</name>\r
6132                       <clade>\r
6133                         <name>b_98</name>\r
6134                         <clade>\r
6135                           <name>b_94</name>\r
6136                           <taxonomy>\r
6137                             <id provider="uniprot">31</id>\r
6138                             <scientific_name>Myxococcaceae</scientific_name>\r
6139                             <rank>family</rank>\r
6140                           </taxonomy>\r
6141                           <clade>\r
6142                             <taxonomy>\r
6143                               <id provider="uniprot">290397</id>\r
6144                               <code>ANADE</code>\r
6145                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
6146                             </taxonomy>\r
6147                           </clade>\r
6148                           <clade>\r
6149                             <taxonomy>\r
6150                               <id provider="uniprot">34</id>\r
6151                               <code>MYXXA</code>\r
6152                               <scientific_name>Myxococcus xanthus</scientific_name>\r
6153                               <rank>species</rank>\r
6154                             </taxonomy>\r
6155                           </clade>\r
6156                         </clade>\r
6157                         <clade>\r
6158                           <name>b_97</name>\r
6159                           <taxonomy>\r
6160                             <id provider="uniprot">57723</id>\r
6161                             <scientific_name>Acidobacteria</scientific_name>\r
6162                             <rank>phylum</rank>\r
6163                           </taxonomy>\r
6164                           <clade>\r
6165                             <taxonomy>\r
6166                               <id provider="uniprot">204669</id>\r
6167                               <code>ACIBL</code>\r
6168                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>\r
6169                             </taxonomy>\r
6170                           </clade>\r
6171                           <clade>\r
6172                             <taxonomy>\r
6173                               <id provider="uniprot">332163</id>\r
6174                               <code>SOLUS</code>\r
6175                               <scientific_name>Solibacter usitatus</scientific_name>\r
6176                               <rank>species</rank>\r
6177                             </taxonomy>\r
6178                           </clade>\r
6179                         </clade>\r
6180                       </clade>\r
6181                       <clade>\r
6182                         <taxonomy>\r
6183                           <id provider="uniprot">265606</id>\r
6184                           <code>RHOBA</code>\r
6185                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
6186                           <rank>species</rank>\r
6187                         </taxonomy>\r
6188                       </clade>\r
6189                     </clade>\r
6190                   </clade>\r
6191                 </clade>\r
6192                 <clade>\r
6193                   <name>b_193</name>\r
6194                   <clade>\r
6195                     <name>b_163</name>\r
6196                     <clade>\r
6197                       <name>b_133</name>\r
6198                       <clade>\r
6199                         <name>Chloroflexi &amp; Actinobacteria</name>\r
6200                         <clade>\r
6201                           <taxonomy>\r
6202                             <id provider="uniprot">201174</id>\r
6203                             <scientific_name>Actinobacteria</scientific_name>\r
6204                             <rank>phylum</rank>\r
6205                           </taxonomy>\r
6206                           <clade>\r
6207                             <taxonomy>\r
6208                               <id provider="uniprot">2037</id>\r
6209                               <scientific_name>Actinomycetales</scientific_name>\r
6210                               <rank>order</rank>\r
6211                             </taxonomy>\r
6212                             <clade>\r
6213                               <name>b_115</name>\r
6214                               <clade>\r
6215                                 <taxonomy>\r
6216                                   <id provider="uniprot">266940</id>\r
6217                                   <code>KINRD</code>\r
6218                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
6219                                 </taxonomy>\r
6220                               </clade>\r
6221                               <clade>\r
6222                                 <taxonomy>\r
6223                                   <id provider="uniprot">378753</id>\r
6224                                   <code>KOCRD</code>\r
6225                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>\r
6226                                 </taxonomy>\r
6227                               </clade>\r
6228                               <clade>\r
6229                                 <taxonomy>\r
6230                                   <id provider="uniprot">1032480</id>\r
6231                                   <code>MICPN</code>\r
6232                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
6233                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
6234                                   <rank>strain</rank>\r
6235                                 </taxonomy>\r
6236                               </clade>\r
6237                               <clade>\r
6238                                 <taxonomy>\r
6239                                   <id provider="uniprot">1902</id>\r
6240                                   <code>STRCO</code>\r
6241                                   <scientific_name>Streptomyces coelicolor</scientific_name>\r
6242                                   <rank>species</rank>\r
6243                                 </taxonomy>\r
6244                               </clade>\r
6245                               <clade>\r
6246                                 <taxonomy>\r
6247                                   <id provider="uniprot">269800</id>\r
6248                                   <code>THEFY</code>\r
6249                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>\r
6250                                 </taxonomy>\r
6251                               </clade>\r
6252                             </clade>\r
6253                             <clade>\r
6254                               <taxonomy>\r
6255                                 <id provider="uniprot">85007</id>\r
6256                                 <scientific_name>Corynebacterineae</scientific_name>\r
6257                                 <rank>suborder</rank>\r
6258                               </taxonomy>\r
6259                               <clade>\r
6260                                 <taxonomy>\r
6261                                   <id provider="uniprot">1763</id>\r
6262                                   <scientific_name>Mycobacterium</scientific_name>\r
6263                                   <rank>genus</rank>\r
6264                                 </taxonomy>\r
6265                                 <clade>\r
6266                                   <taxonomy>\r
6267                                     <id provider="uniprot">1769</id>\r
6268                                     <code>MYCLE</code>\r
6269                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
6270                                     <rank>species</rank>\r
6271                                   </taxonomy>\r
6272                                 </clade>\r
6273                                 <clade>\r
6274                                   <taxonomy>\r
6275                                     <id provider="uniprot">1773</id>\r
6276                                     <code>MYCTU</code>\r
6277                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
6278                                     <rank>species</rank>\r
6279                                   </taxonomy>\r
6280                                 </clade>\r
6281                               </clade>\r
6282                               <clade>\r
6283                                 <taxonomy>\r
6284                                   <id provider="uniprot">306537</id>\r
6285                                   <code>CORJK</code>\r
6286                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>\r
6287                                 </taxonomy>\r
6288                               </clade>\r
6289                               <clade>\r
6290                                 <taxonomy>\r
6291                                   <id provider="uniprot">632772</id>\r
6292                                   <code>RHOOB</code>\r
6293                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
6294                                   <rank>strain</rank>\r
6295                                 </taxonomy>\r
6296                               </clade>\r
6297                             </clade>\r
6298                           </clade>\r
6299                           <clade>\r
6300                             <taxonomy>\r
6301                               <id provider="uniprot">266117</id>\r
6302                               <code>RUBXD</code>\r
6303                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
6304                             </taxonomy>\r
6305                           </clade>\r
6306                         </clade>\r
6307                         <clade>\r
6308                           <taxonomy>\r
6309                             <id provider="uniprot">200795</id>\r
6310                             <scientific_name>Chloroflexi</scientific_name>\r
6311                             <common_name>GNS bacteria</common_name>\r
6312                             <synonym>Thermomicrobia</synonym>\r
6313                             <rank>phylum</rank>\r
6314                           </taxonomy>\r
6315                           <clade>\r
6316                             <taxonomy>\r
6317                               <id provider="uniprot">32061</id>\r
6318                               <scientific_name>Chloroflexi (class)</scientific_name>\r
6319                               <synonym>Chloroflecales</synonym>\r
6320                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
6321                               <rank>class</rank>\r
6322                             </taxonomy>\r
6323                             <clade>\r
6324                               <taxonomy>\r
6325                                 <id provider="uniprot">1106</id>\r
6326                                 <scientific_name>Chloroflexaceae</scientific_name>\r
6327                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
6328                                 <rank>family</rank>\r
6329                               </taxonomy>\r
6330                               <clade>\r
6331                                 <taxonomy>\r
6332                                   <id provider="uniprot">1108</id>\r
6333                                   <code>CHLAU</code>\r
6334                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
6335                                   <rank>species</rank>\r
6336                                 </taxonomy>\r
6337                               </clade>\r
6338                               <clade>\r
6339                                 <taxonomy>\r
6340                                   <id provider="uniprot">383372</id>\r
6341                                   <code>ROSCS</code>\r
6342                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
6343                                   <rank>species</rank>\r
6344                                 </taxonomy>\r
6345                               </clade>\r
6346                             </clade>\r
6347                             <clade>\r
6348                               <taxonomy>\r
6349                                 <id provider="uniprot">65</id>\r
6350                                 <code>HERAU</code>\r
6351                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
6352                                 <synonym>Herpetosiphon giganteus</synonym>\r
6353                                 <rank>species</rank>\r
6354                               </taxonomy>\r
6355                             </clade>\r
6356                           </clade>\r
6357                           <clade>\r
6358                             <taxonomy>\r
6359                               <id provider="uniprot">479434</id>\r
6360                               <code>SPHTD</code>\r
6361                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
6362                               <rank>strain</rank>\r
6363                             </taxonomy>\r
6364                           </clade>\r
6365                         </clade>\r
6366                       </clade>\r
6367                       <clade>\r
6368                         <name>b_132</name>\r
6369                         <taxonomy>\r
6370                           <id provider="uniprot">188787</id>\r
6371                           <scientific_name>Deinococci</scientific_name>\r
6372                           <rank>class</rank>\r
6373                         </taxonomy>\r
6374                         <clade>\r
6375                           <taxonomy>\r
6376                             <id provider="uniprot">1298</id>\r
6377                             <scientific_name>Deinococcus</scientific_name>\r
6378                             <rank>genus</rank>\r
6379                           </taxonomy>\r
6380                           <clade>\r
6381                             <taxonomy>\r
6382                               <id provider="uniprot">319795</id>\r
6383                               <code>DEIGD</code>\r
6384                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
6385                             </taxonomy>\r
6386                           </clade>\r
6387                           <clade>\r
6388                             <taxonomy>\r
6389                               <id provider="uniprot">1299</id>\r
6390                               <code>DEIRA</code>\r
6391                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
6392                               <rank>species</rank>\r
6393                             </taxonomy>\r
6394                           </clade>\r
6395                         </clade>\r
6396                         <clade>\r
6397                           <taxonomy>\r
6398                             <id provider="uniprot">300852</id>\r
6399                             <code>THET8</code>\r
6400                             <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>\r
6401                             <rank>strain</rank>\r
6402                           </taxonomy>\r
6403                         </clade>\r
6404                       </clade>\r
6405                     </clade>\r
6406                     <clade>\r
6407                       <name>b_162</name>\r
6408                       <taxonomy>\r
6409                         <id provider="uniprot">1117</id>\r
6410                         <scientific_name>Cyanobacteria</scientific_name>\r
6411                         <rank>phylum</rank>\r
6412                       </taxonomy>\r
6413                       <clade>\r
6414                         <name>b_154</name>\r
6415                         <clade>\r
6416                           <name>b_152</name>\r
6417                           <clade>\r
6418                             <name>b_146</name>\r
6419                             <clade>\r
6420                               <name>b_144</name>\r
6421                               <clade>\r
6422                                 <name>b_142</name>\r
6423                                 <clade>\r
6424                                   <name>b_138</name>\r
6425                                   <taxonomy>\r
6426                                     <id provider="uniprot">1162</id>\r
6427                                     <scientific_name>Nostocaceae</scientific_name>\r
6428                                     <rank>family</rank>\r
6429                                   </taxonomy>\r
6430                                   <clade>\r
6431                                     <name>b_136</name>\r
6432                                     <clade>\r
6433                                       <taxonomy>\r
6434                                         <id provider="uniprot">1172</id>\r
6435                                         <code>ANAVA</code>\r
6436                                         <scientific_name>Anabaena variabilis</scientific_name>\r
6437                                         <rank>species</rank>\r
6438                                       </taxonomy>\r
6439                                     </clade>\r
6440                                     <clade>\r
6441                                       <taxonomy>\r
6442                                         <id provider="uniprot">28072</id>\r
6443                                         <code>NOSS7</code>\r
6444                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>\r
6445                                         <rank>species</rank>\r
6446                                       </taxonomy>\r
6447                                     </clade>\r
6448                                   </clade>\r
6449                                   <clade>\r
6450                                     <taxonomy>\r
6451                                       <id provider="uniprot">63737</id>\r
6452                                       <code>NOSP7</code>\r
6453                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
6454                                     </taxonomy>\r
6455                                   </clade>\r
6456                                 </clade>\r
6457                                 <clade>\r
6458                                   <taxonomy>\r
6459                                     <id provider="uniprot">155978</id>\r
6460                                     <code>ACAMR</code>\r
6461                                     <scientific_name>Acaryochloris marina</scientific_name>\r
6462                                     <rank>species</rank>\r
6463                                   </taxonomy>\r
6464                                 </clade>\r
6465                               </clade>\r
6466                               <clade>\r
6467                                 <taxonomy>\r
6468                                   <id provider="uniprot">449447</id>\r
6469                                   <code>MICAN</code>\r
6470                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
6471                                 </taxonomy>\r
6472                               </clade>\r
6473                             </clade>\r
6474                             <clade>\r
6475                               <taxonomy>\r
6476                                 <id provider="uniprot">1206</id>\r
6477                                 <code>TRIER</code>\r
6478                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
6479                                 <rank>species</rank>\r
6480                               </taxonomy>\r
6481                             </clade>\r
6482                           </clade>\r
6483                           <clade>\r
6484                             <taxonomy>\r
6485                               <id provider="uniprot">1118</id>\r
6486                               <scientific_name>Chroococcales</scientific_name>\r
6487                               <rank>order</rank>\r
6488                             </taxonomy>\r
6489                             <clade>\r
6490                               <taxonomy>\r
6491                                 <id provider="uniprot">32046</id>\r
6492                                 <code>SYNEL</code>\r
6493                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
6494                                 <rank>species</rank>\r
6495                               </taxonomy>\r
6496                             </clade>\r
6497                             <clade>\r
6498                               <taxonomy>\r
6499                                 <id provider="uniprot">1148</id>\r
6500                                 <code>SYNY3</code>\r
6501                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>\r
6502                                 <rank>species</rank>\r
6503                               </taxonomy>\r
6504                             </clade>\r
6505                           </clade>\r
6506                         </clade>\r
6507                         <clade>\r
6508                           <taxonomy>\r
6509                             <id provider="uniprot">33072</id>\r
6510                             <code>GLOVI</code>\r
6511                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
6512                             <rank>species</rank>\r
6513                           </taxonomy>\r
6514                         </clade>\r
6515                       </clade>\r
6516                       <clade>\r
6517                         <name>b_161</name>\r
6518                         <clade>\r
6519                           <name>b_159</name>\r
6520                           <taxonomy>\r
6521                             <id provider="uniprot">1218</id>\r
6522                             <scientific_name>Prochlorococcus</scientific_name>\r
6523                             <rank>genus</rank>\r
6524                           </taxonomy>\r
6525                           <clade>\r
6526                             <name>b_157</name>\r
6527                             <clade>\r
6528                               <taxonomy>\r
6529                                 <id provider="uniprot">1219</id>\r
6530                                 <code>PROMA</code>\r
6531                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
6532                                 <rank>species</rank>\r
6533                               </taxonomy>\r
6534                             </clade>\r
6535                             <clade>\r
6536                               <taxonomy>\r
6537                                 <id provider="uniprot">59919</id>\r
6538                                 <code>PROMP</code>\r
6539                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
6540                               </taxonomy>\r
6541                             </clade>\r
6542                           </clade>\r
6543                           <clade>\r
6544                             <taxonomy>\r
6545                               <id provider="uniprot">74547</id>\r
6546                               <code>PROMM</code>\r
6547                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
6548                             </taxonomy>\r
6549                           </clade>\r
6550                         </clade>\r
6551                         <clade>\r
6552                           <taxonomy>\r
6553                             <id provider="uniprot">64471</id>\r
6554                             <code>SYNS3</code>\r
6555                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
6556                             <rank>species</rank>\r
6557                           </taxonomy>\r
6558                         </clade>\r
6559                       </clade>\r
6560                     </clade>\r
6561                   </clade>\r
6562                   <clade>\r
6563                     <name>b_192</name>\r
6564                     <clade>\r
6565                       <name>b_190</name>\r
6566                       <clade>\r
6567                         <name>b_178</name>\r
6568                         <clade>\r
6569                           <name>b_176</name>\r
6570                           <taxonomy>\r
6571                             <id provider="uniprot">191412</id>\r
6572                             <scientific_name>Chlorobiaceae</scientific_name>\r
6573                             <rank>family</rank>\r
6574                           </taxonomy>\r
6575                           <clade>\r
6576                             <name>b_170</name>\r
6577                             <clade>\r
6578                               <name>b_166</name>\r
6579                               <clade>\r
6580                                 <taxonomy>\r
6581                                   <id provider="uniprot">331678</id>\r
6582                                   <code>CHLPB</code>\r
6583                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
6584                                 </taxonomy>\r
6585                               </clade>\r
6586                               <clade>\r
6587                                 <taxonomy>\r
6588                                   <id provider="uniprot">1102</id>\r
6589                                   <code>PROAE</code>\r
6590                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
6591                                   <rank>species</rank>\r
6592                                 </taxonomy>\r
6593                               </clade>\r
6594                             </clade>\r
6595                             <clade>\r
6596                               <name>b_169</name>\r
6597                               <taxonomy>\r
6598                                 <id provider="uniprot">274493</id>\r
6599                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
6600                               </taxonomy>\r
6601                               <clade>\r
6602                                 <taxonomy>\r
6603                                   <id provider="uniprot">1100</id>\r
6604                                   <code>PELLU</code>\r
6605                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
6606                                   <rank>species</rank>\r
6607                                 </taxonomy>\r
6608                               </clade>\r
6609                               <clade>\r
6610                                 <taxonomy>\r
6611                                   <id provider="uniprot">290318</id>\r
6612                                   <code>PROVI</code>\r
6613                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
6614                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
6615                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
6616                                 </taxonomy>\r
6617                               </clade>\r
6618                             </clade>\r
6619                           </clade>\r
6620                           <clade>\r
6621                             <name>b_175</name>\r
6622                             <clade>\r
6623                               <taxonomy>\r
6624                                 <id provider="uniprot">256319</id>\r
6625                                 <scientific_name>Chlorobaculum</scientific_name>\r
6626                                 <rank>genus</rank>\r
6627                               </taxonomy>\r
6628                               <clade>\r
6629                                 <taxonomy>\r
6630                                   <id provider="uniprot">517417</id>\r
6631                                   <code>CHLP8</code>\r
6632                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
6633                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
6634                                 </taxonomy>\r
6635                               </clade>\r
6636                               <clade>\r
6637                                 <taxonomy>\r
6638                                   <id provider="uniprot">1097</id>\r
6639                                   <code>CHLTE</code>\r
6640                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
6641                                   <rank>species</rank>\r
6642                                 </taxonomy>\r
6643                               </clade>\r
6644                             </clade>\r
6645                             <clade>\r
6646                               <taxonomy>\r
6647                                 <id provider="uniprot">340177</id>\r
6648                                 <code>CHLCH</code>\r
6649                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
6650                               </taxonomy>\r
6651                             </clade>\r
6652                           </clade>\r
6653                         </clade>\r
6654                         <clade>\r
6655                           <taxonomy>\r
6656                             <id provider="uniprot">315277</id>\r
6657                             <code>CHLTA</code>\r
6658                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
6659                           </taxonomy>\r
6660                         </clade>\r
6661                       </clade>\r
6662                       <clade>\r
6663                         <name>b_189</name>\r
6664                         <taxonomy>\r
6665                           <id provider="uniprot">976</id>\r
6666                           <scientific_name>Bacteroidetes</scientific_name>\r
6667                           <rank>phylum</rank>\r
6668                         </taxonomy>\r
6669                         <clade>\r
6670                           <name>b_183</name>\r
6671                           <clade>\r
6672                             <name>b_181</name>\r
6673                             <taxonomy>\r
6674                               <id provider="uniprot">49546</id>\r
6675                               <scientific_name>Flavobacteriaceae</scientific_name>\r
6676                               <rank>family</rank>\r
6677                             </taxonomy>\r
6678                             <clade>\r
6679                               <taxonomy>\r
6680                                 <id provider="uniprot">986</id>\r
6681                                 <code>FLAJO</code>\r
6682                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
6683                                 <synonym>Cytophaga johnsonae</synonym>\r
6684                                 <rank>species</rank>\r
6685                               </taxonomy>\r
6686                             </clade>\r
6687                             <clade>\r
6688                               <taxonomy>\r
6689                                 <id provider="uniprot">411154</id>\r
6690                                 <code>GRAFK</code>\r
6691                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
6692                               </taxonomy>\r
6693                             </clade>\r
6694                           </clade>\r
6695                           <clade>\r
6696                             <taxonomy>\r
6697                               <id provider="uniprot">269798</id>\r
6698                               <code>CYTH3</code>\r
6699                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
6700                             </taxonomy>\r
6701                           </clade>\r
6702                         </clade>\r
6703                         <clade>\r
6704                           <name>b_188</name>\r
6705                           <taxonomy>\r
6706                             <id provider="uniprot">171549</id>\r
6707                             <scientific_name>Bacteroidales</scientific_name>\r
6708                             <rank>order</rank>\r
6709                           </taxonomy>\r
6710                           <clade>\r
6711                             <name>b_186</name>\r
6712                             <taxonomy>\r
6713                               <id provider="uniprot">816</id>\r
6714                               <scientific_name>Bacteroides</scientific_name>\r
6715                               <rank>genus</rank>\r
6716                             </taxonomy>\r
6717                             <clade>\r
6718                               <taxonomy>\r
6719                                 <id provider="uniprot">817</id>\r
6720                                 <code>BACFR</code>\r
6721                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
6722                                 <rank>species</rank>\r
6723                               </taxonomy>\r
6724                             </clade>\r
6725                             <clade>\r
6726                               <taxonomy>\r
6727                                 <id provider="uniprot">818</id>\r
6728                                 <code>BACTN</code>\r
6729                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
6730                                 <rank>species</rank>\r
6731                               </taxonomy>\r
6732                             </clade>\r
6733                           </clade>\r
6734                           <clade>\r
6735                             <taxonomy>\r
6736                               <id provider="uniprot">837</id>\r
6737                               <code>PORGI</code>\r
6738                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
6739                               <synonym>Bacteroides gingivalis</synonym>\r
6740                               <rank>species</rank>\r
6741                             </taxonomy>\r
6742                           </clade>\r
6743                         </clade>\r
6744                       </clade>\r
6745                     </clade>\r
6746                     <clade>\r
6747                       <taxonomy>\r
6748                         <id provider="uniprot">309807</id>\r
6749                         <code>SALRD</code>\r
6750                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
6751                       </taxonomy>\r
6752                     </clade>\r
6753                   </clade>\r
6754                 </clade>\r
6755               </clade>\r
6756               <clade>\r
6757                 <name>b_199</name>\r
6758                 <clade>\r
6759                   <name>b_197</name>\r
6760                   <taxonomy>\r
6761                     <scientific_name>Verrucomicrobia</scientific_name>\r
6762                   </taxonomy>\r
6763                   <clade>\r
6764                     <taxonomy>\r
6765                       <id provider="uniprot">349741</id>\r
6766                       <code>AKKM8</code>\r
6767                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
6768                     </taxonomy>\r
6769                   </clade>\r
6770                   <clade>\r
6771                     <taxonomy>\r
6772                       <id provider="uniprot">481448</id>\r
6773                       <code>METI4</code>\r
6774                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
6775                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
6776                     </taxonomy>\r
6777                   </clade>\r
6778                 </clade>\r
6779                 <clade>\r
6780                   <taxonomy>\r
6781                     <id provider="uniprot">44275</id>\r
6782                     <code>LEPIC</code>\r
6783                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
6784                   </taxonomy>\r
6785                 </clade>\r
6786               </clade>\r
6787             </clade>\r
6788             <clade>\r
6789               <name>b_225</name>\r
6790               <clade>\r
6791                 <name>b_219</name>\r
6792                 <taxonomy>\r
6793                   <id provider="uniprot">1239</id>\r
6794                   <scientific_name>Firmicutes</scientific_name>\r
6795                   <rank>phylum</rank>\r
6796                 </taxonomy>\r
6797                 <clade>\r
6798                   <name>b_213</name>\r
6799                   <clade>\r
6800                     <taxonomy>\r
6801                       <id provider="uniprot">1385</id>\r
6802                       <scientific_name>Bacillales</scientific_name>\r
6803                       <rank>order</rank>\r
6804                     </taxonomy>\r
6805                     <clade>\r
6806                       <taxonomy>\r
6807                         <id provider="uniprot">186817</id>\r
6808                         <scientific_name>Bacillaceae</scientific_name>\r
6809                         <rank>family</rank>\r
6810                       </taxonomy>\r
6811                       <clade>\r
6812                         <taxonomy>\r
6813                           <id provider="uniprot">1386</id>\r
6814                           <scientific_name>Bacillus</scientific_name>\r
6815                           <rank>genus</rank>\r
6816                         </taxonomy>\r
6817                         <clade>\r
6818                           <taxonomy>\r
6819                             <id provider="uniprot">86661</id>\r
6820                             <scientific_name>Bacillus cereus group</scientific_name>\r
6821                           </taxonomy>\r
6822                           <clade>\r
6823                             <taxonomy>\r
6824                               <id provider="uniprot">1392</id>\r
6825                               <code>BACAN</code>\r
6826                               <scientific_name>Bacillus anthracis</scientific_name>\r
6827                               <rank>species</rank>\r
6828                             </taxonomy>\r
6829                           </clade>\r
6830                           <clade>\r
6831                             <taxonomy>\r
6832                               <id provider="uniprot">572264</id>\r
6833                               <code>BACC3</code>\r
6834                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
6835                               <rank>strain</rank>\r
6836                             </taxonomy>\r
6837                           </clade>\r
6838                         </clade>\r
6839                         <clade>\r
6840                           <taxonomy>\r
6841                             <id provider="uniprot">224308</id>\r
6842                             <code>BACSU</code>\r
6843                             <scientific_name>Bacillus subtilis (strain 168)</scientific_name>\r
6844                             <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>\r
6845                           </taxonomy>\r
6846                         </clade>\r
6847                       </clade>\r
6848                       <clade>\r
6849                         <name>b_206</name>\r
6850                         <clade>\r
6851                           <taxonomy>\r
6852                             <id provider="uniprot">86665</id>\r
6853                             <code>BACHD</code>\r
6854                             <scientific_name>Bacillus halodurans</scientific_name>\r
6855                             <rank>species</rank>\r
6856                           </taxonomy>\r
6857                         </clade>\r
6858                         <clade>\r
6859                           <taxonomy>\r
6860                             <id provider="uniprot">1462</id>\r
6861                             <code>GEOKA</code>\r
6862                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
6863                             <rank>species</rank>\r
6864                           </taxonomy>\r
6865                         </clade>\r
6866                       </clade>\r
6867                     </clade>\r
6868                     <clade>\r
6869                       <name>b_210</name>\r
6870                       <clade>\r
6871                         <taxonomy>\r
6872                           <id provider="uniprot">1639</id>\r
6873                           <code>LISMO</code>\r
6874                           <scientific_name>Listeria monocytogenes</scientific_name>\r
6875                           <rank>species</rank>\r
6876                         </taxonomy>\r
6877                       </clade>\r
6878                       <clade>\r
6879                         <taxonomy>\r
6880                           <id provider="uniprot">1280</id>\r
6881                           <code>STAAU</code>\r
6882                           <scientific_name>Staphylococcus aureus</scientific_name>\r
6883                           <rank>species</rank>\r
6884                         </taxonomy>\r
6885                       </clade>\r
6886                     </clade>\r
6887                   </clade>\r
6888                   <clade>\r
6889                     <taxonomy>\r
6890                       <id provider="uniprot">195103</id>\r
6891                       <code>CLOP1</code>\r
6892                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
6893                     </taxonomy>\r
6894                   </clade>\r
6895                 </clade>\r
6896                 <clade>\r
6897                   <name>Clostridia</name>\r
6898                   <taxonomy>\r
6899                     <id provider="uniprot">186801</id>\r
6900                     <scientific_name>Clostridia</scientific_name>\r
6901                     <rank>class</rank>\r
6902                   </taxonomy>\r
6903                   <clade>\r
6904                     <name>b_218</name>\r
6905                     <clade>\r
6906                       <name>b_216</name>\r
6907                       <taxonomy>\r
6908                         <id provider="uniprot">186814</id>\r
6909                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
6910                         <rank>family</rank>\r
6911                       </taxonomy>\r
6912                       <clade>\r
6913                         <taxonomy>\r
6914                           <id provider="uniprot">246194</id>\r
6915                           <code>CARHZ</code>\r
6916                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
6917                         </taxonomy>\r
6918                       </clade>\r
6919                       <clade>\r
6920                         <taxonomy>\r
6921                           <id provider="uniprot">119072</id>\r
6922                           <code>THETN</code>\r
6923                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
6924                           <rank>species</rank>\r
6925                         </taxonomy>\r
6926                       </clade>\r
6927                     </clade>\r
6928                     <clade>\r
6929                       <taxonomy>\r
6930                         <id provider="uniprot">49338</id>\r
6931                         <code>DESHA</code>\r
6932                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
6933                         <synonym>Desulfitobacterium frappieri</synonym>\r
6934                         <rank>species</rank>\r
6935                       </taxonomy>\r
6936                     </clade>\r
6937                   </clade>\r
6938                   <clade>\r
6939                     <taxonomy>\r
6940                       <id provider="uniprot">515619</id>\r
6941                       <code>EUBR3</code>\r
6942                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
6943                     </taxonomy>\r
6944                   </clade>\r
6945                 </clade>\r
6946               </clade>\r
6947               <clade>\r
6948                 <name>b_224</name>\r
6949                 <taxonomy>\r
6950                   <id provider="uniprot">188709</id>\r
6951                   <scientific_name>Thermotogaceae</scientific_name>\r
6952                   <rank>family</rank>\r
6953                 </taxonomy>\r
6954                 <clade>\r
6955                   <name>b_222</name>\r
6956                   <clade>\r
6957                     <taxonomy>\r
6958                       <id provider="uniprot">381764</id>\r
6959                       <code>FERNB</code>\r
6960                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
6961                     </taxonomy>\r
6962                   </clade>\r
6963                   <clade>\r
6964                     <taxonomy>\r
6965                       <id provider="uniprot">416591</id>\r
6966                       <code>THELT</code>\r
6967                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
6968                     </taxonomy>\r
6969                   </clade>\r
6970                 </clade>\r
6971                 <clade>\r
6972                   <taxonomy>\r
6973                     <id provider="uniprot">2336</id>\r
6974                     <code>THEMA</code>\r
6975                     <scientific_name>Thermotoga maritima</scientific_name>\r
6976                     <rank>species</rank>\r
6977                   </taxonomy>\r
6978                 </clade>\r
6979               </clade>\r
6980             </clade>\r
6981           </clade>\r
6982           <clade>\r
6983             <name>b_267</name>\r
6984             <clade>\r
6985               <name>b_263</name>\r
6986               <clade>\r
6987                 <name>b_251</name>\r
6988                 <clade>\r
6989                   <name>b_249</name>\r
6990                   <clade>\r
6991                     <name>b_245</name>\r
6992                     <clade>\r
6993                       <name>b_237</name>\r
6994                       <clade>\r
6995                         <name>b_233</name>\r
6996                         <taxonomy>\r
6997                           <id provider="uniprot">31969</id>\r
6998                           <scientific_name>Mollicutes</scientific_name>\r
6999                           <rank>class</rank>\r
7000                         </taxonomy>\r
7001                         <clade>\r
7002                           <name>b_231</name>\r
7003                           <clade>\r
7004                             <name>b_229</name>\r
7005                             <taxonomy>\r
7006                               <scientific_name>Mycoplasma</scientific_name>\r
7007                             </taxonomy>\r
7008                             <clade>\r
7009                               <taxonomy>\r
7010                                 <id provider="uniprot">2097</id>\r
7011                                 <code>MYCGE</code>\r
7012                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
7013                                 <rank>species</rank>\r
7014                               </taxonomy>\r
7015                             </clade>\r
7016                             <clade>\r
7017                               <taxonomy>\r
7018                                 <id provider="uniprot">2104</id>\r
7019                                 <code>MYCPN</code>\r
7020                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
7021                                 <rank>species</rank>\r
7022                               </taxonomy>\r
7023                             </clade>\r
7024                           </clade>\r
7025                           <clade>\r
7026                             <taxonomy>\r
7027                               <id provider="uniprot">2151</id>\r
7028                               <code>MESFL</code>\r
7029                               <scientific_name>Mesoplasma florum</scientific_name>\r
7030                               <synonym>Acholeplasma florum</synonym>\r
7031                               <rank>species</rank>\r
7032                             </taxonomy>\r
7033                           </clade>\r
7034                         </clade>\r
7035                         <clade>\r
7036                           <taxonomy>\r
7037                             <id provider="uniprot">134821</id>\r
7038                             <code>UREPA</code>\r
7039                             <scientific_name>Ureaplasma parvum</scientific_name>\r
7040                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
7041                             <rank>species</rank>\r
7042                           </taxonomy>\r
7043                         </clade>\r
7044                       </clade>\r
7045                       <clade>\r
7046                         <name>b_236</name>\r
7047                         <taxonomy>\r
7048                           <id provider="uniprot">137</id>\r
7049                           <scientific_name>Spirochaetaceae</scientific_name>\r
7050                           <rank>family</rank>\r
7051                         </taxonomy>\r
7052                         <clade>\r
7053                           <taxonomy>\r
7054                             <id provider="uniprot">139</id>\r
7055                             <code>BORBU</code>\r
7056                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
7057                             <common_name>Lyme disease spirochete</common_name>\r
7058                             <rank>species</rank>\r
7059                           </taxonomy>\r
7060                         </clade>\r
7061                         <clade>\r
7062                           <taxonomy>\r
7063                             <id provider="uniprot">160</id>\r
7064                             <code>TREPA</code>\r
7065                             <scientific_name>Treponema pallidum</scientific_name>\r
7066                             <rank>species</rank>\r
7067                           </taxonomy>\r
7068                         </clade>\r
7069                       </clade>\r
7070                     </clade>\r
7071                     <clade>\r
7072                       <name>b_244</name>\r
7073                       <clade>\r
7074                         <name>b_242</name>\r
7075                         <taxonomy>\r
7076                           <id provider="uniprot">1113537</id>\r
7077                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
7078                         </taxonomy>\r
7079                         <clade>\r
7080                           <name>b_240</name>\r
7081                           <clade>\r
7082                             <taxonomy>\r
7083                               <id provider="uniprot">83558</id>\r
7084                               <code>CHLPN</code>\r
7085                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
7086                               <synonym>Chlamydophila pneumoniae</synonym>\r
7087                               <rank>species</rank>\r
7088                             </taxonomy>\r
7089                           </clade>\r
7090                           <clade>\r
7091                             <taxonomy>\r
7092                               <id provider="uniprot">264202</id>\r
7093                               <code>CHLFF</code>\r
7094                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
7095                             </taxonomy>\r
7096                           </clade>\r
7097                         </clade>\r
7098                         <clade>\r
7099                           <taxonomy>\r
7100                             <id provider="uniprot">83560</id>\r
7101                             <code>CHLMU</code>\r
7102                             <scientific_name>Chlamydia muridarum</scientific_name>\r
7103                             <rank>species</rank>\r
7104                           </taxonomy>\r
7105                         </clade>\r
7106                       </clade>\r
7107                       <clade>\r
7108                         <taxonomy>\r
7109                           <id provider="uniprot">785</id>\r
7110                           <code>RICTY</code>\r
7111                           <scientific_name>Rickettsia typhi</scientific_name>\r
7112                           <rank>species</rank>\r
7113                         </taxonomy>\r
7114                       </clade>\r
7115                     </clade>\r
7116                   </clade>\r
7117                   <clade>\r
7118                     <taxonomy>\r
7119                       <id provider="uniprot">28211</id>\r
7120                       <scientific_name>Alphaproteobacteria</scientific_name>\r
7121                       <rank>class</rank>\r
7122                     </taxonomy>\r
7123                     <clade>\r
7124                       <taxonomy>\r
7125                         <id provider="uniprot">38323</id>\r
7126                         <code>BARHE</code>\r
7127                         <scientific_name>Bartonella henselae</scientific_name>\r
7128                         <synonym>Rochalimaea henselae</synonym>\r
7129                         <rank>species</rank>\r
7130                       </taxonomy>\r
7131                     </clade>\r
7132                     <clade>\r
7133                       <taxonomy>\r
7134                         <id provider="uniprot">198252</id>\r
7135                         <code>PELUB</code>\r
7136                         <scientific_name>Pelagibacter ubique</scientific_name>\r
7137                         <rank>species</rank>\r
7138                       </taxonomy>\r
7139                     </clade>\r
7140                     <clade>\r
7141                       <taxonomy>\r
7142                         <id provider="uniprot">780</id>\r
7143                         <scientific_name>Rickettsia</scientific_name>\r
7144                         <rank>genus</rank>\r
7145                       </taxonomy>\r
7146                       <clade>\r
7147                         <taxonomy>\r
7148                           <id provider="uniprot">391896</id>\r
7149                           <code>RICB8</code>\r
7150                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
7151                         </taxonomy>\r
7152                       </clade>\r
7153                       <clade>\r
7154                         <taxonomy>\r
7155                           <id provider="uniprot">452659</id>\r
7156                           <code>RICRO</code>\r
7157                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
7158                           <rank>strain</rank>\r
7159                         </taxonomy>\r
7160                       </clade>\r
7161                     </clade>\r
7162                   </clade>\r
7163                 </clade>\r
7164                 <clade>\r
7165                   <taxonomy>\r
7166                     <id provider="uniprot">263</id>\r
7167                     <code>FRATU</code>\r
7168                     <scientific_name>Francisella tularensis</scientific_name>\r
7169                     <rank>species</rank>\r
7170                   </taxonomy>\r
7171                 </clade>\r
7172               </clade>\r
7173               <clade>\r
7174                 <name>b_262</name>\r
7175                 <clade>\r
7176                   <name>b_260</name>\r
7177                   <clade>\r
7178                     <name>b_258</name>\r
7179                     <taxonomy>\r
7180                       <id provider="uniprot">186826</id>\r
7181                       <scientific_name>Lactobacillales</scientific_name>\r
7182                       <rank>order</rank>\r
7183                     </taxonomy>\r
7184                     <clade>\r
7185                       <name>b_256</name>\r
7186                       <taxonomy>\r
7187                         <id provider="uniprot">1300</id>\r
7188                         <scientific_name>Streptococcaceae</scientific_name>\r
7189                         <rank>family</rank>\r
7190                       </taxonomy>\r
7191                       <clade>\r
7192                         <name>b_254</name>\r
7193                         <taxonomy>\r
7194                           <id provider="uniprot">1301</id>\r
7195                           <scientific_name>Streptococcus</scientific_name>\r
7196                           <rank>genus</rank>\r
7197                         </taxonomy>\r
7198                         <clade>\r
7199                           <taxonomy>\r
7200                             <id provider="uniprot">1313</id>\r
7201                             <code>STRPN</code>\r
7202                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
7203                             <rank>species</rank>\r
7204                           </taxonomy>\r
7205                         </clade>\r
7206                         <clade>\r
7207                           <taxonomy>\r
7208                             <id provider="uniprot">1314</id>\r
7209                             <code>STRPY</code>\r
7210                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
7211                             <rank>species</rank>\r
7212                           </taxonomy>\r
7213                         </clade>\r
7214                       </clade>\r
7215                       <clade>\r
7216                         <taxonomy>\r
7217                           <id provider="uniprot">1360</id>\r
7218                           <code>LACLA</code>\r
7219                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
7220                           <synonym>Streptococcus lactis</synonym>\r
7221                           <rank>subspecies</rank>\r
7222                         </taxonomy>\r
7223                       </clade>\r
7224                     </clade>\r
7225                     <clade>\r
7226                       <taxonomy>\r
7227                         <id provider="uniprot">1579</id>\r
7228                         <code>LACAC</code>\r
7229                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
7230                         <rank>species</rank>\r
7231                       </taxonomy>\r
7232                     </clade>\r
7233                   </clade>\r
7234                   <clade>\r
7235                     <taxonomy>\r
7236                       <id provider="uniprot">216816</id>\r
7237                       <code>BIFLO</code>\r
7238                       <scientific_name>Bifidobacterium longum</scientific_name>\r
7239                       <rank>species</rank>\r
7240                     </taxonomy>\r
7241                   </clade>\r
7242                 </clade>\r
7243                 <clade>\r
7244                   <taxonomy>\r
7245                     <id provider="uniprot">851</id>\r
7246                     <code>FUSNU</code>\r
7247                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
7248                     <rank>species</rank>\r
7249                   </taxonomy>\r
7250                 </clade>\r
7251               </clade>\r
7252             </clade>\r
7253             <clade>\r
7254               <name>b_266</name>\r
7255               <taxonomy>\r
7256                 <id provider="uniprot">61434</id>\r
7257                 <scientific_name>Dehalococcoides</scientific_name>\r
7258                 <rank>genus</rank>\r
7259               </taxonomy>\r
7260               <clade>\r
7261                 <taxonomy>\r
7262                   <id provider="uniprot">243164</id>\r
7263                   <code>DEHE1</code>\r
7264                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
7265                 </taxonomy>\r
7266               </clade>\r
7267               <clade>\r
7268                 <taxonomy>\r
7269                   <id provider="uniprot">216389</id>\r
7270                   <code>DEHSB</code>\r
7271                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
7272                   <rank>species</rank>\r
7273                 </taxonomy>\r
7274               </clade>\r
7275             </clade>\r
7276           </clade>\r
7277         </clade>\r
7278         <clade>\r
7279           <name>b_277</name>\r
7280           <taxonomy>\r
7281             <id provider="uniprot">29547</id>\r
7282             <scientific_name>Epsilonproteobacteria</scientific_name>\r
7283             <rank>class</rank>\r
7284           </taxonomy>\r
7285           <clade>\r
7286             <name>b_273</name>\r
7287             <clade>\r
7288               <taxonomy>\r
7289                 <id provider="uniprot">387092</id>\r
7290                 <code>NITSB</code>\r
7291                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
7292                 <rank>species</rank>\r
7293               </taxonomy>\r
7294             </clade>\r
7295             <clade>\r
7296               <taxonomy>\r
7297                 <id provider="uniprot">387093</id>\r
7298                 <code>SULNB</code>\r
7299                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
7300                 <rank>species</rank>\r
7301               </taxonomy>\r
7302             </clade>\r
7303           </clade>\r
7304           <clade>\r
7305             <name>b_276</name>\r
7306             <taxonomy>\r
7307               <id provider="uniprot">213849</id>\r
7308               <scientific_name>Campylobacterales</scientific_name>\r
7309               <rank>order</rank>\r
7310             </taxonomy>\r
7311             <clade>\r
7312               <taxonomy>\r
7313                 <id provider="uniprot">197</id>\r
7314                 <code>CAMJE</code>\r
7315                 <scientific_name>Campylobacter jejuni</scientific_name>\r
7316                 <rank>species</rank>\r
7317               </taxonomy>\r
7318             </clade>\r
7319             <clade>\r
7320               <taxonomy>\r
7321                 <id provider="uniprot">357544</id>\r
7322                 <code>HELPH</code>\r
7323                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
7324               </taxonomy>\r
7325             </clade>\r
7326           </clade>\r
7327         </clade>\r
7328       </clade>\r
7329       <clade>\r
7330         <taxonomy>\r
7331           <id provider="uniprot">63363</id>\r
7332           <code>AQUAE</code>\r
7333           <scientific_name>Aquifex aeolicus</scientific_name>\r
7334           <rank>species</rank>\r
7335         </taxonomy>\r
7336       </clade>\r
7337     </clade>\r
7338   </clade>\r
7339 </phylogeny>\r
7340 </phyloxml>