more species added
[jalview.git] / forester / data / tol_151.xml
1 <?xml version="1.0" encoding="UTF-8"?>\r
2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
3 <phylogeny rooted="true" rerootable="false">\r
4   <clade>\r
5     <taxonomy>\r
6       <id provider="uniprot">131567</id>\r
7       <scientific_name>cellular organisms</scientific_name>\r
8     </taxonomy>\r
9     <clade>\r
10       <taxonomy>\r
11         <scientific_name>Neomura</scientific_name>\r
12       </taxonomy>\r
13       <clade>\r
14         <taxonomy>\r
15           <id provider="uniprot">2759</id>\r
16           <scientific_name>Eukaryota</scientific_name>\r
17           <rank>superkingdom</rank>\r
18         </taxonomy>\r
19         <clade>\r
20           <name>Unikonta</name>\r
21           <clade>\r
22             <taxonomy>\r
23               <id provider="uniprot">33154</id>\r
24               <scientific_name>Opisthokonta</scientific_name>\r
25               <common_name>Fungi/Metazoa group</common_name>\r
26             </taxonomy>\r
27             <clade>\r
28               <taxonomy>\r
29                 <scientific_name>Holozoa</scientific_name>\r
30               </taxonomy>\r
31               <clade>\r
32                 <name>Choanoflagellatea &amp; Metazoa</name>\r
33                 <clade>\r
34                   <taxonomy>\r
35                     <id provider="uniprot">33208</id>\r
36                     <scientific_name>Metazoa</scientific_name>\r
37                     <rank>kingdom</rank>\r
38                   </taxonomy>\r
39                   <clade>\r
40                     <taxonomy>\r
41                       <id provider="uniprot">6072</id>\r
42                       <scientific_name>Eumetazoa</scientific_name>\r
43                     </taxonomy>\r
44                     <reference doi="10.1038/nature06614">\r
45                     </reference>\r
46                     <clade>\r
47                       <name>Bilateria &amp; Cnidaria</name>\r
48                       <clade>\r
49                         <taxonomy>\r
50                           <id provider="uniprot">33213</id>\r
51                           <scientific_name>Bilateria</scientific_name>\r
52                         </taxonomy>\r
53                         <clade>\r
54                           <taxonomy>\r
55                             <id provider="uniprot">33511</id>\r
56                             <scientific_name>Deuterostomia</scientific_name>\r
57                           </taxonomy>\r
58                           <reference doi="10.1038/nature04336">\r
59                           </reference>\r
60                           <clade>\r
61                             <taxonomy>\r
62                               <id provider="uniprot">7711</id>\r
63                               <scientific_name>Chordata</scientific_name>\r
64                               <rank>phylum</rank>\r
65                             </taxonomy>\r
66                             <clade>\r
67                               <name>Urochordata &amp; Vertebrata</name>\r
68                               <clade>\r
69                                 <taxonomy>\r
70                                   <id provider="uniprot">7742</id>\r
71                                   <scientific_name>Vertebrata</scientific_name>\r
72                                 </taxonomy>\r
73                                 <clade>\r
74                                   <taxonomy>\r
75                                     <id provider="uniprot">7776</id>\r
76                                     <scientific_name>Gnathostomata</scientific_name>\r
77                                     <common_name>jawed vertebrates</common_name>\r
78                                     <rank>superclass</rank>\r
79                                   </taxonomy>\r
80                                   <clade>\r
81                                     <taxonomy>\r
82                                       <id provider="uniprot">117571</id>\r
83                                       <scientific_name>Euteleostomi</scientific_name>\r
84                                       <common_name>bony vertebrates</common_name>\r
85                                     </taxonomy>\r
86                                     <clade>\r
87                                       <taxonomy>\r
88                                         <id provider="uniprot">8287</id>\r
89                                         <scientific_name>Sarcopterygii</scientific_name>\r
90                                         <common_name>lobe-finned fish</common_name>\r
91                                       </taxonomy>\r
92                                       <clade>\r
93                                         <taxonomy>\r
94                                           <id provider="uniprot">32523</id>\r
95                                           <scientific_name>Tetrapoda</scientific_name>\r
96                                         </taxonomy>\r
97                                         <clade>\r
98                                           <taxonomy>\r
99                                             <id provider="uniprot">32524</id>\r
100                                             <scientific_name>Amniota</scientific_name>\r
101                                           </taxonomy>\r
102                                           <clade>\r
103                                             <taxonomy>\r
104                                               <id provider="uniprot">40674</id>\r
105                                               <scientific_name>Mammalia</scientific_name>\r
106                                               <rank>class</rank>\r
107                                             </taxonomy>\r
108                                             <clade>\r
109                                               <name>Theria</name>\r
110                                               <clade>\r
111                                                 <taxonomy>\r
112                                                   <id provider="uniprot">9347</id>\r
113                                                   <scientific_name>Eutheria</scientific_name>\r
114                                                   <common_name>Placental mammals</common_name>\r
115                                                 </taxonomy>\r
116                                                 <reference doi="10.1002/bies.200900053">\r
117                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
118                                                 </reference>\r
119                                                 <clade>\r
120                                                   <taxonomy>\r
121                                                     <scientific_name>Boreoeutheria</scientific_name>\r
122                                                     <synonym>Boreotheria</synonym>\r
123                                                   </taxonomy>\r
124                                                   <clade>\r
125                                                     <taxonomy>\r
126                                                       <id provider="uniprot">314146</id>\r
127                                                       <scientific_name>Euarchontoglires</scientific_name>\r
128                                                       <rank>superorder</rank>\r
129                                                     </taxonomy>\r
130                                                     <clade>\r
131                                                       <taxonomy>\r
132                                                         <scientific_name>Euarchonta</scientific_name>\r
133                                                       </taxonomy>\r
134                                                       <clade>\r
135                                                         <taxonomy>\r
136                                                           <id provider="uniprot">9443</id>\r
137                                                           <scientific_name>Primates</scientific_name>\r
138                                                           <rank>order</rank>\r
139                                                         </taxonomy>\r
140                                                         <clade>\r
141                                                           <taxonomy>\r
142                                                             <id provider="uniprot">376913</id>\r
143                                                             <scientific_name>Haplorrhini</scientific_name>\r
144                                                             <rank>suborder</rank>\r
145                                                           </taxonomy>\r
146                                                           <clade>\r
147                                                             <taxonomy>\r
148                                                               <id provider="uniprot">314293</id>\r
149                                                               <scientific_name>Simiiformes</scientific_name>\r
150                                                               <rank>infraorder</rank>\r
151                                                             </taxonomy>\r
152                                                             <clade>\r
153                                                               <taxonomy>\r
154                                                                 <id provider="uniprot">9526</id>\r
155                                                                 <scientific_name>Catarrhini</scientific_name>\r
156                                                               </taxonomy>\r
157                                                               <clade>\r
158                                                                 <taxonomy>\r
159                                                                   <id provider="uniprot">314295</id>\r
160                                                                   <scientific_name>Hominoidea</scientific_name>\r
161                                                                   <common_name>Apes</common_name>\r
162                                                                   <rank>superfamily</rank>\r
163                                                                 </taxonomy>\r
164                                                                 <clade>\r
165                                                                   <taxonomy>\r
166                                                                     <id provider="uniprot">9604</id>\r
167                                                                     <scientific_name>Hominidae</scientific_name>\r
168                                                                     <common_name>Great apes</common_name>\r
169                                                                     <rank>family</rank>\r
170                                                                   </taxonomy>\r
171                                                                   <clade>\r
172                                                                     <taxonomy>\r
173                                                                       <id provider="uniprot">207598</id>\r
174                                                                       <scientific_name>Homininae</scientific_name>\r
175                                                                       <rank>subfamily</rank>\r
176                                                                     </taxonomy>\r
177                                                                     <clade>\r
178                                                                       <taxonomy>\r
179                                                                         <scientific_name>Hominini</scientific_name>\r
180                                                                         <rank>tribe</rank>\r
181                                                                       </taxonomy>\r
182                                                                       <clade>\r
183                                                                         <taxonomy>\r
184                                                                           <id provider="uniprot">9606</id>\r
185                                                                           <code>HUMAN</code>\r
186                                                                           <scientific_name>Homo sapiens</scientific_name>\r
187                                                                           <common_name>Human</common_name>\r
188                                                                           <rank>species</rank>\r
189                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
190                                                                         </taxonomy>\r
191                                                                       </clade>\r
192                                                                       <clade>\r
193                                                                         <taxonomy>\r
194                                                                           <id provider="uniprot">9598</id>\r
195                                                                           <code>PANTR</code>\r
196                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
197                                                                           <common_name>Chimpanzee</common_name>\r
198                                                                           <rank>species</rank>\r
199                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
200                                                                         </taxonomy>\r
201                                                                       </clade>\r
202                                                                     </clade>\r
203                                                                     <clade>\r
204                                                                       <taxonomy>\r
205                                                                         <id provider="uniprot">9595</id>\r
206                                                                         <code>GORGO</code>\r
207                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
208                                                                         <common_name>Western lowland gorilla</common_name>\r
209                                                                         <rank>subspecies</rank>\r
210                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
211                                                                       </taxonomy>\r
212                                                                     </clade>\r
213                                                                   </clade>\r
214                                                                   <clade>\r
215                                                                     <taxonomy>\r
216                                                                       <id provider="uniprot">9601</id>\r
217                                                                       <code>PONAB</code>\r
218                                                                       <scientific_name>Pongo abelii</scientific_name>\r
219                                                                       <common_name>Sumatran orangutan</common_name>\r
220                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
221                                                                       <rank>species</rank>\r
222                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>\r
223                                                                     </taxonomy>\r
224                                                                   </clade>\r
225                                                                 </clade>\r
226                                                                 <clade>\r
227                                                                   <taxonomy>\r
228                                                                     <id provider="uniprot">61853</id>\r
229                                                                     <code>NOMLE</code>\r
230                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
231                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
232                                                                     <synonym>Hylobates leucogenys</synonym>\r
233                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
234                                                                     <rank>species</rank>\r
235                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
236                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
237                                                                   </taxonomy>\r
238                                                                 </clade>\r
239                                                               </clade>\r
240                                                               <clade>\r
241                                                                 <taxonomy>\r
242                                                                   <id provider="uniprot">9528</id>\r
243                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
244                                                                   <rank>subfamily</rank>\r
245                                                                 </taxonomy>\r
246                                                                 <clade>\r
247                                                                   <taxonomy>\r
248                                                                     <id provider="uniprot">9544</id>\r
249                                                                     <code>MACMU</code>\r
250                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
251                                                                     <common_name>Rhesus macaque</common_name>\r
252                                                                     <rank>species</rank>\r
253                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>\r
254                                                                   </taxonomy>\r
255                                                                 </clade>\r
256                                                                 <clade>\r
257                                                                   <taxonomy>\r
258                                                                     <id provider="uniprot">9557</id>\r
259                                                                     <code>PAPHA</code>\r
260                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
261                                                                     <common_name>Hamadryas baboon</common_name>\r
262                                                                     <rank>species</rank>\r
263                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
264                                                                   </taxonomy>\r
265                                                                 </clade>\r
266                                                               </clade>\r
267                                                             </clade>\r
268                                                             <clade>\r
269                                                               <taxonomy>\r
270                                                                 <id provider="uniprot">9483</id>\r
271                                                                 <code>CALJA</code>\r
272                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
273                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
274                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
275                                                                 <rank>species</rank>\r
276                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
277                                                               </taxonomy>\r
278                                                             </clade>\r
279                                                           </clade>\r
280                                                           <clade>\r
281                                                             <taxonomy>\r
282                                                               <id provider="uniprot">9478</id>\r
283                                                               <code>TARSY</code>\r
284                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
285                                                               <common_name>Philippine tarsier</common_name>\r
286                                                               <rank>species</rank>\r
287                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
288                                                             </taxonomy>\r
289                                                           </clade>\r
290                                                         </clade>\r
291                                                         <clade>\r
292                                                           <taxonomy>\r
293                                                             <id provider="uniprot">376911</id>\r
294                                                             <scientific_name>Strepsirrhini</scientific_name>\r
295                                                             <rank>suborder</rank>\r
296                                                           </taxonomy>\r
297                                                           <clade>\r
298                                                             <taxonomy>\r
299                                                               <id provider="uniprot">30608</id>\r
300                                                               <code>MICMU</code>\r
301                                                               <scientific_name>Microcebus murinus</scientific_name>\r
302                                                               <common_name>Lesser mouse lemur</common_name>\r
303                                                               <synonym>Gray Mouse Lemur</synonym>\r
304                                                               <rank>species</rank>\r
305                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
306                                                             </taxonomy>\r
307                                                           </clade>\r
308                                                           <clade>\r
309                                                             <taxonomy>\r
310                                                               <id provider="uniprot">30611</id>\r
311                                                               <code>OTOGA</code>\r
312                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
313                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
314                                                               <synonym>Galago garnetti</synonym>\r
315                                                               <synonym>Small-eared galago</synonym>\r
316                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
317                                                               <rank>species</rank>\r
318                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
319                                                             </taxonomy>\r
320                                                           </clade>\r
321                                                         </clade>\r
322                                                       </clade>\r
323                                                       <clade>\r
324                                                         <taxonomy>\r
325                                                           <id provider="uniprot">37347</id>\r
326                                                           <code>TUPBE</code>\r
327                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
328                                                           <common_name>Common tree shrew</common_name>\r
329                                                           <synonym>Tupaia glis belangeri</synonym>\r
330                                                           <rank>species</rank>\r
331                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
332                                                         </taxonomy>\r
333                                                       </clade>\r
334                                                     </clade>\r
335                                                     <clade>\r
336                                                       <taxonomy>\r
337                                                         <id provider="uniprot">314147</id>\r
338                                                         <scientific_name>Glires</scientific_name>\r
339                                                         <common_name>Rodents and rabbits</common_name>\r
340                                                       </taxonomy>\r
341                                                       <clade>\r
342                                                         <taxonomy>\r
343                                                           <id provider="uniprot">9989</id>\r
344                                                           <scientific_name>Rodentia</scientific_name>\r
345                                                           <rank>order</rank>\r
346                                                         </taxonomy>\r
347                                                         <clade>\r
348                                                           <name>Hystricomorpha &amp; Sciurognathi</name>\r
349                                                           <reference doi="10.1186/1471-2148-9-71">\r
350                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
351                                                           </reference>\r
352                                                           <clade>\r
353                                                             <taxonomy>\r
354                                                               <id provider="uniprot">33553</id>\r
355                                                               <scientific_name>Sciurognathi</scientific_name>\r
356                                                               <rank>suborder</rank>\r
357                                                             </taxonomy>\r
358                                                             <clade>\r
359                                                               <taxonomy>\r
360                                                                 <id provider="uniprot">337687</id>\r
361                                                                 <scientific_name>Muroidea</scientific_name>\r
362                                                               </taxonomy>\r
363                                                               <clade>\r
364                                                                 <taxonomy>\r
365                                                                   <id provider="uniprot">39107</id>\r
366                                                                   <scientific_name>Murinae</scientific_name>\r
367                                                                   <rank>subfamily</rank>\r
368                                                                 </taxonomy>\r
369                                                                 <clade>\r
370                                                                   <taxonomy>\r
371                                                                     <id provider="uniprot">10090</id>\r
372                                                                     <code>MOUSE</code>\r
373                                                                     <scientific_name>Mus musculus</scientific_name>\r
374                                                                     <common_name>Mouse</common_name>\r
375                                                                     <rank>species</rank>\r
376                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>\r
377                                                                   </taxonomy>\r
378                                                                 </clade>\r
379                                                                 <clade>\r
380                                                                   <taxonomy>\r
381                                                                     <id provider="uniprot">10116</id>\r
382                                                                     <code>RAT</code>\r
383                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
384                                                                     <common_name>Rat</common_name>\r
385                                                                     <rank>species</rank>\r
386                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
387                                                                   </taxonomy>\r
388                                                                 </clade>\r
389                                                               </clade>\r
390                                                               <clade>\r
391                                                                 <taxonomy>\r
392                                                                   <id provider="uniprot">10036</id>\r
393                                                                   <code>MESAU</code>\r
394                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
395                                                                   <common_name>Golden hamster</common_name>\r
396                                                                   <rank>species</rank>\r
397                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG</uri>\r
398                                                                 </taxonomy>\r
399                                                               </clade>\r
400                                                             </clade>\r
401                                                             <clade>\r
402                                                               <taxonomy>\r
403                                                                 <id provider="uniprot">10020</id>\r
404                                                                 <code>DIPOR</code>\r
405                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
406                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
407                                                                 <rank>species</rank>\r
408                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
409                                                               </taxonomy>\r
410                                                             </clade>\r
411                                                           </clade>\r
412                                                           <clade>\r
413                                                             <taxonomy>\r
414                                                               <id provider="uniprot">33550</id>\r
415                                                               <scientific_name>Hystricognathi</scientific_name>\r
416                                                               <rank>suborder</rank>\r
417                                                             </taxonomy>\r
418                                                             <clade>\r
419                                                               <taxonomy>\r
420                                                                 <id provider="uniprot">10141</id>\r
421                                                                 <code>CAVPO</code>\r
422                                                                 <scientific_name>Cavia porcellus</scientific_name>\r
423                                                                 <common_name>Guinea pig</common_name>\r
424                                                                 <rank>species</rank>\r
425                                                                 <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>\r
426                                                               </taxonomy>\r
427                                                             </clade>\r
428                                                             <clade>\r
429                                                               <taxonomy>\r
430                                                                 <id provider="uniprot">10181</id>\r
431                                                                 <code>HETGA</code>\r
432                                                                 <scientific_name>Heterocephalus glaber</scientific_name>\r
433                                                                 <common_name>Naked mole rat</common_name>\r
434                                                                 <rank>species</rank>\r
435                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg</uri>\r
436                                                               </taxonomy>\r
437                                                             </clade>\r
438                                                           </clade>\r
439                                                         </clade>\r
440                                                         <clade>\r
441                                                           <taxonomy>\r
442                                                             <id provider="uniprot">43179</id>\r
443                                                             <code>SPETR</code>\r
444                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
445                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
446                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
447                                                             <rank>species</rank>\r
448                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
449                                                           </taxonomy>\r
450                                                         </clade>\r
451                                                       </clade>\r
452                                                       <clade>\r
453                                                         <taxonomy>\r
454                                                           <id provider="uniprot">9975</id>\r
455                                                           <scientific_name>Lagomorpha</scientific_name>\r
456                                                           <rank>order</rank>\r
457                                                         </taxonomy>\r
458                                                         <clade>\r
459                                                           <taxonomy>\r
460                                                             <id provider="uniprot">9978</id>\r
461                                                             <code>OCHPR</code>\r
462                                                             <scientific_name>Ochotona princeps</scientific_name>\r
463                                                             <common_name>Southern American pika</common_name>\r
464                                                             <rank>species</rank>\r
465                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
466                                                           </taxonomy>\r
467                                                         </clade>\r
468                                                         <clade>\r
469                                                           <taxonomy>\r
470                                                             <id provider="uniprot">9986</id>\r
471                                                             <code>RABIT</code>\r
472                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
473                                                             <common_name>Rabbit</common_name>\r
474                                                             <rank>species</rank>\r
475                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>\r
476                                                           </taxonomy>\r
477                                                         </clade>\r
478                                                       </clade>\r
479                                                     </clade>\r
480                                                   </clade>\r
481                                                   <clade>\r
482                                                     <taxonomy>\r
483                                                       <id provider="uniprot">314145</id>\r
484                                                       <scientific_name>Laurasiatheria</scientific_name>\r
485                                                       <rank>superorder</rank>\r
486                                                     </taxonomy>\r
487                                                     <clade>\r
488                                                       <taxonomy>\r
489                                                         <scientific_name>Scrotifera</scientific_name>\r
490                                                       </taxonomy>\r
491                                                       <clade>\r
492                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
493                                                         <clade>\r
494                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
495                                                           <clade>\r
496                                                             <taxonomy>\r
497                                                               <id provider="uniprot">91561</id>\r
498                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
499                                                               <common_name>Even-toed ungulates</common_name>\r
500                                                             </taxonomy>\r
501                                                             <clade>\r
502                                                               <name>Cetruminantia &amp; Suina</name>\r
503                                                               <clade>\r
504                                                                 <taxonomy>\r
505                                                                   <scientific_name>Cetruminantia</scientific_name>\r
506                                                                 </taxonomy>\r
507                                                                 <clade>\r
508                                                                   <taxonomy>\r
509                                                                     <id provider="uniprot">9895</id>\r
510                                                                     <scientific_name>Bovidae</scientific_name>\r
511                                                                     <rank>family</rank>\r
512                                                                   </taxonomy>\r
513                                                                   <clade>\r
514                                                                     <taxonomy>\r
515                                                                       <id provider="uniprot">9913</id>\r
516                                                                       <code>BOVIN</code>\r
517                                                                       <scientific_name>Bos taurus</scientific_name>\r
518                                                                       <common_name>Bovine</common_name>\r
519                                                                       <synonym>Bos bovis</synonym>\r
520                                                                       <rank>species</rank>\r
521                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>\r
522                                                                     </taxonomy>\r
523                                                                   </clade>\r
524                                                                   <clade>\r
525                                                                     <taxonomy>\r
526                                                                       <id provider="uniprot">9940</id>\r
527                                                                       <code>SHEEP</code>\r
528                                                                       <scientific_name>Ovis aries</scientific_name>\r
529                                                                       <common_name>Sheep</common_name>\r
530                                                                       <rank>species</rank>\r
531                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
532                                                                     </taxonomy>\r
533                                                                   </clade>\r
534                                                                 </clade>\r
535                                                                 <clade>\r
536                                                                   <taxonomy>\r
537                                                                     <id provider="uniprot">9721</id>\r
538                                                                     <scientific_name>Cetacea</scientific_name>\r
539                                                                     <common_name>Whales</common_name>\r
540                                                                     <rank>order</rank>\r
541                                                                   </taxonomy>\r
542                                                                   <clade>\r
543                                                                     <taxonomy>\r
544                                                                       <id provider="uniprot">9771</id>\r
545                                                                       <code>BALMU</code>\r
546                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
547                                                                       <common_name>Blue whale</common_name>\r
548                                                                       <rank>species</rank>\r
549                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
550                                                                     </taxonomy>\r
551                                                                   </clade>\r
552                                                                   <clade>\r
553                                                                     <taxonomy>\r
554                                                                       <id provider="uniprot">9739</id>\r
555                                                                       <code>TURTR</code>\r
556                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
557                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
558                                                                       <synonym>Delphinus truncatus</synonym>\r
559                                                                       <rank>species</rank>\r
560                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
561                                                                     </taxonomy>\r
562                                                                   </clade>\r
563                                                                 </clade>\r
564                                                               </clade>\r
565                                                               <clade>\r
566                                                                 <taxonomy>\r
567                                                                   <id provider="uniprot">9823</id>\r
568                                                                   <code>PIG</code>\r
569                                                                   <scientific_name>Sus scrofa</scientific_name>\r
570                                                                   <common_name>Pig</common_name>\r
571                                                                   <rank>species</rank>\r
572                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
573                                                                 </taxonomy>\r
574                                                               </clade>\r
575                                                             </clade>\r
576                                                             <clade>\r
577                                                               <taxonomy>\r
578                                                                 <id provider="uniprot">30538</id>\r
579                                                                 <code>LAMPA</code>\r
580                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
581                                                                 <common_name>Alpaca</common_name>\r
582                                                                 <synonym>Lama pacos</synonym>\r
583                                                                 <rank>species</rank>\r
584                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>\r
585                                                               </taxonomy>\r
586                                                             </clade>\r
587                                                           </clade>\r
588                                                           <clade>\r
589                                                             <taxonomy>\r
590                                                               <id provider="uniprot">9796</id>\r
591                                                               <code>HORSE</code>\r
592                                                               <scientific_name>Equus caballus</scientific_name>\r
593                                                               <common_name>Horse</common_name>\r
594                                                               <rank>species</rank>\r
595                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
596                                                             </taxonomy>\r
597                                                           </clade>\r
598                                                         </clade>\r
599                                                         <clade>\r
600                                                           <taxonomy>\r
601                                                             <id provider="uniprot">9397</id>\r
602                                                             <scientific_name>Chiroptera</scientific_name>\r
603                                                             <common_name>Bats</common_name>\r
604                                                             <rank>order</rank>\r
605                                                           </taxonomy>\r
606                                                           <clade>\r
607                                                             <taxonomy>\r
608                                                               <id provider="uniprot">59463</id>\r
609                                                               <code>MYOLU</code>\r
610                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
611                                                               <common_name>Little brown bat</common_name>\r
612                                                               <rank>species</rank>\r
613                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
614                                                             </taxonomy>\r
615                                                           </clade>\r
616                                                           <clade>\r
617                                                             <taxonomy>\r
618                                                               <id provider="uniprot">132908</id>\r
619                                                               <code>PTEVA</code>\r
620                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
621                                                               <common_name>Large flying fox</common_name>\r
622                                                               <rank>species</rank>\r
623                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
624                                                             </taxonomy>\r
625                                                           </clade>\r
626                                                         </clade>\r
627                                                       </clade>\r
628                                                       <clade>\r
629                                                         <name>Carnivora</name>\r
630                                                         <taxonomy>\r
631                                                           <id provider="uniprot">33554</id>\r
632                                                           <scientific_name>Carnivora</scientific_name>\r
633                                                           <rank>order</rank>\r
634                                                         </taxonomy>\r
635                                                         <clade>\r
636                                                           <taxonomy>\r
637                                                             <id provider="uniprot">379584</id>\r
638                                                             <scientific_name>Caniformia</scientific_name>\r
639                                                             <rank>suborder</rank>\r
640                                                           </taxonomy>\r
641                                                           <clade>\r
642                                                             <taxonomy>\r
643                                                               <id provider="uniprot">9646</id>\r
644                                                               <code>AILME</code>\r
645                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
646                                                               <common_name>Giant panda</common_name>\r
647                                                               <rank>species</rank>\r
648                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
649                                                             </taxonomy>\r
650                                                           </clade>\r
651                                                           <clade>\r
652                                                             <taxonomy>\r
653                                                               <id provider="uniprot">9615</id>\r
654                                                               <code>CANFA</code>\r
655                                                               <scientific_name>Canis familiaris</scientific_name>\r
656                                                               <common_name>Dog</common_name>\r
657                                                               <synonym>Canis lupus familiaris</synonym>\r
658                                                               <rank>subspecies</rank>\r
659                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
660                                                             </taxonomy>\r
661                                                           </clade>\r
662                                                         </clade>\r
663                                                         <clade>\r
664                                                           <taxonomy>\r
665                                                             <id provider="uniprot">9685</id>\r
666                                                             <code>FELCA</code>\r
667                                                             <scientific_name>Felis catus</scientific_name>\r
668                                                             <common_name>Cat</common_name>\r
669                                                             <synonym>Felis silvestris catus</synonym>\r
670                                                             <rank>species</rank>\r
671                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
672                                                           </taxonomy>\r
673                                                         </clade>\r
674                                                       </clade>\r
675                                                     </clade>\r
676                                                     <clade>\r
677                                                       <taxonomy>\r
678                                                         <id provider="uniprot">9362</id>\r
679                                                         <scientific_name>Insectivora</scientific_name>\r
680                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
681                                                         <rank>order</rank>\r
682                                                       </taxonomy>\r
683                                                       <clade>\r
684                                                         <taxonomy>\r
685                                                           <id provider="uniprot">9365</id>\r
686                                                           <code>ERIEU</code>\r
687                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
688                                                           <common_name>Western European hedgehog</common_name>\r
689                                                           <rank>species</rank>\r
690                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
691                                                         </taxonomy>\r
692                                                       </clade>\r
693                                                       <clade>\r
694                                                         <taxonomy>\r
695                                                           <id provider="uniprot">42254</id>\r
696                                                           <code>SORAR</code>\r
697                                                           <scientific_name>Sorex araneus</scientific_name>\r
698                                                           <common_name>Eurasian common shrew</common_name>\r
699                                                           <synonym>European shrew</synonym>\r
700                                                           <rank>species</rank>\r
701                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
702                                                         </taxonomy>\r
703                                                       </clade>\r
704                                                     </clade>\r
705                                                   </clade>\r
706                                                 </clade>\r
707                                                 <clade>\r
708                                                   <taxonomy>\r
709                                                     <scientific_name>Atlantogenata</scientific_name>\r
710                                                   </taxonomy>\r
711                                                   <clade>\r
712                                                     <taxonomy>\r
713                                                       <id provider="uniprot">311790</id>\r
714                                                       <scientific_name>Afrotheria</scientific_name>\r
715                                                       <rank>superorder</rank>\r
716                                                     </taxonomy>\r
717                                                     <clade>\r
718                                                       <taxonomy>\r
719                                                         <scientific_name>Paenungulata</scientific_name>\r
720                                                       </taxonomy>\r
721                                                       <clade>\r
722                                                         <taxonomy>\r
723                                                           <id provider="uniprot">9785</id>\r
724                                                           <code>LOXAF</code>\r
725                                                           <scientific_name>Loxodonta africana</scientific_name>\r
726                                                           <common_name>African savanna elephant</common_name>\r
727                                                           <rank>species</rank>\r
728                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
729                                                         </taxonomy>\r
730                                                       </clade>\r
731                                                       <clade>\r
732                                                         <taxonomy>\r
733                                                           <id provider="uniprot">9813</id>\r
734                                                           <code>PROCA</code>\r
735                                                           <scientific_name>Procavia capensis</scientific_name>\r
736                                                           <common_name>Cape hyrax</common_name>\r
737                                                           <synonym>Rock dassie</synonym>\r
738                                                           <rank>species</rank>\r
739                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
740                                                         </taxonomy>\r
741                                                       </clade>\r
742                                                     </clade>\r
743                                                     <clade>\r
744                                                       <taxonomy>\r
745                                                         <id provider="uniprot">9371</id>\r
746                                                         <code>ECHTE</code>\r
747                                                         <scientific_name>Echinops telfairi</scientific_name>\r
748                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
749                                                         <rank>species</rank>\r
750                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
751                                                       </taxonomy>\r
752                                                     </clade>\r
753                                                   </clade>\r
754                                                   <clade>\r
755                                                     <taxonomy>\r
756                                                       <id provider="uniprot">9348</id>\r
757                                                       <scientific_name>Xenarthra</scientific_name>\r
758                                                       <synonym>Edentata</synonym>\r
759                                                       <rank>superorder</rank>\r
760                                                     </taxonomy>\r
761                                                     <clade>\r
762                                                       <taxonomy>\r
763                                                         <id provider="uniprot">9358</id>\r
764                                                         <code>CHOHO</code>\r
765                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
766                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
767                                                         <rank>species</rank>\r
768                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
769                                                       </taxonomy>\r
770                                                     </clade>\r
771                                                     <clade>\r
772                                                       <taxonomy>\r
773                                                         <id provider="uniprot">9361</id>\r
774                                                         <code>DASNO</code>\r
775                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
776                                                         <common_name>Nine-banded armadillo</common_name>\r
777                                                         <rank>species</rank>\r
778                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
779                                                       </taxonomy>\r
780                                                     </clade>\r
781                                                   </clade>\r
782                                                 </clade>\r
783                                               </clade>\r
784                                               <clade>\r
785                                                 <taxonomy>\r
786                                                   <id provider="uniprot">9263</id>\r
787                                                   <scientific_name>Metatheria</scientific_name>\r
788                                                   <common_name>Marsupials</common_name>\r
789                                                 </taxonomy>\r
790                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
791                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
792                                                 </reference>\r
793                                                 <reference>\r
794                                                 </reference>\r
795                                                 <clade>\r
796                                                   <taxonomy>\r
797                                                     <scientific_name>Eometatheria</scientific_name>\r
798                                                   </taxonomy>\r
799                                                   <clade>\r
800                                                     <taxonomy>\r
801                                                       <id provider="uniprot">9315</id>\r
802                                                       <code>MACEU</code>\r
803                                                       <scientific_name>Macropus eugenii</scientific_name>\r
804                                                       <common_name>Tammar wallaby</common_name>\r
805                                                       <rank>species</rank>\r
806                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
807                                                     </taxonomy>\r
808                                                   </clade>\r
809                                                   <clade>\r
810                                                     <taxonomy>\r
811                                                       <id provider="uniprot">9305</id>\r
812                                                       <code>SARHA</code>\r
813                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
814                                                       <common_name>Tasmanian devil</common_name>\r
815                                                       <synonym>Sarcophilus laniarius</synonym>\r
816                                                       <rank>species</rank>\r
817                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
818                                                     </taxonomy>\r
819                                                   </clade>\r
820                                                 </clade>\r
821                                                 <clade>\r
822                                                   <taxonomy>\r
823                                                     <id provider="uniprot">13616</id>\r
824                                                     <code>MONDO</code>\r
825                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
826                                                     <common_name>Short-tailed gray opossum</common_name>\r
827                                                     <rank>species</rank>\r
828                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
829                                                   </taxonomy>\r
830                                                 </clade>\r
831                                               </clade>\r
832                                             </clade>\r
833                                             <clade>\r
834                                               <taxonomy>\r
835                                                 <id provider="uniprot">9258</id>\r
836                                                 <code>ORNAN</code>\r
837                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
838                                                 <common_name>Duckbill platypus</common_name>\r
839                                                 <rank>species</rank>\r
840                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>\r
841                                               </taxonomy>\r
842                                             </clade>\r
843                                           </clade>\r
844                                           <clade>\r
845                                             <taxonomy>\r
846                                               <id provider="uniprot">8457</id>\r
847                                               <scientific_name>Sauropsida</scientific_name>\r
848                                             </taxonomy>\r
849                                             <clade>\r
850                                               <name>Archosauria &amp; Testudines</name>\r
851                                               <reference doi="10.1038/ng.2615">\r
852                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
853                                               </reference>\r
854                                               <reference>\r
855                                               </reference>\r
856                                               <reference>\r
857                                               </reference>\r
858                                               <clade>\r
859                                                 <taxonomy>\r
860                                                   <id provider="uniprot">8492</id>\r
861                                                   <scientific_name>Archosauria</scientific_name>\r
862                                                 </taxonomy>\r
863                                                 <clade>\r
864                                                   <name>Neognathae</name>\r
865                                                   <taxonomy>\r
866                                                     <id provider="uniprot">8825</id>\r
867                                                     <scientific_name>Neognathae</scientific_name>\r
868                                                     <rank>superorder</rank>\r
869                                                   </taxonomy>\r
870                                                   <clade>\r
871                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
872                                                     <clade>\r
873                                                       <taxonomy>\r
874                                                         <id provider="uniprot">9005</id>\r
875                                                         <scientific_name>Phasianidae</scientific_name>\r
876                                                         <rank>family</rank>\r
877                                                       </taxonomy>\r
878                                                       <clade>\r
879                                                         <taxonomy>\r
880                                                           <id provider="uniprot">9031</id>\r
881                                                           <code>CHICK</code>\r
882                                                           <scientific_name>Gallus gallus</scientific_name>\r
883                                                           <common_name>Chicken</common_name>\r
884                                                           <synonym>Gallus domesticus</synonym>\r
885                                                           <rank>species</rank>\r
886                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
887                                                         </taxonomy>\r
888                                                       </clade>\r
889                                                       <clade>\r
890                                                         <taxonomy>\r
891                                                           <id provider="uniprot">9103</id>\r
892                                                           <code>MELGA</code>\r
893                                                           <scientific_name>Meleagris gallopavo</scientific_name>\r
894                                                           <common_name>Common turkey</common_name>\r
895                                                           <rank>species</rank>\r
896                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
897                                                         </taxonomy>\r
898                                                       </clade>\r
899                                                     </clade>\r
900                                                     <clade>\r
901                                                       <taxonomy>\r
902                                                         <id provider="uniprot">8839</id>\r
903                                                         <code>ANAPL</code>\r
904                                                         <scientific_name>Anas platyrhynchos</scientific_name>\r
905                                                         <common_name>Domestic duck</common_name>\r
906                                                         <synonym>Anas boschas</synonym>\r
907                                                         <rank>species</rank>\r
908                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
909                                                       </taxonomy>\r
910                                                     </clade>\r
911                                                   </clade>\r
912                                                   <clade>\r
913                                                     <taxonomy>\r
914                                                       <id provider="uniprot">59729</id>\r
915                                                       <code>TAEGU</code>\r
916                                                       <scientific_name>Taeniopygia guttata</scientific_name>\r
917                                                       <common_name>Zebra finch</common_name>\r
918                                                       <synonym>Poephila guttata</synonym>\r
919                                                       <rank>species</rank>\r
920                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
921                                                     </taxonomy>\r
922                                                   </clade>\r
923                                                 </clade>\r
924                                                 <clade>\r
925                                                   <taxonomy>\r
926                                                     <id provider="uniprot">8496</id>\r
927                                                     <code>ALLMI</code>\r
928                                                     <scientific_name>Alligator mississippiensis</scientific_name>\r
929                                                     <common_name>American alligator</common_name>\r
930                                                     <rank>species</rank>\r
931                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>\r
932                                                   </taxonomy>\r
933                                                 </clade>\r
934                                               </clade>\r
935                                               <clade>\r
936                                                 <taxonomy>\r
937                                                   <id provider="uniprot">13735</id>\r
938                                                   <code>PELSI</code>\r
939                                                   <scientific_name>Pelodiscus sinensis</scientific_name>\r
940                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>\r
941                                                   <common_name>Chinese softshell turtle</common_name>\r
942                                                   <synonym>Trionyx sinensis</synonym>\r
943                                                   <rank>species</rank>\r
944                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>\r
945                                                 </taxonomy>\r
946                                               </clade>\r
947                                             </clade>\r
948                                             <clade>\r
949                                               <taxonomy>\r
950                                                 <id provider="uniprot">28377</id>\r
951                                                 <code>ANOCA</code>\r
952                                                 <scientific_name>Anolis carolinensis</scientific_name>\r
953                                                 <authority>Voigt, 1832</authority>\r
954                                                 <common_name>Green anole</common_name>\r
955                                                 <synonym>American chameleon</synonym>\r
956                                                 <rank>species</rank>\r
957                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
958                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
959                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg</uri>\r
960                                               </taxonomy>\r
961                                             </clade>\r
962                                           </clade>\r
963                                         </clade>\r
964                                         <clade>\r
965                                           <taxonomy>\r
966                                             <id provider="uniprot">8353</id>\r
967                                             <scientific_name>Xenopus</scientific_name>\r
968                                             <rank>genus</rank>\r
969                                           </taxonomy>\r
970                                           <clade>\r
971                                             <taxonomy>\r
972                                               <id provider="uniprot">8355</id>\r
973                                               <code>XENLA</code>\r
974                                               <scientific_name>Xenopus laevis</scientific_name>\r
975                                               <authority>Daudin, 1802</authority>\r
976                                               <common_name>African clawed frog</common_name>\r
977                                               <synonym>Bufo laevis</synonym>\r
978                                               <rank>species</rank>\r
979                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
980                                             </taxonomy>\r
981                                           </clade>\r
982                                           <clade>\r
983                                             <taxonomy>\r
984                                               <id provider="uniprot">8364</id>\r
985                                               <code>XENTR</code>\r
986                                               <scientific_name>Xenopus tropicalis</scientific_name>\r
987                                               <common_name>Western clawed frog</common_name>\r
988                                               <synonym>Silurana tropicalis</synonym>\r
989                                               <rank>species</rank>\r
990                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
991                                             </taxonomy>\r
992                                           </clade>\r
993                                         </clade>\r
994                                       </clade>\r
995                                       <clade>\r
996                                         <taxonomy>\r
997                                           <id provider="uniprot">7897</id>\r
998                                           <code>LATCH</code>\r
999                                           <scientific_name>Latimeria chalumnae</scientific_name>\r
1000                                           <common_name>West Indian ocean coelacanth</common_name>\r
1001                                           <rank>species</rank>\r
1002                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>\r
1003                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>\r
1004                                         </taxonomy>\r
1005                                       </clade>\r
1006                                     </clade>\r
1007                                     <clade>\r
1008                                       <name>Teleostei</name>\r
1009                                       <taxonomy>\r
1010                                         <id provider="uniprot">32443</id>\r
1011                                         <scientific_name>Teleostei</scientific_name>\r
1012                                       </taxonomy>\r
1013                                       <clade>\r
1014                                         <taxonomy>\r
1015                                           <id provider="uniprot">123368</id>\r
1016                                           <scientific_name>Acanthomorpha</scientific_name>\r
1017                                         </taxonomy>\r
1018                                         <clade>\r
1019                                           <taxonomy>\r
1020                                             <id provider="uniprot">32485</id>\r
1021                                             <scientific_name>Percomorpha</scientific_name>\r
1022                                           </taxonomy>\r
1023                                           <clade>\r
1024                                             <taxonomy>\r
1025                                               <id provider="uniprot">129949</id>\r
1026                                               <scientific_name>Smegmamorpha</scientific_name>\r
1027                                             </taxonomy>\r
1028                                             <clade>\r
1029                                               <taxonomy>\r
1030                                                 <id provider="uniprot">32456</id>\r
1031                                                 <scientific_name>Atherinomorpha</scientific_name>\r
1032                                               </taxonomy>\r
1033                                               <clade>\r
1034                                                 <taxonomy>\r
1035                                                   <id provider="uniprot">8090</id>\r
1036                                                   <code>ORYLA</code>\r
1037                                                   <scientific_name>Oryzias latipes</scientific_name>\r
1038                                                   <common_name>Medaka fish</common_name>\r
1039                                                   <synonym>Japanese ricefish</synonym>\r
1040                                                   <rank>species</rank>\r
1041                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
1042                                                 </taxonomy>\r
1043                                               </clade>\r
1044                                               <clade>\r
1045                                                 <taxonomy>\r
1046                                                   <id provider="uniprot">8083</id>\r
1047                                                   <code>XIPMA</code>\r
1048                                                   <scientific_name>Xiphophorus maculatus</scientific_name>\r
1049                                                   <authority>Guenther, 1866</authority>\r
1050                                                   <common_name>Southern platyfish</common_name>\r
1051                                                   <synonym>Platypoecilus maculatus</synonym>\r
1052                                                   <rank>species</rank>\r
1053                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>\r
1054                                                 </taxonomy>\r
1055                                               </clade>\r
1056                                             </clade>\r
1057                                             <clade>\r
1058                                               <taxonomy>\r
1059                                                 <id provider="uniprot">69293</id>\r
1060                                                 <code>GASAC</code>\r
1061                                                 <scientific_name>Gasterosteus aculeatus</scientific_name>\r
1062                                                 <common_name>Three-spined stickleback</common_name>\r
1063                                                 <rank>species</rank>\r
1064                                                 <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>\r
1065                                               </taxonomy>\r
1066                                             </clade>\r
1067                                           </clade>\r
1068                                           <clade>\r
1069                                             <taxonomy>\r
1070                                               <id provider="uniprot">31031</id>\r
1071                                               <scientific_name>Tetraodontidae</scientific_name>\r
1072                                               <common_name>puffers</common_name>\r
1073                                               <rank>family</rank>\r
1074                                             </taxonomy>\r
1075                                             <clade>\r
1076                                               <taxonomy>\r
1077                                                 <id provider="uniprot">31033</id>\r
1078                                                 <code>TAKRU</code>\r
1079                                                 <scientific_name>Takifugu rubripes</scientific_name>\r
1080                                                 <common_name>Japanese pufferfish</common_name>\r
1081                                                 <synonym>Fugu rubripes</synonym>\r
1082                                                 <rank>species</rank>\r
1083                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
1084                                               </taxonomy>\r
1085                                             </clade>\r
1086                                             <clade>\r
1087                                               <taxonomy>\r
1088                                                 <id provider="uniprot">99883</id>\r
1089                                                 <code>TETNG</code>\r
1090                                                 <scientific_name>Tetraodon nigroviridis</scientific_name>\r
1091                                                 <common_name>Green puffer</common_name>\r
1092                                                 <synonym>Chelonodon nigroviridis</synonym>\r
1093                                                 <rank>species</rank>\r
1094                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
1095                                               </taxonomy>\r
1096                                             </clade>\r
1097                                           </clade>\r
1098                                           <clade>\r
1099                                             <taxonomy>\r
1100                                               <id provider="uniprot">8128</id>\r
1101                                               <code>ORENI</code>\r
1102                                               <scientific_name>Tilapia nilotica</scientific_name>\r
1103                                               <authority>Linnaeus, 1758</authority>\r
1104                                               <common_name>Nile tilapia</common_name>\r
1105                                               <synonym>Tilapia nilotica</synonym>\r
1106                                               <rank>species</rank>\r
1107                                               <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>\r
1108                                             </taxonomy>\r
1109                                           </clade>\r
1110                                         </clade>\r
1111                                         <clade>\r
1112                                           <taxonomy>\r
1113                                             <id provider="uniprot">8049</id>\r
1114                                             <code>GADMO</code>\r
1115                                             <scientific_name>Gadus morhua</scientific_name>\r
1116                                             <common_name>Atlantic cod</common_name>\r
1117                                             <rank>species</rank>\r
1118                                             <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
1119                                           </taxonomy>\r
1120                                         </clade>\r
1121                                       </clade>\r
1122                                       <clade>\r
1123                                         <taxonomy>\r
1124                                           <id provider="uniprot">7955</id>\r
1125                                           <code>DANRE</code>\r
1126                                           <scientific_name>Danio rerio</scientific_name>\r
1127                                           <common_name>Zebrafish</common_name>\r
1128                                           <synonym>Brachydanio rerio</synonym>\r
1129                                           <rank>species</rank>\r
1130                                           <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>\r
1131                                         </taxonomy>\r
1132                                       </clade>\r
1133                                     </clade>\r
1134                                   </clade>\r
1135                                   <clade>\r
1136                                     <taxonomy>\r
1137                                       <id provider="uniprot">7868</id>\r
1138                                       <code>CALMI</code>\r
1139                                       <scientific_name>Callorhynchus milii</scientific_name>\r
1140                                       <common_name>Australian ghost shark</common_name>\r
1141                                       <synonym>Australian ghost shark</synonym>\r
1142                                       <rank>species</rank>\r
1143                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1144                                     </taxonomy>\r
1145                                   </clade>\r
1146                                 </clade>\r
1147                                 <clade>\r
1148                                   <taxonomy>\r
1149                                     <id provider="uniprot">7757</id>\r
1150                                     <code>PETMA</code>\r
1151                                     <scientific_name>Petromyzon marinus</scientific_name>\r
1152                                     <common_name>Sea lamprey</common_name>\r
1153                                     <rank>species</rank>\r
1154                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1155                                   </taxonomy>\r
1156                                 </clade>\r
1157                               </clade>\r
1158                               <clade>\r
1159                                 <name>Urochordata</name>\r
1160                                 <taxonomy>\r
1161                                   <id provider="uniprot">7712</id>\r
1162                                   <scientific_name>Urochordata</scientific_name>\r
1163                                   <rank>subphylum</rank>\r
1164                                 </taxonomy>\r
1165                                 <clade>\r
1166                                   <taxonomy>\r
1167                                     <id provider="uniprot">7718</id>\r
1168                                     <scientific_name>Ciona</scientific_name>\r
1169                                     <rank>genus</rank>\r
1170                                   </taxonomy>\r
1171                                   <clade>\r
1172                                     <taxonomy>\r
1173                                       <id provider="uniprot">7719</id>\r
1174                                       <code>CIOIN</code>\r
1175                                       <scientific_name>Ciona intestinalis</scientific_name>\r
1176                                       <common_name>Transparent sea squirt</common_name>\r
1177                                       <synonym>Ascidia intestinalis</synonym>\r
1178                                       <rank>species</rank>\r
1179                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1180                                     </taxonomy>\r
1181                                   </clade>\r
1182                                   <clade>\r
1183                                     <taxonomy>\r
1184                                       <id provider="uniprot">51511</id>\r
1185                                       <code>CIOSA</code>\r
1186                                       <scientific_name>Ciona savignyi</scientific_name>\r
1187                                       <common_name>Pacific transparent sea squirt</common_name>\r
1188                                       <rank>species</rank>\r
1189                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1190                                     </taxonomy>\r
1191                                   </clade>\r
1192                                 </clade>\r
1193                                 <clade>\r
1194                                   <taxonomy>\r
1195                                     <id provider="ncbi">34765</id>\r
1196                                     <code>OIKDI</code>\r
1197                                     <scientific_name>Oikopleura dioica</scientific_name>\r
1198                                     <common_name>Tunicate</common_name>\r
1199                                     <rank>species</rank>\r
1200                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1201                                   </taxonomy>\r
1202                                 </clade>\r
1203                               </clade>\r
1204                             </clade>\r
1205                             <clade>\r
1206                               <taxonomy>\r
1207                                 <id provider="uniprot">7739</id>\r
1208                                 <code>BRAFL</code>\r
1209                                 <scientific_name>Branchiostoma floridae</scientific_name>\r
1210                                 <common_name>Florida lancelet</common_name>\r
1211                                 <synonym>Amphioxus</synonym>\r
1212                                 <rank>species</rank>\r
1213                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>\r
1214                               </taxonomy>\r
1215                             </clade>\r
1216                           </clade>\r
1217                           <clade>\r
1218                             <name>Hemichordata &amp; Echinodermata</name>\r
1219                             <clade>\r
1220                               <taxonomy>\r
1221                                 <id provider="uniprot">10224</id>\r
1222                                 <code>SACKO</code>\r
1223                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1224                                 <authority>Agassiz, 1873</authority>\r
1225                                 <common_name>Acorn worm</common_name>\r
1226                                 <rank>species</rank>\r
1227                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>\r
1228                               </taxonomy>\r
1229                             </clade>\r
1230                             <clade>\r
1231                               <taxonomy>\r
1232                                 <id provider="uniprot">7668</id>\r
1233                                 <code>STRPU</code>\r
1234                                 <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1235                                 <common_name>Purple sea urchin</common_name>\r
1236                                 <rank>species</rank>\r
1237                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1238                               </taxonomy>\r
1239                             </clade>\r
1240                           </clade>\r
1241                         </clade>\r
1242                         <clade>\r
1243                           <taxonomy>\r
1244                             <id provider="uniprot">33317</id>\r
1245                             <scientific_name>Protostomia</scientific_name>\r
1246                           </taxonomy>\r
1247                           <clade>\r
1248                             <taxonomy>\r
1249                               <id provider="uniprot">1206794</id>\r
1250                               <scientific_name>Ecdysozoa</scientific_name>\r
1251                             </taxonomy>\r
1252                             <reference doi="10.1098/rstb.2007.2243">\r
1253                               <desc>The evolution of the Ecdysozoa</desc>\r
1254                             </reference>\r
1255                             <clade>\r
1256                               <taxonomy>\r
1257                                 <id provider="uniprot">88770</id>\r
1258                                 <scientific_name>Panarthropoda</scientific_name>\r
1259                               </taxonomy>\r
1260                               <clade>\r
1261                                 <name>Onychophora &amp; Arthropoda</name>\r
1262                                 <taxonomy>\r
1263                                 </taxonomy>\r
1264                                 <reference doi="10.1073/pnas.1105499108">\r
1265                                   <desc>MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda</desc>\r
1266                                 </reference>\r
1267                                 <clade>\r
1268                                   <taxonomy>\r
1269                                     <id provider="uniprot">6656</id>\r
1270                                     <scientific_name>Arthropoda</scientific_name>\r
1271                                     <rank>phylum</rank>\r
1272                                   </taxonomy>\r
1273                                   <reference doi="10.1098/rspb.2010.0590">\r
1274                                     <desc>A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata</desc>\r
1275                                   </reference>\r
1276                                   <clade>\r
1277                                     <taxonomy>\r
1278                                       <id provider="uniprot">197563</id>\r
1279                                       <scientific_name>Mandibulata</scientific_name>\r
1280                                     </taxonomy>\r
1281                                     <reference doi="doi:10.1038/ncomms3485">\r
1282                                       <desc>Arthropod fossil data increase congruence of morphological and molecular phylogenies</desc>\r
1283                                     </reference>\r
1284                                     <reference>\r
1285                                     </reference>\r
1286                                     <clade>\r
1287                                       <taxonomy>\r
1288                                         <id provider="uniprot">197562</id>\r
1289                                         <scientific_name>Pancrustacea</scientific_name>\r
1290                                       </taxonomy>\r
1291                                       <clade>\r
1292                                         <taxonomy>\r
1293                                           <id provider="uniprot">6960</id>\r
1294                                           <scientific_name>Hexapoda</scientific_name>\r
1295                                           <rank>superclass</rank>\r
1296                                         </taxonomy>\r
1297                                         <clade>\r
1298                                           <taxonomy>\r
1299                                             <id provider="uniprot">50557</id>\r
1300                                             <scientific_name>Insecta</scientific_name>\r
1301                                             <common_name>true insects</common_name>\r
1302                                             <rank>class</rank>\r
1303                                           </taxonomy>\r
1304                                           <clade>\r
1305                                             <taxonomy>\r
1306                                               <id provider="uniprot">33340</id>\r
1307                                               <scientific_name>Neoptera</scientific_name>\r
1308                                               <rank>subclass</rank>\r
1309                                             </taxonomy>\r
1310                                             <clade>\r
1311                                               <taxonomy>\r
1312                                                 <id provider="uniprot">33392</id>\r
1313                                                 <scientific_name>Endopterygota</scientific_name>\r
1314                                                 <rank>infraclass</rank>\r
1315                                               </taxonomy>\r
1316                                               <clade>\r
1317                                                 <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>\r
1318                                                 <clade>\r
1319                                                   <name>Lepidoptera &amp; Diptera</name>\r
1320                                                   <clade>\r
1321                                                     <taxonomy>\r
1322                                                       <id provider="uniprot">7147</id>\r
1323                                                       <scientific_name>Diptera</scientific_name>\r
1324                                                       <rank>order</rank>\r
1325                                                     </taxonomy>\r
1326                                                     <clade>\r
1327                                                       <taxonomy>\r
1328                                                         <id provider="uniprot">7215</id>\r
1329                                                         <scientific_name>Drosophila</scientific_name>\r
1330                                                         <common_name>fruit flies</common_name>\r
1331                                                         <rank>genus</rank>\r
1332                                                       </taxonomy>\r
1333                                                       <reference doi="10.1534/genetics.111.126540">\r
1334                                                         <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
1335                                                       </reference>\r
1336                                                       <clade>\r
1337                                                         <taxonomy>\r
1338                                                           <id provider="uniprot">32341</id>\r
1339                                                           <scientific_name>Sophophora</scientific_name>\r
1340                                                           <rank>subgenus</rank>\r
1341                                                         </taxonomy>\r
1342                                                         <clade>\r
1343                                                           <name>melanogaster &amp; pseudoobscura subgroups</name>\r
1344                                                           <clade>\r
1345                                                             <taxonomy>\r
1346                                                               <id provider="uniprot">32346</id>\r
1347                                                               <scientific_name>melanogaster group</scientific_name>\r
1348                                                             </taxonomy>\r
1349                                                             <clade>\r
1350                                                               <taxonomy>\r
1351                                                                 <id provider="uniprot">32351</id>\r
1352                                                                 <scientific_name>melanogaster subgroup</scientific_name>\r
1353                                                               </taxonomy>\r
1354                                                               <clade>\r
1355                                                                 <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
1356                                                                 <clade>\r
1357                                                                   <name>DROSE &amp; DROSI &amp; DROME</name>\r
1358                                                                   <clade>\r
1359                                                                     <name>DROSE &amp; DROSI</name>\r
1360                                                                     <clade>\r
1361                                                                       <taxonomy>\r
1362                                                                         <id provider="uniprot">7238</id>\r
1363                                                                         <code>DROSE</code>\r
1364                                                                         <scientific_name>Drosophila sechellia</scientific_name>\r
1365                                                                         <common_name>Fruit fly</common_name>\r
1366                                                                         <rank>species</rank>\r
1367                                                                       </taxonomy>\r
1368                                                                     </clade>\r
1369                                                                     <clade>\r
1370                                                                       <taxonomy>\r
1371                                                                         <id provider="uniprot">7240</id>\r
1372                                                                         <code>DROSI</code>\r
1373                                                                         <scientific_name>Drosophila simulans</scientific_name>\r
1374                                                                         <common_name>Fruit fly</common_name>\r
1375                                                                         <rank>species</rank>\r
1376                                                                       </taxonomy>\r
1377                                                                     </clade>\r
1378                                                                   </clade>\r
1379                                                                   <clade>\r
1380                                                                     <taxonomy>\r
1381                                                                       <id provider="uniprot">7227</id>\r
1382                                                                       <code>DROME</code>\r
1383                                                                       <scientific_name>Drosophila melanogaster</scientific_name>\r
1384                                                                       <common_name>Fruit fly</common_name>\r
1385                                                                       <rank>species</rank>\r
1386                                                                       <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
1387                                                                     </taxonomy>\r
1388                                                                   </clade>\r
1389                                                                 </clade>\r
1390                                                                 <clade>\r
1391                                                                   <taxonomy>\r
1392                                                                     <id provider="uniprot">7245</id>\r
1393                                                                     <code>DROYA</code>\r
1394                                                                     <scientific_name>Drosophila yakuba</scientific_name>\r
1395                                                                     <common_name>Fruit fly</common_name>\r
1396                                                                     <rank>species</rank>\r
1397                                                                   </taxonomy>\r
1398                                                                 </clade>\r
1399                                                               </clade>\r
1400                                                               <clade>\r
1401                                                                 <taxonomy>\r
1402                                                                   <id provider="uniprot">7220</id>\r
1403                                                                   <code>DROER</code>\r
1404                                                                   <scientific_name>Drosophila erecta</scientific_name>\r
1405                                                                   <common_name>Fruit fly</common_name>\r
1406                                                                   <rank>species</rank>\r
1407                                                                 </taxonomy>\r
1408                                                               </clade>\r
1409                                                             </clade>\r
1410                                                             <clade>\r
1411                                                               <taxonomy>\r
1412                                                                 <id provider="uniprot">7217</id>\r
1413                                                                 <code>DROAN</code>\r
1414                                                                 <scientific_name>Drosophila ananassae</scientific_name>\r
1415                                                                 <common_name>Fruit fly</common_name>\r
1416                                                                 <rank>species</rank>\r
1417                                                               </taxonomy>\r
1418                                                             </clade>\r
1419                                                           </clade>\r
1420                                                           <clade>\r
1421                                                             <taxonomy>\r
1422                                                               <id provider="uniprot">32358</id>\r
1423                                                               <scientific_name>pseudoobscura subgroup</scientific_name>\r
1424                                                             </taxonomy>\r
1425                                                             <clade>\r
1426                                                               <taxonomy>\r
1427                                                                 <id provider="uniprot">7234</id>\r
1428                                                                 <code>DROPE</code>\r
1429                                                                 <scientific_name>Drosophila persimilis</scientific_name>\r
1430                                                                 <common_name>Fruit fly</common_name>\r
1431                                                                 <rank>species</rank>\r
1432                                                               </taxonomy>\r
1433                                                             </clade>\r
1434                                                             <clade>\r
1435                                                               <taxonomy>\r
1436                                                                 <id provider="uniprot">46245</id>\r
1437                                                                 <code>DROPS</code>\r
1438                                                                 <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1439                                                                 <common_name>Fruit fly</common_name>\r
1440                                                                 <rank>subspecies</rank>\r
1441                                                                 <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
1442                                                               </taxonomy>\r
1443                                                             </clade>\r
1444                                                           </clade>\r
1445                                                         </clade>\r
1446                                                         <clade>\r
1447                                                           <taxonomy>\r
1448                                                             <id provider="uniprot">7260</id>\r
1449                                                             <code>DROWI</code>\r
1450                                                             <scientific_name>Drosophila willistoni</scientific_name>\r
1451                                                             <common_name>Fruit fly</common_name>\r
1452                                                             <rank>species</rank>\r
1453                                                           </taxonomy>\r
1454                                                         </clade>\r
1455                                                       </clade>\r
1456                                                       <clade>\r
1457                                                         <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
1458                                                         <clade>\r
1459                                                           <name>Drosophila subgenus</name>\r
1460                                                           <clade>\r
1461                                                             <taxonomy>\r
1462                                                               <id provider="uniprot">7230</id>\r
1463                                                               <code>DROMO</code>\r
1464                                                               <scientific_name>Drosophila mojavensis</scientific_name>\r
1465                                                               <common_name>Fruit fly</common_name>\r
1466                                                               <rank>species</rank>\r
1467                                                             </taxonomy>\r
1468                                                           </clade>\r
1469                                                           <clade>\r
1470                                                             <taxonomy>\r
1471                                                               <id provider="uniprot">7244</id>\r
1472                                                               <code>DROVI</code>\r
1473                                                               <scientific_name>Drosophila virilis</scientific_name>\r
1474                                                               <common_name>Fruit fly</common_name>\r
1475                                                               <rank>species</rank>\r
1476                                                             </taxonomy>\r
1477                                                           </clade>\r
1478                                                         </clade>\r
1479                                                         <clade>\r
1480                                                           <taxonomy>\r
1481                                                             <id provider="uniprot">7222</id>\r
1482                                                             <code>DROGR</code>\r
1483                                                             <scientific_name>Drosophila grimshawi</scientific_name>\r
1484                                                             <common_name>Fruit fly</common_name>\r
1485                                                             <synonym>Idiomyia grimshawi</synonym>\r
1486                                                             <rank>species</rank>\r
1487                                                             <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
1488                                                           </taxonomy>\r
1489                                                         </clade>\r
1490                                                       </clade>\r
1491                                                     </clade>\r
1492                                                     <clade>\r
1493                                                       <taxonomy>\r
1494                                                         <id provider="uniprot">7157</id>\r
1495                                                         <scientific_name>Culicidae</scientific_name>\r
1496                                                         <common_name>mosquitos</common_name>\r
1497                                                         <rank>family</rank>\r
1498                                                       </taxonomy>\r
1499                                                       <clade>\r
1500                                                         <taxonomy>\r
1501                                                           <id provider="uniprot">7159</id>\r
1502                                                           <code>AEDAE</code>\r
1503                                                           <scientific_name>Aedes aegypti</scientific_name>\r
1504                                                           <common_name>Yellowfever mosquito</common_name>\r
1505                                                           <synonym>Culex aegypti</synonym>\r
1506                                                           <rank>species</rank>\r
1507                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1508                                                         </taxonomy>\r
1509                                                       </clade>\r
1510                                                       <clade>\r
1511                                                         <taxonomy>\r
1512                                                           <id provider="uniprot">7165</id>\r
1513                                                           <code>ANOGA</code>\r
1514                                                           <scientific_name>Anopheles gambiae</scientific_name>\r
1515                                                           <common_name>African malaria mosquito</common_name>\r
1516                                                           <rank>species</rank>\r
1517                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1518                                                         </taxonomy>\r
1519                                                       </clade>\r
1520                                                       <clade>\r
1521                                                         <taxonomy>\r
1522                                                           <id provider="uniprot">7175</id>\r
1523                                                           <code>CULPI</code>\r
1524                                                           <scientific_name>Culex pipiens</scientific_name>\r
1525                                                           <common_name>House mosquito</common_name>\r
1526                                                           <rank>species</rank>\r
1527                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg</uri>\r
1528                                                         </taxonomy>\r
1529                                                       </clade>\r
1530                                                     </clade>\r
1531                                                   </clade>\r
1532                                                   <clade>\r
1533                                                     <taxonomy>\r
1534                                                       <id provider="uniprot">104431</id>\r
1535                                                       <scientific_name>Obtectomera</scientific_name>\r
1536                                                     </taxonomy>\r
1537                                                     <clade>\r
1538                                                       <taxonomy>\r
1539                                                         <id provider="uniprot">7091</id>\r
1540                                                         <code>BOMMO</code>\r
1541                                                         <scientific_name>Bombyx mori</scientific_name>\r
1542                                                         <common_name>Silk moth</common_name>\r
1543                                                         <rank>species</rank>\r
1544                                                         <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>\r
1545                                                       </taxonomy>\r
1546                                                     </clade>\r
1547                                                     <clade>\r
1548                                                       <taxonomy>\r
1549                                                         <id provider="uniprot">13037</id>\r
1550                                                         <code>DANPL</code>\r
1551                                                         <scientific_name>Danaus plexippus</scientific_name>\r
1552                                                         <common_name>Monarch butterfly</common_name>\r
1553                                                         <rank>species</rank>\r
1554                                                         <uri>http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg</uri>\r
1555                                                         <uri>http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg</uri>\r
1556                                                       </taxonomy>\r
1557                                                     </clade>\r
1558                                                   </clade>\r
1559                                                 </clade>\r
1560                                                 <clade>\r
1561                                                   <taxonomy>\r
1562                                                     <id provider="uniprot">7400</id>\r
1563                                                     <scientific_name>Apocrita</scientific_name>\r
1564                                                     <common_name>wasps, ants and bees</common_name>\r
1565                                                   </taxonomy>\r
1566                                                   <clade>\r
1567                                                     <taxonomy>\r
1568                                                       <id provider="uniprot">7434</id>\r
1569                                                       <scientific_name>Aculeata</scientific_name>\r
1570                                                       <rank>suborder</rank>\r
1571                                                     </taxonomy>\r
1572                                                     <clade>\r
1573                                                       <taxonomy>\r
1574                                                         <id provider="uniprot">36668</id>\r
1575                                                         <scientific_name>Formicidae</scientific_name>\r
1576                                                         <common_name>ants</common_name>\r
1577                                                         <rank>family</rank>\r
1578                                                       </taxonomy>\r
1579                                                       <clade>\r
1580                                                         <taxonomy>\r
1581                                                           <id provider="uniprot">143999</id>\r
1582                                                           <scientific_name>Attini</scientific_name>\r
1583                                                           <rank>tribe</rank>\r
1584                                                         </taxonomy>\r
1585                                                         <clade>\r
1586                                                           <taxonomy>\r
1587                                                             <id provider="uniprot">12957</id>\r
1588                                                             <code>ATTCE</code>\r
1589                                                             <scientific_name>Atta cephalotes</scientific_name>\r
1590                                                             <authority>Linnaeus, 1758</authority>\r
1591                                                             <common_name>Leafcutter ant</common_name>\r
1592                                                             <rank>species</rank>\r
1593                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
1594                                                           </taxonomy>\r
1595                                                         </clade>\r
1596                                                         <clade>\r
1597                                                           <taxonomy>\r
1598                                                             <id provider="uniprot">103372</id>\r
1599                                                             <code>ACREC</code>\r
1600                                                             <scientific_name>Acromyrmex echinatior</scientific_name>\r
1601                                                             <authority>Forel, 1899</authority>\r
1602                                                             <common_name>Panamanian leafcutter ant</common_name>\r
1603                                                             <synonym>Acromyrmex octospinosus echinatior</synonym>\r
1604                                                             <rank>species</rank>\r
1605                                                             <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>\r
1606                                                           </taxonomy>\r
1607                                                         </clade>\r
1608                                                       </clade>\r
1609                                                       <clade>\r
1610                                                         <taxonomy>\r
1611                                                           <id provider="uniprot">104421</id>\r
1612                                                           <code>CAMFO</code>\r
1613                                                           <scientific_name>Camponotus floridanus</scientific_name>\r
1614                                                           <authority>Buckley, 1866</authority>\r
1615                                                           <common_name>Florida carpenter ant</common_name>\r
1616                                                           <rank>species</rank>\r
1617                                                           <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>\r
1618                                                         </taxonomy>\r
1619                                                       </clade>\r
1620                                                     </clade>\r
1621                                                     <clade>\r
1622                                                       <taxonomy>\r
1623                                                         <id provider="uniprot">7460</id>\r
1624                                                         <code>APIME</code>\r
1625                                                         <scientific_name>Apis mellifera</scientific_name>\r
1626                                                         <common_name>Honeybee</common_name>\r
1627                                                         <rank>species</rank>\r
1628                                                         <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
1629                                                       </taxonomy>\r
1630                                                     </clade>\r
1631                                                   </clade>\r
1632                                                   <clade>\r
1633                                                     <taxonomy>\r
1634                                                       <id provider="uniprot">7425</id>\r
1635                                                       <code>NASVI</code>\r
1636                                                       <scientific_name>Nasonia vitripennis</scientific_name>\r
1637                                                       <common_name>Parasitic wasp</common_name>\r
1638                                                       <rank>species</rank>\r
1639                                                       <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
1640                                                     </taxonomy>\r
1641                                                   </clade>\r
1642                                                 </clade>\r
1643                                               </clade>\r
1644                                               <clade>\r
1645                                                 <taxonomy>\r
1646                                                   <id provider="uniprot">7070</id>\r
1647                                                   <code>TRICA</code>\r
1648                                                   <scientific_name>Tribolium castaneum</scientific_name>\r
1649                                                   <common_name>Red flour beetle</common_name>\r
1650                                                   <rank>species</rank>\r
1651                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>\r
1652                                                 </taxonomy>\r
1653                                               </clade>\r
1654                                             </clade>\r
1655                                             <clade>\r
1656                                               <taxonomy>\r
1657                                                 <id provider="uniprot">33342</id>\r
1658                                                 <scientific_name>Paraneoptera</scientific_name>\r
1659                                                 <rank>infraclass</rank>\r
1660                                               </taxonomy>\r
1661                                               <clade>\r
1662                                                 <taxonomy>\r
1663                                                   <id provider="uniprot">7524</id>\r
1664                                                   <scientific_name>Hemiptera</scientific_name>\r
1665                                                   <rank>order</rank>\r
1666                                                 </taxonomy>\r
1667                                                 <clade>\r
1668                                                   <taxonomy>\r
1669                                                     <id provider="uniprot">7029</id>\r
1670                                                     <code>ACYPI</code>\r
1671                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>\r
1672                                                     <common_name>Pea aphid</common_name>\r
1673                                                     <rank>species</rank>\r
1674                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
1675                                                   </taxonomy>\r
1676                                                 </clade>\r
1677                                                 <clade>\r
1678                                                   <taxonomy>\r
1679                                                     <id provider="uniprot">13249</id>\r
1680                                                     <code>RHOPR</code>\r
1681                                                     <scientific_name>Rhodnius prolixus</scientific_name>\r
1682                                                     <common_name>Triatomid bug</common_name>\r
1683                                                     <rank>species</rank>\r
1684                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
1685                                                   </taxonomy>\r
1686                                                 </clade>\r
1687                                               </clade>\r
1688                                               <clade>\r
1689                                                 <taxonomy>\r
1690                                                   <id provider="uniprot">121224</id>\r
1691                                                   <code>PEDHC</code>\r
1692                                                   <scientific_name>Pediculus humanus subsp. corporis</scientific_name>\r
1693                                                   <common_name>Body louse</common_name>\r
1694                                                   <rank>subspecies</rank>\r
1695                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>\r
1696                                                 </taxonomy>\r
1697                                               </clade>\r
1698                                             </clade>\r
1699                                           </clade>\r
1700                                           <clade>\r
1701                                             <taxonomy>\r
1702                                               <id provider="uniprot">568273</id>\r
1703                                               <scientific_name>Machilis germanica</scientific_name>\r
1704                                               <rank>species</rank>\r
1705                                               <uri>http://www.naturefg.com/images/c-animals/machilis.jpg</uri>\r
1706                                             </taxonomy>\r
1707                                           </clade>\r
1708                                         </clade>\r
1709                                         <clade>\r
1710                                           <taxonomy>\r
1711                                             <id provider="uniprot">383857</id>\r
1712                                             <scientific_name>Campodea fragilis</scientific_name>\r
1713                                             <rank>species</rank>\r
1714                                             <uri>http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg</uri>\r
1715                                           </taxonomy>\r
1716                                         </clade>\r
1717                                       </clade>\r
1718                                       <clade>\r
1719                                         <taxonomy>\r
1720                                           <id provider="uniprot">6657</id>\r
1721                                           <scientific_name>Crustacea</scientific_name>\r
1722                                           <rank>subphylum</rank>\r
1723                                         </taxonomy>\r
1724                                         <clade>\r
1725                                           <taxonomy>\r
1726                                             <id provider="uniprot">6658</id>\r
1727                                             <scientific_name>Branchiopoda</scientific_name>\r
1728                                             <rank>class</rank>\r
1729                                           </taxonomy>\r
1730                                           <clade>\r
1731                                             <taxonomy>\r
1732                                               <id provider="uniprot">6661</id>\r
1733                                               <code>ARTSF</code>\r
1734                                               <scientific_name>Artemia franciscana</scientific_name>\r
1735                                               <common_name>Brine shrimp</common_name>\r
1736                                               <synonym>Artemia sanfranciscana</synonym>\r
1737                                               <rank>species</rank>\r
1738                                               <uri>http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg</uri>\r
1739                                             </taxonomy>\r
1740                                           </clade>\r
1741                                           <clade>\r
1742                                             <taxonomy>\r
1743                                               <id provider="uniprot">6669</id>\r
1744                                               <code>DAPPU</code>\r
1745                                               <scientific_name>Daphnia pulex</scientific_name>\r
1746                                               <common_name>Water flea</common_name>\r
1747                                               <rank>species</rank>\r
1748                                               <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
1749                                             </taxonomy>\r
1750                                           </clade>\r
1751                                         </clade>\r
1752                                         <clade>\r
1753                                           <taxonomy>\r
1754                                             <id provider="uniprot">6706</id>\r
1755                                             <code>HOMAM</code>\r
1756                                             <scientific_name>Homarus americanus</scientific_name>\r
1757                                             <common_name>American lobster</common_name>\r
1758                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg</uri>\r
1759                                           </taxonomy>\r
1760                                         </clade>\r
1761                                       </clade>\r
1762                                     </clade>\r
1763                                     <clade>\r
1764                                       <taxonomy>\r
1765                                         <id provider="uniprot">61985</id>\r
1766                                         <scientific_name>Myriapoda</scientific_name>\r
1767                                         <rank>subphylum</rank>\r
1768                                       </taxonomy>\r
1769                                       <clade>\r
1770                                         <taxonomy>\r
1771                                           <id provider="uniprot">7553</id>\r
1772                                           <scientific_name>Diplopoda</scientific_name>\r
1773                                           <common_name>millipedes</common_name>\r
1774                                           <rank>class</rank>\r
1775                                         </taxonomy>\r
1776                                         <clade>\r
1777                                           <taxonomy>\r
1778                                             <id provider="uniprot">118561</id>\r
1779                                             <scientific_name>Helminthomorpha</scientific_name>\r
1780                                             <rank>subclass</rank>\r
1781                                           </taxonomy>\r
1782                                           <clade>\r
1783                                             <taxonomy>\r
1784                                               <id provider="uniprot">364406</id>\r
1785                                               <code>ANTGC</code>\r
1786                                               <scientific_name>Antrokoreana gracilipes</scientific_name>\r
1787                                               <common_name>Troglobite millipede</common_name>\r
1788                                               <rank>species</rank>\r
1789                                             </taxonomy>\r
1790                                           </clade>\r
1791                                           <clade>\r
1792                                             <taxonomy>\r
1793                                               <id provider="uniprot">174156</id>\r
1794                                               <code>NARAN</code>\r
1795                                               <scientific_name>Narceus annularis</scientific_name>\r
1796                                               <common_name>Millipede</common_name>\r
1797                                               <rank>species</rank>\r
1798                                               <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
1799                                             </taxonomy>\r
1800                                           </clade>\r
1801                                         </clade>\r
1802                                         <clade>\r
1803                                           <taxonomy>\r
1804                                             <id provider="uniprot">52428</id>\r
1805                                             <scientific_name>Polyxenus lagurus</scientific_name>\r
1806                                             <common_name>bristly millipede</common_name>\r
1807                                             <rank>species</rank>\r
1808                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
1809                                           </taxonomy>\r
1810                                         </clade>\r
1811                                       </clade>\r
1812                                       <clade>\r
1813                                         <taxonomy>\r
1814                                           <id provider="uniprot">7540</id>\r
1815                                           <scientific_name>Chilopoda</scientific_name>\r
1816                                           <common_name>centipedes</common_name>\r
1817                                           <rank>class</rank>\r
1818                                         </taxonomy>\r
1819                                         <clade>\r
1820                                           <taxonomy>\r
1821                                             <id provider="uniprot">29022</id>\r
1822                                             <code>SCUCO</code>\r
1823                                             <scientific_name>Scutigera coleoptrata</scientific_name>\r
1824                                             <common_name>House centipede</common_name>\r
1825                                             <rank>species</rank>\r
1826                                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
1827                                           </taxonomy>\r
1828                                         </clade>\r
1829                                         <clade>\r
1830                                           <taxonomy>\r
1831                                             <id provider="uniprot">126957</id>\r
1832                                             <code>STRMM</code>\r
1833                                             <scientific_name>Strigamia maritima</scientific_name>\r
1834                                             <common_name>European centipede</common_name>\r
1835                                             <synonym>Geophilus maritimus</synonym>\r
1836                                             <rank>species</rank>\r
1837                                             <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
1838                                           </taxonomy>\r
1839                                         </clade>\r
1840                                       </clade>\r
1841                                     </clade>\r
1842                                   </clade>\r
1843                                   <clade>\r
1844                                     <taxonomy>\r
1845                                       <id provider="uniprot">6843</id>\r
1846                                       <scientific_name>Chelicerata</scientific_name>\r
1847                                       <rank>subphylum</rank>\r
1848                                     </taxonomy>\r
1849                                     <reference doi="10.1016/j.ympev.2009.08.014">\r
1850                                       <desc>A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)</desc>\r
1851                                     </reference>\r
1852                                     <reference>\r
1853                                     </reference>\r
1854                                     <reference>\r
1855                                     </reference>\r
1856                                     <reference>\r
1857                                     </reference>\r
1858                                     <clade>\r
1859                                       <name>Arachnida &amp; Merostomata</name>\r
1860                                       <taxonomy>\r
1861                                         <id>Sea spider</id>\r
1862                                       </taxonomy>\r
1863                                       <clade>\r
1864                                         <taxonomy>\r
1865                                           <id provider="uniprot">6854</id>\r
1866                                           <scientific_name>Arachnida</scientific_name>\r
1867                                           <rank>class</rank>\r
1868                                         </taxonomy>\r
1869                                         <clade>\r
1870                                           <taxonomy>\r
1871                                             <id provider="uniprot">6933</id>\r
1872                                             <scientific_name>Acari</scientific_name>\r
1873                                             <common_name>mites &amp; ticks</common_name>\r
1874                                             <rank>subclass</rank>\r
1875                                           </taxonomy>\r
1876                                           <clade>\r
1877                                             <taxonomy>\r
1878                                               <id provider="uniprot">6945</id>\r
1879                                               <code>IXOSC</code>\r
1880                                               <scientific_name>Ixodes scapularis</scientific_name>\r
1881                                               <common_name>Black-legged tick</common_name>\r
1882                                               <synonym>Deer tick</synonym>\r
1883                                               <rank>species</rank>\r
1884                                               <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
1885                                             </taxonomy>\r
1886                                           </clade>\r
1887                                           <clade>\r
1888                                             <taxonomy>\r
1889                                               <id provider="uniprot">32264</id>\r
1890                                               <code>TETUR</code>\r
1891                                               <scientific_name>Tetranychus urticae</scientific_name>\r
1892                                               <common_name>Two-spotted spider mite</common_name>\r
1893                                               <rank>species</rank>\r
1894                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg</uri>\r
1895                                             </taxonomy>\r
1896                                           </clade>\r
1897                                         </clade>\r
1898                                         <clade>\r
1899                                           <taxonomy>\r
1900                                             <id provider="uniprot">34649</id>\r
1901                                             <code>MESMA</code>\r
1902                                             <scientific_name>Mesobuthus martensii</scientific_name>\r
1903                                             <authority>Karsch, 1879</authority>\r
1904                                             <common_name>Manchurian scorpion</common_name>\r
1905                                             <synonym>Buthus martensi</synonym>\r
1906                                             <synonym>Buthus martensii</synonym>\r
1907                                             <rank>species</rank>\r
1908                                             <uri>http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg</uri>\r
1909                                           </taxonomy>\r
1910                                         </clade>\r
1911                                       </clade>\r
1912                                       <clade>\r
1913                                         <taxonomy>\r
1914                                           <id provider="uniprot">6850</id>\r
1915                                           <code>LIMPO</code>\r
1916                                           <scientific_name>Limulus polyphemus</scientific_name>\r
1917                                           <common_name>Atlantic horseshoe crab</common_name>\r
1918                                           <rank>species</rank>\r
1919                                           <uri>http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG</uri>\r
1920                                         </taxonomy>\r
1921                                       </clade>\r
1922                                     </clade>\r
1923                                     <clade>\r
1924                                       <taxonomy>\r
1925                                         <id provider="uniprot">258330</id>\r
1926                                         <scientific_name>Ammothea hilgendorfi</scientific_name>\r
1927                                         <rank>species</rank>\r
1928                                         <uri>http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg</uri>\r
1929                                       </taxonomy>\r
1930                                     </clade>\r
1931                                   </clade>\r
1932                                 </clade>\r
1933                                 <clade>\r
1934                                   <taxonomy>\r
1935                                     <id provider="uniprot">488523</id>\r
1936                                     <scientific_name>Euperipatoides kanangrensis</scientific_name>\r
1937                                     <authority>Reid, 1996</authority>\r
1938                                     <rank>species</rank>\r
1939                                     <uri>http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg</uri>\r
1940                                     <uri>http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg</uri>\r
1941                                   </taxonomy>\r
1942                                 </clade>\r
1943                               </clade>\r
1944                               <clade>\r
1945                                 <taxonomy>\r
1946                                   <id provider="uniprot">232323</id>\r
1947                                   <code>HYPDU</code>\r
1948                                   <scientific_name>Hypsibius dujardini</scientific_name>\r
1949                                   <common_name>Water bear</common_name>\r
1950                                   <synonym>Macrobiotus dujardini</synonym>\r
1951                                   <rank>species</rank>\r
1952                                   <uri>http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg</uri>\r
1953                                 </taxonomy>\r
1954                               </clade>\r
1955                             </clade>\r
1956                             <clade>\r
1957                               <taxonomy>\r
1958                                 <id provider="uniprot">6231</id>\r
1959                                 <scientific_name>Nematoda</scientific_name>\r
1960                                 <common_name>roundworms</common_name>\r
1961                                 <rank>phylum</rank>\r
1962                               </taxonomy>\r
1963                               <clade>\r
1964                                 <taxonomy>\r
1965                                   <id provider="uniprot">119089</id>\r
1966                                   <scientific_name>Chromadorea</scientific_name>\r
1967                                   <rank>class</rank>\r
1968                                 </taxonomy>\r
1969                                 <reference doi="10.1038/32160">\r
1970                                 </reference>\r
1971                                 <clade>\r
1972                                   <name>nematode Clade V</name>\r
1973                                   <clade>\r
1974                                     <taxonomy>\r
1975                                       <id provider="uniprot">6237</id>\r
1976                                       <scientific_name>Caenorhabditis</scientific_name>\r
1977                                       <rank>genus</rank>\r
1978                                     </taxonomy>\r
1979                                     <reference doi="10.1073/pnas.0403094101">\r
1980                                       <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>\r
1981                                     </reference>\r
1982                                     <clade>\r
1983                                       <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>\r
1984                                       <clade>\r
1985                                         <name>CAEBR &amp; CAERE &amp; CAEBE</name>\r
1986                                         <clade>\r
1987                                           <name>CAEBR &amp; CAERE</name>\r
1988                                           <clade>\r
1989                                             <taxonomy>\r
1990                                               <id provider="uniprot">6238</id>\r
1991                                               <code>CAEBR</code>\r
1992                                               <scientific_name>Caenorhabditis briggsae</scientific_name>\r
1993                                               <rank>species</rank>\r
1994                                               <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>\r
1995                                             </taxonomy>\r
1996                                           </clade>\r
1997                                           <clade>\r
1998                                             <taxonomy>\r
1999                                               <id provider="uniprot">31234</id>\r
2000                                               <code>CAERE</code>\r
2001                                               <scientific_name>Caenorhabditis remanei</scientific_name>\r
2002                                               <synonym>Caenorhabditis vulgaris</synonym>\r
2003                                               <rank>species</rank>\r
2004                                               <uri>http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg</uri>\r
2005                                             </taxonomy>\r
2006                                           </clade>\r
2007                                         </clade>\r
2008                                         <clade>\r
2009                                           <taxonomy>\r
2010                                             <id provider="uniprot">135651</id>\r
2011                                             <code>CAEBE</code>\r
2012                                             <scientific_name>Caenorhabditis brenneri</scientific_name>\r
2013                                             <common_name>Nematode worm</common_name>\r
2014                                             <synonym>Caenorhabditis CB5161</synonym>\r
2015                                             <rank>species</rank>\r
2016                                           </taxonomy>\r
2017                                         </clade>\r
2018                                       </clade>\r
2019                                       <clade>\r
2020                                         <taxonomy>\r
2021                                           <id provider="uniprot">6239</id>\r
2022                                           <code>CAEEL</code>\r
2023                                           <scientific_name>Caenorhabditis elegans</scientific_name>\r
2024                                           <rank>species</rank>\r
2025                                           <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>\r
2026                                         </taxonomy>\r
2027                                       </clade>\r
2028                                     </clade>\r
2029                                     <clade>\r
2030                                       <taxonomy>\r
2031                                         <id provider="uniprot">281687</id>\r
2032                                         <code>CAEJA</code>\r
2033                                         <scientific_name>Caenorhabditis japonica</scientific_name>\r
2034                                         <rank>species</rank>\r
2035                                       </taxonomy>\r
2036                                     </clade>\r
2037                                   </clade>\r
2038                                   <clade>\r
2039                                     <taxonomy>\r
2040                                       <id provider="uniprot">54126</id>\r
2041                                       <code>PRIPA</code>\r
2042                                       <scientific_name>Pristionchus pacificus</scientific_name>\r
2043                                       <common_name>Parasitic nematode</common_name>\r
2044                                       <rank>species</rank>\r
2045                                       <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>\r
2046                                     </taxonomy>\r
2047                                   </clade>\r
2048                                 </clade>\r
2049                                 <clade>\r
2050                                   <taxonomy>\r
2051                                     <id provider="uniprot">6296</id>\r
2052                                     <scientific_name>Onchocercidae</scientific_name>\r
2053                                     <rank>family</rank>\r
2054                                   </taxonomy>\r
2055                                   <clade>\r
2056                                     <taxonomy>\r
2057                                       <id provider="uniprot">6279</id>\r
2058                                       <code>BRUMA</code>\r
2059                                       <scientific_name>Brugia malayi</scientific_name>\r
2060                                       <common_name>Filarial nematode worm</common_name>\r
2061                                       <rank>species</rank>\r
2062                                       <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>\r
2063                                     </taxonomy>\r
2064                                   </clade>\r
2065                                   <clade>\r
2066                                     <taxonomy>\r
2067                                       <id provider="uniprot">6293</id>\r
2068                                       <code>WUCBA</code>\r
2069                                       <scientific_name>Wuchereria bancrofti</scientific_name>\r
2070                                       <rank>species</rank>\r
2071                                       <uri>http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG</uri>\r
2072                                     </taxonomy>\r
2073                                   </clade>\r
2074                                 </clade>\r
2075                               </clade>\r
2076                               <clade>\r
2077                                 <taxonomy>\r
2078                                   <id provider="uniprot">6334</id>\r
2079                                   <code>TRISP</code>\r
2080                                   <scientific_name>Trichinella spiralis</scientific_name>\r
2081                                   <common_name>Trichina worm</common_name>\r
2082                                   <rank>species</rank>\r
2083                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG</uri>\r
2084                                 </taxonomy>\r
2085                               </clade>\r
2086                             </clade>\r
2087                           </clade>\r
2088                           <clade>\r
2089                             <taxonomy>\r
2090                               <id provider="uniprot">1206795</id>\r
2091                               <scientific_name>Lophotrochozoa</scientific_name>\r
2092                             </taxonomy>\r
2093                             <clade>\r
2094                               <name>Annelida &amp; Mollusca</name>\r
2095                               <clade>\r
2096                                 <taxonomy>\r
2097                                   <id provider="uniprot">6447</id>\r
2098                                   <scientific_name>Mollusca</scientific_name>\r
2099                                   <rank>phylum</rank>\r
2100                                 </taxonomy>\r
2101                                 <clade>\r
2102                                   <taxonomy>\r
2103                                     <id provider="uniprot">6448</id>\r
2104                                     <scientific_name>Gastropoda</scientific_name>\r
2105                                     <rank>class</rank>\r
2106                                   </taxonomy>\r
2107                                   <clade>\r
2108                                     <taxonomy>\r
2109                                       <id provider="uniprot">6500</id>\r
2110                                       <code>APLCA</code>\r
2111                                       <scientific_name>Aplysia californica</scientific_name>\r
2112                                       <common_name>California sea hare</common_name>\r
2113                                       <rank>species</rank>\r
2114                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>\r
2115                                     </taxonomy>\r
2116                                   </clade>\r
2117                                   <clade>\r
2118                                     <taxonomy>\r
2119                                       <id provider="uniprot">225164</id>\r
2120                                       <code>LOTGI</code>\r
2121                                       <scientific_name>Lottia gigantea</scientific_name>\r
2122                                       <common_name>Owl limpet</common_name>\r
2123                                       <rank>species</rank>\r
2124                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>\r
2125                                     </taxonomy>\r
2126                                   </clade>\r
2127                                 </clade>\r
2128                                 <clade>\r
2129                                   <taxonomy>\r
2130                                     <id provider="uniprot">6545</id>\r
2131                                     <scientific_name>Pteriomorphia</scientific_name>\r
2132                                     <synonym>Pteriomorpha</synonym>\r
2133                                     <rank>subclass</rank>\r
2134                                   </taxonomy>\r
2135                                   <clade>\r
2136                                     <taxonomy>\r
2137                                       <id provider="uniprot">29159</id>\r
2138                                       <code>CRAGI</code>\r
2139                                       <scientific_name>Crassostrea gigas</scientific_name>\r
2140                                       <authority>Thunberg, 1793</authority>\r
2141                                       <common_name>Pacific oyster</common_name>\r
2142                                       <synonym>Crassotrea gigas</synonym>\r
2143                                       <synonym>Crassostrea angulata</synonym>\r
2144                                       <synonym>Ostrea gigas</synonym>\r
2145                                       <rank>species</rank>\r
2146                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>\r
2147                                     </taxonomy>\r
2148                                   </clade>\r
2149                                   <clade>\r
2150                                     <taxonomy>\r
2151                                       <id provider="uniprot">50426</id>\r
2152                                       <code>PINFU</code>\r
2153                                       <scientific_name>Pinctada fucata</scientific_name>\r
2154                                       <common_name>Pearl oyster</common_name>\r
2155                                       <rank>species</rank>\r
2156                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>\r
2157                                     </taxonomy>\r
2158                                   </clade>\r
2159                                 </clade>\r
2160                               </clade>\r
2161                               <clade>\r
2162                                 <taxonomy>\r
2163                                   <id provider="uniprot">6340</id>\r
2164                                   <scientific_name>Annelida</scientific_name>\r
2165                                   <rank>phylum</rank>\r
2166                                 </taxonomy>\r
2167                                 <clade>\r
2168                                   <taxonomy>\r
2169                                     <id provider="uniprot">283909</id>\r
2170                                     <code>CTEXX</code>\r
2171                                     <scientific_name>Capitella teleta</scientific_name>\r
2172                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>\r
2173                                     <synonym>Capitella sp. I</synonym>\r
2174                                     <rank>species</rank>\r
2175                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>\r
2176                                   </taxonomy>\r
2177                                 </clade>\r
2178                                 <clade>\r
2179                                   <taxonomy>\r
2180                                     <id provider="uniprot">6412</id>\r
2181                                     <code>HELRO</code>\r
2182                                     <scientific_name>Helobdella robusta</scientific_name>\r
2183                                     <common_name>Californian leech</common_name>\r
2184                                     <rank>species</rank>\r
2185                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>\r
2186                                   </taxonomy>\r
2187                                 </clade>\r
2188                               </clade>\r
2189                             </clade>\r
2190                             <clade>\r
2191                               <taxonomy>\r
2192                                 <id provider="uniprot">6157</id>\r
2193                                 <scientific_name>Platyhelminthes</scientific_name>\r
2194                                 <rank>phylum</rank>\r
2195                               </taxonomy>\r
2196                               <clade>\r
2197                                 <taxonomy>\r
2198                                   <id provider="uniprot">6178</id>\r
2199                                   <scientific_name>Trematoda</scientific_name>\r
2200                                   <rank>class</rank>\r
2201                                 </taxonomy>\r
2202                                 <clade>\r
2203                                   <taxonomy>\r
2204                                     <id provider="uniprot">6183</id>\r
2205                                     <code>SCHMA</code>\r
2206                                     <scientific_name>Schistosoma mansoni</scientific_name>\r
2207                                     <common_name>Blood fluke</common_name>\r
2208                                     <rank>species</rank>\r
2209                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>\r
2210                                   </taxonomy>\r
2211                                 </clade>\r
2212                                 <clade>\r
2213                                   <taxonomy>\r
2214                                     <id provider="uniprot">79923</id>\r
2215                                     <code>CLOSI</code>\r
2216                                     <scientific_name>Clonorchis sinensi</scientific_name>\r
2217                                     <authority>Cobbold, 1875</authority>\r
2218                                     <common_name>Chinese liver fluke</common_name>\r
2219                                     <uri>http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg</uri>\r
2220                                   </taxonomy>\r
2221                                 </clade>\r
2222                               </clade>\r
2223                               <clade>\r
2224                                 <taxonomy>\r
2225                                   <id provider="uniprot">79327</id>\r
2226                                   <code>SCHMD</code>\r
2227                                   <scientific_name>Schmidtea mediterranea</scientific_name>\r
2228                                   <common_name>Freshwater planarian flatworm</common_name>\r
2229                                   <rank>species</rank>\r
2230                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>\r
2231                                 </taxonomy>\r
2232                               </clade>\r
2233                             </clade>\r
2234                           </clade>\r
2235                         </clade>\r
2236                       </clade>\r
2237                       <clade>\r
2238                         <name>Cnidaria</name>\r
2239                         <taxonomy>\r
2240                           <id provider="uniprot">6073</id>\r
2241                           <scientific_name>Cnidaria</scientific_name>\r
2242                           <rank>phylum</rank>\r
2243                         </taxonomy>\r
2244                         <clade>\r
2245                           <taxonomy>\r
2246                             <id provider="uniprot">6102</id>\r
2247                             <scientific_name>Hexacorallia</scientific_name>\r
2248                             <synonym>Ceriantipatharia</synonym>\r
2249                             <synonym>Zoantharia</synonym>\r
2250                             <rank>subclass</rank>\r
2251                           </taxonomy>\r
2252                           <clade>\r
2253                             <taxonomy>\r
2254                               <id provider="uniprot">70779</id>\r
2255                               <code>ACRDI</code>\r
2256                               <scientific_name>Acropora digitifera</scientific_name>\r
2257                               <common_name>Staghorn coral</common_name>\r
2258                               <rank>species</rank>\r
2259                               <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>\r
2260                             </taxonomy>\r
2261                           </clade>\r
2262                           <clade>\r
2263                             <taxonomy>\r
2264                               <id provider="uniprot">45351</id>\r
2265                               <code>NEMVE</code>\r
2266                               <scientific_name>Nematostella vectensis</scientific_name>\r
2267                               <common_name>Starlet sea anemone</common_name>\r
2268                               <rank>species</rank>\r
2269                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>\r
2270                             </taxonomy>\r
2271                           </clade>\r
2272                         </clade>\r
2273                         <clade>\r
2274                           <taxonomy>\r
2275                             <id provider="uniprot">6085</id>\r
2276                             <code>HMAXX</code>\r
2277                             <scientific_name>Hydra magnipapillata</scientific_name>\r
2278                             <authority>Ito, 1947</authority>\r
2279                             <rank>species</rank>\r
2280                             <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>\r
2281                           </taxonomy>\r
2282                         </clade>\r
2283                       </clade>\r
2284                     </clade>\r
2285                     <clade>\r
2286                       <taxonomy>\r
2287                         <id provider="uniprot">10228</id>\r
2288                         <code>TRIAD</code>\r
2289                         <scientific_name>Trichoplax adhaerens</scientific_name>\r
2290                         <synonym>Trichoplax reptans</synonym>\r
2291                         <rank>species</rank>\r
2292                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>\r
2293                       </taxonomy>\r
2294                       <reference doi="10.1073/pnas.0602076103">\r
2295                       </reference>\r
2296                     </clade>\r
2297                   </clade>\r
2298                   <clade>\r
2299                     <taxonomy>\r
2300                       <id provider="uniprot">27923</id>\r
2301                       <code>MNELE</code>\r
2302                       <scientific_name>Mnemiopsis leidyi</scientific_name>\r
2303                       <authority>A. gassiz, 1865</authority>\r
2304                       <common_name>Sea walnut</common_name>\r
2305                       <synonym>Warty comb jellyfish</synonym>\r
2306                       <rank>species</rank>\r
2307                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>\r
2308                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>\r
2309                     </taxonomy>\r
2310                   </clade>\r
2311                   <clade>\r
2312                     <taxonomy>\r
2313                       <id provider="uniprot">400682</id>\r
2314                       <code>AMPQE</code>\r
2315                       <scientific_name>Amphimedon queenslandica</scientific_name>\r
2316                       <authority>Hooper &amp; Van Soest, 2006</authority>\r
2317                       <common_name>Sponge</common_name>\r
2318                       <synonym>Reniera sp. JGI-2005</synonym>\r
2319                       <rank>species</rank>\r
2320                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>\r
2321                     </taxonomy>\r
2322                   </clade>\r
2323                 </clade>\r
2324                 <clade>\r
2325                   <taxonomy>\r
2326                     <id provider="uniprot">81524</id>\r
2327                     <scientific_name>Codonosigidae</scientific_name>\r
2328                     <rank>family</rank>\r
2329                   </taxonomy>\r
2330                   <clade>\r
2331                     <taxonomy>\r
2332                       <id provider="uniprot">81824</id>\r
2333                       <code>MONBE</code>\r
2334                       <scientific_name>Monosiga brevicollis</scientific_name>\r
2335                       <common_name>Choanoflagellate</common_name>\r
2336                       <rank>species</rank>\r
2337                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>\r
2338                     </taxonomy>\r
2339                   </clade>\r
2340                   <clade>\r
2341                     <taxonomy>\r
2342                       <id provider="uniprot">946362</id>\r
2343                       <code>SALS5</code>\r
2344                       <scientific_name>Salpingoeca rosetta</scientific_name>\r
2345                       <synonym>Proterospongia sp. ATCC 50818</synonym>\r
2346                       <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
2347                       <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>\r
2348                       <rank>species</rank>\r
2349                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>\r
2350                     </taxonomy>\r
2351                   </clade>\r
2352                 </clade>\r
2353               </clade>\r
2354               <clade>\r
2355                 <name>Ichthyophonida &amp; Filasterea</name>\r
2356                 <clade>\r
2357                   <taxonomy>\r
2358                     <id provider="uniprot">198625</id>\r
2359                     <scientific_name>Ichthyophonida</scientific_name>\r
2360                     <rank>order</rank>\r
2361                   </taxonomy>\r
2362                   <clade>\r
2363                     <taxonomy>\r
2364                       <id provider="uniprot">4881</id>\r
2365                       <code>AMOPA</code>\r
2366                       <scientific_name>Amoebidium parasiticum</scientific_name>\r
2367                       <rank>species</rank>\r
2368                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>\r
2369                     </taxonomy>\r
2370                   </clade>\r
2371                   <clade>\r
2372                     <taxonomy>\r
2373                       <id provider="uniprot">72019</id>\r
2374                       <code>SARXX</code>\r
2375                       <scientific_name>Sphaeroforma arctica</scientific_name>\r
2376                       <rank>species</rank>\r
2377                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
2378                     </taxonomy>\r
2379                   </clade>\r
2380                 </clade>\r
2381                 <clade>\r
2382                   <taxonomy>\r
2383                     <scientific_name>Filasterea</scientific_name>\r
2384                   </taxonomy>\r
2385                   <reference doi="10.1371/journal.pone.0002098">\r
2386                   </reference>\r
2387                   <reference>\r
2388                   </reference>\r
2389                   <clade>\r
2390                     <taxonomy>\r
2391                       <id provider="uniprot">595528</id>\r
2392                       <code>CAPO3</code>\r
2393                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>\r
2394                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>\r
2395                     </taxonomy>\r
2396                   </clade>\r
2397                   <clade>\r
2398                     <taxonomy>\r
2399                       <id provider="uniprot">134558</id>\r
2400                       <scientific_name>Ministeria vibrans</scientific_name>\r
2401                       <rank>species</rank>\r
2402                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>\r
2403                     </taxonomy>\r
2404                   </clade>\r
2405                 </clade>\r
2406               </clade>\r
2407             </clade>\r
2408             <clade>\r
2409               <taxonomy>\r
2410                 <scientific_name>Holomycota</scientific_name>\r
2411                 <synonym>Nucletmycea</synonym>\r
2412               </taxonomy>\r
2413               <clade>\r
2414                 <taxonomy>\r
2415                   <id provider="uniprot">4751</id>\r
2416                   <scientific_name>Fungi</scientific_name>\r
2417                   <rank>kingdom</rank>\r
2418                 </taxonomy>\r
2419                 <reference doi="10.1186/1741-7007-10-47">\r
2420                   <desc>Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi</desc>\r
2421                 </reference>\r
2422                 <clade>\r
2423                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
2424                   <clade>\r
2425                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
2426                     <clade>\r
2427                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
2428                       <clade>\r
2429                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
2430                         <clade>\r
2431                           <name>Dikarya &amp; Mucoromycotina</name>\r
2432                           <clade>\r
2433                             <taxonomy>\r
2434                               <id provider="uniprot">451864</id>\r
2435                               <scientific_name>Dikarya</scientific_name>\r
2436                               <rank>subkingdom</rank>\r
2437                             </taxonomy>\r
2438                             <reference doi="10.1038/nature05110">\r
2439                             </reference>\r
2440                             <reference>\r
2441                             </reference>\r
2442                             <clade>\r
2443                               <taxonomy>\r
2444                                 <id provider="uniprot">4890</id>\r
2445                                 <scientific_name>Ascomycota</scientific_name>\r
2446                                 <rank>phylum</rank>\r
2447                               </taxonomy>\r
2448                               <clade>\r
2449                                 <name>Pezizomycotina &amp; Saccharomycetales</name>\r
2450                                 <clade>\r
2451                                   <taxonomy>\r
2452                                     <id provider="uniprot">147538</id>\r
2453                                     <scientific_name>Pezizomycotina</scientific_name>\r
2454                                     <synonym>Euascomycota</synonym>\r
2455                                     <rank>subphylum</rank>\r
2456                                   </taxonomy>\r
2457                                   <reference doi="0.3852/mycologia.98.6.1018">\r
2458                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
2459                                   </reference>\r
2460                                   <reference>\r
2461                                   </reference>\r
2462                                   <clade>\r
2463                                     <taxonomy>\r
2464                                       <id provider="uniprot">716546</id>\r
2465                                       <scientific_name>Leotiomyceta</scientific_name>\r
2466                                     </taxonomy>\r
2467                                     <clade>\r
2468                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
2469                                       <clade>\r
2470                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
2471                                         <clade>\r
2472                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
2473                                           <clade>\r
2474                                             <taxonomy>\r
2475                                               <id provider="uniprot">715989</id>\r
2476                                               <scientific_name>Sordariomyceta</scientific_name>\r
2477                                             </taxonomy>\r
2478                                             <clade>\r
2479                                               <taxonomy>\r
2480                                                 <id provider="uniprot">147550</id>\r
2481                                                 <scientific_name>Sordariomycetes</scientific_name>\r
2482                                                 <rank>class</rank>\r
2483                                               </taxonomy>\r
2484                                               <clade>\r
2485                                                 <name>Magnaporthales &amp; Hypocreales</name>\r
2486                                                 <clade>\r
2487                                                   <taxonomy>\r
2488                                                     <id provider="uniprot">5125</id>\r
2489                                                     <scientific_name>Hypocreales</scientific_name>\r
2490                                                     <rank>order</rank>\r
2491                                                   </taxonomy>\r
2492                                                   <clade>\r
2493                                                     <taxonomy>\r
2494                                                       <id provider="uniprot">398408</id>\r
2495                                                       <code>AALXX</code>\r
2496                                                       <scientific_name>Acremonium alcalophilum</scientific_name>\r
2497                                                       <rank>species</rank>\r
2498                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
2499                                                     </taxonomy>\r
2500                                                   </clade>\r
2501                                                   <clade>\r
2502                                                     <taxonomy>\r
2503                                                       <id provider="uniprot">229533</id>\r
2504                                                       <code>GIBZE</code>\r
2505                                                       <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>\r
2506                                                       <common_name>Wheat head blight fungus</common_name>\r
2507                                                       <synonym>Fusarium graminearum</synonym>\r
2508                                                       <synonym>Gibberella zeae PH-1</synonym>\r
2509                                                       <rank>strain</rank>\r
2510                                                       <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>\r
2511                                                     </taxonomy>\r
2512                                                   </clade>\r
2513                                                   <clade>\r
2514                                                     <taxonomy>\r
2515                                                       <id provider="uniprot">413071</id>\r
2516                                                       <code>HYPVG</code>\r
2517                                                       <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>\r
2518                                                       <common_name>Gliocladium virens</common_name>\r
2519                                                       <synonym>Trichoderma virens</synonym>\r
2520                                                       <synonym>Gliocladium flavofuscum</synonym>\r
2521                                                       <synonym>Trichoderma virens Gv29-8</synonym>\r
2522                                                       <synonym>Gliocladium virens</synonym>\r
2523                                                       <rank>strain</rank>\r
2524                                                       <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>\r
2525                                                     </taxonomy>\r
2526                                                   </clade>\r
2527                                                 </clade>\r
2528                                                 <clade>\r
2529                                                   <taxonomy>\r
2530                                                     <id provider="uniprot">148305</id>\r
2531                                                     <code>MAGGR</code>\r
2532                                                     <scientific_name>Magnaporthe grisea</scientific_name>\r
2533                                                     <common_name>Rice blast fungus</common_name>\r
2534                                                     <synonym>Pyricularia grisea</synonym>\r
2535                                                     <rank>species</rank>\r
2536                                                     <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>\r
2537                                                   </taxonomy>\r
2538                                                 </clade>\r
2539                                               </clade>\r
2540                                               <clade>\r
2541                                                 <taxonomy>\r
2542                                                   <id provider="uniprot">5139</id>\r
2543                                                   <scientific_name>Sordariales</scientific_name>\r
2544                                                   <rank>order</rank>\r
2545                                                 </taxonomy>\r
2546                                                 <clade>\r
2547                                                   <taxonomy>\r
2548                                                     <id provider="uniprot">35718</id>\r
2549                                                     <scientific_name>Chaetomiaceae</scientific_name>\r
2550                                                     <rank>family</rank>\r
2551                                                   </taxonomy>\r
2552                                                   <clade>\r
2553                                                     <taxonomy>\r
2554                                                       <id provider="uniprot">35719</id>\r
2555                                                       <scientific_name>Thielavia</scientific_name>\r
2556                                                       <rank>genus</rank>\r
2557                                                     </taxonomy>\r
2558                                                     <clade>\r
2559                                                       <taxonomy>\r
2560                                                         <id provider="uniprot">573729</id>\r
2561                                                         <code>THIHA</code>\r
2562                                                         <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>\r
2563                                                         <authority>(Apinis) Oorschot 1977</authority>\r
2564                                                         <synonym>Sporotrichum thermophilum</synonym>\r
2565                                                         <synonym>Myceliophthora thermophila</synonym>\r
2566                                                         <rank>species</rank>\r
2567                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
2568                                                       </taxonomy>\r
2569                                                     </clade>\r
2570                                                     <clade>\r
2571                                                       <taxonomy>\r
2572                                                         <id provider="uniprot">578455</id>\r
2573                                                         <code>THITE</code>\r
2574                                                         <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>\r
2575                                                         <synonym>Acremonium alabamense</synonym>\r
2576                                                         <synonym>Thielavia terrestris NRRL 8126</synonym>\r
2577                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
2578                                                       </taxonomy>\r
2579                                                     </clade>\r
2580                                                   </clade>\r
2581                                                   <clade>\r
2582                                                     <taxonomy>\r
2583                                                       <id provider="uniprot">306901</id>\r
2584                                                       <code>CHAGB</code>\r
2585                                                       <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>\r
2586                                                       <authority>Kunze 1817</authority>\r
2587                                                       <common_name>Soil fungus</common_name>\r
2588                                                       <rank>strain</rank>\r
2589                                                     </taxonomy>\r
2590                                                   </clade>\r
2591                                                 </clade>\r
2592                                                 <clade>\r
2593                                                   <taxonomy>\r
2594                                                     <id provider="uniprot">367110</id>\r
2595                                                     <code>NEUCR</code>\r
2596                                                     <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>\r
2597                                                     <rank>strain</rank>\r
2598                                                   </taxonomy>\r
2599                                                 </clade>\r
2600                                               </clade>\r
2601                                             </clade>\r
2602                                             <clade>\r
2603                                               <taxonomy>\r
2604                                                 <id provider="uniprot">147548</id>\r
2605                                                 <scientific_name>Leotiomycetes</scientific_name>\r
2606                                                 <rank>class</rank>\r
2607                                               </taxonomy>\r
2608                                               <clade>\r
2609                                                 <taxonomy>\r
2610                                                   <id provider="uniprot">28983</id>\r
2611                                                   <scientific_name>Sclerotiniaceae</scientific_name>\r
2612                                                   <rank>family</rank>\r
2613                                                 </taxonomy>\r
2614                                                 <clade>\r
2615                                                   <taxonomy>\r
2616                                                     <id provider="uniprot">999810</id>\r
2617                                                     <code>BOTF4</code>\r
2618                                                     <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>\r
2619                                                     <common_name>Noble rot fungus</common_name>\r
2620                                                     <synonym>Botrytis cinerea</synonym>\r
2621                                                     <rank>strain</rank>\r
2622                                                   </taxonomy>\r
2623                                                 </clade>\r
2624                                                 <clade>\r
2625                                                   <taxonomy>\r
2626                                                     <id provider="uniprot">665079</id>\r
2627                                                     <code>SCLS1</code>\r
2628                                                     <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>\r
2629                                                     <common_name>White mold</common_name>\r
2630                                                     <synonym>Whetzelinia sclerotiorum</synonym>\r
2631                                                     <rank>strain</rank>\r
2632                                                   </taxonomy>\r
2633                                                 </clade>\r
2634                                               </clade>\r
2635                                               <clade>\r
2636                                                 <taxonomy>\r
2637                                                   <id provider="uniprot">78148</id>\r
2638                                                   <scientific_name>Oidiodendron maius</scientific_name>\r
2639                                                   <rank>species</rank>\r
2640                                                 </taxonomy>\r
2641                                               </clade>\r
2642                                             </clade>\r
2643                                           </clade>\r
2644                                           <clade>\r
2645                                             <taxonomy>\r
2646                                               <id provider="uniprot">388435</id>\r
2647                                               <scientific_name>Lecanoromycetidae</scientific_name>\r
2648                                               <rank>subclass</rank>\r
2649                                             </taxonomy>\r
2650                                             <clade>\r
2651                                               <taxonomy>\r
2652                                                 <id provider="uniprot">27339</id>\r
2653                                                 <scientific_name>Cladonia grayi</scientific_name>\r
2654                                                 <synonym>Cladonia grayi Merr</synonym>\r
2655                                                 <rank>species</rank>\r
2656                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
2657                                               </taxonomy>\r
2658                                             </clade>\r
2659                                             <clade>\r
2660                                               <taxonomy>\r
2661                                                 <id provider="uniprot">107463</id>\r
2662                                                 <scientific_name>Xanthoria parietina</scientific_name>\r
2663                                                 <rank>species</rank>\r
2664                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
2665                                               </taxonomy>\r
2666                                             </clade>\r
2667                                           </clade>\r
2668                                         </clade>\r
2669                                         <clade>\r
2670                                           <taxonomy>\r
2671                                             <id provider="uniprot">147541</id>\r
2672                                             <scientific_name>Dothideomycetes</scientific_name>\r
2673                                             <common_name>bitunicate ascomycetes</common_name>\r
2674                                             <rank>class</rank>\r
2675                                           </taxonomy>\r
2676                                           <reference doi="10.3114/sim.2009.64.01">\r
2677                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
2678                                           </reference>\r
2679                                           <clade>\r
2680                                             <taxonomy>\r
2681                                               <id provider="uniprot">451867</id>\r
2682                                               <scientific_name>Dothideomycetidae</scientific_name>\r
2683                                               <rank>subclass</rank>\r
2684                                             </taxonomy>\r
2685                                             <reference doi="10.3852/mycologia.98.6.1041">\r
2686                                               <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>\r
2687                                             </reference>\r
2688                                             <reference>\r
2689                                             </reference>\r
2690                                             <reference>\r
2691                                             </reference>\r
2692                                             <clade>\r
2693                                               <taxonomy>\r
2694                                                 <id provider="uniprot">134362</id>\r
2695                                                 <scientific_name>Capnodiales</scientific_name>\r
2696                                                 <rank>order</rank>\r
2697                                               </taxonomy>\r
2698                                               <clade>\r
2699                                                 <taxonomy>\r
2700                                                   <id provider="uniprot">41254</id>\r
2701                                                   <scientific_name>Mycosphaerella</scientific_name>\r
2702                                                   <rank>genus</rank>\r
2703                                                 </taxonomy>\r
2704                                                 <clade>\r
2705                                                   <taxonomy>\r
2706                                                     <id provider="uniprot">83344</id>\r
2707                                                     <code>PFIXX</code>\r
2708                                                     <scientific_name>Pseudocercospora fijiensis</scientific_name>\r
2709                                                     <synonym>Mycosphaerella fijiensis</synonym>\r
2710                                                     <rank>species</rank>\r
2711                                                   </taxonomy>\r
2712                                                 </clade>\r
2713                                                 <clade>\r
2714                                                   <taxonomy>\r
2715                                                     <id provider="uniprot">336722</id>\r
2716                                                     <code>MYCGM</code>\r
2717                                                     <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>\r
2718                                                     <common_name>Speckled leaf blotch fungus</common_name>\r
2719                                                     <synonym>Zymoseptoria tritici IPO323</synonym>\r
2720                                                     <synonym>Mycosphaerella graminicola IPO323</synonym>\r
2721                                                     <synonym>Septoria tritici</synonym>\r
2722                                                     <rank>strain</rank>\r
2723                                                   </taxonomy>\r
2724                                                 </clade>\r
2725                                                 <clade>\r
2726                                                   <taxonomy>\r
2727                                                     <id provider="uniprot">64363</id>\r
2728                                                     <code>MYCPJ</code>\r
2729                                                     <scientific_name>Mycosphaerella pini</scientific_name>\r
2730                                                     <common_name>Red band needle blight disease fungus</common_name>\r
2731                                                     <synonym>Dothistroma septosporum</synonym>\r
2732                                                     <synonym>Dothistroma pini</synonym>\r
2733                                                     <rank>species</rank>\r
2734                                                   </taxonomy>\r
2735                                                 </clade>\r
2736                                                 <clade>\r
2737                                                   <taxonomy>\r
2738                                                     <id provider="uniprot">692275</id>\r
2739                                                     <code>MPSXX</code>\r
2740                                                     <scientific_name>Mycosphaerella populorum SO2202</scientific_name>\r
2741                                                     <synonym>Septoria musiva SO2202</synonym>\r
2742                                                     <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>\r
2743                                                   </taxonomy>\r
2744                                                 </clade>\r
2745                                               </clade>\r
2746                                               <clade>\r
2747                                                 <taxonomy>\r
2748                                                   <id provider="uniprot">430998</id>\r
2749                                                   <code>BCOXX</code>\r
2750                                                   <scientific_name>Baudoinia compniacensis</scientific_name>\r
2751                                                   <common_name>Angels&apos; Share fungus</common_name>\r
2752                                                   <synonym>Torula compniacensis</synonym>\r
2753                                                   <rank>species</rank>\r
2754                                                   <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>\r
2755                                                 </taxonomy>\r
2756                                               </clade>\r
2757                                             </clade>\r
2758                                             <clade>\r
2759                                               <taxonomy>\r
2760                                                 <id provider="uniprot">5580</id>\r
2761                                                 <code>AURPU</code>\r
2762                                                 <scientific_name>Aureobasidium pullulans</scientific_name>\r
2763                                                 <common_name>Black yeast</common_name>\r
2764                                                 <synonym>Pullularia pullulans</synonym>\r
2765                                                 <rank>species</rank>\r
2766                                               </taxonomy>\r
2767                                               <clade>\r
2768                                                 <taxonomy>\r
2769                                                   <id provider="uniprot">178873</id>\r
2770                                                   <code>APPXX</code>\r
2771                                                   <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>\r
2772                                                   <rank>varietas</rank>\r
2773                                                 </taxonomy>\r
2774                                               </clade>\r
2775                                               <clade>\r
2776                                                 <taxonomy>\r
2777                                                   <id provider="uniprot">46634</id>\r
2778                                                   <code>APMXX</code>\r
2779                                                   <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>\r
2780                                                   <rank>varietas</rank>\r
2781                                                   <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>\r
2782                                                 </taxonomy>\r
2783                                               </clade>\r
2784                                               <clade>\r
2785                                                 <taxonomy>\r
2786                                                   <id provider="uniprot">1042127</id>\r
2787                                                   <code>APSXX</code>\r
2788                                                   <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>\r
2789                                                   <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>\r
2790                                                   <rank>varietas</rank>\r
2791                                                 </taxonomy>\r
2792                                               </clade>\r
2793                                             </clade>\r
2794                                           </clade>\r
2795                                           <clade>\r
2796                                             <taxonomy>\r
2797                                               <id provider="uniprot">715340</id>\r
2798                                               <scientific_name>Pleosporineae</scientific_name>\r
2799                                               <rank>suborder</rank>\r
2800                                             </taxonomy>\r
2801                                             <clade>\r
2802                                               <taxonomy>\r
2803                                                 <id provider="uniprot">28556</id>\r
2804                                                 <scientific_name>Pleosporaceae</scientific_name>\r
2805                                                 <rank>family</rank>\r
2806                                               </taxonomy>\r
2807                                               <clade>\r
2808                                                 <name>Cochliobolus &amp; Setosphaeria</name>\r
2809                                                 <clade>\r
2810                                                   <taxonomy>\r
2811                                                     <id provider="uniprot">45130</id>\r
2812                                                     <code>COCSA</code>\r
2813                                                     <scientific_name>Cochliobolus sativus</scientific_name>\r
2814                                                     <synonym>Bipolaris sorokiniana</synonym>\r
2815                                                     <rank>species</rank>\r
2816                                                     <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
2817                                                   </taxonomy>\r
2818                                                 </clade>\r
2819                                                 <clade>\r
2820                                                   <taxonomy>\r
2821                                                     <id provider="uniprot">93612</id>\r
2822                                                     <code>SETTU</code>\r
2823                                                     <scientific_name>Setosphaeria turcica</scientific_name>\r
2824                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
2825                                                     <common_name>Northern corn leaf blight disease fungus</common_name>\r
2826                                                     <synonym>Exserohilum turcicum</synonym>\r
2827                                                     <synonym>Helminthosporium turcicum</synonym>\r
2828                                                     <rank>species</rank>\r
2829                                                   </taxonomy>\r
2830                                                 </clade>\r
2831                                               </clade>\r
2832                                               <clade>\r
2833                                                 <taxonomy>\r
2834                                                   <id provider="uniprot">426418</id>\r
2835                                                   <code>PYRTR</code>\r
2836                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
2837                                                   <common_name>Wheat tan spot fungus</common_name>\r
2838                                                   <synonym>Drechslera tritici-repentis</synonym>\r
2839                                                   <rank>strain</rank>\r
2840                                                 </taxonomy>\r
2841                                               </clade>\r
2842                                             </clade>\r
2843                                             <clade>\r
2844                                               <taxonomy>\r
2845                                                 <id provider="uniprot">321614</id>\r
2846                                                 <code>PHANO</code>\r
2847                                                 <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>\r
2848                                                 <common_name>Glume blotch fungus</common_name>\r
2849                                                 <synonym>Septoria nodorum</synonym>\r
2850                                                 <rank>strain</rank>\r
2851                                               </taxonomy>\r
2852                                             </clade>\r
2853                                           </clade>\r
2854                                         </clade>\r
2855                                       </clade>\r
2856                                       <clade>\r
2857                                         <taxonomy>\r
2858                                           <id provider="uniprot">28568</id>\r
2859                                           <scientific_name>Trichocomaceae</scientific_name>\r
2860                                           <rank>family</rank>\r
2861                                         </taxonomy>\r
2862                                         <clade>\r
2863                                           <taxonomy>\r
2864                                             <id provider="uniprot">5052</id>\r
2865                                             <scientific_name>Aspergillus</scientific_name>\r
2866                                             <rank>genus</rank>\r
2867                                           </taxonomy>\r
2868                                           <clade>\r
2869                                             <taxonomy>\r
2870                                               <id provider="uniprot">332952</id>\r
2871                                               <code>ASPFN</code>\r
2872                                               <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>\r
2873                                               <synonym>Aspergillus flavus NRRL3357</synonym>\r
2874                                               <rank>strain</rank>\r
2875                                               <uri>http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg</uri>\r
2876                                             </taxonomy>\r
2877                                           </clade>\r
2878                                           <clade>\r
2879                                             <taxonomy>\r
2880                                               <id provider="uniprot">425011</id>\r
2881                                               <code>ASPNC</code>\r
2882                                               <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>\r
2883                                               <synonym>Aspergillus niger CBS 513.88</synonym>\r
2884                                               <rank>strain</rank>\r
2885                                               <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>\r
2886                                             </taxonomy>\r
2887                                           </clade>\r
2888                                           <clade>\r
2889                                             <taxonomy>\r
2890                                               <id provider="uniprot">344612</id>\r
2891                                               <code>ASPCL</code>\r
2892                                               <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>\r
2893                                               <synonym>Aspergillus clavatus NRRL 1</synonym>\r
2894                                             </taxonomy>\r
2895                                           </clade>\r
2896                                         </clade>\r
2897                                         <clade>\r
2898                                           <name>Neosartorya &amp; Emericella</name>\r
2899                                           <clade>\r
2900                                             <taxonomy>\r
2901                                               <id provider="uniprot">227321</id>\r
2902                                               <code>EMENI</code>\r
2903                                               <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>\r
2904                                               <authority>Vuill. 1927</authority>\r
2905                                               <synonym>Aspergillus nidulans</synonym>\r
2906                                               <rank>strain</rank>\r
2907                                             </taxonomy>\r
2908                                           </clade>\r
2909                                           <clade>\r
2910                                             <taxonomy>\r
2911                                               <id provider="uniprot">331117</id>\r
2912                                               <code>NEOFI</code>\r
2913                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
2914                                               <synonym>Aspergillus fischerianus</synonym>\r
2915                                               <rank>strain</rank>\r
2916                                             </taxonomy>\r
2917                                           </clade>\r
2918                                         </clade>\r
2919                                       </clade>\r
2920                                     </clade>\r
2921                                     <clade>\r
2922                                       <taxonomy>\r
2923                                         <id provider="uniprot">33183</id>\r
2924                                         <scientific_name>Onygenales</scientific_name>\r
2925                                         <rank>order</rank>\r
2926                                       </taxonomy>\r
2927                                       <reference>\r
2928                                         <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>\r
2929                                       </reference>\r
2930                                       <reference>\r
2931                                       </reference>\r
2932                                       <clade>\r
2933                                         <name>mitosporic Onygenales &amp; Onygenaceae</name>\r
2934                                         <clade>\r
2935                                           <taxonomy>\r
2936                                             <id provider="uniprot">246410</id>\r
2937                                             <code>COCIM</code>\r
2938                                             <scientific_name>Coccidioides immitis (strain RS)</scientific_name>\r
2939                                             <common_name>Valley fever fungus</common_name>\r
2940                                             <synonym>Coccidioides immitis RS</synonym>\r
2941                                           </taxonomy>\r
2942                                         </clade>\r
2943                                         <clade>\r
2944                                           <taxonomy>\r
2945                                             <id provider="uniprot">336963</id>\r
2946                                             <code>UNCRE</code>\r
2947                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
2948                                             <rank>strain</rank>\r
2949                                           </taxonomy>\r
2950                                         </clade>\r
2951                                       </clade>\r
2952                                       <clade>\r
2953                                         <taxonomy>\r
2954                                           <id provider="uniprot">447093</id>\r
2955                                           <code>AJECG</code>\r
2956                                           <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>\r
2957                                           <common_name>Darling&apos;s disease fungus</common_name>\r
2958                                           <synonym>Histoplasma capsulatum</synonym>\r
2959                                         </taxonomy>\r
2960                                       </clade>\r
2961                                     </clade>\r
2962                                   </clade>\r
2963                                   <clade>\r
2964                                     <taxonomy>\r
2965                                       <id provider="uniprot">656061</id>\r
2966                                       <code>TUBMM</code>\r
2967                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
2968                                       <common_name>Perigord black truffle</common_name>\r
2969                                       <synonym>Tuber melanosporum Mel28</synonym>\r
2970                                       <rank>strain</rank>\r
2971                                       <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>\r
2972                                     </taxonomy>\r
2973                                   </clade>\r
2974                                 </clade>\r
2975                                 <clade>\r
2976                                   <taxonomy>\r
2977                                     <id provider="uniprot">4892</id>\r
2978                                     <scientific_name>Saccharomycetales</scientific_name>\r
2979                                     <common_name>budding yeasts</common_name>\r
2980                                     <rank>order</rank>\r
2981                                   </taxonomy>\r
2982                                   <reference doi="10.1186/1471-2148-6-99">\r
2983                                     <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>\r
2984                                   </reference>\r
2985                                   <reference>\r
2986                                   </reference>\r
2987                                   <clade>\r
2988                                     <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>\r
2989                                     <clade>\r
2990                                       <taxonomy>\r
2991                                         <id provider="uniprot">4893</id>\r
2992                                         <scientific_name>Saccharomycetaceae</scientific_name>\r
2993                                         <rank>family</rank>\r
2994                                       </taxonomy>\r
2995                                       <clade>\r
2996                                         <name>Naumovozyma &amp; Saccharomyces</name>\r
2997                                         <clade>\r
2998                                           <taxonomy>\r
2999                                             <id provider="uniprot">1064592</id>\r
3000                                             <code>NAUCC</code>\r
3001                                             <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>\r
3002                                             <common_name>Yeast</common_name>\r
3003                                             <synonym>Saccharomyces castellii</synonym>\r
3004                                             <rank>strain</rank>\r
3005                                           </taxonomy>\r
3006                                         </clade>\r
3007                                         <clade>\r
3008                                           <taxonomy>\r
3009                                             <id provider="uniprot">559292</id>\r
3010                                             <code>YEAST</code>\r
3011                                             <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>\r
3012                                             <common_name>Baker&apos;s yeast</common_name>\r
3013                                             <rank>strain</rank>\r
3014                                           </taxonomy>\r
3015                                         </clade>\r
3016                                       </clade>\r
3017                                       <clade>\r
3018                                         <name>Eremothecium &amp; Kluyveromyces</name>\r
3019                                         <clade>\r
3020                                           <taxonomy>\r
3021                                             <id provider="uniprot">284590</id>\r
3022                                             <code>KLULA</code>\r
3023                                             <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>\r
3024                                             <common_name>Yeast</common_name>\r
3025                                             <synonym>Candida sphaerica</synonym>\r
3026                                             <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>\r
3027                                           </taxonomy>\r
3028                                         </clade>\r
3029                                         <clade>\r
3030                                           <taxonomy>\r
3031                                             <id provider="uniprot">284811</id>\r
3032                                             <code>ASHGO</code>\r
3033                                             <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>\r
3034                                             <common_name>Yeast</common_name>\r
3035                                             <synonym>Eremothecium gossypii</synonym>\r
3036                                           </taxonomy>\r
3037                                         </clade>\r
3038                                       </clade>\r
3039                                     </clade>\r
3040                                     <clade>\r
3041                                       <name>Debaryomyces &amp; Candida</name>\r
3042                                       <clade>\r
3043                                         <taxonomy>\r
3044                                           <id provider="uniprot">5475</id>\r
3045                                           <scientific_name>Candida</scientific_name>\r
3046                                           <synonym>Torulopsis</synonym>\r
3047                                           <rank>genus</rank>\r
3048                                         </taxonomy>\r
3049                                         <clade>\r
3050                                           <taxonomy>\r
3051                                             <id provider="uniprot">237561</id>\r
3052                                             <code>CANAL</code>\r
3053                                             <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>\r
3054                                             <common_name>Yeast</common_name>\r
3055                                             <rank>strain</rank>\r
3056                                           </taxonomy>\r
3057                                         </clade>\r
3058                                         <clade>\r
3059                                           <taxonomy>\r
3060                                             <id provider="uniprot">294747</id>\r
3061                                             <code>CANTT</code>\r
3062                                             <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>\r
3063                                             <common_name>Yeast</common_name>\r
3064                                             <rank>strain</rank>\r
3065                                           </taxonomy>\r
3066                                         </clade>\r
3067                                       </clade>\r
3068                                       <clade>\r
3069                                         <taxonomy>\r
3070                                           <id provider="uniprot">284592</id>\r
3071                                           <code>DEBHA</code>\r
3072                                           <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>\r
3073                                           <common_name>Yeast</common_name>\r
3074                                           <synonym>Torulaspora hansenii</synonym>\r
3075                                           <synonym>Debaryomyces hansenii CBS767</synonym>\r
3076                                         </taxonomy>\r
3077                                       </clade>\r
3078                                     </clade>\r
3079                                   </clade>\r
3080                                   <clade>\r
3081                                     <taxonomy>\r
3082                                       <id provider="uniprot">284591</id>\r
3083                                       <code>YARLI</code>\r
3084                                       <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>\r
3085                                       <common_name>Yeast</common_name>\r
3086                                       <synonym>Candida lipolytica</synonym>\r
3087                                       <rank>strain</rank>\r
3088                                     </taxonomy>\r
3089                                   </clade>\r
3090                                 </clade>\r
3091                               </clade>\r
3092                               <clade>\r
3093                                 <taxonomy>\r
3094                                   <id provider="uniprot">451866</id>\r
3095                                   <scientific_name>Taphrinomycotina</scientific_name>\r
3096                                   <rank>subphylum</rank>\r
3097                                 </taxonomy>\r
3098                                 <clade>\r
3099                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
3100                                   <clade>\r
3101                                     <taxonomy>\r
3102                                       <id provider="uniprot">4895</id>\r
3103                                       <scientific_name>Schizosaccharomyces</scientific_name>\r
3104                                       <rank>genus</rank>\r
3105                                     </taxonomy>\r
3106                                     <clade>\r
3107                                       <taxonomy>\r
3108                                         <id provider="uniprot">402676</id>\r
3109                                         <code>SCHJY</code>\r
3110                                         <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>\r
3111                                         <common_name>Fission yeast</common_name>\r
3112                                         <rank>strain</rank>\r
3113                                       </taxonomy>\r
3114                                     </clade>\r
3115                                     <clade>\r
3116                                       <taxonomy>\r
3117                                         <id provider="uniprot">4899</id>\r
3118                                         <code>SCHOT</code>\r
3119                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>\r
3120                                         <common_name>Fission yeast</common_name>\r
3121                                         <rank>species</rank>\r
3122                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>\r
3123                                       </taxonomy>\r
3124                                     </clade>\r
3125                                     <clade>\r
3126                                       <taxonomy>\r
3127                                         <id provider="uniprot">284812</id>\r
3128                                         <code>SCHPO</code>\r
3129                                         <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>\r
3130                                         <common_name>Fission yeast</common_name>\r
3131                                         <rank>strain</rank>\r
3132                                       </taxonomy>\r
3133                                     </clade>\r
3134                                   </clade>\r
3135                                   <clade>\r
3136                                     <taxonomy>\r
3137                                       <id provider="uniprot">4754</id>\r
3138                                       <code>PNECA</code>\r
3139                                       <scientific_name>Pneumocystis carinii</scientific_name>\r
3140                                       <rank>species</rank>\r
3141                                     </taxonomy>\r
3142                                   </clade>\r
3143                                 </clade>\r
3144                                 <clade>\r
3145                                   <taxonomy>\r
3146                                     <id provider="uniprot">5606</id>\r
3147                                     <scientific_name>Saitoella complicata</scientific_name>\r
3148                                     <rank>species</rank>\r
3149                                   </taxonomy>\r
3150                                 </clade>\r
3151                               </clade>\r
3152                             </clade>\r
3153                             <clade>\r
3154                               <taxonomy>\r
3155                                 <id provider="uniprot">5204</id>\r
3156                                 <scientific_name>Basidiomycota</scientific_name>\r
3157                                 <rank>phylum</rank>\r
3158                               </taxonomy>\r
3159                               <clade>\r
3160                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
3161                                 <clade>\r
3162                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
3163                                   <clade>\r
3164                                     <taxonomy>\r
3165                                       <id provider="uniprot">5302</id>\r
3166                                       <scientific_name>Agaricomycotina</scientific_name>\r
3167                                     </taxonomy>\r
3168                                     <clade>\r
3169                                       <taxonomy>\r
3170                                         <id provider="uniprot">155619</id>\r
3171                                         <scientific_name>Homobasidiomycetes</scientific_name>\r
3172                                         <rank>class</rank>\r
3173                                       </taxonomy>\r
3174                                       <reference doi="10.1098/rspb.2002.2123">\r
3175                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
3176                                       </reference>\r
3177                                       <clade>\r
3178                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
3179                                         <clade>\r
3180                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
3181                                           <clade>\r
3182                                             <taxonomy>\r
3183                                               <id provider="uniprot">452333</id>\r
3184                                               <scientific_name>Agaricomycetidae</scientific_name>\r
3185                                               <rank>subclass</rank>\r
3186                                             </taxonomy>\r
3187                                             <clade>\r
3188                                               <name>Agaricales &amp; Boletales</name>\r
3189                                               <clade>\r
3190                                                 <taxonomy>\r
3191                                                   <id provider="uniprot">5338</id>\r
3192                                                   <scientific_name>Agaricales</scientific_name>\r
3193                                                   <rank>order</rank>\r
3194                                                 </taxonomy>\r
3195                                                 <clade>\r
3196                                                   <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
3197                                                   <clade>\r
3198                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
3199                                                     <clade>\r
3200                                                       <name>Agaricus &amp; Coprinopsis</name>\r
3201                                                       <clade>\r
3202                                                         <taxonomy>\r
3203                                                           <id provider="uniprot">597362</id>\r
3204                                                           <code>AGABU</code>\r
3205                                                           <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>\r
3206                                                           <common_name>White button mushroom</common_name>\r
3207                                                           <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>\r
3208                                                           <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
3209                                                         </taxonomy>\r
3210                                                       </clade>\r
3211                                                       <clade>\r
3212                                                         <taxonomy>\r
3213                                                           <id provider="uniprot">5346</id>\r
3214                                                           <code>COPC7</code>\r
3215                                                           <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>\r
3216                                                           <common_name>Inky cap fungus</common_name>\r
3217                                                           <synonym>Hormographiella aspergillata</synonym>\r
3218                                                           <rank>strain</rank>\r
3219                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>\r
3220                                                         </taxonomy>\r
3221                                                       </clade>\r
3222                                                     </clade>\r
3223                                                     <clade>\r
3224                                                       <taxonomy>\r
3225                                                         <id provider="uniprot">486041</id>\r
3226                                                         <code>LACBS</code>\r
3227                                                         <scientific_name>Laccaria bicolor</scientific_name>\r
3228                                                         <common_name>Bicoloured deceiver</common_name>\r
3229                                                         <synonym>Laccaria laccata var. bicolor</synonym>\r
3230                                                         <synonym>Laccaria bicolor S238N-H82</synonym>\r
3231                                                         <rank>strain</rank>\r
3232                                                         <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>\r
3233                                                       </taxonomy>\r
3234                                                     </clade>\r
3235                                                   </clade>\r
3236                                                   <clade>\r
3237                                                     <taxonomy>\r
3238                                                       <id provider="uniprot">206324</id>\r
3239                                                       <scientific_name>Gymnopus luxurians</scientific_name>\r
3240                                                       <rank>species</rank>\r
3241                                                       <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
3242                                                     </taxonomy>\r
3243                                                   </clade>\r
3244                                                 </clade>\r
3245                                                 <clade>\r
3246                                                   <taxonomy>\r
3247                                                     <id provider="uniprot">5322</id>\r
3248                                                     <code>PLEOS</code>\r
3249                                                     <scientific_name>Pleurotus ostreatus</scientific_name>\r
3250                                                     <common_name>Oyster mushroom</common_name>\r
3251                                                     <synonym>White-rot fungus</synonym>\r
3252                                                     <rank>species</rank>\r
3253                                                     <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
3254                                                   </taxonomy>\r
3255                                                 </clade>\r
3256                                               </clade>\r
3257                                               <clade>\r
3258                                                 <taxonomy>\r
3259                                                   <id provider="uniprot">68889</id>\r
3260                                                   <scientific_name>Boletales</scientific_name>\r
3261                                                   <synonym>Melanogastrales</synonym>\r
3262                                                   <synonym>Sclerodermatales</synonym>\r
3263                                                   <rank>order</rank>\r
3264                                                 </taxonomy>\r
3265                                                 <clade>\r
3266                                                   <taxonomy>\r
3267                                                     <id provider="uniprot">227334</id>\r
3268                                                     <scientific_name>Coniophorineae</scientific_name>\r
3269                                                     <rank>suborder</rank>\r
3270                                                   </taxonomy>\r
3271                                                   <clade>\r
3272                                                     <taxonomy>\r
3273                                                       <id provider="uniprot">80637</id>\r
3274                                                       <code>CPUXX</code>\r
3275                                                       <scientific_name>Coniophora puteana</scientific_name>\r
3276                                                       <authority>Schum. ex Fries</authority>\r
3277                                                       <common_name>cellar fungus</common_name>\r
3278                                                       <rank>species</rank>\r
3279                                                       <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
3280                                                     </taxonomy>\r
3281                                                   </clade>\r
3282                                                   <clade>\r
3283                                                     <taxonomy>\r
3284                                                       <id provider="uniprot">578457</id>\r
3285                                                       <code>SERL9</code>\r
3286                                                       <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>\r
3287                                                       <common_name>Dry rot fungus</common_name>\r
3288                                                       <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>\r
3289                                                     </taxonomy>\r
3290                                                   </clade>\r
3291                                                 </clade>\r
3292                                                 <clade>\r
3293                                                   <taxonomy>\r
3294                                                     <id provider="uniprot">388859</id>\r
3295                                                     <scientific_name>Hydnomerulius pinastri</scientific_name>\r
3296                                                     <common_name>Spiny dry rot fungus</common_name>\r
3297                                                     <rank>species</rank>\r
3298                                                     <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>\r
3299                                                   </taxonomy>\r
3300                                                 </clade>\r
3301                                               </clade>\r
3302                                             </clade>\r
3303                                             <clade>\r
3304                                               <taxonomy>\r
3305                                                 <id provider="uniprot">202697</id>\r
3306                                                 <code>JARXX</code>\r
3307                                                 <scientific_name>Jaapia argillacea</scientific_name>\r
3308                                                 <rank>species</rank>\r
3309                                                 <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>\r
3310                                               </taxonomy>\r
3311                                             </clade>\r
3312                                           </clade>\r
3313                                           <clade>\r
3314                                             <taxonomy>\r
3315                                               <id provider="uniprot">104355</id>\r
3316                                               <code>GLOTR</code>\r
3317                                               <scientific_name>Gloeophyllum trabeum</scientific_name>\r
3318                                               <common_name>Brown rot fungus</common_name>\r
3319                                               <rank>species</rank>\r
3320                                               <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>\r
3321                                             </taxonomy>\r
3322                                           </clade>\r
3323                                         </clade>\r
3324                                         <clade>\r
3325                                           <taxonomy>\r
3326                                             <id provider="uniprot">5303</id>\r
3327                                             <scientific_name>Aphyllophorales</scientific_name>\r
3328                                             <authority>Gäum. (1926)</authority>\r
3329                                             <common_name>Shelf Fungi</common_name>\r
3330                                             <synonym>Polyporales</synonym>\r
3331                                             <rank>order</rank>\r
3332                                           </taxonomy>\r
3333                                           <clade>\r
3334                                             <taxonomy>\r
3335                                               <id provider="uniprot">83233</id>\r
3336                                               <scientific_name>Coriolaceae</scientific_name>\r
3337                                               <rank>family</rank>\r
3338                                             </taxonomy>\r
3339                                             <reference doi="10.1017/S1477200005001623">\r
3340                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
3341                                             </reference>\r
3342                                             <reference>\r
3343                                             </reference>\r
3344                                             <reference>\r
3345                                             </reference>\r
3346                                             <clade>\r
3347                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
3348                                               <clade>\r
3349                                                 <name>Antrodia clade</name>\r
3350                                                 <taxonomy>\r
3351                                                   <common_name>Antrodia clade</common_name>\r
3352                                                 </taxonomy>\r
3353                                                 <clade>\r
3354                                                   <taxonomy>\r
3355                                                     <id provider="uniprot">40483</id>\r
3356                                                     <code>FPIXX</code>\r
3357                                                     <scientific_name>Fomitopsis pinicola</scientific_name>\r
3358                                                     <authority>(Swartz) P. Karsten</authority>\r
3359                                                     <common_name>Red banded polypore</common_name>\r
3360                                                     <synonym>Fomes pinicola</synonym>\r
3361                                                     <synonym>Boletus pinicola</synonym>\r
3362                                                     <rank>species</rank>\r
3363                                                     <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>\r
3364                                                   </taxonomy>\r
3365                                                 </clade>\r
3366                                                 <clade>\r
3367                                                   <taxonomy>\r
3368                                                     <id provider="uniprot">104341</id>\r
3369                                                     <code>PPLXX</code>\r
3370                                                     <scientific_name>Postia placenta</scientific_name>\r
3371                                                     <synonym>Rhodonia placenta</synonym>\r
3372                                                     <rank>species</rank>\r
3373                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
3374                                                   </taxonomy>\r
3375                                                 </clade>\r
3376                                               </clade>\r
3377                                               <clade>\r
3378                                                 <name>core polyporoid clade</name>\r
3379                                                 <taxonomy>\r
3380                                                   <common_name>core polyporoid clade</common_name>\r
3381                                                 </taxonomy>\r
3382                                                 <clade>\r
3383                                                   <taxonomy>\r
3384                                                     <id provider="uniprot">5325</id>\r
3385                                                     <code>TRAVE</code>\r
3386                                                     <scientific_name>Trametes versicolor</scientific_name>\r
3387                                                     <authority>(L.) Lloyd 1921</authority>\r
3388                                                     <common_name>White-rot fungus</common_name>\r
3389                                                     <synonym>Coriolus versicolor</synonym>\r
3390                                                     <synonym>Bjerkandera versicolor</synonym>\r
3391                                                     <rank>species</rank>\r
3392                                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg</uri>\r
3393                                                   </taxonomy>\r
3394                                                 </clade>\r
3395                                                 <clade>\r
3396                                                   <taxonomy>\r
3397                                                     <id provider="uniprot">742152</id>\r
3398                                                     <code>WOLCO</code>\r
3399                                                     <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>\r
3400                                                     <common_name>Brown rot fungus</common_name>\r
3401                                                     <synonym>Wolfiporia cocos MD-104 SS10</synonym>\r
3402                                                     <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>\r
3403                                                   </taxonomy>\r
3404                                                 </clade>\r
3405                                               </clade>\r
3406                                             </clade>\r
3407                                             <clade>\r
3408                                               <taxonomy>\r
3409                                                 <id provider="uniprot">42742</id>\r
3410                                                 <code>CERSU</code>\r
3411                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
3412                                                 <rank>species</rank>\r
3413                                               </taxonomy>\r
3414                                             </clade>\r
3415                                           </clade>\r
3416                                           <clade>\r
3417                                             <taxonomy>\r
3418                                               <id provider="uniprot">732165</id>\r
3419                                               <code>DICSQ</code>\r
3420                                               <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>\r
3421                                               <common_name>Western red white-rot fungus</common_name>\r
3422                                               <synonym>Dichomitus squalens LYAD-421 SS1</synonym>\r
3423                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
3424                                             </taxonomy>\r
3425                                           </clade>\r
3426                                         </clade>\r
3427                                       </clade>\r
3428                                       <clade>\r
3429                                         <taxonomy>\r
3430                                           <id provider="uniprot">13563</id>\r
3431                                           <code>HETAN</code>\r
3432                                           <scientific_name>Heterobasidion annosum</scientific_name>\r
3433                                           <common_name>Root rot fungus</common_name>\r
3434                                           <rank>species</rank>\r
3435                                         </taxonomy>\r
3436                                       </clade>\r
3437                                     </clade>\r
3438                                     <clade>\r
3439                                       <taxonomy>\r
3440                                         <id provider="uniprot">5215</id>\r
3441                                         <scientific_name>Tremellaceae</scientific_name>\r
3442                                         <rank>family</rank>\r
3443                                       </taxonomy>\r
3444                                       <clade>\r
3445                                         <taxonomy>\r
3446                                           <id provider="uniprot">5207</id>\r
3447                                           <code>CRYNE</code>\r
3448                                           <scientific_name>Cryptococcus neoformans</scientific_name>\r
3449                                           <synonym>Filobasidiella neoformans</synonym>\r
3450                                           <rank>species</rank>\r
3451                                         </taxonomy>\r
3452                                       </clade>\r
3453                                       <clade>\r
3454                                         <taxonomy>\r
3455                                           <id provider="eol">1029985</id>\r
3456                                           <code>TREME</code>\r
3457                                           <scientific_name>Tremella mesenterica</scientific_name>\r
3458                                           <authority>Pers. 1800</authority>\r
3459                                           <common_name>Jelly fungus</common_name>\r
3460                                           <synonym>Yellow Brain</synonym>\r
3461                                           <synonym>Tremella lutescens</synonym>\r
3462                                           <rank>species</rank>\r
3463                                         </taxonomy>\r
3464                                       </clade>\r
3465                                     </clade>\r
3466                                   </clade>\r
3467                                   <clade>\r
3468                                     <taxonomy>\r
3469                                       <id provider="uniprot">452284</id>\r
3470                                       <scientific_name>Ustilaginomycotina</scientific_name>\r
3471                                       <rank>subphylum</rank>\r
3472                                     </taxonomy>\r
3473                                     <clade>\r
3474                                       <taxonomy>\r
3475                                         <id provider="uniprot">425265</id>\r
3476                                         <code>MALGO</code>\r
3477                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
3478                                         <common_name>Dandruff-associated fungus</common_name>\r
3479                                       </taxonomy>\r
3480                                     </clade>\r
3481                                     <clade>\r
3482                                       <taxonomy>\r
3483                                         <id provider="uniprot">237631</id>\r
3484                                         <code>USTMA</code>\r
3485                                         <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>\r
3486                                         <common_name>Corn smut fungus</common_name>\r
3487                                         <rank>species</rank>\r
3488                                       </taxonomy>\r
3489                                     </clade>\r
3490                                   </clade>\r
3491                                 </clade>\r
3492                                 <clade>\r
3493                                   <taxonomy>\r
3494                                     <id provider="uniprot">29000</id>\r
3495                                     <scientific_name>Pucciniomycotina</scientific_name>\r
3496                                     <rank>subphylum</rank>\r
3497                                   </taxonomy>\r
3498                                   <clade>\r
3499                                     <taxonomy>\r
3500                                       <id provider="uniprot">5258</id>\r
3501                                       <scientific_name>Pucciniales</scientific_name>\r
3502                                       <common_name>rusts</common_name>\r
3503                                       <rank>order</rank>\r
3504                                     </taxonomy>\r
3505                                     <clade>\r
3506                                       <taxonomy>\r
3507                                         <id provider="uniprot">747676</id>\r
3508                                         <code>MELLP</code>\r
3509                                         <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>\r
3510                                         <authority>Kleb. 1902</authority>\r
3511                                         <common_name>Poplar leaf rust fungus</common_name>\r
3512                                         <synonym>Melampsora larici-populina 98AG31</synonym>\r
3513                                         <synonym>Melampsora laricis-populina 98AG31</synonym>\r
3514                                         <rank>strain</rank>\r
3515                                       </taxonomy>\r
3516                                     </clade>\r
3517                                     <clade>\r
3518                                       <taxonomy>\r
3519                                         <id provider="uniprot">5297</id>\r
3520                                         <code>PUCGR</code>\r
3521                                         <scientific_name>Puccinia graminis</scientific_name>\r
3522                                         <authority>Pers. 1794</authority>\r
3523                                         <common_name>Black stem rust fungus</common_name>\r
3524                                         <rank>species</rank>\r
3525                                       </taxonomy>\r
3526                                     </clade>\r
3527                                   </clade>\r
3528                                   <clade>\r
3529                                     <taxonomy>\r
3530                                       <id provider="uniprot">89013</id>\r
3531                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
3532                                     </taxonomy>\r
3533                                     <clade>\r
3534                                       <taxonomy>\r
3535                                         <id provider="uniprot">29898</id>\r
3536                                         <code>RHOGR</code>\r
3537                                         <scientific_name>Rhodotorula graminis</scientific_name>\r
3538                                         <common_name>Yeast</common_name>\r
3539                                         <rank>species</rank>\r
3540                                       </taxonomy>\r
3541                                     </clade>\r
3542                                     <clade>\r
3543                                       <taxonomy>\r
3544                                         <id provider="uniprot">40563</id>\r
3545                                         <code>SPORO</code>\r
3546                                         <scientific_name>Sporobolomyces roseus</scientific_name>\r
3547                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
3548                                         <rank>species</rank>\r
3549                                       </taxonomy>\r
3550                                     </clade>\r
3551                                   </clade>\r
3552                                 </clade>\r
3553                               </clade>\r
3554                               <clade>\r
3555                                 <taxonomy>\r
3556                                   <id provider="uniprot">671144</id>\r
3557                                   <code>WALSC</code>\r
3558                                   <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>\r
3559                                   <rank>strain</rank>\r
3560                                 </taxonomy>\r
3561                               </clade>\r
3562                             </clade>\r
3563                           </clade>\r
3564                           <clade>\r
3565                             <taxonomy>\r
3566                               <id provider="uniprot">451507</id>\r
3567                               <scientific_name>Mucoromycotina</scientific_name>\r
3568                               <rank>subphylum</rank>\r
3569                             </taxonomy>\r
3570                             <clade>\r
3571                               <taxonomy>\r
3572                                 <id provider="uniprot">34489</id>\r
3573                                 <scientific_name>Mucoraceae</scientific_name>\r
3574                                 <rank>family</rank>\r
3575                               </taxonomy>\r
3576                               <clade>\r
3577                                 <taxonomy>\r
3578                                   <id provider="uniprot">36080</id>\r
3579                                   <code>MUCCI</code>\r
3580                                   <scientific_name>Mucor circinelloides</scientific_name>\r
3581                                   <synonym>Mucor griseo-roseus</synonym>\r
3582                                   <rank>species</rank>\r
3583                                 </taxonomy>\r
3584                               </clade>\r
3585                               <clade>\r
3586                                 <taxonomy>\r
3587                                   <id provider="uniprot">4837</id>\r
3588                                   <code>PHYBL</code>\r
3589                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>\r
3590                                   <rank>species</rank>\r
3591                                 </taxonomy>\r
3592                               </clade>\r
3593                               <clade>\r
3594                                 <taxonomy>\r
3595                                   <id provider="uniprot">64495</id>\r
3596                                   <code>RHIOR</code>\r
3597                                   <scientific_name>Rhizopus oryzae</scientific_name>\r
3598                                   <common_name>Mucormycosis agent</common_name>\r
3599                                   <synonym>Rhizopus delemar</synonym>\r
3600                                   <synonym>Rhizopus arrhizus var. delemar</synonym>\r
3601                                   <rank>species</rank>\r
3602                                 </taxonomy>\r
3603                               </clade>\r
3604                             </clade>\r
3605                             <clade>\r
3606                               <taxonomy>\r
3607                                 <id provider="uniprot">1069443</id>\r
3608                                 <code>MVNXX</code>\r
3609                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>\r
3610                                 <rank>species</rank>\r
3611                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>\r
3612                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
3613                               </taxonomy>\r
3614                             </clade>\r
3615                           </clade>\r
3616                         </clade>\r
3617                         <clade>\r
3618                           <taxonomy>\r
3619                             <id provider="uniprot">61392</id>\r
3620                             <code>CREXX</code>\r
3621                             <scientific_name>Coemansia reversa</scientific_name>\r
3622                             <rank>species</rank>\r
3623                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>\r
3624                           </taxonomy>\r
3625                         </clade>\r
3626                       </clade>\r
3627                       <clade>\r
3628                         <taxonomy>\r
3629                           <id provider="uniprot">28583</id>\r
3630                           <code>ALLMA</code>\r
3631                           <scientific_name>Allomyces macrogynus</scientific_name>\r
3632                           <rank>species</rank>\r
3633                         </taxonomy>\r
3634                       </clade>\r
3635                     </clade>\r
3636                     <clade>\r
3637                       <taxonomy>\r
3638                         <id provider="uniprot">4761</id>\r
3639                         <scientific_name>Chytridiomycota</scientific_name>\r
3640                         <common_name>chytrids</common_name>\r
3641                         <synonym>Mastigomycotina</synonym>\r
3642                         <rank>phylum</rank>\r
3643                       </taxonomy>\r
3644                       <clade>\r
3645                         <taxonomy>\r
3646                           <id provider="uniprot">451435</id>\r
3647                           <scientific_name>Chytridiomycetes</scientific_name>\r
3648                           <rank>class</rank>\r
3649                         </taxonomy>\r
3650                         <clade>\r
3651                           <taxonomy>\r
3652                             <id provider="uniprot">684364</id>\r
3653                             <code>BATDJ</code>\r
3654                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>\r
3655                             <common_name>Frog chytrid fungus</common_name>\r
3656                             <rank>strain</rank>\r
3657                           </taxonomy>\r
3658                         </clade>\r
3659                         <clade>\r
3660                           <taxonomy>\r
3661                             <id provider="uniprot">109760</id>\r
3662                             <code>SPIPN</code>\r
3663                             <scientific_name>Spizellomyces punctatus</scientific_name>\r
3664                             <rank>species</rank>\r
3665                           </taxonomy>\r
3666                         </clade>\r
3667                       </clade>\r
3668                       <clade>\r
3669                         <taxonomy>\r
3670                           <id provider="uniprot">1123529</id>\r
3671                           <code>GONPR</code>\r
3672                           <scientific_name>Gonapodya prolifera</scientific_name>\r
3673                           <authority>A. Fisch. 1892</authority>\r
3674                           <common_name>Aquatic fungus</common_name>\r
3675                           <rank>species</rank>\r
3676                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
3677                         </taxonomy>\r
3678                       </clade>\r
3679                     </clade>\r
3680                   </clade>\r
3681                   <clade>\r
3682                     <taxonomy>\r
3683                       <id provider="uniprot">73868</id>\r
3684                       <code>PIRSE</code>\r
3685                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>\r
3686                       <rank>species</rank>\r
3687                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
3688                     </taxonomy>\r
3689                   </clade>\r
3690                 </clade>\r
3691                 <clade>\r
3692                   <taxonomy>\r
3693                     <id provider="uniprot">6029</id>\r
3694                     <scientific_name>Microsporidia</scientific_name>\r
3695                     <rank>phylum</rank>\r
3696                   </taxonomy>\r
3697                   <reference>\r
3698                     <desc>Disseminated Infection Caused by Novel Species of Microsporidium, Thailand</desc>\r
3699                   </reference>\r
3700                   <clade>\r
3701                     <taxonomy>\r
3702                       <id provider="uniprot">6032</id>\r
3703                       <scientific_name>Apansporoblastina</scientific_name>\r
3704                       <rank>suborder</rank>\r
3705                     </taxonomy>\r
3706                     <clade>\r
3707                       <taxonomy>\r
3708                         <id provider="uniprot">6033</id>\r
3709                         <scientific_name>Encephalitozoon</scientific_name>\r
3710                         <rank>genus</rank>\r
3711                       </taxonomy>\r
3712                       <clade>\r
3713                         <taxonomy>\r
3714                           <id provider="uniprot">284813</id>\r
3715                           <code>ENCCU</code>\r
3716                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>\r
3717                           <common_name>Microsporidian parasite</common_name>\r
3718                           <rank>strain</rank>\r
3719                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>\r
3720                         </taxonomy>\r
3721                       </clade>\r
3722                       <clade>\r
3723                         <taxonomy>\r
3724                           <id provider="uniprot">907965</id>\r
3725                           <code>ENCHA</code>\r
3726                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>\r
3727                           <common_name>Microsporidian parasite</common_name>\r
3728                           <rank>strain</rank>\r
3729                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>\r
3730                         </taxonomy>\r
3731                       </clade>\r
3732                     </clade>\r
3733                     <clade>\r
3734                       <name>Nosematidae &amp; Enterocytozoonidae</name>\r
3735                       <clade>\r
3736                         <taxonomy>\r
3737                           <id provider="uniprot">993615</id>\r
3738                           <code>VITCO</code>\r
3739                           <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>\r
3740                           <common_name>Microsporidian parasite</common_name>\r
3741                           <synonym>Nosema corneum</synonym>\r
3742                         </taxonomy>\r
3743                       </clade>\r
3744                       <clade>\r
3745                         <taxonomy>\r
3746                           <id provider="uniprot">481877</id>\r
3747                           <code>ENTBH</code>\r
3748                           <scientific_name>Enterocytozoon bieneusi (strain H348)</scientific_name>\r
3749                           <common_name>Microsporidian parasite</common_name>\r
3750                           <uri>http://www.biolib.cz/IMG/GAL/17310.jpg</uri>\r
3751                         </taxonomy>\r
3752                       </clade>\r
3753                     </clade>\r
3754                   </clade>\r
3755                   <clade>\r
3756                     <taxonomy>\r
3757                       <id provider="uniprot">72359</id>\r
3758                       <code>TRAHO</code>\r
3759                       <scientific_name>Trachipleistophora hominis</scientific_name>\r
3760                       <common_name>Microsporidian parasite</common_name>\r
3761                       <rank>species</rank>\r
3762                     </taxonomy>\r
3763                   </clade>\r
3764                   <clade>\r
3765                     <taxonomy>\r
3766                       <id provider="uniprot">1003232</id>\r
3767                       <code>EDHAE</code>\r
3768                       <scientific_name>Edhazardia aedis (strain USNM 41457)</scientific_name>\r
3769                       <common_name>Microsporidian parasite</common_name>\r
3770                       <uri>http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg</uri>\r
3771                     </taxonomy>\r
3772                   </clade>\r
3773                 </clade>\r
3774               </clade>\r
3775               <clade>\r
3776                 <name>Fonticula &amp; Nucleariidae</name>\r
3777                 <reference doi="10.1093/molbev/msp185">\r
3778                 </reference>\r
3779                 <clade>\r
3780                   <taxonomy>\r
3781                     <id provider="uniprot">691883</id>\r
3782                     <scientific_name>Fonticula alba</scientific_name>\r
3783                     <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>\r
3784                     <rank>species</rank>\r
3785                   </taxonomy>\r
3786                 </clade>\r
3787                 <clade>\r
3788                   <taxonomy>\r
3789                     <id provider="uniprot">154970</id>\r
3790                     <scientific_name>Nuclearia simplex</scientific_name>\r
3791                     <rank>species</rank>\r
3792                   </taxonomy>\r
3793                 </clade>\r
3794               </clade>\r
3795             </clade>\r
3796           </clade>\r
3797           <clade>\r
3798             <taxonomy>\r
3799               <id provider="uniprot">554915</id>\r
3800               <scientific_name>Amoebozoa</scientific_name>\r
3801             </taxonomy>\r
3802             <clade>\r
3803               <taxonomy>\r
3804                 <id provider="uniprot">33083</id>\r
3805                 <scientific_name>Dictyosteliida</scientific_name>\r
3806                 <common_name>dictyostelid cellular slime molds</common_name>\r
3807                 <rank>order</rank>\r
3808               </taxonomy>\r
3809               <clade>\r
3810                 <taxonomy>\r
3811                   <id provider="uniprot">5782</id>\r
3812                   <scientific_name>Dictyostelium</scientific_name>\r
3813                   <rank>genus</rank>\r
3814                 </taxonomy>\r
3815                 <reference doi="10.1186/1471-2148-11-84">\r
3816                   <desc>An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns</desc>\r
3817                 </reference>\r
3818                 <reference>\r
3819                 </reference>\r
3820                 <reference>\r
3821                 </reference>\r
3822                 <clade>\r
3823                   <name>group 4</name>\r
3824                   <clade>\r
3825                     <taxonomy>\r
3826                       <id provider="uniprot">44689</id>\r
3827                       <code>DICDI</code>\r
3828                       <scientific_name>Dictyostelium discoideum</scientific_name>\r
3829                       <common_name>Slime mold</common_name>\r
3830                       <rank>species</rank>\r
3831                       <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>\r
3832                     </taxonomy>\r
3833                   </clade>\r
3834                   <clade>\r
3835                     <taxonomy>\r
3836                       <id provider="uniprot">5786</id>\r
3837                       <code>DICPU</code>\r
3838                       <scientific_name>Dictyostelium purpureum</scientific_name>\r
3839                       <common_name>Slime mold</common_name>\r
3840                       <rank>species</rank>\r
3841                     </taxonomy>\r
3842                   </clade>\r
3843                 </clade>\r
3844                 <clade>\r
3845                   <taxonomy>\r
3846                     <id provider="uniprot">1054147</id>\r
3847                     <code>DICFS</code>\r
3848                     <scientific_name>Dictyostelium fasciculatum (strain SH3)</scientific_name>\r
3849                     <common_name>Slime mold</common_name>\r
3850                     <rank>strain</rank>\r
3851                   </taxonomy>\r
3852                 </clade>\r
3853               </clade>\r
3854               <clade>\r
3855                 <taxonomy>\r
3856                   <id provider="uniprot">13642</id>\r
3857                   <code>POLPA</code>\r
3858                   <scientific_name>Polysphondylium pallidum</scientific_name>\r
3859                   <common_name>Cellular slime mold</common_name>\r
3860                   <rank>species</rank>\r
3861                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>\r
3862                 </taxonomy>\r
3863               </clade>\r
3864             </clade>\r
3865             <clade>\r
3866               <taxonomy>\r
3867                 <id provider="uniprot">5758</id>\r
3868                 <scientific_name>Entamoeba</scientific_name>\r
3869                 <rank>genus</rank>\r
3870               </taxonomy>\r
3871               <clade>\r
3872                 <taxonomy>\r
3873                   <id provider="uniprot">5759</id>\r
3874                   <code>ENTHI</code>\r
3875                   <scientific_name>Entamoeba histolytica</scientific_name>\r
3876                   <rank>species</rank>\r
3877                   <uri>http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg</uri>\r
3878                 </taxonomy>\r
3879               </clade>\r
3880               <clade>\r
3881                 <taxonomy>\r
3882                   <id provider="uniprot">370354</id>\r
3883                   <code>ENTDS</code>\r
3884                   <scientific_name>Entamoeba dispar (strain ATCC PRA-260 / SAW760)</scientific_name>\r
3885                 </taxonomy>\r
3886               </clade>\r
3887             </clade>\r
3888           </clade>\r
3889         </clade>\r
3890         <clade>\r
3891           <name>Bikonta</name>\r
3892           <reference doi="10.1099/ijs.0.63216-0">\r
3893           </reference>\r
3894           <clade>\r
3895             <name>Plants+HC+SAR megagroup</name>\r
3896             <clade>\r
3897               <name>Plants+HC</name>\r
3898               <clade>\r
3899                 <name>Archaeplastida</name>\r
3900                 <clade>\r
3901                   <taxonomy>\r
3902                     <id provider="uniprot">33090</id>\r
3903                     <scientific_name>Viridiplantae</scientific_name>\r
3904                     <common_name>green plants</common_name>\r
3905                     <rank>kingdom</rank>\r
3906                   </taxonomy>\r
3907                   <clade>\r
3908                     <taxonomy>\r
3909                       <id provider="uniprot">3193</id>\r
3910                       <scientific_name>Embryophyta</scientific_name>\r
3911                     </taxonomy>\r
3912                     <clade>\r
3913                       <taxonomy>\r
3914                         <id provider="uniprot">58023</id>\r
3915                         <scientific_name>Tracheophyta</scientific_name>\r
3916                         <common_name>vascular plants</common_name>\r
3917                       </taxonomy>\r
3918                       <clade>\r
3919                         <taxonomy>\r
3920                           <id provider="uniprot">58024</id>\r
3921                           <scientific_name>Spermatophyta</scientific_name>\r
3922                           <common_name>seed plants</common_name>\r
3923                         </taxonomy>\r
3924                         <clade>\r
3925                           <taxonomy>\r
3926                             <id provider="uniprot">3398</id>\r
3927                             <scientific_name>Magnoliophyta</scientific_name>\r
3928                             <common_name>flowering plants</common_name>\r
3929                             <synonym>Angiospermae</synonym>\r
3930                           </taxonomy>\r
3931                           <clade>\r
3932                             <taxonomy>\r
3933                               <id provider="uniprot">71240</id>\r
3934                               <scientific_name>eudicotyledons</scientific_name>\r
3935                             </taxonomy>\r
3936                             <clade>\r
3937                               <taxonomy>\r
3938                                 <id provider="uniprot">91827</id>\r
3939                                 <scientific_name>core eudicotyledons</scientific_name>\r
3940                               </taxonomy>\r
3941                               <clade>\r
3942                                 <taxonomy>\r
3943                                   <id provider="uniprot">71275</id>\r
3944                                   <scientific_name>rosids</scientific_name>\r
3945                                   <rank>subclass</rank>\r
3946                                 </taxonomy>\r
3947                                 <clade>\r
3948                                   <name>fabids &amp; malvids</name>\r
3949                                   <clade>\r
3950                                     <taxonomy>\r
3951                                       <id provider="uniprot">91835</id>\r
3952                                       <scientific_name>fabids</scientific_name>\r
3953                                     </taxonomy>\r
3954                                     <clade>\r
3955                                       <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
3956                                       <clade>\r
3957                                         <name>Rosales &amp; Cucurbitales</name>\r
3958                                         <clade>\r
3959                                           <taxonomy>\r
3960                                             <id provider="uniprot">3745</id>\r
3961                                             <scientific_name>Rosaceae</scientific_name>\r
3962                                             <rank>family</rank>\r
3963                                           </taxonomy>\r
3964                                           <clade>\r
3965                                             <taxonomy>\r
3966                                               <id provider="uniprot">57918</id>\r
3967                                               <code>FRAVE</code>\r
3968                                               <scientific_name>Fragaria vesca</scientific_name>\r
3969                                               <common_name>Woodland strawberry</common_name>\r
3970                                               <synonym>Fragaria vesca L.</synonym>\r
3971                                               <synonym>European strawberry</synonym>\r
3972                                               <synonym>alpine strawberry</synonym>\r
3973                                               <rank>species</rank>\r
3974                                               <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>\r
3975                                               <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>\r
3976                                             </taxonomy>\r
3977                                           </clade>\r
3978                                           <clade>\r
3979                                             <taxonomy>\r
3980                                               <id provider="uniprot">3760</id>\r
3981                                               <code>PRUPE</code>\r
3982                                               <scientific_name>Prunus persica</scientific_name>\r
3983                                               <common_name>Peach</common_name>\r
3984                                               <synonym>Persica vulgaris</synonym>\r
3985                                               <synonym>Amygdalus persica</synonym>\r
3986                                               <rank>species</rank>\r
3987                                               <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
3988                                             </taxonomy>\r
3989                                           </clade>\r
3990                                         </clade>\r
3991                                         <clade>\r
3992                                           <taxonomy>\r
3993                                             <id provider="uniprot">3659</id>\r
3994                                             <code>CUCSA</code>\r
3995                                             <scientific_name>Cucumis sativus</scientific_name>\r
3996                                             <common_name>Cucumber</common_name>\r
3997                                             <rank>species</rank>\r
3998                                           </taxonomy>\r
3999                                         </clade>\r
4000                                       </clade>\r
4001                                       <clade>\r
4002                                         <taxonomy>\r
4003                                           <id provider="uniprot">3814</id>\r
4004                                           <scientific_name>Papilionoideae</scientific_name>\r
4005                                           <rank>subfamily</rank>\r
4006                                         </taxonomy>\r
4007                                         <clade>\r
4008                                           <taxonomy>\r
4009                                             <id provider="uniprot">3847</id>\r
4010                                             <code>SOYBN</code>\r
4011                                             <scientific_name>Glycine max</scientific_name>\r
4012                                             <authority>cv. Wye</authority>\r
4013                                             <common_name>Soybean</common_name>\r
4014                                             <synonym>Glycine hispida</synonym>\r
4015                                             <rank>species</rank>\r
4016                                           </taxonomy>\r
4017                                         </clade>\r
4018                                         <clade>\r
4019                                           <taxonomy>\r
4020                                             <id provider="uniprot">3880</id>\r
4021                                             <code>MEDTR</code>\r
4022                                             <scientific_name>Medicago truncatula</scientific_name>\r
4023                                             <common_name>Barrel medic</common_name>\r
4024                                             <synonym>Medicago tribuloides</synonym>\r
4025                                             <rank>species</rank>\r
4026                                             <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
4027                                           </taxonomy>\r
4028                                         </clade>\r
4029                                       </clade>\r
4030                                     </clade>\r
4031                                     <clade>\r
4032                                       <taxonomy>\r
4033                                         <id provider="uniprot">3646</id>\r
4034                                         <scientific_name>Malpighiales</scientific_name>\r
4035                                         <rank>order</rank>\r
4036                                       </taxonomy>\r
4037                                       <clade>\r
4038                                         <taxonomy>\r
4039                                           <id provider="uniprot">3977</id>\r
4040                                           <scientific_name>Euphorbiaceae</scientific_name>\r
4041                                           <rank>family</rank>\r
4042                                         </taxonomy>\r
4043                                         <clade>\r
4044                                           <taxonomy>\r
4045                                             <id provider="uniprot">3983</id>\r
4046                                             <code>MANES</code>\r
4047                                             <scientific_name>Manihot esculenta</scientific_name>\r
4048                                             <common_name>Tapioca</common_name>\r
4049                                             <synonym>Jatropha manihot</synonym>\r
4050                                             <rank>species</rank>\r
4051                                             <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
4052                                           </taxonomy>\r
4053                                         </clade>\r
4054                                         <clade>\r
4055                                           <taxonomy>\r
4056                                             <id provider="uniprot">3988</id>\r
4057                                             <code>RICCO</code>\r
4058                                             <scientific_name>Ricinus communis</scientific_name>\r
4059                                             <common_name>Castor bean</common_name>\r
4060                                             <synonym>Ricinus sanguineus</synonym>\r
4061                                             <rank>species</rank>\r
4062                                             <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
4063                                           </taxonomy>\r
4064                                         </clade>\r
4065                                       </clade>\r
4066                                       <clade>\r
4067                                         <taxonomy>\r
4068                                           <id provider="uniprot">3694</id>\r
4069                                           <code>POPTR</code>\r
4070                                           <scientific_name>Populus trichocarpa</scientific_name>\r
4071                                           <common_name>Western balsam poplar</common_name>\r
4072                                           <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
4073                                           <rank>species</rank>\r
4074                                         </taxonomy>\r
4075                                       </clade>\r
4076                                     </clade>\r
4077                                   </clade>\r
4078                                   <clade>\r
4079                                     <taxonomy>\r
4080                                       <id provider="uniprot">91836</id>\r
4081                                       <scientific_name>malvids</scientific_name>\r
4082                                     </taxonomy>\r
4083                                     <clade>\r
4084                                       <name>Brassicales &amp; Sapindales</name>\r
4085                                       <clade>\r
4086                                         <taxonomy>\r
4087                                           <id provider="uniprot">3699</id>\r
4088                                           <scientific_name>Brassicales</scientific_name>\r
4089                                           <rank>order</rank>\r
4090                                         </taxonomy>\r
4091                                         <clade>\r
4092                                           <taxonomy>\r
4093                                             <id provider="uniprot">3700</id>\r
4094                                             <scientific_name>Brassicaceae</scientific_name>\r
4095                                             <rank>family</rank>\r
4096                                           </taxonomy>\r
4097                                           <clade>\r
4098                                             <taxonomy>\r
4099                                               <id provider="uniprot">3701</id>\r
4100                                               <scientific_name>Arabidopsis</scientific_name>\r
4101                                               <rank>genus</rank>\r
4102                                             </taxonomy>\r
4103                                             <clade>\r
4104                                               <taxonomy>\r
4105                                                 <id provider="uniprot">59689</id>\r
4106                                                 <code>ARALY</code>\r
4107                                                 <scientific_name>Arabidopsis lyrata</scientific_name>\r
4108                                                 <common_name>Lyre-leaved rock-cress</common_name>\r
4109                                                 <synonym>Arabis lyrata</synonym>\r
4110                                                 <rank>species</rank>\r
4111                                               </taxonomy>\r
4112                                             </clade>\r
4113                                             <clade>\r
4114                                               <taxonomy>\r
4115                                                 <id provider="uniprot">3702</id>\r
4116                                                 <code>ARATH</code>\r
4117                                                 <scientific_name>Arabidopsis thaliana</scientific_name>\r
4118                                                 <common_name>Mouse-ear cress</common_name>\r
4119                                                 <rank>species</rank>\r
4120                                               </taxonomy>\r
4121                                             </clade>\r
4122                                           </clade>\r
4123                                           <clade>\r
4124                                             <taxonomy>\r
4125                                               <id provider="uniprot">98038</id>\r
4126                                               <code>THEHA</code>\r
4127                                               <scientific_name>Thellungiella halophila</scientific_name>\r
4128                                               <common_name>Salt cress</common_name>\r
4129                                               <rank>species</rank>\r
4130                                               <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>\r
4131                                             </taxonomy>\r
4132                                           </clade>\r
4133                                         </clade>\r
4134                                         <clade>\r
4135                                           <taxonomy>\r
4136                                             <id provider="uniprot">3649</id>\r
4137                                             <code>CARPA</code>\r
4138                                             <scientific_name>Carica papaya</scientific_name>\r
4139                                             <common_name>Papaya</common_name>\r
4140                                             <rank>species</rank>\r
4141                                             <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
4142                                             <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
4143                                           </taxonomy>\r
4144                                         </clade>\r
4145                                       </clade>\r
4146                                       <clade>\r
4147                                         <taxonomy>\r
4148                                           <id provider="uniprot">2706</id>\r
4149                                           <scientific_name>Citrus</scientific_name>\r
4150                                           <rank>genus</rank>\r
4151                                         </taxonomy>\r
4152                                         <clade>\r
4153                                           <taxonomy>\r
4154                                             <id provider="uniprot">85681</id>\r
4155                                             <code>CCLXX</code>\r
4156                                             <scientific_name>Citrus clementina</scientific_name>\r
4157                                             <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
4158                                             <rank>species</rank>\r
4159                                             <uri>http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg</uri>\r
4160                                           </taxonomy>\r
4161                                         </clade>\r
4162                                         <clade>\r
4163                                           <taxonomy>\r
4164                                             <id provider="uniprot">2711</id>\r
4165                                             <code>CITSI</code>\r
4166                                             <scientific_name>Citrus sinensis</scientific_name>\r
4167                                             <common_name>Sweet orange</common_name>\r
4168                                             <synonym>Citrus x sinensis</synonym>\r
4169                                             <synonym>Citrus aurantium var. sinensis</synonym>\r
4170                                             <rank>species</rank>\r
4171                                             <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
4172                                           </taxonomy>\r
4173                                         </clade>\r
4174                                       </clade>\r
4175                                     </clade>\r
4176                                     <clade>\r
4177                                       <taxonomy>\r
4178                                         <id provider="uniprot">71139</id>\r
4179                                         <code>EUCGR</code>\r
4180                                         <scientific_name>Eucalyptus grandis</scientific_name>\r
4181                                         <common_name>Flooded gum</common_name>\r
4182                                         <rank>species</rank>\r
4183                                         <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
4184                                       </taxonomy>\r
4185                                     </clade>\r
4186                                   </clade>\r
4187                                 </clade>\r
4188                                 <clade>\r
4189                                   <taxonomy>\r
4190                                     <id provider="eol">582304</id>\r
4191                                     <code>VITVI</code>\r
4192                                     <scientific_name>Vitis vinifera</scientific_name>\r
4193                                     <common_name>Grape</common_name>\r
4194                                     <rank>species</rank>\r
4195                                   </taxonomy>\r
4196                                 </clade>\r
4197                               </clade>\r
4198                               <clade>\r
4199                                 <taxonomy>\r
4200                                   <id provider="uniprot">91888</id>\r
4201                                   <scientific_name>lamiids</scientific_name>\r
4202                                 </taxonomy>\r
4203                                 <clade>\r
4204                                   <taxonomy>\r
4205                                     <id provider="uniprot">4070</id>\r
4206                                     <scientific_name>Solanaceae</scientific_name>\r
4207                                     <rank>family</rank>\r
4208                                   </taxonomy>\r
4209                                   <clade>\r
4210                                     <taxonomy>\r
4211                                       <id provider="uniprot">4107</id>\r
4212                                       <scientific_name>Solanum</scientific_name>\r
4213                                       <rank>genus</rank>\r
4214                                     </taxonomy>\r
4215                                     <clade>\r
4216                                       <taxonomy>\r
4217                                         <id provider="uniprot">49274</id>\r
4218                                         <scientific_name>Lycopersicon</scientific_name>\r
4219                                         <rank>subgenus</rank>\r
4220                                       </taxonomy>\r
4221                                       <clade>\r
4222                                         <taxonomy>\r
4223                                           <id provider="uniprot">4081</id>\r
4224                                           <code>SOLLC</code>\r
4225                                           <scientific_name>Solanum lycopersicum</scientific_name>\r
4226                                           <common_name>Tomato</common_name>\r
4227                                           <synonym>Lycopersicon esculentum</synonym>\r
4228                                           <rank>species</rank>\r
4229                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
4230                                         </taxonomy>\r
4231                                       </clade>\r
4232                                       <clade>\r
4233                                         <taxonomy>\r
4234                                           <id provider="uniprot">4084</id>\r
4235                                           <code>SOLPI</code>\r
4236                                           <scientific_name>Solanum pimpinellifolium</scientific_name>\r
4237                                           <common_name>Currant tomato</common_name>\r
4238                                           <synonym>Lycopersicon pimpinellifolium</synonym>\r
4239                                           <rank>species</rank>\r
4240                                           <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>\r
4241                                         </taxonomy>\r
4242                                       </clade>\r
4243                                     </clade>\r
4244                                     <clade>\r
4245                                       <taxonomy>\r
4246                                         <id provider="uniprot">4113</id>\r
4247                                         <code>SOLTU</code>\r
4248                                         <scientific_name>Solanum tuberosum</scientific_name>\r
4249                                         <common_name>Potato</common_name>\r
4250                                         <rank>species</rank>\r
4251                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>\r
4252                                       </taxonomy>\r
4253                                     </clade>\r
4254                                   </clade>\r
4255                                   <clade>\r
4256                                     <taxonomy>\r
4257                                       <id provider="uniprot">4097</id>\r
4258                                       <code>TOBAC</code>\r
4259                                       <scientific_name>Nicotiana tabacum</scientific_name>\r
4260                                       <common_name>Common tobacco</common_name>\r
4261                                       <rank>species</rank>\r
4262                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
4263                                     </taxonomy>\r
4264                                   </clade>\r
4265                                 </clade>\r
4266                                 <clade>\r
4267                                   <taxonomy>\r
4268                                     <id provider="uniprot">4155</id>\r
4269                                     <code>MIMGU</code>\r
4270                                     <scientific_name>Mimulus guttatus</scientific_name>\r
4271                                     <common_name>Yellow monkey flower</common_name>\r
4272                                     <synonym>Yellow monkey flower</synonym>\r
4273                                     <rank>species</rank>\r
4274                                   </taxonomy>\r
4275                                 </clade>\r
4276                               </clade>\r
4277                             </clade>\r
4278                             <clade>\r
4279                               <taxonomy>\r
4280                                 <id provider="uniprot">218851</id>\r
4281                                 <code>AQUCA</code>\r
4282                                 <scientific_name>Aquilegia caerulea</scientific_name>\r
4283                                 <authority>E.James</authority>\r
4284                                 <common_name>Rocky mountain columbine</common_name>\r
4285                                 <synonym>Aquilegia coerulea</synonym>\r
4286                                 <rank>species</rank>\r
4287                                 <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>\r
4288                               </taxonomy>\r
4289                             </clade>\r
4290                           </clade>\r
4291                           <clade>\r
4292                             <taxonomy>\r
4293                               <id provider="uniprot">4447</id>\r
4294                               <scientific_name>Liliopsida</scientific_name>\r
4295                               <common_name>monocots</common_name>\r
4296                               <synonym>Monocotyledoneae</synonym>\r
4297                               <rank>class</rank>\r
4298                             </taxonomy>\r
4299                             <clade>\r
4300                               <taxonomy>\r
4301                                 <id provider="uniprot">4479</id>\r
4302                                 <scientific_name>Poaceae</scientific_name>\r
4303                                 <common_name>grass family</common_name>\r
4304                                 <synonym>Gramineae</synonym>\r
4305                                 <rank>family</rank>\r
4306                               </taxonomy>\r
4307                               <clade>\r
4308                                 <taxonomy>\r
4309                                   <id provider="uniprot">147369</id>\r
4310                                   <scientific_name>Panicoideae</scientific_name>\r
4311                                   <authority>Link, 1827</authority>\r
4312                                   <synonym>Centothecoideae</synonym>\r
4313                                   <rank>subfamily</rank>\r
4314                                 </taxonomy>\r
4315                                 <clade>\r
4316                                   <taxonomy>\r
4317                                     <id provider="uniprot">147429</id>\r
4318                                     <scientific_name>Andropogoneae</scientific_name>\r
4319                                     <authority>Dumort., 1824</authority>\r
4320                                     <rank>tribe</rank>\r
4321                                   </taxonomy>\r
4322                                   <clade>\r
4323                                     <taxonomy>\r
4324                                       <id provider="uniprot">4558</id>\r
4325                                       <code>SORBI</code>\r
4326                                       <scientific_name>Sorghum bicolor</scientific_name>\r
4327                                       <common_name>Sorghum</common_name>\r
4328                                       <synonym>Sorghum vulgare</synonym>\r
4329                                       <rank>species</rank>\r
4330                                     </taxonomy>\r
4331                                   </clade>\r
4332                                   <clade>\r
4333                                     <taxonomy>\r
4334                                       <id provider="uniprot">4577</id>\r
4335                                       <code>MAIZE</code>\r
4336                                       <scientific_name>Zea mays</scientific_name>\r
4337                                       <common_name>Maize</common_name>\r
4338                                       <rank>species</rank>\r
4339                                     </taxonomy>\r
4340                                   </clade>\r
4341                                 </clade>\r
4342                                 <clade>\r
4343                                   <taxonomy>\r
4344                                     <id provider="uniprot">147428</id>\r
4345                                     <scientific_name>Paniceae</scientific_name>\r
4346                                     <rank>tribe</rank>\r
4347                                   </taxonomy>\r
4348                                   <clade>\r
4349                                     <taxonomy>\r
4350                                       <id provider="uniprot">38727</id>\r
4351                                       <code>PANVG</code>\r
4352                                       <scientific_name>Panicum virgatum</scientific_name>\r
4353                                       <common_name>switchgrass</common_name>\r
4354                                       <rank>species</rank>\r
4355                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
4356                                     </taxonomy>\r
4357                                   </clade>\r
4358                                   <clade>\r
4359                                     <taxonomy>\r
4360                                       <id provider="uniprot">4555</id>\r
4361                                       <code>SETIT</code>\r
4362                                       <scientific_name>Setaria italica</scientific_name>\r
4363                                       <common_name>Foxtail millet</common_name>\r
4364                                       <synonym>Panicum italicum</synonym>\r
4365                                       <rank>species</rank>\r
4366                                       <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
4367                                     </taxonomy>\r
4368                                   </clade>\r
4369                                 </clade>\r
4370                               </clade>\r
4371                               <clade>\r
4372                                 <taxonomy>\r
4373                                   <id provider="uniprot">359160</id>\r
4374                                   <scientific_name>BEP clade</scientific_name>\r
4375                                 </taxonomy>\r
4376                                 <clade>\r
4377                                   <taxonomy>\r
4378                                     <id provider="uniprot">4527</id>\r
4379                                     <scientific_name>Oryza</scientific_name>\r
4380                                     <rank>genus</rank>\r
4381                                   </taxonomy>\r
4382                                   <clade>\r
4383                                     <taxonomy>\r
4384                                       <id provider="uniprot">4530</id>\r
4385                                       <code>ORYSA</code>\r
4386                                       <scientific_name>Oryza sativa</scientific_name>\r
4387                                       <common_name>Rice</common_name>\r
4388                                       <rank>species</rank>\r
4389                                     </taxonomy>\r
4390                                   </clade>\r
4391                                   <clade>\r
4392                                     <taxonomy>\r
4393                                       <id provider="uniprot">39947</id>\r
4394                                       <code>ORYSJ</code>\r
4395                                       <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
4396                                       <common_name>Rice</common_name>\r
4397                                     </taxonomy>\r
4398                                   </clade>\r
4399                                 </clade>\r
4400                                 <clade>\r
4401                                   <taxonomy>\r
4402                                     <id provider="uniprot">147368</id>\r
4403                                     <scientific_name>Pooideae</scientific_name>\r
4404                                     <rank>subfamily</rank>\r
4405                                   </taxonomy>\r
4406                                   <clade>\r
4407                                     <taxonomy>\r
4408                                       <id provider="uniprot">15368</id>\r
4409                                       <code>BRADI</code>\r
4410                                       <scientific_name>Brachypodium distachyon</scientific_name>\r
4411                                       <common_name>Purple false brome</common_name>\r
4412                                       <synonym>Trachynia distachya</synonym>\r
4413                                       <rank>species</rank>\r
4414                                       <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>\r
4415                                     </taxonomy>\r
4416                                   </clade>\r
4417                                   <clade>\r
4418                                     <taxonomy>\r
4419                                       <id provider="uniprot">112509</id>\r
4420                                       <code>HORVD</code>\r
4421                                       <scientific_name>Hordeum vulgare var. distichum</scientific_name>\r
4422                                       <common_name>Two-rowed barley</common_name>\r
4423                                       <rank>subspecies</rank>\r
4424                                       <uri>http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg</uri>\r
4425                                     </taxonomy>\r
4426                                   </clade>\r
4427                                 </clade>\r
4428                               </clade>\r
4429                             </clade>\r
4430                             <clade>\r
4431                               <taxonomy>\r
4432                                 <id provider="uniprot">4641</id>\r
4433                                 <code>MUSAC</code>\r
4434                                 <scientific_name>Musa acuminata</scientific_name>\r
4435                                 <common_name>Banana</common_name>\r
4436                                 <synonym>Musa cavendishii</synonym>\r
4437                                 <rank>species</rank>\r
4438                                 <uri>http://upload.wikimedia.org/wikipedia/commons/f/fd/Musa_acuminata1.jpg</uri>\r
4439                               </taxonomy>\r
4440                             </clade>\r
4441                           </clade>\r
4442                         </clade>\r
4443                         <clade>\r
4444                           <taxonomy>\r
4445                             <id provider="uniprot">3329</id>\r
4446                             <code>PICAB</code>\r
4447                             <scientific_name>Picea abies</scientific_name>\r
4448                             <authority>H.Karst</authority>\r
4449                             <common_name>Norway spruce</common_name>\r
4450                             <synonym>Picea excelsa</synonym>\r
4451                             <rank>species</rank>\r
4452                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>\r
4453                           </taxonomy>\r
4454                         </clade>\r
4455                       </clade>\r
4456                       <clade>\r
4457                         <taxonomy>\r
4458                           <id provider="uniprot">88036</id>\r
4459                           <code>SELML</code>\r
4460                           <scientific_name>Selaginella moellendorffii</scientific_name>\r
4461                           <authority>Hieron</authority>\r
4462                           <common_name>Spikemoss</common_name>\r
4463                           <rank>species</rank>\r
4464                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>\r
4465                         </taxonomy>\r
4466                       </clade>\r
4467                     </clade>\r
4468                     <clade>\r
4469                       <taxonomy>\r
4470                         <id provider="uniprot">145481</id>\r
4471                         <code>PHYPA</code>\r
4472                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
4473                         <common_name>Moss</common_name>\r
4474                         <rank>subspecies</rank>\r
4475                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>\r
4476                       </taxonomy>\r
4477                     </clade>\r
4478                   </clade>\r
4479                   <clade>\r
4480                     <taxonomy>\r
4481                       <id provider="uniprot">3041</id>\r
4482                       <scientific_name>Chlorophyta</scientific_name>\r
4483                       <rank>phylum</rank>\r
4484                     </taxonomy>\r
4485                     <clade>\r
4486                       <taxonomy>\r
4487                         <id provider="uniprot">13792</id>\r
4488                         <scientific_name>Mamiellales</scientific_name>\r
4489                         <rank>order</rank>\r
4490                       </taxonomy>\r
4491                       <clade>\r
4492                         <taxonomy>\r
4493                           <id provider="uniprot">70447</id>\r
4494                           <scientific_name>Ostreococcus</scientific_name>\r
4495                           <rank>genus</rank>\r
4496                         </taxonomy>\r
4497                         <clade>\r
4498                           <taxonomy>\r
4499                             <id provider="uniprot">436017</id>\r
4500                             <code>OSTLU</code>\r
4501                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
4502                           </taxonomy>\r
4503                         </clade>\r
4504                         <clade>\r
4505                           <taxonomy>\r
4506                             <id provider="uniprot">385169</id>\r
4507                             <code>ORCXX</code>\r
4508                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>\r
4509                             <rank>species</rank>\r
4510                           </taxonomy>\r
4511                         </clade>\r
4512                         <clade>\r
4513                           <taxonomy>\r
4514                             <id provider="uniprot">70448</id>\r
4515                             <code>OSTTA</code>\r
4516                             <scientific_name>Ostreococcus tauri</scientific_name>\r
4517                             <rank>species</rank>\r
4518                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>\r
4519                           </taxonomy>\r
4520                         </clade>\r
4521                       </clade>\r
4522                       <clade>\r
4523                         <taxonomy>\r
4524                           <id provider="uniprot">38832</id>\r
4525                           <scientific_name>Micromonas</scientific_name>\r
4526                           <rank>genus</rank>\r
4527                         </taxonomy>\r
4528                         <clade>\r
4529                           <taxonomy>\r
4530                             <id provider="uniprot">564608</id>\r
4531                             <code>MICPC</code>\r
4532                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
4533                             <common_name>Picoplanktonic green alga</common_name>\r
4534                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>\r
4535                           </taxonomy>\r
4536                         </clade>\r
4537                         <clade>\r
4538                           <taxonomy>\r
4539                             <id provider="uniprot">296587</id>\r
4540                             <code>MICSR</code>\r
4541                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
4542                             <common_name>Picoplanktonic green alga</common_name>\r
4543                             <synonym>Micromonas sp. RCC299</synonym>\r
4544                             <rank>species</rank>\r
4545                           </taxonomy>\r
4546                         </clade>\r
4547                       </clade>\r
4548                     </clade>\r
4549                     <clade>\r
4550                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
4551                       <clade>\r
4552                         <taxonomy>\r
4553                           <id provider="uniprot">75966</id>\r
4554                           <scientific_name>Trebouxiophyceae</scientific_name>\r
4555                           <rank>class</rank>\r
4556                         </taxonomy>\r
4557                         <clade>\r
4558                           <taxonomy>\r
4559                             <id provider="uniprot">763042</id>\r
4560                             <code>ASCXX</code>\r
4561                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
4562                             <rank>species</rank>\r
4563                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
4564                           </taxonomy>\r
4565                         </clade>\r
4566                         <clade>\r
4567                           <taxonomy>\r
4568                             <id provider="uniprot">554065</id>\r
4569                             <code>CHLVA</code>\r
4570                             <scientific_name>Chlorella variabilis</scientific_name>\r
4571                             <authority>Shihira &amp; Krauss 1965</authority>\r
4572                             <common_name>Green alga</common_name>\r
4573                             <synonym>Chlorella sp. NC64A</synonym>\r
4574                             <synonym>Chlorella sp. Bnd1-ZK</synonym>\r
4575                             <rank>species</rank>\r
4576                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>\r
4577                           </taxonomy>\r
4578                         </clade>\r
4579                         <clade>\r
4580                           <taxonomy>\r
4581                             <id provider="uniprot">574566</id>\r
4582                             <code>CSUXX</code>\r
4583                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>\r
4584                             <synonym>Chlorella vulgaris C-169</synonym>\r
4585                             <synonym>Coccomyxa sp. C-169</synonym>\r
4586                             <rank>species</rank>\r
4587                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>\r
4588                           </taxonomy>\r
4589                         </clade>\r
4590                       </clade>\r
4591                       <clade>\r
4592                         <taxonomy>\r
4593                           <id provider="uniprot">3042</id>\r
4594                           <scientific_name>Chlamydomonadales</scientific_name>\r
4595                           <rank>order</rank>\r
4596                         </taxonomy>\r
4597                         <clade>\r
4598                           <taxonomy>\r
4599                             <id provider="uniprot">3055</id>\r
4600                             <code>CHLRE</code>\r
4601                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
4602                             <synonym>Chlamydomonas smithii</synonym>\r
4603                             <rank>species</rank>\r
4604                             <uri>http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif</uri>\r
4605                           </taxonomy>\r
4606                         </clade>\r
4607                         <clade>\r
4608                           <taxonomy>\r
4609                             <id provider="uniprot">3067</id>\r
4610                             <code>VOLCA</code>\r
4611                             <scientific_name>Volvox carteri</scientific_name>\r
4612                             <common_name>Green alga</common_name>\r
4613                             <rank>species</rank>\r
4614                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>\r
4615                           </taxonomy>\r
4616                         </clade>\r
4617                       </clade>\r
4618                     </clade>\r
4619                   </clade>\r
4620                 </clade>\r
4621                 <clade>\r
4622                   <taxonomy>\r
4623                     <id provider="uniprot">2763</id>\r
4624                     <scientific_name>Rhodophyta</scientific_name>\r
4625                     <common_name>red algae</common_name>\r
4626                   </taxonomy>\r
4627                   <clade>\r
4628                     <taxonomy>\r
4629                       <id provider="uniprot">265316</id>\r
4630                       <scientific_name>Cyanidiaceae</scientific_name>\r
4631                       <rank>family</rank>\r
4632                     </taxonomy>\r
4633                     <clade>\r
4634                       <taxonomy>\r
4635                         <id provider="uniprot">45157</id>\r
4636                         <code>CYAME</code>\r
4637                         <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
4638                         <common_name>Red alga</common_name>\r
4639                         <rank>species</rank>\r
4640                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>\r
4641                       </taxonomy>\r
4642                     </clade>\r
4643                     <clade>\r
4644                       <taxonomy>\r
4645                         <id provider="uniprot">130081</id>\r
4646                         <code>GALSU</code>\r
4647                         <scientific_name>Galdieria sulphuraria</scientific_name>\r
4648                         <common_name>Red alga</common_name>\r
4649                         <rank>species</rank>\r
4650                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>\r
4651                       </taxonomy>\r
4652                     </clade>\r
4653                   </clade>\r
4654                   <clade>\r
4655                     <taxonomy>\r
4656                       <id provider="uniprot">2769</id>\r
4657                       <code>CHOCR</code>\r
4658                       <scientific_name>Chondrus crispus</scientific_name>\r
4659                       <common_name>Carragheen moss</common_name>\r
4660                       <synonym>Irish moss</synonym>\r
4661                       <rank>species</rank>\r
4662                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>\r
4663                     </taxonomy>\r
4664                   </clade>\r
4665                 </clade>\r
4666                 <clade>\r
4667                   <taxonomy>\r
4668                     <id provider="uniprot">38254</id>\r
4669                     <scientific_name>Glaucocystophyceae</scientific_name>\r
4670                     <synonym>Glaucophyta</synonym>\r
4671                     <rank>class</rank>\r
4672                   </taxonomy>\r
4673                   <clade>\r
4674                     <taxonomy>\r
4675                       <id provider="uniprot">2762</id>\r
4676                       <code>CYAPA</code>\r
4677                       <scientific_name>Cyanophora paradoxa</scientific_name>\r
4678                       <rank>species</rank>\r
4679                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>\r
4680                     </taxonomy>\r
4681                   </clade>\r
4682                   <clade>\r
4683                     <taxonomy>\r
4684                       <id provider="uniprot">38271</id>\r
4685                       <scientific_name>Glaucocystis nostochinearum</scientific_name>\r
4686                       <rank>species</rank>\r
4687                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>\r
4688                     </taxonomy>\r
4689                   </clade>\r
4690                 </clade>\r
4691               </clade>\r
4692               <clade>\r
4693                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>\r
4694                 <clade>\r
4695                   <taxonomy>\r
4696                     <id provider="uniprot">2903</id>\r
4697                     <code>EMIHU</code>\r
4698                     <scientific_name>Emiliania huxleyi</scientific_name>\r
4699                     <synonym>Pontosphaera huxleyi</synonym>\r
4700                     <rank>species</rank>\r
4701                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>\r
4702                   </taxonomy>\r
4703                 </clade>\r
4704                 <clade>\r
4705                   <taxonomy>\r
4706                     <id provider="uniprot">55529</id>\r
4707                     <code>GUITH</code>\r
4708                     <scientific_name>Guillardia theta</scientific_name>\r
4709                     <synonym>Cryptomonas phi</synonym>\r
4710                     <rank>species</rank>\r
4711                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>\r
4712                   </taxonomy>\r
4713                   <reference doi="10.1016/j.cub.2007.03.069">\r
4714                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>\r
4715                   </reference>\r
4716                   <reference>\r
4717                   </reference>\r
4718                 </clade>\r
4719               </clade>\r
4720             </clade>\r
4721             <clade>\r
4722               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>\r
4723               <reference doi="10.1186/1471-2148-10-377">\r
4724                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>\r
4725               </reference>\r
4726               <reference>\r
4727               </reference>\r
4728               <clade>\r
4729                 <name>Stramenopiles &amp; Alveolata</name>\r
4730                 <clade>\r
4731                   <taxonomy>\r
4732                     <id provider="uniprot">33630</id>\r
4733                     <scientific_name>Alveolata</scientific_name>\r
4734                     <rank>superphylum</rank>\r
4735                   </taxonomy>\r
4736                   <clade>\r
4737                     <name>Apicomplexa &amp; Dinophyceae</name>\r
4738                     <clade>\r
4739                       <taxonomy>\r
4740                         <id provider="uniprot">5794</id>\r
4741                         <scientific_name>Apicomplexa</scientific_name>\r
4742                         <rank>phylum</rank>\r
4743                       </taxonomy>\r
4744                       <reference doi="10.1101/gr.083386.108">\r
4745                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>\r
4746                       </reference>\r
4747                       <reference>\r
4748                       </reference>\r
4749                       <clade>\r
4750                         <name>Aconoidasida &amp; Coccidia</name>\r
4751                         <clade>\r
4752                           <taxonomy>\r
4753                             <id provider="uniprot">422676</id>\r
4754                             <scientific_name>Aconoidasida</scientific_name>\r
4755                             <authority>Mehlhorn et al. 1980</authority>\r
4756                             <synonym>Hematozoa</synonym>\r
4757                             <rank>class</rank>\r
4758                           </taxonomy>\r
4759                           <clade>\r
4760                             <taxonomy>\r
4761                               <id provider="uniprot">5820</id>\r
4762                               <scientific_name>Plasmodium</scientific_name>\r
4763                               <rank>genus</rank>\r
4764                             </taxonomy>\r
4765                             <clade>\r
4766                               <taxonomy>\r
4767                                 <id provider="uniprot">5825</id>\r
4768                                 <code>PLACH</code>\r
4769                                 <scientific_name>Plasmodium chabaudi</scientific_name>\r
4770                                 <rank>species</rank>\r
4771                               </taxonomy>\r
4772                             </clade>\r
4773                             <clade>\r
4774                               <taxonomy>\r
4775                                 <id provider="uniprot">36329</id>\r
4776                                 <code>PLAF7</code>\r
4777                                 <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>\r
4778                               </taxonomy>\r
4779                             </clade>\r
4780                             <clade>\r
4781                               <taxonomy>\r
4782                                 <id provider="uniprot">73239</id>\r
4783                                 <code>PLAYO</code>\r
4784                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
4785                                 <rank>subspecies</rank>\r
4786                               </taxonomy>\r
4787                             </clade>\r
4788                             <clade>\r
4789                               <taxonomy>\r
4790                                 <id provider="uniprot">126793</id>\r
4791                                 <code>PLAVS</code>\r
4792                                 <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>\r
4793                               </taxonomy>\r
4794                             </clade>\r
4795                           </clade>\r
4796                           <clade>\r
4797                             <taxonomy>\r
4798                               <id provider="uniprot">5863</id>\r
4799                               <scientific_name>Piroplasmida</scientific_name>\r
4800                               <common_name>Piroplasmids</common_name>\r
4801                               <rank>order</rank>\r
4802                             </taxonomy>\r
4803                             <clade>\r
4804                               <name>Theileria</name>\r
4805                               <taxonomy>\r
4806                                 <id provider="uniprot">5873</id>\r
4807                                 <scientific_name>Theileria</scientific_name>\r
4808                                 <rank>genus</rank>\r
4809                               </taxonomy>\r
4810                               <clade>\r
4811                                 <taxonomy>\r
4812                                   <id provider="uniprot">5874</id>\r
4813                                   <code>THEAN</code>\r
4814                                   <scientific_name>Theileria annulata</scientific_name>\r
4815                                   <rank>species</rank>\r
4816                                 </taxonomy>\r
4817                               </clade>\r
4818                               <clade>\r
4819                                 <taxonomy>\r
4820                                   <id provider="uniprot">5875</id>\r
4821                                   <code>THEPA</code>\r
4822                                   <scientific_name>Theileria parva</scientific_name>\r
4823                                   <common_name>East coast fever infection agent</common_name>\r
4824                                   <rank>species</rank>\r
4825                                 </taxonomy>\r
4826                               </clade>\r
4827                             </clade>\r
4828                             <clade>\r
4829                               <taxonomy>\r
4830                                 <id provider="uniprot">5865</id>\r
4831                                 <code>BABBO</code>\r
4832                                 <scientific_name>Babesia bovis</scientific_name>\r
4833                                 <rank>species</rank>\r
4834                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>\r
4835                               </taxonomy>\r
4836                             </clade>\r
4837                           </clade>\r
4838                         </clade>\r
4839                         <clade>\r
4840                           <taxonomy>\r
4841                             <id provider="uniprot">5796</id>\r
4842                             <scientific_name>Coccidia</scientific_name>\r
4843                             <common_name>coccidians</common_name>\r
4844                             <rank>subclass</rank>\r
4845                           </taxonomy>\r
4846                           <reference doi="10.1093/molbev/msn213">\r
4847                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
4848                           </reference>\r
4849                           <reference>\r
4850                           </reference>\r
4851                           <clade>\r
4852                             <taxonomy>\r
4853                               <id provider="uniprot">5802</id>\r
4854                               <code>EIMTE</code>\r
4855                               <scientific_name>Eimeria tenella</scientific_name>\r
4856                               <common_name>Coccidian parasite</common_name>\r
4857                               <rank>species</rank>\r
4858                               <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
4859                             </taxonomy>\r
4860                           </clade>\r
4861                           <clade>\r
4862                             <taxonomy>\r
4863                               <id provider="uniprot">5811</id>\r
4864                               <code>TOXGO</code>\r
4865                               <scientific_name>Toxoplasma gondii</scientific_name>\r
4866                               <rank>species</rank>\r
4867                             </taxonomy>\r
4868                           </clade>\r
4869                         </clade>\r
4870                       </clade>\r
4871                       <clade>\r
4872                         <taxonomy>\r
4873                           <id provider="uniprot">5806</id>\r
4874                           <scientific_name>Cryptosporidium</scientific_name>\r
4875                           <rank>genus</rank>\r
4876                         </taxonomy>\r
4877                         <clade>\r
4878                           <taxonomy>\r
4879                             <id provider="uniprot">237895</id>\r
4880                             <code>CRYHO</code>\r
4881                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
4882                             <rank>species</rank>\r
4883                           </taxonomy>\r
4884                         </clade>\r
4885                         <clade>\r
4886                           <taxonomy>\r
4887                             <id provider="uniprot">5807</id>\r
4888                             <code>CRYPV</code>\r
4889                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
4890                             <rank>species</rank>\r
4891                           </taxonomy>\r
4892                         </clade>\r
4893                         <clade>\r
4894                           <taxonomy>\r
4895                             <id provider="uniprot">353152</id>\r
4896                             <code>CRYPI</code>\r
4897                             <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>\r
4898                           </taxonomy>\r
4899                         </clade>\r
4900                       </clade>\r
4901                     </clade>\r
4902                     <clade>\r
4903                       <taxonomy>\r
4904                         <id provider="uniprot">2864</id>\r
4905                         <scientific_name>Dinophyceae</scientific_name>\r
4906                         <authority>Fritsch, 1927</authority>\r
4907                         <common_name>dinoflagellates</common_name>\r
4908                         <synonym>Chromophyta</synonym>\r
4909                         <synonym>Dinoflagellata</synonym>\r
4910                         <synonym>Pyrrophyta</synonym>\r
4911                         <rank>class</rank>\r
4912                       </taxonomy>\r
4913                       <clade>\r
4914                         <taxonomy>\r
4915                           <id provider="uniprot">2866</id>\r
4916                           <code>CRYCO</code>\r
4917                           <scientific_name>Crypthecodinium cohnii</scientific_name>\r
4918                           <common_name>Dinoflagellate</common_name>\r
4919                           <rank>species</rank>\r
4920                           <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>\r
4921                         </taxonomy>\r
4922                       </clade>\r
4923                       <clade>\r
4924                         <taxonomy>\r
4925                           <id provider="uniprot">2923</id>\r
4926                           <code>THOHE</code>\r
4927                           <scientific_name>Thoracosphaera heimii</scientific_name>\r
4928                           <common_name>Dinoflagellate</common_name>\r
4929                           <rank>species</rank>\r
4930                           <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>\r
4931                         </taxonomy>\r
4932                       </clade>\r
4933                     </clade>\r
4934                   </clade>\r
4935                   <clade>\r
4936                     <taxonomy>\r
4937                       <id provider="uniprot">5878</id>\r
4938                       <scientific_name>Ciliophora</scientific_name>\r
4939                       <common_name>ciliates</common_name>\r
4940                       <rank>phylum</rank>\r
4941                     </taxonomy>\r
4942                     <clade>\r
4943                       <taxonomy>\r
4944                         <id provider="uniprot">431838</id>\r
4945                         <scientific_name>Intramacronucleata</scientific_name>\r
4946                         <rank>subphylum</rank>\r
4947                       </taxonomy>\r
4948                       <clade>\r
4949                         <taxonomy>\r
4950                           <id provider="uniprot">6020</id>\r
4951                           <scientific_name>Oligohymenophorea</scientific_name>\r
4952                           <rank>class</rank>\r
4953                         </taxonomy>\r
4954                         <clade>\r
4955                           <taxonomy>\r
4956                             <id provider="uniprot">5888</id>\r
4957                             <code>PARTE</code>\r
4958                             <scientific_name>Paramecium tetraurelia</scientific_name>\r
4959                             <rank>species</rank>\r
4960                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>\r
4961                           </taxonomy>\r
4962                         </clade>\r
4963                         <clade>\r
4964                           <taxonomy>\r
4965                             <id provider="uniprot">312017</id>\r
4966                             <code>TETTS</code>\r
4967                             <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>\r
4968                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>\r
4969                           </taxonomy>\r
4970                         </clade>\r
4971                       </clade>\r
4972                       <clade>\r
4973                         <taxonomy>\r
4974                           <id provider="uniprot">1172189</id>\r
4975                           <code>OTRXX</code>\r
4976                           <scientific_name>Oxytricha trifallax</scientific_name>\r
4977                           <authority>Stein, 1859</authority>\r
4978                           <rank>species</rank>\r
4979                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>\r
4980                         </taxonomy>\r
4981                       </clade>\r
4982                     </clade>\r
4983                     <clade>\r
4984                       <taxonomy>\r
4985                         <id provider="uniprot">5961</id>\r
4986                         <code>BLEJA</code>\r
4987                         <scientific_name>Blepharisma japonicum</scientific_name>\r
4988                         <rank>species</rank>\r
4989                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>\r
4990                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>\r
4991                       </taxonomy>\r
4992                     </clade>\r
4993                   </clade>\r
4994                 </clade>\r
4995                 <clade>\r
4996                   <taxonomy>\r
4997                     <id provider="uniprot">33634</id>\r
4998                     <scientific_name>Stramenopiles</scientific_name>\r
4999                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>\r
5000                     <synonym>Chromophyta</synonym>\r
5001                     <synonym>heterokonts</synonym>\r
5002                     <synonym>Heterokontophyta</synonym>\r
5003                   </taxonomy>\r
5004                   <clade>\r
5005                     <name>Labyrinthulomycetes &amp; Ochrophyta &amp; Oomycetes</name>\r
5006                     <taxonomy>\r
5007                     </taxonomy>\r
5008                     <sequence>\r
5009                     </sequence>\r
5010                     <clade>\r
5011                       <name>Ochrophyta &amp; Oomycetes</name>\r
5012                       <reference doi="10.1016/j.protis.2008.11.004">\r
5013                         <desc>Seven Gene Phylogeny of Heterokonts</desc>\r
5014                       </reference>\r
5015                       <reference>\r
5016                       </reference>\r
5017                       <clade>\r
5018                         <taxonomy>\r
5019                           <scientific_name>Ochrophyta</scientific_name>\r
5020                         </taxonomy>\r
5021                         <clade>\r
5022                           <taxonomy>\r
5023                             <id provider="uniprot">2836</id>\r
5024                             <scientific_name>Bacillariophyta</scientific_name>\r
5025                             <common_name>diatoms</common_name>\r
5026                             <rank>class</rank>\r
5027                           </taxonomy>\r
5028                           <clade>\r
5029                             <taxonomy>\r
5030                               <id provider="uniprot">33850</id>\r
5031                               <scientific_name>Bacillariophycidae</scientific_name>\r
5032                             </taxonomy>\r
5033                             <clade>\r
5034                               <taxonomy>\r
5035                                 <id provider="uniprot">186039</id>\r
5036                                 <code>FCYXX</code>\r
5037                                 <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
5038                                 <authority>Krieger</authority>\r
5039                                 <synonym>Nitzschia cylindrus</synonym>\r
5040                                 <rank>species</rank>\r
5041                                 <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>\r
5042                               </taxonomy>\r
5043                             </clade>\r
5044                             <clade>\r
5045                               <taxonomy>\r
5046                                 <id provider="uniprot">2850</id>\r
5047                                 <code>PHATR</code>\r
5048                                 <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
5049                                 <authority>Bohlin</authority>\r
5050                                 <rank>species</rank>\r
5051                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>\r
5052                               </taxonomy>\r
5053                             </clade>\r
5054                           </clade>\r
5055                           <clade>\r
5056                             <taxonomy>\r
5057                               <id provider="uniprot">35127</id>\r
5058                               <scientific_name>Thalassiosira</scientific_name>\r
5059                               <rank>genus</rank>\r
5060                             </taxonomy>\r
5061                             <clade>\r
5062                               <taxonomy>\r
5063                                 <id provider="uniprot">35128</id>\r
5064                                 <code>THAPS</code>\r
5065                                 <scientific_name>Thalassiosira pseudonana</scientific_name>\r
5066                                 <authority>Hasle &amp; Heimdal</authority>\r
5067                                 <common_name>Marine diatom</common_name>\r
5068                                 <synonym>Cyclotella nana</synonym>\r
5069                                 <rank>species</rank>\r
5070                                 <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>\r
5071                               </taxonomy>\r
5072                             </clade>\r
5073                             <clade>\r
5074                               <taxonomy>\r
5075                                 <id provider="uniprot">159749</id>\r
5076                                 <code>THAOC</code>\r
5077                                 <scientific_name>Thalassiosira oceanica</scientific_name>\r
5078                                 <common_name>Marine diatom</common_name>\r
5079                                 <rank>species</rank>\r
5080                               </taxonomy>\r
5081                             </clade>\r
5082                           </clade>\r
5083                         </clade>\r
5084                         <clade>\r
5085                           <name>Pelagophyceae &amp; Phaeophyceae</name>\r
5086                           <taxonomy>\r
5087                           </taxonomy>\r
5088                           <reference doi="10.1128/AEM.06952-11">\r
5089                             <desc>Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean</desc>\r
5090                           </reference>\r
5091                           <reference>\r
5092                           </reference>\r
5093                           <clade>\r
5094                             <taxonomy>\r
5095                               <id provider="uniprot">44056</id>\r
5096                               <code>AURAN</code>\r
5097                               <scientific_name>Aureococcus anophagefferens</scientific_name>\r
5098                               <authority>Hargraves &amp; Sieburth</authority>\r
5099                               <common_name>Harmful bloom alga</common_name>\r
5100                               <rank>species</rank>\r
5101                               <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>\r
5102                             </taxonomy>\r
5103                           </clade>\r
5104                           <clade>\r
5105                             <taxonomy>\r
5106                               <id provider="uniprot">2880</id>\r
5107                               <code>ECTSI</code>\r
5108                               <scientific_name>Ectocarpus siliculosus</scientific_name>\r
5109                               <common_name>Brown alga</common_name>\r
5110                               <rank>species</rank>\r
5111                               <uri>http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg</uri>\r
5112                             </taxonomy>\r
5113                           </clade>\r
5114                         </clade>\r
5115                       </clade>\r
5116                       <clade>\r
5117                         <taxonomy>\r
5118                           <id provider="uniprot">4762</id>\r
5119                           <scientific_name>Oomycetes</scientific_name>\r
5120                         </taxonomy>\r
5121                         <clade>\r
5122                           <taxonomy>\r
5123                             <id provider="uniprot">4776</id>\r
5124                             <scientific_name>Peronosporales</scientific_name>\r
5125                             <rank>order</rank>\r
5126                           </taxonomy>\r
5127                           <clade>\r
5128                             <taxonomy>\r
5129                               <id provider="uniprot">4783</id>\r
5130                               <scientific_name>Phytophthora</scientific_name>\r
5131                               <rank>genus</rank>\r
5132                             </taxonomy>\r
5133                             <clade>\r
5134                               <taxonomy>\r
5135                                 <id provider="uniprot">4787</id>\r
5136                                 <code>PHYIN</code>\r
5137                                 <scientific_name>Phytophthora infestans</scientific_name>\r
5138                                 <authority>(Mont.) de Bary 1876</authority>\r
5139                                 <common_name>Potato late blight fungus</common_name>\r
5140                                 <rank>species</rank>\r
5141                                 <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>\r
5142                               </taxonomy>\r
5143                             </clade>\r
5144                             <clade>\r
5145                               <taxonomy>\r
5146                                 <id provider="uniprot">164328</id>\r
5147                                 <code>PHYRM</code>\r
5148                                 <scientific_name>Phytophthora ramorum</scientific_name>\r
5149                                 <common_name>Sudden oak death agent</common_name>\r
5150                                 <rank>species</rank>\r
5151                                 <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>\r
5152                               </taxonomy>\r
5153                             </clade>\r
5154                             <clade>\r
5155                               <taxonomy>\r
5156                                 <id provider="uniprot">67593</id>\r
5157                                 <code>PHYSO</code>\r
5158                                 <scientific_name>Phytophthora sojae</scientific_name>\r
5159                                 <common_name>Soybean stem and root rot agent</common_name>\r
5160                                 <synonym>Phytophthora megasperma f. sp. glycines</synonym>\r
5161                                 <rank>species</rank>\r
5162                                 <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>\r
5163                               </taxonomy>\r
5164                             </clade>\r
5165                             <clade>\r
5166                               <taxonomy>\r
5167                                 <id provider="uniprot">4785</id>\r
5168                                 <code>PHYCI</code>\r
5169                                 <scientific_name>Phytophthora cinnamomi</scientific_name>\r
5170                                 <common_name>Cinnamon fungus</common_name>\r
5171                                 <rank>species</rank>\r
5172                                 <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>\r
5173                               </taxonomy>\r
5174                             </clade>\r
5175                             <clade>\r
5176                               <taxonomy>\r
5177                                 <id provider="uniprot">4784</id>\r
5178                                 <code>PHYCP</code>\r
5179                                 <scientific_name>Phytophthora capsici</scientific_name>\r
5180                                 <rank>species</rank>\r
5181                                 <uri>http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg</uri>\r
5182                               </taxonomy>\r
5183                             </clade>\r
5184                           </clade>\r
5185                           <clade>\r
5186                             <taxonomy>\r
5187                               <id provider="uniprot">559515</id>\r
5188                               <code>HYAAE</code>\r
5189                               <scientific_name>Hyaloperonospora arabidopsidis (strain Emoy2)</scientific_name>\r
5190                               <common_name>Downy mildew agent</common_name>\r
5191                               <synonym>Peronospora arabidopsidis</synonym>\r
5192                               <uri>http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg</uri>\r
5193                             </taxonomy>\r
5194                           </clade>\r
5195                         </clade>\r
5196                         <clade>\r
5197                           <taxonomy>\r
5198                             <id provider="uniprot">65071</id>\r
5199                             <code>PYTUL</code>\r
5200                             <scientific_name>Pythium ultimum</scientific_name>\r
5201                             <rank>species</rank>\r
5202                             <uri>http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg</uri>\r
5203                           </taxonomy>\r
5204                         </clade>\r
5205                       </clade>\r
5206                     </clade>\r
5207                     <clade>\r
5208                       <taxonomy>\r
5209                         <id provider="uniprot">33674</id>\r
5210                         <scientific_name>Thraustochytriaceae</scientific_name>\r
5211                         <synonym>Thraustochytriales</synonym>\r
5212                         <rank>family</rank>\r
5213                       </taxonomy>\r
5214                       <clade>\r
5215                         <taxonomy>\r
5216                           <id provider="uniprot">702273</id>\r
5217                           <code>AKEXX</code>\r
5218                           <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>\r
5219                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>\r
5220                         </taxonomy>\r
5221                       </clade>\r
5222                       <clade>\r
5223                         <taxonomy>\r
5224                           <id provider="uniprot">876976</id>\r
5225                           <code>SAGXX</code>\r
5226                           <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>\r
5227                           <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>\r
5228                         </taxonomy>\r
5229                       </clade>\r
5230                       <clade>\r
5231                         <taxonomy>\r
5232                           <id provider="uniprot">87102</id>\r
5233                           <code>ALIXX</code>\r
5234                           <scientific_name>Aurantiochytrium limacinum</scientific_name>\r
5235                           <synonym>Schizochytrium limacinum</synonym>\r
5236                           <rank>species</rank>\r
5237                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>\r
5238                         </taxonomy>\r
5239                       </clade>\r
5240                     </clade>\r
5241                   </clade>\r
5242                   <clade>\r
5243                     <taxonomy>\r
5244                       <id provider="uniprot">12968</id>\r
5245                       <code>BLAHO</code>\r
5246                       <scientific_name>Blastocystis hominis</scientific_name>\r
5247                       <rank>species</rank>\r
5248                     </taxonomy>\r
5249                   </clade>\r
5250                 </clade>\r
5251               </clade>\r
5252               <clade>\r
5253                 <taxonomy>\r
5254                   <id provider="uniprot">543769</id>\r
5255                   <scientific_name>Rhizaria</scientific_name>\r
5256                 </taxonomy>\r
5257                 <clade>\r
5258                   <taxonomy>\r
5259                     <id provider="uniprot">71427</id>\r
5260                     <scientific_name>Allogromia laticollaris</scientific_name>\r
5261                     <rank>species</rank>\r
5262                     <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
5263                   </taxonomy>\r
5264                 </clade>\r
5265                 <clade>\r
5266                   <taxonomy>\r
5267                     <id provider="uniprot">227086</id>\r
5268                     <code>BIGNA</code>\r
5269                     <scientific_name>Bigelowiella natans</scientific_name>\r
5270                     <common_name>Pedinomonas minutissima</common_name>\r
5271                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>\r
5272                     <synonym>Pedinomonas minutissima</synonym>\r
5273                     <rank>species</rank>\r
5274                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>\r
5275                   </taxonomy>\r
5276                 </clade>\r
5277               </clade>\r
5278             </clade>\r
5279           </clade>\r
5280           <clade>\r
5281             <name>Excavata</name>\r
5282             <reference doi="10.1038/nature04546">\r
5283             </reference>\r
5284             <clade>\r
5285               <name>Kinetoplastida &amp; Heterolobosea</name>\r
5286               <clade>\r
5287                 <taxonomy>\r
5288                   <id provider="uniprot">5654</id>\r
5289                   <scientific_name>Trypanosomatidae</scientific_name>\r
5290                   <rank>family</rank>\r
5291                 </taxonomy>\r
5292                 <clade>\r
5293                   <taxonomy>\r
5294                     <id provider="uniprot">5690</id>\r
5295                     <scientific_name>Trypanosoma</scientific_name>\r
5296                     <rank>genus</rank>\r
5297                   </taxonomy>\r
5298                   <clade>\r
5299                     <taxonomy>\r
5300                       <id provider="uniprot">999953</id>\r
5301                       <code>TRYB2</code>\r
5302                       <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>\r
5303                       <rank>strain</rank>\r
5304                     </taxonomy>\r
5305                   </clade>\r
5306                   <clade>\r
5307                     <taxonomy>\r
5308                       <id provider="uniprot">5693</id>\r
5309                       <code>TRYCR</code>\r
5310                       <scientific_name>Trypanosoma cruzi</scientific_name>\r
5311                       <rank>species</rank>\r
5312                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>\r
5313                     </taxonomy>\r
5314                   </clade>\r
5315                 </clade>\r
5316                 <clade>\r
5317                   <taxonomy>\r
5318                     <id provider="uniprot">5664</id>\r
5319                     <code>LEIMA</code>\r
5320                     <scientific_name>Leishmania major</scientific_name>\r
5321                     <rank>species</rank>\r
5322                   </taxonomy>\r
5323                 </clade>\r
5324               </clade>\r
5325               <clade>\r
5326                 <taxonomy>\r
5327                   <id provider="uniprot">5762</id>\r
5328                   <code>NAEGR</code>\r
5329                   <scientific_name>Naegleria gruberi</scientific_name>\r
5330                   <common_name>Amoeba</common_name>\r
5331                   <rank>species</rank>\r
5332                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>\r
5333                 </taxonomy>\r
5334               </clade>\r
5335             </clade>\r
5336             <clade>\r
5337               <name>Metamonada</name>\r
5338               <clade>\r
5339                 <taxonomy>\r
5340                   <id provider="uniprot">184922</id>\r
5341                   <code>GIAIC</code>\r
5342                   <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>\r
5343                   <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>\r
5344                   <synonym>Giardia lamblia</synonym>\r
5345                   <rank>species</rank>\r
5346                 </taxonomy>\r
5347               </clade>\r
5348               <clade>\r
5349                 <taxonomy>\r
5350                   <id provider="uniprot">5722</id>\r
5351                   <code>TRIVA</code>\r
5352                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
5353                   <rank>species</rank>\r
5354                 </taxonomy>\r
5355               </clade>\r
5356             </clade>\r
5357           </clade>\r
5358           <clade>\r
5359             <taxonomy>\r
5360               <id provider="uniprot">554296</id>\r
5361               <scientific_name>Apusozoa</scientific_name>\r
5362             </taxonomy>\r
5363             <reference doi="10.1016/j.protis.2008.06.002">\r
5364               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>\r
5365             </reference>\r
5366             <clade>\r
5367               <taxonomy>\r
5368                 <id provider="uniprot">554453</id>\r
5369                 <scientific_name>Planomonas micra</scientific_name>\r
5370                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>\r
5371                 <synonym>Apusomonadidae sp. micra</synonym>\r
5372                 <rank>species</rank>\r
5373               </taxonomy>\r
5374             </clade>\r
5375             <clade>\r
5376               <taxonomy>\r
5377                 <id provider="uniprot">529818</id>\r
5378                 <code>TTRXX</code>\r
5379                 <scientific_name>Thecamonas trahens</scientific_name>\r
5380                 <authority>Larsen &amp; Patterson 1990</authority>\r
5381                 <synonym>Amastigomonas trahens</synonym>\r
5382                 <rank>species</rank>\r
5383                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>\r
5384               </taxonomy>\r
5385             </clade>\r
5386           </clade>\r
5387         </clade>\r
5388       </clade>\r
5389       <clade>\r
5390         <taxonomy>\r
5391           <id provider="uniprot">2157</id>\r
5392           <scientific_name>Archaea</scientific_name>\r
5393           <rank>superkingdom</rank>\r
5394         </taxonomy>\r
5395         <clade>\r
5396           <name>a_62</name>\r
5397           <clade>\r
5398             <name>a_56</name>\r
5399             <clade>\r
5400               <taxonomy>\r
5401                 <id provider="uniprot">28890</id>\r
5402                 <scientific_name>Euryarchaeota</scientific_name>\r
5403                 <rank>phylum</rank>\r
5404               </taxonomy>\r
5405               <clade>\r
5406                 <name>a_44</name>\r
5407                 <clade>\r
5408                   <name>a_28</name>\r
5409                   <clade>\r
5410                     <name>a_26</name>\r
5411                     <clade>\r
5412                       <taxonomy>\r
5413                         <id provider="uniprot">224756</id>\r
5414                         <scientific_name>Methanomicrobia</scientific_name>\r
5415                         <rank>class</rank>\r
5416                       </taxonomy>\r
5417                       <clade>\r
5418                         <name>a_14</name>\r
5419                         <clade>\r
5420                           <name>a_12</name>\r
5421                           <clade>\r
5422                             <taxonomy>\r
5423                               <id provider="uniprot">2206</id>\r
5424                               <scientific_name>Methanosarcinaceae</scientific_name>\r
5425                               <rank>family</rank>\r
5426                             </taxonomy>\r
5427                             <clade>\r
5428                               <taxonomy>\r
5429                                 <id provider="uniprot">2207</id>\r
5430                                 <scientific_name>Methanosarcina</scientific_name>\r
5431                                 <rank>genus</rank>\r
5432                               </taxonomy>\r
5433                               <clade>\r
5434                                 <name>a_2</name>\r
5435                                 <clade>\r
5436                                   <taxonomy>\r
5437                                     <id provider="uniprot">2214</id>\r
5438                                     <code>METAC</code>\r
5439                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
5440                                     <rank>species</rank>\r
5441                                   </taxonomy>\r
5442                                 </clade>\r
5443                                 <clade>\r
5444                                   <taxonomy>\r
5445                                     <id provider="uniprot">269797</id>\r
5446                                     <code>METBF</code>\r
5447                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
5448                                   </taxonomy>\r
5449                                 </clade>\r
5450                               </clade>\r
5451                               <clade>\r
5452                                 <taxonomy>\r
5453                                   <id provider="uniprot">2209</id>\r
5454                                   <code>METMA</code>\r
5455                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
5456                                   <synonym>Methanosarcina frisia</synonym>\r
5457                                   <rank>species</rank>\r
5458                                 </taxonomy>\r
5459                               </clade>\r
5460                             </clade>\r
5461                             <clade>\r
5462                               <taxonomy>\r
5463                                 <id provider="uniprot">259564</id>\r
5464                                 <code>METBU</code>\r
5465                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
5466                               </taxonomy>\r
5467                             </clade>\r
5468                           </clade>\r
5469                           <clade>\r
5470                             <name>a_11</name>\r
5471                             <taxonomy>\r
5472                               <id provider="uniprot">2191</id>\r
5473                               <scientific_name>Methanomicrobiales</scientific_name>\r
5474                               <rank>order</rank>\r
5475                             </taxonomy>\r
5476                             <clade>\r
5477                               <name>a_9</name>\r
5478                               <clade>\r
5479                                 <taxonomy>\r
5480                                   <id provider="uniprot">456442</id>\r
5481                                   <code>METB6</code>\r
5482                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
5483                                 </taxonomy>\r
5484                               </clade>\r
5485                               <clade>\r
5486                                 <taxonomy>\r
5487                                   <id provider="uniprot">2203</id>\r
5488                                   <code>METHU</code>\r
5489                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
5490                                   <rank>species</rank>\r
5491                                 </taxonomy>\r
5492                               </clade>\r
5493                             </clade>\r
5494                             <clade>\r
5495                               <taxonomy>\r
5496                                 <id provider="uniprot">368407</id>\r
5497                                 <code>METMJ</code>\r
5498                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
5499                               </taxonomy>\r
5500                             </clade>\r
5501                           </clade>\r
5502                         </clade>\r
5503                         <clade>\r
5504                           <taxonomy>\r
5505                             <id provider="uniprot">410358</id>\r
5506                             <code>METLZ</code>\r
5507                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
5508                           </taxonomy>\r
5509                         </clade>\r
5510                       </clade>\r
5511                       <clade>\r
5512                         <taxonomy>\r
5513                           <id provider="uniprot">349307</id>\r
5514                           <code>METTP</code>\r
5515                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
5516                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
5517                         </taxonomy>\r
5518                       </clade>\r
5519                     </clade>\r
5520                     <clade>\r
5521                       <taxonomy>\r
5522                         <id provider="uniprot">2236</id>\r
5523                         <scientific_name>Halobacteriaceae</scientific_name>\r
5524                         <rank>family</rank>\r
5525                       </taxonomy>\r
5526                       <clade>\r
5527                         <name>a_23</name>\r
5528                         <clade>\r
5529                           <name>a_19</name>\r
5530                           <clade>\r
5531                             <taxonomy>\r
5532                               <id provider="uniprot">2238</id>\r
5533                               <code>HALMA</code>\r
5534                               <scientific_name>Haloarcula marismortui</scientific_name>\r
5535                               <synonym>Halobacterium marismortui</synonym>\r
5536                               <rank>species</rank>\r
5537                             </taxonomy>\r
5538                           </clade>\r
5539                           <clade>\r
5540                             <taxonomy>\r
5541                               <id provider="uniprot">2257</id>\r
5542                               <code>NATPH</code>\r
5543                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
5544                               <common_name>Natronobacterium pharaonis</common_name>\r
5545                               <rank>species</rank>\r
5546                             </taxonomy>\r
5547                           </clade>\r
5548                         </clade>\r
5549                         <clade>\r
5550                           <name>a_22</name>\r
5551                           <taxonomy>\r
5552                             <id provider="uniprot">2239</id>\r
5553                             <scientific_name>Halobacterium</scientific_name>\r
5554                             <rank>genus</rank>\r
5555                           </taxonomy>\r
5556                           <clade>\r
5557                             <taxonomy>\r
5558                               <id provider="uniprot">478009</id>\r
5559                               <code>HALS3</code>\r
5560                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
5561                             </taxonomy>\r
5562                           </clade>\r
5563                           <clade>\r
5564                             <taxonomy>\r
5565                               <id provider="uniprot">2243</id>\r
5566                               <code>HALSP</code>\r
5567                               <scientific_name>Halobacterium sp.</scientific_name>\r
5568                               <rank>species</rank>\r
5569                             </taxonomy>\r
5570                           </clade>\r
5571                         </clade>\r
5572                       </clade>\r
5573                       <clade>\r
5574                         <taxonomy>\r
5575                           <id provider="uniprot">362976</id>\r
5576                           <code>HALWD</code>\r
5577                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
5578                         </taxonomy>\r
5579                       </clade>\r
5580                     </clade>\r
5581                   </clade>\r
5582                   <clade>\r
5583                     <taxonomy>\r
5584                       <id provider="uniprot">2234</id>\r
5585                       <code>ARCFU</code>\r
5586                       <scientific_name>Archaeoglobus fulgidus</scientific_name>\r
5587                       <rank>species</rank>\r
5588                     </taxonomy>\r
5589                   </clade>\r
5590                 </clade>\r
5591                 <clade>\r
5592                   <name>a_43</name>\r
5593                   <clade>\r
5594                     <name>a_41</name>\r
5595                     <clade>\r
5596                       <taxonomy>\r
5597                         <id provider="uniprot">2182</id>\r
5598                         <scientific_name>Methanococcales</scientific_name>\r
5599                         <rank>order</rank>\r
5600                       </taxonomy>\r
5601                       <clade>\r
5602                         <name>a_31</name>\r
5603                         <clade>\r
5604                           <taxonomy>\r
5605                             <id provider="uniprot">2190</id>\r
5606                             <code>METJA</code>\r
5607                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
5608                             <synonym>Methanococcus jannaschii</synonym>\r
5609                             <rank>species</rank>\r
5610                           </taxonomy>\r
5611                         </clade>\r
5612                         <clade>\r
5613                           <taxonomy>\r
5614                             <id provider="uniprot">419665</id>\r
5615                             <code>META3</code>\r
5616                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
5617                           </taxonomy>\r
5618                         </clade>\r
5619                       </clade>\r
5620                       <clade>\r
5621                         <name>a_34</name>\r
5622                         <taxonomy>\r
5623                           <id provider="uniprot">2184</id>\r
5624                           <scientific_name>Methanococcus</scientific_name>\r
5625                           <rank>genus</rank>\r
5626                         </taxonomy>\r
5627                         <clade>\r
5628                           <taxonomy>\r
5629                             <id provider="uniprot">39152</id>\r
5630                             <code>METMP</code>\r
5631                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
5632                             <synonym>Methanococcus deltae</synonym>\r
5633                             <rank>species</rank>\r
5634                           </taxonomy>\r
5635                         </clade>\r
5636                         <clade>\r
5637                           <taxonomy>\r
5638                             <id provider="uniprot">406327</id>\r
5639                             <code>METVS</code>\r
5640                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
5641                           </taxonomy>\r
5642                         </clade>\r
5643                       </clade>\r
5644                     </clade>\r
5645                     <clade>\r
5646                       <name>a_40</name>\r
5647                       <taxonomy>\r
5648                         <id provider="uniprot">2159</id>\r
5649                         <scientific_name>Methanobacteriaceae</scientific_name>\r
5650                         <rank>family</rank>\r
5651                       </taxonomy>\r
5652                       <clade>\r
5653                         <name>a_38</name>\r
5654                         <clade>\r
5655                           <taxonomy>\r
5656                             <id provider="uniprot">420247</id>\r
5657                             <code>METS3</code>\r
5658                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
5659                           </taxonomy>\r
5660                         </clade>\r
5661                         <clade>\r
5662                           <taxonomy>\r
5663                             <id provider="uniprot">339860</id>\r
5664                             <code>METST</code>\r
5665                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
5666                           </taxonomy>\r
5667                         </clade>\r
5668                       </clade>\r
5669                       <clade>\r
5670                         <taxonomy>\r
5671                           <id provider="uniprot">187420</id>\r
5672                           <code>METTH</code>\r
5673                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
5674                           <synonym>Methanobacterium thermoautotrophicum</synonym>\r
5675                         </taxonomy>\r
5676                       </clade>\r
5677                     </clade>\r
5678                   </clade>\r
5679                   <clade>\r
5680                     <taxonomy>\r
5681                       <id provider="uniprot">2320</id>\r
5682                       <code>METKA</code>\r
5683                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
5684                       <rank>species</rank>\r
5685                     </taxonomy>\r
5686                   </clade>\r
5687                 </clade>\r
5688               </clade>\r
5689               <clade>\r
5690                 <taxonomy>\r
5691                   <id provider="uniprot">2259</id>\r
5692                   <scientific_name>Thermococcaceae</scientific_name>\r
5693                   <rank>family</rank>\r
5694                 </taxonomy>\r
5695                 <clade>\r
5696                   <name>PYRFU &amp; PYRKO &amp; PYRAB &amp; PYRHO</name>\r
5697                   <clade>\r
5698                     <name>PYRFU &amp; PYRKO</name>\r
5699                     <clade>\r
5700                       <taxonomy>\r
5701                         <id provider="uniprot">2261</id>\r
5702                         <code>PYRFU</code>\r
5703                         <scientific_name>Pyrococcus furiosus</scientific_name>\r
5704                         <rank>species</rank>\r
5705                       </taxonomy>\r
5706                     </clade>\r
5707                     <clade>\r
5708                       <taxonomy>\r
5709                         <id provider="uniprot">69014</id>\r
5710                         <code>PYRKO</code>\r
5711                         <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
5712                         <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>\r
5713                       </taxonomy>\r
5714                     </clade>\r
5715                   </clade>\r
5716                   <clade>\r
5717                     <taxonomy>\r
5718                       <id provider="uniprot">2260</id>\r
5719                       <scientific_name>Pyrococcus</scientific_name>\r
5720                       <rank>genus</rank>\r
5721                     </taxonomy>\r
5722                     <clade>\r
5723                       <taxonomy>\r
5724                         <id provider="uniprot">29292</id>\r
5725                         <code>PYRAB</code>\r
5726                         <scientific_name>Pyrococcus abyssi</scientific_name>\r
5727                         <rank>species</rank>\r
5728                       </taxonomy>\r
5729                     </clade>\r
5730                     <clade>\r
5731                       <taxonomy>\r
5732                         <id provider="uniprot">53953</id>\r
5733                         <code>PYRHO</code>\r
5734                         <scientific_name>Pyrococcus horikoshii</scientific_name>\r
5735                         <rank>species</rank>\r
5736                       </taxonomy>\r
5737                     </clade>\r
5738                   </clade>\r
5739                 </clade>\r
5740                 <clade>\r
5741                   <taxonomy>\r
5742                     <id provider="uniprot">523850</id>\r
5743                     <code>THEON</code>\r
5744                     <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>\r
5745                   </taxonomy>\r
5746                 </clade>\r
5747               </clade>\r
5748             </clade>\r
5749             <clade>\r
5750               <name>a_55</name>\r
5751               <clade>\r
5752                 <taxonomy>\r
5753                   <id provider="uniprot">228908</id>\r
5754                   <code>NANEQ</code>\r
5755                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
5756                 </taxonomy>\r
5757               </clade>\r
5758               <clade>\r
5759                 <taxonomy>\r
5760                   <id provider="uniprot">436308</id>\r
5761                   <code>NITMS</code>\r
5762                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
5763                 </taxonomy>\r
5764               </clade>\r
5765             </clade>\r
5766           </clade>\r
5767           <clade>\r
5768             <taxonomy>\r
5769               <id provider="uniprot">2301</id>\r
5770               <scientific_name>Thermoplasmatales</scientific_name>\r
5771               <rank>order</rank>\r
5772             </taxonomy>\r
5773             <clade>\r
5774               <name>a_59</name>\r
5775               <taxonomy>\r
5776                 <id provider="uniprot">2302</id>\r
5777                 <scientific_name>Thermoplasma</scientific_name>\r
5778                 <rank>genus</rank>\r
5779               </taxonomy>\r
5780               <clade>\r
5781                 <taxonomy>\r
5782                   <id provider="uniprot">273075</id>\r
5783                   <code>THEAC</code>\r
5784                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
5785                 </taxonomy>\r
5786               </clade>\r
5787               <clade>\r
5788                 <taxonomy>\r
5789                   <id provider="uniprot">273116</id>\r
5790                   <code>THEVO</code>\r
5791                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
5792                 </taxonomy>\r
5793               </clade>\r
5794             </clade>\r
5795             <clade>\r
5796               <taxonomy>\r
5797                 <id provider="uniprot">263820</id>\r
5798                 <code>PICTO</code>\r
5799                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
5800               </taxonomy>\r
5801             </clade>\r
5802           </clade>\r
5803         </clade>\r
5804         <clade>\r
5805           <name>a_93</name>\r
5806           <clade>\r
5807             <taxonomy>\r
5808               <id provider="uniprot">183924</id>\r
5809               <scientific_name>Thermoprotei</scientific_name>\r
5810               <rank>class</rank>\r
5811             </taxonomy>\r
5812             <clade>\r
5813               <name>a_83</name>\r
5814               <clade>\r
5815                 <name>a_81</name>\r
5816                 <clade>\r
5817                   <taxonomy>\r
5818                     <id provider="uniprot">2267</id>\r
5819                     <scientific_name>Thermoproteaceae</scientific_name>\r
5820                     <rank>family</rank>\r
5821                   </taxonomy>\r
5822                   <clade>\r
5823                     <name>a_71</name>\r
5824                     <clade>\r
5825                       <name>a_67</name>\r
5826                       <taxonomy>\r
5827                         <id provider="uniprot">2276</id>\r
5828                         <scientific_name>Pyrobaculum</scientific_name>\r
5829                         <rank>genus</rank>\r
5830                       </taxonomy>\r
5831                       <clade>\r
5832                         <name>a_65</name>\r
5833                         <clade>\r
5834                           <taxonomy>\r
5835                             <id provider="uniprot">340102</id>\r
5836                             <code>PYRAR</code>\r
5837                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
5838                           </taxonomy>\r
5839                         </clade>\r
5840                         <clade>\r
5841                           <taxonomy>\r
5842                             <id provider="uniprot">410359</id>\r
5843                             <code>PYRCJ</code>\r
5844                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
5845                           </taxonomy>\r
5846                         </clade>\r
5847                       </clade>\r
5848                       <clade>\r
5849                         <taxonomy>\r
5850                           <id provider="uniprot">13773</id>\r
5851                           <code>PYRAE</code>\r
5852                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
5853                           <rank>species</rank>\r
5854                         </taxonomy>\r
5855                       </clade>\r
5856                     </clade>\r
5857                     <clade>\r
5858                       <name>a_70</name>\r
5859                       <clade>\r
5860                         <taxonomy>\r
5861                           <id provider="uniprot">384616</id>\r
5862                           <code>PYRIL</code>\r
5863                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
5864                         </taxonomy>\r
5865                       </clade>\r
5866                       <clade>\r
5867                         <taxonomy>\r
5868                           <id provider="uniprot">444157</id>\r
5869                           <code>THENV</code>\r
5870                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
5871                           <synonym>Thermoproteus neutrophilus</synonym>\r
5872                         </taxonomy>\r
5873                       </clade>\r
5874                     </clade>\r
5875                   </clade>\r
5876                   <clade>\r
5877                     <taxonomy>\r
5878                       <id provider="uniprot">397948</id>\r
5879                       <code>CALMQ</code>\r
5880                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
5881                     </taxonomy>\r
5882                   </clade>\r
5883                 </clade>\r
5884                 <clade>\r
5885                   <name>a_80</name>\r
5886                   <taxonomy>\r
5887                     <id provider="uniprot">118883</id>\r
5888                     <scientific_name>Sulfolobaceae</scientific_name>\r
5889                     <rank>family</rank>\r
5890                   </taxonomy>\r
5891                   <clade>\r
5892                     <name>a_78</name>\r
5893                     <taxonomy>\r
5894                       <id provider="uniprot">2284</id>\r
5895                       <scientific_name>Sulfolobus</scientific_name>\r
5896                       <rank>genus</rank>\r
5897                     </taxonomy>\r
5898                     <clade>\r
5899                       <name>a_76</name>\r
5900                       <clade>\r
5901                         <taxonomy>\r
5902                           <id provider="uniprot">2285</id>\r
5903                           <code>SULAC</code>\r
5904                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
5905                           <rank>species</rank>\r
5906                         </taxonomy>\r
5907                       </clade>\r
5908                       <clade>\r
5909                         <taxonomy>\r
5910                           <id provider="uniprot">273063</id>\r
5911                           <code>SULTO</code>\r
5912                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
5913                         </taxonomy>\r
5914                       </clade>\r
5915                     </clade>\r
5916                     <clade>\r
5917                       <taxonomy>\r
5918                         <id provider="uniprot">2287</id>\r
5919                         <code>SULSO</code>\r
5920                         <scientific_name>Sulfolobus solfataricus</scientific_name>\r
5921                         <rank>species</rank>\r
5922                       </taxonomy>\r
5923                     </clade>\r
5924                   </clade>\r
5925                   <clade>\r
5926                     <taxonomy>\r
5927                       <id provider="uniprot">399549</id>\r
5928                       <code>METS5</code>\r
5929                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
5930                     </taxonomy>\r
5931                   </clade>\r
5932                 </clade>\r
5933               </clade>\r
5934               <clade>\r
5935                 <taxonomy>\r
5936                   <id provider="uniprot">56636</id>\r
5937                   <code>AERPE</code>\r
5938                   <scientific_name>Aeropyrum pernix</scientific_name>\r
5939                   <rank>species</rank>\r
5940                 </taxonomy>\r
5941               </clade>\r
5942             </clade>\r
5943             <clade>\r
5944               <name>a_90</name>\r
5945               <clade>\r
5946                 <name>a_88</name>\r
5947                 <clade>\r
5948                   <name>a_86</name>\r
5949                   <clade>\r
5950                     <taxonomy>\r
5951                       <id provider="uniprot">399550</id>\r
5952                       <code>STAMF</code>\r
5953                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
5954                     </taxonomy>\r
5955                   </clade>\r
5956                   <clade>\r
5957                     <taxonomy>\r
5958                       <id provider="uniprot">368408</id>\r
5959                       <code>THEPD</code>\r
5960                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
5961                     </taxonomy>\r
5962                   </clade>\r
5963                 </clade>\r
5964                 <clade>\r
5965                   <taxonomy>\r
5966                     <id provider="uniprot">415426</id>\r
5967                     <code>HYPBU</code>\r
5968                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
5969                   </taxonomy>\r
5970                 </clade>\r
5971               </clade>\r
5972               <clade>\r
5973                 <taxonomy>\r
5974                   <id provider="uniprot">453591</id>\r
5975                   <code>IGNH4</code>\r
5976                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
5977                 </taxonomy>\r
5978               </clade>\r
5979             </clade>\r
5980           </clade>\r
5981           <clade>\r
5982             <taxonomy>\r
5983               <id provider="uniprot">374847</id>\r
5984               <code>KORCO</code>\r
5985               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
5986             </taxonomy>\r
5987           </clade>\r
5988         </clade>\r
5989       </clade>\r
5990     </clade>\r
5991     <clade>\r
5992       <taxonomy>\r
5993         <id provider="uniprot">2</id>\r
5994         <scientific_name>Bacteria</scientific_name>\r
5995         <rank>superkingdom</rank>\r
5996       </taxonomy>\r
5997       <clade>\r
5998         <name>b_278</name>\r
5999         <clade>\r
6000           <name>b_268</name>\r
6001           <clade>\r
6002             <name>b_226</name>\r
6003             <clade>\r
6004               <name>b_200</name>\r
6005               <clade>\r
6006                 <name>b_194</name>\r
6007                 <clade>\r
6008                   <name>b_104</name>\r
6009                   <clade>\r
6010                     <name>b_80</name>\r
6011                     <clade>\r
6012                       <taxonomy>\r
6013                         <id provider="uniprot">1224</id>\r
6014                         <scientific_name>Proteobacteria</scientific_name>\r
6015                         <rank>phylum</rank>\r
6016                       </taxonomy>\r
6017                       <clade>\r
6018                         <name>b_52</name>\r
6019                         <clade>\r
6020                           <name>b_44</name>\r
6021                           <clade>\r
6022                             <name>b_30</name>\r
6023                             <clade>\r
6024                               <name>b_24</name>\r
6025                               <taxonomy>\r
6026                                 <id provider="uniprot">1236</id>\r
6027                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
6028                                 <rank>class</rank>\r
6029                               </taxonomy>\r
6030                               <clade>\r
6031                                 <name>b_16</name>\r
6032                                 <clade>\r
6033                                   <taxonomy>\r
6034                                     <id provider="uniprot">543</id>\r
6035                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
6036                                     <rank>family</rank>\r
6037                                   </taxonomy>\r
6038                                   <clade>\r
6039                                     <name>b_8</name>\r
6040                                     <clade>\r
6041                                       <name>b_6</name>\r
6042                                       <clade>\r
6043                                         <name>b_4</name>\r
6044                                         <clade>\r
6045                                           <taxonomy>\r
6046                                             <id provider="uniprot">561</id>\r
6047                                             <scientific_name>Escherichia</scientific_name>\r
6048                                             <rank>genus</rank>\r
6049                                           </taxonomy>\r
6050                                           <clade>\r
6051                                             <taxonomy>\r
6052                                               <id provider="uniprot">83333</id>\r
6053                                               <code>ECOLI</code>\r
6054                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
6055                                             </taxonomy>\r
6056                                           </clade>\r
6057                                           <clade>\r
6058                                             <taxonomy>\r
6059                                               <id provider="uniprot">83334</id>\r
6060                                               <code>ECO57</code>\r
6061                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
6062                                             </taxonomy>\r
6063                                           </clade>\r
6064                                         </clade>\r
6065                                         <clade>\r
6066                                           <taxonomy>\r
6067                                             <id provider="uniprot">623</id>\r
6068                                             <code>SHIFL</code>\r
6069                                             <scientific_name>Shigella flexneri</scientific_name>\r
6070                                             <rank>species</rank>\r
6071                                           </taxonomy>\r
6072                                         </clade>\r
6073                                       </clade>\r
6074                                       <clade>\r
6075                                         <taxonomy>\r
6076                                           <id provider="uniprot">90371</id>\r
6077                                           <code>SALTY</code>\r
6078                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
6079                                         </taxonomy>\r
6080                                       </clade>\r
6081                                     </clade>\r
6082                                     <clade>\r
6083                                       <taxonomy>\r
6084                                         <id provider="uniprot">632</id>\r
6085                                         <code>YERPE</code>\r
6086                                         <scientific_name>Yersinia pestis</scientific_name>\r
6087                                         <rank>species</rank>\r
6088                                       </taxonomy>\r
6089                                     </clade>\r
6090                                   </clade>\r
6091                                   <clade>\r
6092                                     <taxonomy>\r
6093                                       <id provider="uniprot">29488</id>\r
6094                                       <code>PHOLU</code>\r
6095                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
6096                                       <synonym>Xenorhabdus luminescens</synonym>\r
6097                                       <rank>species</rank>\r
6098                                     </taxonomy>\r
6099                                   </clade>\r
6100                                 </clade>\r
6101                                 <clade>\r
6102                                   <name>b_15</name>\r
6103                                   <clade>\r
6104                                     <name>b_13</name>\r
6105                                     <taxonomy>\r
6106                                       <id provider="uniprot">641</id>\r
6107                                       <scientific_name>Vibrionaceae</scientific_name>\r
6108                                       <rank>family</rank>\r
6109                                     </taxonomy>\r
6110                                     <clade>\r
6111                                       <taxonomy>\r
6112                                         <id provider="uniprot">74109</id>\r
6113                                         <code>PHOPR</code>\r
6114                                         <scientific_name>Photobacterium profundum</scientific_name>\r
6115                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
6116                                         <rank>species</rank>\r
6117                                       </taxonomy>\r
6118                                     </clade>\r
6119                                     <clade>\r
6120                                       <taxonomy>\r
6121                                         <id provider="uniprot">666</id>\r
6122                                         <code>VIBCH</code>\r
6123                                         <scientific_name>Vibrio cholerae</scientific_name>\r
6124                                         <rank>species</rank>\r
6125                                       </taxonomy>\r
6126                                     </clade>\r
6127                                   </clade>\r
6128                                   <clade>\r
6129                                     <taxonomy>\r
6130                                       <id provider="uniprot">318161</id>\r
6131                                       <code>SHEDO</code>\r
6132                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
6133                                     </taxonomy>\r
6134                                   </clade>\r
6135                                 </clade>\r
6136                               </clade>\r
6137                               <clade>\r
6138                                 <name>b_23</name>\r
6139                                 <clade>\r
6140                                   <name>b_21</name>\r
6141                                   <taxonomy>\r
6142                                     <id provider="uniprot">286</id>\r
6143                                     <scientific_name>Pseudomonas</scientific_name>\r
6144                                     <rank>genus</rank>\r
6145                                   </taxonomy>\r
6146                                   <clade>\r
6147                                     <name>b_19</name>\r
6148                                     <clade>\r
6149                                       <taxonomy>\r
6150                                         <id provider="uniprot">220664</id>\r
6151                                         <code>PSEF5</code>\r
6152                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
6153                                       </taxonomy>\r
6154                                     </clade>\r
6155                                     <clade>\r
6156                                       <taxonomy>\r
6157                                         <id provider="uniprot">205922</id>\r
6158                                         <code>PSEPF</code>\r
6159                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
6160                                       </taxonomy>\r
6161                                     </clade>\r
6162                                   </clade>\r
6163                                   <clade>\r
6164                                     <taxonomy>\r
6165                                       <id provider="uniprot">287</id>\r
6166                                       <code>PSEAE</code>\r
6167                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
6168                                       <rank>species</rank>\r
6169                                     </taxonomy>\r
6170                                   </clade>\r
6171                                 </clade>\r
6172                                 <clade>\r
6173                                   <taxonomy>\r
6174                                     <id provider="uniprot">290398</id>\r
6175                                     <code>CHRSD</code>\r
6176                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
6177                                   </taxonomy>\r
6178                                 </clade>\r
6179                               </clade>\r
6180                             </clade>\r
6181                             <clade>\r
6182                               <name>b_29</name>\r
6183                               <taxonomy>\r
6184                                 <id provider="uniprot">28216</id>\r
6185                                 <scientific_name>Betaproteobacteria</scientific_name>\r
6186                                 <rank>class</rank>\r
6187                               </taxonomy>\r
6188                               <clade>\r
6189                                 <taxonomy>\r
6190                                   <id provider="uniprot">159087</id>\r
6191                                   <code>DECAR</code>\r
6192                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
6193                                 </taxonomy>\r
6194                               </clade>\r
6195                               <clade>\r
6196                                 <taxonomy>\r
6197                                   <id provider="uniprot">266264</id>\r
6198                                   <code>RALME</code>\r
6199                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
6200                                 </taxonomy>\r
6201                               </clade>\r
6202                             </clade>\r
6203                           </clade>\r
6204                           <clade>\r
6205                             <name>b_43</name>\r
6206                             <clade>\r
6207                               <name>b_41</name>\r
6208                               <clade>\r
6209                                 <name>b_35</name>\r
6210                                 <taxonomy>\r
6211                                   <id provider="uniprot">28216</id>\r
6212                                   <scientific_name>Betaproteobacteria</scientific_name>\r
6213                                   <rank>class</rank>\r
6214                                 </taxonomy>\r
6215                                 <clade>\r
6216                                   <name>b_33</name>\r
6217                                   <taxonomy>\r
6218                                     <id provider="uniprot">206379</id>\r
6219                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
6220                                     <rank>family</rank>\r
6221                                   </taxonomy>\r
6222                                   <clade>\r
6223                                     <taxonomy>\r
6224                                       <id provider="uniprot">915</id>\r
6225                                       <code>NITEU</code>\r
6226                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
6227                                       <rank>species</rank>\r
6228                                     </taxonomy>\r
6229                                   </clade>\r
6230                                   <clade>\r
6231                                     <taxonomy>\r
6232                                       <id provider="uniprot">323848</id>\r
6233                                       <code>NITMU</code>\r
6234                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
6235                                     </taxonomy>\r
6236                                   </clade>\r
6237                                 </clade>\r
6238                                 <clade>\r
6239                                   <taxonomy>\r
6240                                     <id provider="uniprot">36861</id>\r
6241                                     <code>THIDE</code>\r
6242                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
6243                                     <rank>species</rank>\r
6244                                   </taxonomy>\r
6245                                 </clade>\r
6246                               </clade>\r
6247                               <clade>\r
6248                                 <name>b_40</name>\r
6249                                 <taxonomy>\r
6250                                   <id provider="uniprot">135613</id>\r
6251                                   <scientific_name>Chromatiales</scientific_name>\r
6252                                   <rank>order</rank>\r
6253                                 </taxonomy>\r
6254                                 <clade>\r
6255                                   <name>b_38</name>\r
6256                                   <taxonomy>\r
6257                                     <id provider="uniprot">72276</id>\r
6258                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
6259                                     <common_name>purple sulfur bacteria</common_name>\r
6260                                     <rank>family</rank>\r
6261                                   </taxonomy>\r
6262                                   <clade>\r
6263                                     <taxonomy>\r
6264                                       <id provider="uniprot">187272</id>\r
6265                                       <code>ALHEH</code>\r
6266                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
6267                                     </taxonomy>\r
6268                                   </clade>\r
6269                                   <clade>\r
6270                                     <taxonomy>\r
6271                                       <id provider="uniprot">349124</id>\r
6272                                       <code>HALHL</code>\r
6273                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
6274                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
6275                                     </taxonomy>\r
6276                                   </clade>\r
6277                                 </clade>\r
6278                                 <clade>\r
6279                                   <taxonomy>\r
6280                                     <id provider="uniprot">323261</id>\r
6281                                     <code>NITOC</code>\r
6282                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
6283                                   </taxonomy>\r
6284                                 </clade>\r
6285                               </clade>\r
6286                             </clade>\r
6287                             <clade>\r
6288                               <taxonomy>\r
6289                                 <id provider="uniprot">317025</id>\r
6290                                 <code>THICR</code>\r
6291                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
6292                               </taxonomy>\r
6293                             </clade>\r
6294                           </clade>\r
6295                         </clade>\r
6296                         <clade>\r
6297                           <name>b_51</name>\r
6298                           <taxonomy>\r
6299                             <id provider="uniprot">1236</id>\r
6300                             <scientific_name>Gammaproteobacteria</scientific_name>\r
6301                             <rank>class</rank>\r
6302                           </taxonomy>\r
6303                           <clade>\r
6304                             <name>b_47</name>\r
6305                             <clade>\r
6306                               <taxonomy>\r
6307                                 <id provider="uniprot">135577</id>\r
6308                                 <code>IDILO</code>\r
6309                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
6310                                 <rank>species</rank>\r
6311                               </taxonomy>\r
6312                             </clade>\r
6313                             <clade>\r
6314                               <taxonomy>\r
6315                                 <id provider="uniprot">446</id>\r
6316                                 <code>LEGPN</code>\r
6317                                 <scientific_name>Legionella pneumophila</scientific_name>\r
6318                                 <rank>species</rank>\r
6319                               </taxonomy>\r
6320                             </clade>\r
6321                           </clade>\r
6322                           <clade>\r
6323                             <name>b_50</name>\r
6324                             <taxonomy>\r
6325                               <id provider="uniprot">32033</id>\r
6326                               <scientific_name>Xanthomonadaceae</scientific_name>\r
6327                               <rank>family</rank>\r
6328                             </taxonomy>\r
6329                             <clade>\r
6330                               <taxonomy>\r
6331                                 <id provider="uniprot">190486</id>\r
6332                                 <code>XANAC</code>\r
6333                                 <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>\r
6334                                 <synonym>Xanthomonas citri pv. citri str. 306</synonym>\r
6335                               </taxonomy>\r
6336                             </clade>\r
6337                             <clade>\r
6338                               <taxonomy>\r
6339                                 <id provider="uniprot">183190</id>\r
6340                                 <code>XYLFT</code>\r
6341                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
6342                               </taxonomy>\r
6343                             </clade>\r
6344                           </clade>\r
6345                         </clade>\r
6346                       </clade>\r
6347                       <clade>\r
6348                         <name>b_71</name>\r
6349                         <taxonomy>\r
6350                           <id provider="uniprot">28211</id>\r
6351                           <scientific_name>Alphaproteobacteria</scientific_name>\r
6352                           <rank>class</rank>\r
6353                         </taxonomy>\r
6354                         <clade>\r
6355                           <name>b_67</name>\r
6356                           <clade>\r
6357                             <name>b_65</name>\r
6358                             <clade>\r
6359                               <name>b_61</name>\r
6360                               <taxonomy>\r
6361                                 <id provider="uniprot">356</id>\r
6362                                 <scientific_name>Rhizobiales</scientific_name>\r
6363                                 <rank>order</rank>\r
6364                               </taxonomy>\r
6365                               <clade>\r
6366                                 <name>b_57</name>\r
6367                                 <taxonomy>\r
6368                                   <id provider="uniprot">227290</id>\r
6369                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
6370                                 </taxonomy>\r
6371                                 <clade>\r
6372                                   <taxonomy>\r
6373                                     <id provider="uniprot">176299</id>\r
6374                                     <code>AGRT5</code>\r
6375                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
6376                                   </taxonomy>\r
6377                                 </clade>\r
6378                                 <clade>\r
6379                                   <taxonomy>\r
6380                                     <id provider="uniprot">347834</id>\r
6381                                     <code>RHIEC</code>\r
6382                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
6383                                   </taxonomy>\r
6384                                 </clade>\r
6385                               </clade>\r
6386                               <clade>\r
6387                                 <name>b_60</name>\r
6388                                 <taxonomy>\r
6389                                   <id provider="uniprot">41294</id>\r
6390                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
6391                                   <rank>family</rank>\r
6392                                 </taxonomy>\r
6393                                 <clade>\r
6394                                   <taxonomy>\r
6395                                     <id provider="uniprot">375</id>\r
6396                                     <code>BRAJA</code>\r
6397                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
6398                                     <rank>species</rank>\r
6399                                   </taxonomy>\r
6400                                 </clade>\r
6401                                 <clade>\r
6402                                   <taxonomy>\r
6403                                     <id provider="uniprot">395960</id>\r
6404                                     <code>RHOPT</code>\r
6405                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
6406                                   </taxonomy>\r
6407                                 </clade>\r
6408                               </clade>\r
6409                             </clade>\r
6410                             <clade>\r
6411                               <name>b_64</name>\r
6412                               <taxonomy>\r
6413                                 <id provider="uniprot">31989</id>\r
6414                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
6415                                 <rank>family</rank>\r
6416                               </taxonomy>\r
6417                               <clade>\r
6418                                 <taxonomy>\r
6419                                   <id provider="uniprot">349101</id>\r
6420                                   <code>RHOS1</code>\r
6421                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
6422                                 </taxonomy>\r
6423                               </clade>\r
6424                               <clade>\r
6425                                 <taxonomy>\r
6426                                   <id provider="uniprot">375451</id>\r
6427                                   <code>ROSDO</code>\r
6428                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
6429                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
6430                                   <synonym>Roseobacter denitrificans</synonym>\r
6431                                 </taxonomy>\r
6432                               </clade>\r
6433                             </clade>\r
6434                           </clade>\r
6435                           <clade>\r
6436                             <taxonomy>\r
6437                               <id provider="uniprot">155892</id>\r
6438                               <code>CAUCR</code>\r
6439                               <scientific_name>Caulobacter crescentus</scientific_name>\r
6440                               <synonym>Caulobacter vibrioides</synonym>\r
6441                               <rank>species</rank>\r
6442                             </taxonomy>\r
6443                           </clade>\r
6444                         </clade>\r
6445                         <clade>\r
6446                           <name>b_70</name>\r
6447                           <taxonomy>\r
6448                             <id provider="uniprot">204441</id>\r
6449                             <scientific_name>Rhodospirillales</scientific_name>\r
6450                             <rank>order</rank>\r
6451                           </taxonomy>\r
6452                           <clade>\r
6453                             <taxonomy>\r
6454                               <id provider="uniprot">524</id>\r
6455                               <code>ACICY</code>\r
6456                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
6457                               <rank>species</rank>\r
6458                             </taxonomy>\r
6459                           </clade>\r
6460                           <clade>\r
6461                             <taxonomy>\r
6462                               <id provider="uniprot">1085</id>\r
6463                               <code>RHORU</code>\r
6464                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
6465                               <rank>species</rank>\r
6466                             </taxonomy>\r
6467                           </clade>\r
6468                         </clade>\r
6469                       </clade>\r
6470                     </clade>\r
6471                     <clade>\r
6472                       <name>b_79</name>\r
6473                       <clade>\r
6474                         <name>b_77</name>\r
6475                         <taxonomy>\r
6476                           <id provider="uniprot">1224</id>\r
6477                           <scientific_name>Proteobacteria</scientific_name>\r
6478                           <rank>phylum</rank>\r
6479                         </taxonomy>\r
6480                         <clade>\r
6481                           <name>b_75</name>\r
6482                           <taxonomy>\r
6483                             <id provider="uniprot">712</id>\r
6484                             <scientific_name>Pasteurellaceae</scientific_name>\r
6485                             <rank>family</rank>\r
6486                           </taxonomy>\r
6487                           <clade>\r
6488                             <taxonomy>\r
6489                               <id provider="uniprot">727</id>\r
6490                               <code>HAEIN</code>\r
6491                               <scientific_name>Haemophilus influenzae</scientific_name>\r
6492                               <rank>species</rank>\r
6493                             </taxonomy>\r
6494                           </clade>\r
6495                           <clade>\r
6496                             <taxonomy>\r
6497                               <id provider="uniprot">747</id>\r
6498                               <code>PASMU</code>\r
6499                               <scientific_name>Pasteurella multocida</scientific_name>\r
6500                               <rank>species</rank>\r
6501                             </taxonomy>\r
6502                           </clade>\r
6503                         </clade>\r
6504                         <clade>\r
6505                           <taxonomy>\r
6506                             <id provider="uniprot">487</id>\r
6507                             <code>NEIME</code>\r
6508                             <scientific_name>Neisseria meningitidis</scientific_name>\r
6509                             <rank>species</rank>\r
6510                           </taxonomy>\r
6511                         </clade>\r
6512                       </clade>\r
6513                       <clade>\r
6514                         <taxonomy>\r
6515                           <id provider="uniprot">905</id>\r
6516                           <code>ACIFE</code>\r
6517                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
6518                           <rank>species</rank>\r
6519                         </taxonomy>\r
6520                       </clade>\r
6521                     </clade>\r
6522                   </clade>\r
6523                   <clade>\r
6524                     <name>b_103</name>\r
6525                     <clade>\r
6526                       <name>b_91</name>\r
6527                       <taxonomy>\r
6528                         <id provider="uniprot">28221</id>\r
6529                         <scientific_name>Deltaproteobacteria</scientific_name>\r
6530                         <rank>class</rank>\r
6531                       </taxonomy>\r
6532                       <clade>\r
6533                         <name>b_87</name>\r
6534                         <clade>\r
6535                           <name>b_83</name>\r
6536                           <clade>\r
6537                             <taxonomy>\r
6538                               <id provider="uniprot">84980</id>\r
6539                               <code>DESPS</code>\r
6540                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
6541                               <rank>species</rank>\r
6542                             </taxonomy>\r
6543                           </clade>\r
6544                           <clade>\r
6545                             <taxonomy>\r
6546                               <id provider="uniprot">876</id>\r
6547                               <code>DESDE</code>\r
6548                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
6549                               <rank>species</rank>\r
6550                             </taxonomy>\r
6551                           </clade>\r
6552                         </clade>\r
6553                         <clade>\r
6554                           <taxonomy>\r
6555                             <id provider="uniprot">56780</id>\r
6556                             <code>SYNAS</code>\r
6557                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
6558                           </taxonomy>\r
6559                         </clade>\r
6560                       </clade>\r
6561                       <clade>\r
6562                         <name>b_90</name>\r
6563                         <taxonomy>\r
6564                           <id provider="uniprot">28231</id>\r
6565                           <scientific_name>Geobacter</scientific_name>\r
6566                           <rank>genus</rank>\r
6567                         </taxonomy>\r
6568                         <clade>\r
6569                           <taxonomy>\r
6570                             <id provider="uniprot">28232</id>\r
6571                             <code>GEOME</code>\r
6572                             <scientific_name>Geobacter metallireducens</scientific_name>\r
6573                             <rank>species</rank>\r
6574                           </taxonomy>\r
6575                         </clade>\r
6576                         <clade>\r
6577                           <taxonomy>\r
6578                             <id provider="uniprot">35554</id>\r
6579                             <code>GEOSL</code>\r
6580                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
6581                             <rank>species</rank>\r
6582                           </taxonomy>\r
6583                         </clade>\r
6584                       </clade>\r
6585                     </clade>\r
6586                     <clade>\r
6587                       <name>b_102</name>\r
6588                       <clade>\r
6589                         <name>b_98</name>\r
6590                         <clade>\r
6591                           <name>b_94</name>\r
6592                           <taxonomy>\r
6593                             <id provider="uniprot">31</id>\r
6594                             <scientific_name>Myxococcaceae</scientific_name>\r
6595                             <rank>family</rank>\r
6596                           </taxonomy>\r
6597                           <clade>\r
6598                             <taxonomy>\r
6599                               <id provider="uniprot">290397</id>\r
6600                               <code>ANADE</code>\r
6601                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
6602                             </taxonomy>\r
6603                           </clade>\r
6604                           <clade>\r
6605                             <taxonomy>\r
6606                               <id provider="uniprot">34</id>\r
6607                               <code>MYXXA</code>\r
6608                               <scientific_name>Myxococcus xanthus</scientific_name>\r
6609                               <rank>species</rank>\r
6610                             </taxonomy>\r
6611                           </clade>\r
6612                         </clade>\r
6613                         <clade>\r
6614                           <name>b_97</name>\r
6615                           <taxonomy>\r
6616                             <id provider="uniprot">57723</id>\r
6617                             <scientific_name>Acidobacteria</scientific_name>\r
6618                             <rank>phylum</rank>\r
6619                           </taxonomy>\r
6620                           <clade>\r
6621                             <taxonomy>\r
6622                               <id provider="uniprot">204669</id>\r
6623                               <code>ACIBL</code>\r
6624                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>\r
6625                             </taxonomy>\r
6626                           </clade>\r
6627                           <clade>\r
6628                             <taxonomy>\r
6629                               <id provider="uniprot">332163</id>\r
6630                               <code>SOLUS</code>\r
6631                               <scientific_name>Solibacter usitatus</scientific_name>\r
6632                               <rank>species</rank>\r
6633                             </taxonomy>\r
6634                           </clade>\r
6635                         </clade>\r
6636                       </clade>\r
6637                       <clade>\r
6638                         <taxonomy>\r
6639                           <id provider="uniprot">265606</id>\r
6640                           <code>RHOBA</code>\r
6641                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
6642                           <rank>species</rank>\r
6643                         </taxonomy>\r
6644                       </clade>\r
6645                     </clade>\r
6646                   </clade>\r
6647                 </clade>\r
6648                 <clade>\r
6649                   <name>b_193</name>\r
6650                   <clade>\r
6651                     <name>b_163</name>\r
6652                     <clade>\r
6653                       <name>b_133</name>\r
6654                       <clade>\r
6655                         <name>Chloroflexi &amp; Actinobacteria</name>\r
6656                         <clade>\r
6657                           <taxonomy>\r
6658                             <id provider="uniprot">201174</id>\r
6659                             <scientific_name>Actinobacteria</scientific_name>\r
6660                             <rank>phylum</rank>\r
6661                           </taxonomy>\r
6662                           <clade>\r
6663                             <taxonomy>\r
6664                               <id provider="uniprot">2037</id>\r
6665                               <scientific_name>Actinomycetales</scientific_name>\r
6666                               <rank>order</rank>\r
6667                             </taxonomy>\r
6668                             <clade>\r
6669                               <name>b_115</name>\r
6670                               <clade>\r
6671                                 <taxonomy>\r
6672                                   <id provider="uniprot">266940</id>\r
6673                                   <code>KINRD</code>\r
6674                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
6675                                 </taxonomy>\r
6676                               </clade>\r
6677                               <clade>\r
6678                                 <taxonomy>\r
6679                                   <id provider="uniprot">378753</id>\r
6680                                   <code>KOCRD</code>\r
6681                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>\r
6682                                 </taxonomy>\r
6683                               </clade>\r
6684                               <clade>\r
6685                                 <taxonomy>\r
6686                                   <id provider="uniprot">1032480</id>\r
6687                                   <code>MICPN</code>\r
6688                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
6689                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
6690                                   <rank>strain</rank>\r
6691                                 </taxonomy>\r
6692                               </clade>\r
6693                               <clade>\r
6694                                 <taxonomy>\r
6695                                   <id provider="uniprot">1902</id>\r
6696                                   <code>STRCO</code>\r
6697                                   <scientific_name>Streptomyces coelicolor</scientific_name>\r
6698                                   <rank>species</rank>\r
6699                                 </taxonomy>\r
6700                               </clade>\r
6701                               <clade>\r
6702                                 <taxonomy>\r
6703                                   <id provider="uniprot">269800</id>\r
6704                                   <code>THEFY</code>\r
6705                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>\r
6706                                 </taxonomy>\r
6707                               </clade>\r
6708                             </clade>\r
6709                             <clade>\r
6710                               <taxonomy>\r
6711                                 <id provider="uniprot">85007</id>\r
6712                                 <scientific_name>Corynebacterineae</scientific_name>\r
6713                                 <rank>suborder</rank>\r
6714                               </taxonomy>\r
6715                               <clade>\r
6716                                 <taxonomy>\r
6717                                   <id provider="uniprot">1763</id>\r
6718                                   <scientific_name>Mycobacterium</scientific_name>\r
6719                                   <rank>genus</rank>\r
6720                                 </taxonomy>\r
6721                                 <clade>\r
6722                                   <taxonomy>\r
6723                                     <id provider="uniprot">1769</id>\r
6724                                     <code>MYCLE</code>\r
6725                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
6726                                     <rank>species</rank>\r
6727                                   </taxonomy>\r
6728                                 </clade>\r
6729                                 <clade>\r
6730                                   <taxonomy>\r
6731                                     <id provider="uniprot">1773</id>\r
6732                                     <code>MYCTU</code>\r
6733                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
6734                                     <rank>species</rank>\r
6735                                   </taxonomy>\r
6736                                 </clade>\r
6737                               </clade>\r
6738                               <clade>\r
6739                                 <taxonomy>\r
6740                                   <id provider="uniprot">306537</id>\r
6741                                   <code>CORJK</code>\r
6742                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>\r
6743                                 </taxonomy>\r
6744                               </clade>\r
6745                               <clade>\r
6746                                 <taxonomy>\r
6747                                   <id provider="uniprot">632772</id>\r
6748                                   <code>RHOOB</code>\r
6749                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
6750                                   <rank>strain</rank>\r
6751                                 </taxonomy>\r
6752                               </clade>\r
6753                             </clade>\r
6754                           </clade>\r
6755                           <clade>\r
6756                             <taxonomy>\r
6757                               <id provider="uniprot">266117</id>\r
6758                               <code>RUBXD</code>\r
6759                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
6760                             </taxonomy>\r
6761                           </clade>\r
6762                         </clade>\r
6763                         <clade>\r
6764                           <taxonomy>\r
6765                             <id provider="uniprot">200795</id>\r
6766                             <scientific_name>Chloroflexi</scientific_name>\r
6767                             <common_name>GNS bacteria</common_name>\r
6768                             <synonym>Thermomicrobia</synonym>\r
6769                             <rank>phylum</rank>\r
6770                           </taxonomy>\r
6771                           <clade>\r
6772                             <taxonomy>\r
6773                               <id provider="uniprot">32061</id>\r
6774                               <scientific_name>Chloroflexi (class)</scientific_name>\r
6775                               <synonym>Chloroflecales</synonym>\r
6776                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
6777                               <rank>class</rank>\r
6778                             </taxonomy>\r
6779                             <clade>\r
6780                               <taxonomy>\r
6781                                 <id provider="uniprot">1106</id>\r
6782                                 <scientific_name>Chloroflexaceae</scientific_name>\r
6783                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
6784                                 <rank>family</rank>\r
6785                               </taxonomy>\r
6786                               <clade>\r
6787                                 <taxonomy>\r
6788                                   <id provider="uniprot">1108</id>\r
6789                                   <code>CHLAU</code>\r
6790                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
6791                                   <rank>species</rank>\r
6792                                 </taxonomy>\r
6793                               </clade>\r
6794                               <clade>\r
6795                                 <taxonomy>\r
6796                                   <id provider="uniprot">383372</id>\r
6797                                   <code>ROSCS</code>\r
6798                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
6799                                   <rank>species</rank>\r
6800                                 </taxonomy>\r
6801                               </clade>\r
6802                             </clade>\r
6803                             <clade>\r
6804                               <taxonomy>\r
6805                                 <id provider="uniprot">65</id>\r
6806                                 <code>HERAU</code>\r
6807                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
6808                                 <synonym>Herpetosiphon giganteus</synonym>\r
6809                                 <rank>species</rank>\r
6810                               </taxonomy>\r
6811                             </clade>\r
6812                           </clade>\r
6813                           <clade>\r
6814                             <taxonomy>\r
6815                               <id provider="uniprot">479434</id>\r
6816                               <code>SPHTD</code>\r
6817                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
6818                               <rank>strain</rank>\r
6819                             </taxonomy>\r
6820                           </clade>\r
6821                         </clade>\r
6822                       </clade>\r
6823                       <clade>\r
6824                         <name>b_132</name>\r
6825                         <taxonomy>\r
6826                           <id provider="uniprot">188787</id>\r
6827                           <scientific_name>Deinococci</scientific_name>\r
6828                           <rank>class</rank>\r
6829                         </taxonomy>\r
6830                         <clade>\r
6831                           <taxonomy>\r
6832                             <id provider="uniprot">1298</id>\r
6833                             <scientific_name>Deinococcus</scientific_name>\r
6834                             <rank>genus</rank>\r
6835                           </taxonomy>\r
6836                           <clade>\r
6837                             <taxonomy>\r
6838                               <id provider="uniprot">319795</id>\r
6839                               <code>DEIGD</code>\r
6840                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
6841                             </taxonomy>\r
6842                           </clade>\r
6843                           <clade>\r
6844                             <taxonomy>\r
6845                               <id provider="uniprot">1299</id>\r
6846                               <code>DEIRA</code>\r
6847                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
6848                               <rank>species</rank>\r
6849                             </taxonomy>\r
6850                           </clade>\r
6851                         </clade>\r
6852                         <clade>\r
6853                           <taxonomy>\r
6854                             <id provider="uniprot">300852</id>\r
6855                             <code>THET8</code>\r
6856                             <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>\r
6857                             <rank>strain</rank>\r
6858                           </taxonomy>\r
6859                         </clade>\r
6860                       </clade>\r
6861                     </clade>\r
6862                     <clade>\r
6863                       <name>b_162</name>\r
6864                       <taxonomy>\r
6865                         <id provider="uniprot">1117</id>\r
6866                         <scientific_name>Cyanobacteria</scientific_name>\r
6867                         <rank>phylum</rank>\r
6868                       </taxonomy>\r
6869                       <clade>\r
6870                         <name>b_154</name>\r
6871                         <clade>\r
6872                           <name>b_152</name>\r
6873                           <clade>\r
6874                             <name>b_146</name>\r
6875                             <clade>\r
6876                               <name>b_144</name>\r
6877                               <clade>\r
6878                                 <name>b_142</name>\r
6879                                 <clade>\r
6880                                   <name>b_138</name>\r
6881                                   <taxonomy>\r
6882                                     <id provider="uniprot">1162</id>\r
6883                                     <scientific_name>Nostocaceae</scientific_name>\r
6884                                     <rank>family</rank>\r
6885                                   </taxonomy>\r
6886                                   <clade>\r
6887                                     <name>b_136</name>\r
6888                                     <clade>\r
6889                                       <taxonomy>\r
6890                                         <id provider="uniprot">1172</id>\r
6891                                         <code>ANAVA</code>\r
6892                                         <scientific_name>Anabaena variabilis</scientific_name>\r
6893                                         <rank>species</rank>\r
6894                                       </taxonomy>\r
6895                                     </clade>\r
6896                                     <clade>\r
6897                                       <taxonomy>\r
6898                                         <id provider="uniprot">28072</id>\r
6899                                         <code>NOSS7</code>\r
6900                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>\r
6901                                         <rank>species</rank>\r
6902                                       </taxonomy>\r
6903                                     </clade>\r
6904                                   </clade>\r
6905                                   <clade>\r
6906                                     <taxonomy>\r
6907                                       <id provider="uniprot">63737</id>\r
6908                                       <code>NOSP7</code>\r
6909                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
6910                                     </taxonomy>\r
6911                                   </clade>\r
6912                                 </clade>\r
6913                                 <clade>\r
6914                                   <taxonomy>\r
6915                                     <id provider="uniprot">155978</id>\r
6916                                     <code>ACAMR</code>\r
6917                                     <scientific_name>Acaryochloris marina</scientific_name>\r
6918                                     <rank>species</rank>\r
6919                                   </taxonomy>\r
6920                                 </clade>\r
6921                               </clade>\r
6922                               <clade>\r
6923                                 <taxonomy>\r
6924                                   <id provider="uniprot">449447</id>\r
6925                                   <code>MICAN</code>\r
6926                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
6927                                 </taxonomy>\r
6928                               </clade>\r
6929                             </clade>\r
6930                             <clade>\r
6931                               <taxonomy>\r
6932                                 <id provider="uniprot">1206</id>\r
6933                                 <code>TRIER</code>\r
6934                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
6935                                 <rank>species</rank>\r
6936                               </taxonomy>\r
6937                             </clade>\r
6938                           </clade>\r
6939                           <clade>\r
6940                             <taxonomy>\r
6941                               <id provider="uniprot">1118</id>\r
6942                               <scientific_name>Chroococcales</scientific_name>\r
6943                               <rank>order</rank>\r
6944                             </taxonomy>\r
6945                             <clade>\r
6946                               <taxonomy>\r
6947                                 <id provider="uniprot">32046</id>\r
6948                                 <code>SYNEL</code>\r
6949                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
6950                                 <rank>species</rank>\r
6951                               </taxonomy>\r
6952                             </clade>\r
6953                             <clade>\r
6954                               <taxonomy>\r
6955                                 <id provider="uniprot">1148</id>\r
6956                                 <code>SYNY3</code>\r
6957                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>\r
6958                                 <rank>species</rank>\r
6959                               </taxonomy>\r
6960                             </clade>\r
6961                           </clade>\r
6962                         </clade>\r
6963                         <clade>\r
6964                           <taxonomy>\r
6965                             <id provider="uniprot">33072</id>\r
6966                             <code>GLOVI</code>\r
6967                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
6968                             <rank>species</rank>\r
6969                           </taxonomy>\r
6970                         </clade>\r
6971                       </clade>\r
6972                       <clade>\r
6973                         <name>b_161</name>\r
6974                         <clade>\r
6975                           <name>b_159</name>\r
6976                           <taxonomy>\r
6977                             <id provider="uniprot">1218</id>\r
6978                             <scientific_name>Prochlorococcus</scientific_name>\r
6979                             <rank>genus</rank>\r
6980                           </taxonomy>\r
6981                           <clade>\r
6982                             <name>b_157</name>\r
6983                             <clade>\r
6984                               <taxonomy>\r
6985                                 <id provider="uniprot">1219</id>\r
6986                                 <code>PROMA</code>\r
6987                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
6988                                 <rank>species</rank>\r
6989                               </taxonomy>\r
6990                             </clade>\r
6991                             <clade>\r
6992                               <taxonomy>\r
6993                                 <id provider="uniprot">59919</id>\r
6994                                 <code>PROMP</code>\r
6995                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
6996                               </taxonomy>\r
6997                             </clade>\r
6998                           </clade>\r
6999                           <clade>\r
7000                             <taxonomy>\r
7001                               <id provider="uniprot">74547</id>\r
7002                               <code>PROMM</code>\r
7003                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
7004                             </taxonomy>\r
7005                           </clade>\r
7006                         </clade>\r
7007                         <clade>\r
7008                           <taxonomy>\r
7009                             <id provider="uniprot">64471</id>\r
7010                             <code>SYNS3</code>\r
7011                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
7012                             <rank>species</rank>\r
7013                           </taxonomy>\r
7014                         </clade>\r
7015                       </clade>\r
7016                     </clade>\r
7017                   </clade>\r
7018                   <clade>\r
7019                     <name>b_192</name>\r
7020                     <clade>\r
7021                       <name>b_190</name>\r
7022                       <clade>\r
7023                         <name>b_178</name>\r
7024                         <clade>\r
7025                           <name>b_176</name>\r
7026                           <taxonomy>\r
7027                             <id provider="uniprot">191412</id>\r
7028                             <scientific_name>Chlorobiaceae</scientific_name>\r
7029                             <rank>family</rank>\r
7030                           </taxonomy>\r
7031                           <clade>\r
7032                             <name>b_170</name>\r
7033                             <clade>\r
7034                               <name>b_166</name>\r
7035                               <clade>\r
7036                                 <taxonomy>\r
7037                                   <id provider="uniprot">331678</id>\r
7038                                   <code>CHLPB</code>\r
7039                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
7040                                 </taxonomy>\r
7041                               </clade>\r
7042                               <clade>\r
7043                                 <taxonomy>\r
7044                                   <id provider="uniprot">1102</id>\r
7045                                   <code>PROAE</code>\r
7046                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
7047                                   <rank>species</rank>\r
7048                                 </taxonomy>\r
7049                               </clade>\r
7050                             </clade>\r
7051                             <clade>\r
7052                               <name>b_169</name>\r
7053                               <taxonomy>\r
7054                                 <id provider="uniprot">274493</id>\r
7055                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
7056                               </taxonomy>\r
7057                               <clade>\r
7058                                 <taxonomy>\r
7059                                   <id provider="uniprot">1100</id>\r
7060                                   <code>PELLU</code>\r
7061                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
7062                                   <rank>species</rank>\r
7063                                 </taxonomy>\r
7064                               </clade>\r
7065                               <clade>\r
7066                                 <taxonomy>\r
7067                                   <id provider="uniprot">290318</id>\r
7068                                   <code>PROVI</code>\r
7069                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
7070                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
7071                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
7072                                 </taxonomy>\r
7073                               </clade>\r
7074                             </clade>\r
7075                           </clade>\r
7076                           <clade>\r
7077                             <name>b_175</name>\r
7078                             <clade>\r
7079                               <taxonomy>\r
7080                                 <id provider="uniprot">256319</id>\r
7081                                 <scientific_name>Chlorobaculum</scientific_name>\r
7082                                 <rank>genus</rank>\r
7083                               </taxonomy>\r
7084                               <clade>\r
7085                                 <taxonomy>\r
7086                                   <id provider="uniprot">517417</id>\r
7087                                   <code>CHLP8</code>\r
7088                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
7089                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
7090                                 </taxonomy>\r
7091                               </clade>\r
7092                               <clade>\r
7093                                 <taxonomy>\r
7094                                   <id provider="uniprot">1097</id>\r
7095                                   <code>CHLTE</code>\r
7096                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
7097                                   <rank>species</rank>\r
7098                                 </taxonomy>\r
7099                               </clade>\r
7100                             </clade>\r
7101                             <clade>\r
7102                               <taxonomy>\r
7103                                 <id provider="uniprot">340177</id>\r
7104                                 <code>CHLCH</code>\r
7105                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
7106                               </taxonomy>\r
7107                             </clade>\r
7108                           </clade>\r
7109                         </clade>\r
7110                         <clade>\r
7111                           <taxonomy>\r
7112                             <id provider="uniprot">315277</id>\r
7113                             <code>CHLTA</code>\r
7114                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
7115                           </taxonomy>\r
7116                         </clade>\r
7117                       </clade>\r
7118                       <clade>\r
7119                         <name>b_189</name>\r
7120                         <taxonomy>\r
7121                           <id provider="uniprot">976</id>\r
7122                           <scientific_name>Bacteroidetes</scientific_name>\r
7123                           <rank>phylum</rank>\r
7124                         </taxonomy>\r
7125                         <clade>\r
7126                           <name>b_183</name>\r
7127                           <clade>\r
7128                             <name>b_181</name>\r
7129                             <taxonomy>\r
7130                               <id provider="uniprot">49546</id>\r
7131                               <scientific_name>Flavobacteriaceae</scientific_name>\r
7132                               <rank>family</rank>\r
7133                             </taxonomy>\r
7134                             <clade>\r
7135                               <taxonomy>\r
7136                                 <id provider="uniprot">986</id>\r
7137                                 <code>FLAJO</code>\r
7138                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
7139                                 <synonym>Cytophaga johnsonae</synonym>\r
7140                                 <rank>species</rank>\r
7141                               </taxonomy>\r
7142                             </clade>\r
7143                             <clade>\r
7144                               <taxonomy>\r
7145                                 <id provider="uniprot">411154</id>\r
7146                                 <code>GRAFK</code>\r
7147                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
7148                               </taxonomy>\r
7149                             </clade>\r
7150                           </clade>\r
7151                           <clade>\r
7152                             <taxonomy>\r
7153                               <id provider="uniprot">269798</id>\r
7154                               <code>CYTH3</code>\r
7155                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
7156                             </taxonomy>\r
7157                           </clade>\r
7158                         </clade>\r
7159                         <clade>\r
7160                           <name>b_188</name>\r
7161                           <taxonomy>\r
7162                             <id provider="uniprot">171549</id>\r
7163                             <scientific_name>Bacteroidales</scientific_name>\r
7164                             <rank>order</rank>\r
7165                           </taxonomy>\r
7166                           <clade>\r
7167                             <name>b_186</name>\r
7168                             <taxonomy>\r
7169                               <id provider="uniprot">816</id>\r
7170                               <scientific_name>Bacteroides</scientific_name>\r
7171                               <rank>genus</rank>\r
7172                             </taxonomy>\r
7173                             <clade>\r
7174                               <taxonomy>\r
7175                                 <id provider="uniprot">817</id>\r
7176                                 <code>BACFR</code>\r
7177                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
7178                                 <rank>species</rank>\r
7179                               </taxonomy>\r
7180                             </clade>\r
7181                             <clade>\r
7182                               <taxonomy>\r
7183                                 <id provider="uniprot">818</id>\r
7184                                 <code>BACTN</code>\r
7185                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
7186                                 <rank>species</rank>\r
7187                               </taxonomy>\r
7188                             </clade>\r
7189                           </clade>\r
7190                           <clade>\r
7191                             <taxonomy>\r
7192                               <id provider="uniprot">837</id>\r
7193                               <code>PORGI</code>\r
7194                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
7195                               <synonym>Bacteroides gingivalis</synonym>\r
7196                               <rank>species</rank>\r
7197                             </taxonomy>\r
7198                           </clade>\r
7199                         </clade>\r
7200                       </clade>\r
7201                     </clade>\r
7202                     <clade>\r
7203                       <taxonomy>\r
7204                         <id provider="uniprot">309807</id>\r
7205                         <code>SALRD</code>\r
7206                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
7207                       </taxonomy>\r
7208                     </clade>\r
7209                   </clade>\r
7210                 </clade>\r
7211               </clade>\r
7212               <clade>\r
7213                 <name>b_199</name>\r
7214                 <clade>\r
7215                   <name>b_197</name>\r
7216                   <taxonomy>\r
7217                     <scientific_name>Verrucomicrobia</scientific_name>\r
7218                   </taxonomy>\r
7219                   <clade>\r
7220                     <taxonomy>\r
7221                       <id provider="uniprot">349741</id>\r
7222                       <code>AKKM8</code>\r
7223                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
7224                     </taxonomy>\r
7225                   </clade>\r
7226                   <clade>\r
7227                     <taxonomy>\r
7228                       <id provider="uniprot">481448</id>\r
7229                       <code>METI4</code>\r
7230                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
7231                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
7232                     </taxonomy>\r
7233                   </clade>\r
7234                 </clade>\r
7235                 <clade>\r
7236                   <taxonomy>\r
7237                     <id provider="uniprot">44275</id>\r
7238                     <code>LEPIC</code>\r
7239                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
7240                   </taxonomy>\r
7241                 </clade>\r
7242               </clade>\r
7243             </clade>\r
7244             <clade>\r
7245               <name>b_225</name>\r
7246               <clade>\r
7247                 <name>b_219</name>\r
7248                 <taxonomy>\r
7249                   <id provider="uniprot">1239</id>\r
7250                   <scientific_name>Firmicutes</scientific_name>\r
7251                   <rank>phylum</rank>\r
7252                 </taxonomy>\r
7253                 <clade>\r
7254                   <name>b_213</name>\r
7255                   <clade>\r
7256                     <taxonomy>\r
7257                       <id provider="uniprot">1385</id>\r
7258                       <scientific_name>Bacillales</scientific_name>\r
7259                       <rank>order</rank>\r
7260                     </taxonomy>\r
7261                     <clade>\r
7262                       <taxonomy>\r
7263                         <id provider="uniprot">186817</id>\r
7264                         <scientific_name>Bacillaceae</scientific_name>\r
7265                         <rank>family</rank>\r
7266                       </taxonomy>\r
7267                       <clade>\r
7268                         <taxonomy>\r
7269                           <id provider="uniprot">1386</id>\r
7270                           <scientific_name>Bacillus</scientific_name>\r
7271                           <rank>genus</rank>\r
7272                         </taxonomy>\r
7273                         <clade>\r
7274                           <taxonomy>\r
7275                             <id provider="uniprot">86661</id>\r
7276                             <scientific_name>Bacillus cereus group</scientific_name>\r
7277                           </taxonomy>\r
7278                           <clade>\r
7279                             <taxonomy>\r
7280                               <id provider="uniprot">1392</id>\r
7281                               <code>BACAN</code>\r
7282                               <scientific_name>Bacillus anthracis</scientific_name>\r
7283                               <rank>species</rank>\r
7284                             </taxonomy>\r
7285                           </clade>\r
7286                           <clade>\r
7287                             <taxonomy>\r
7288                               <id provider="uniprot">572264</id>\r
7289                               <code>BACC3</code>\r
7290                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
7291                               <rank>strain</rank>\r
7292                             </taxonomy>\r
7293                           </clade>\r
7294                         </clade>\r
7295                         <clade>\r
7296                           <taxonomy>\r
7297                             <id provider="uniprot">224308</id>\r
7298                             <code>BACSU</code>\r
7299                             <scientific_name>Bacillus subtilis (strain 168)</scientific_name>\r
7300                             <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>\r
7301                           </taxonomy>\r
7302                         </clade>\r
7303                       </clade>\r
7304                       <clade>\r
7305                         <name>b_206</name>\r
7306                         <clade>\r
7307                           <taxonomy>\r
7308                             <id provider="uniprot">86665</id>\r
7309                             <code>BACHD</code>\r
7310                             <scientific_name>Bacillus halodurans</scientific_name>\r
7311                             <rank>species</rank>\r
7312                           </taxonomy>\r
7313                         </clade>\r
7314                         <clade>\r
7315                           <taxonomy>\r
7316                             <id provider="uniprot">1462</id>\r
7317                             <code>GEOKA</code>\r
7318                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
7319                             <rank>species</rank>\r
7320                           </taxonomy>\r
7321                         </clade>\r
7322                       </clade>\r
7323                     </clade>\r
7324                     <clade>\r
7325                       <name>b_210</name>\r
7326                       <clade>\r
7327                         <taxonomy>\r
7328                           <id provider="uniprot">1639</id>\r
7329                           <code>LISMO</code>\r
7330                           <scientific_name>Listeria monocytogenes</scientific_name>\r
7331                           <rank>species</rank>\r
7332                         </taxonomy>\r
7333                       </clade>\r
7334                       <clade>\r
7335                         <taxonomy>\r
7336                           <id provider="uniprot">1280</id>\r
7337                           <code>STAAU</code>\r
7338                           <scientific_name>Staphylococcus aureus</scientific_name>\r
7339                           <rank>species</rank>\r
7340                         </taxonomy>\r
7341                       </clade>\r
7342                     </clade>\r
7343                   </clade>\r
7344                   <clade>\r
7345                     <taxonomy>\r
7346                       <id provider="uniprot">195103</id>\r
7347                       <code>CLOP1</code>\r
7348                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
7349                     </taxonomy>\r
7350                   </clade>\r
7351                 </clade>\r
7352                 <clade>\r
7353                   <name>Clostridia</name>\r
7354                   <taxonomy>\r
7355                     <id provider="uniprot">186801</id>\r
7356                     <scientific_name>Clostridia</scientific_name>\r
7357                     <rank>class</rank>\r
7358                   </taxonomy>\r
7359                   <clade>\r
7360                     <name>b_218</name>\r
7361                     <clade>\r
7362                       <name>b_216</name>\r
7363                       <taxonomy>\r
7364                         <id provider="uniprot">186814</id>\r
7365                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
7366                         <rank>family</rank>\r
7367                       </taxonomy>\r
7368                       <clade>\r
7369                         <taxonomy>\r
7370                           <id provider="uniprot">246194</id>\r
7371                           <code>CARHZ</code>\r
7372                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
7373                         </taxonomy>\r
7374                       </clade>\r
7375                       <clade>\r
7376                         <taxonomy>\r
7377                           <id provider="uniprot">119072</id>\r
7378                           <code>THETN</code>\r
7379                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
7380                           <rank>species</rank>\r
7381                         </taxonomy>\r
7382                       </clade>\r
7383                     </clade>\r
7384                     <clade>\r
7385                       <taxonomy>\r
7386                         <id provider="uniprot">49338</id>\r
7387                         <code>DESHA</code>\r
7388                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
7389                         <synonym>Desulfitobacterium frappieri</synonym>\r
7390                         <rank>species</rank>\r
7391                       </taxonomy>\r
7392                     </clade>\r
7393                   </clade>\r
7394                   <clade>\r
7395                     <taxonomy>\r
7396                       <id provider="uniprot">515619</id>\r
7397                       <code>EUBR3</code>\r
7398                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
7399                     </taxonomy>\r
7400                   </clade>\r
7401                 </clade>\r
7402               </clade>\r
7403               <clade>\r
7404                 <name>b_224</name>\r
7405                 <taxonomy>\r
7406                   <id provider="uniprot">188709</id>\r
7407                   <scientific_name>Thermotogaceae</scientific_name>\r
7408                   <rank>family</rank>\r
7409                 </taxonomy>\r
7410                 <clade>\r
7411                   <name>b_222</name>\r
7412                   <clade>\r
7413                     <taxonomy>\r
7414                       <id provider="uniprot">381764</id>\r
7415                       <code>FERNB</code>\r
7416                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
7417                     </taxonomy>\r
7418                   </clade>\r
7419                   <clade>\r
7420                     <taxonomy>\r
7421                       <id provider="uniprot">416591</id>\r
7422                       <code>THELT</code>\r
7423                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
7424                     </taxonomy>\r
7425                   </clade>\r
7426                 </clade>\r
7427                 <clade>\r
7428                   <taxonomy>\r
7429                     <id provider="uniprot">2336</id>\r
7430                     <code>THEMA</code>\r
7431                     <scientific_name>Thermotoga maritima</scientific_name>\r
7432                     <rank>species</rank>\r
7433                   </taxonomy>\r
7434                 </clade>\r
7435               </clade>\r
7436             </clade>\r
7437           </clade>\r
7438           <clade>\r
7439             <name>b_267</name>\r
7440             <clade>\r
7441               <name>b_263</name>\r
7442               <clade>\r
7443                 <name>b_251</name>\r
7444                 <clade>\r
7445                   <name>b_249</name>\r
7446                   <clade>\r
7447                     <name>b_245</name>\r
7448                     <clade>\r
7449                       <name>b_237</name>\r
7450                       <clade>\r
7451                         <name>b_233</name>\r
7452                         <taxonomy>\r
7453                           <id provider="uniprot">31969</id>\r
7454                           <scientific_name>Mollicutes</scientific_name>\r
7455                           <rank>class</rank>\r
7456                         </taxonomy>\r
7457                         <clade>\r
7458                           <name>b_231</name>\r
7459                           <clade>\r
7460                             <name>b_229</name>\r
7461                             <taxonomy>\r
7462                               <scientific_name>Mycoplasma</scientific_name>\r
7463                             </taxonomy>\r
7464                             <clade>\r
7465                               <taxonomy>\r
7466                                 <id provider="uniprot">2097</id>\r
7467                                 <code>MYCGE</code>\r
7468                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
7469                                 <rank>species</rank>\r
7470                               </taxonomy>\r
7471                             </clade>\r
7472                             <clade>\r
7473                               <taxonomy>\r
7474                                 <id provider="uniprot">2104</id>\r
7475                                 <code>MYCPN</code>\r
7476                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
7477                                 <rank>species</rank>\r
7478                               </taxonomy>\r
7479                             </clade>\r
7480                           </clade>\r
7481                           <clade>\r
7482                             <taxonomy>\r
7483                               <id provider="uniprot">2151</id>\r
7484                               <code>MESFL</code>\r
7485                               <scientific_name>Mesoplasma florum</scientific_name>\r
7486                               <synonym>Acholeplasma florum</synonym>\r
7487                               <rank>species</rank>\r
7488                             </taxonomy>\r
7489                           </clade>\r
7490                         </clade>\r
7491                         <clade>\r
7492                           <taxonomy>\r
7493                             <id provider="uniprot">134821</id>\r
7494                             <code>UREPA</code>\r
7495                             <scientific_name>Ureaplasma parvum</scientific_name>\r
7496                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
7497                             <rank>species</rank>\r
7498                           </taxonomy>\r
7499                         </clade>\r
7500                       </clade>\r
7501                       <clade>\r
7502                         <name>b_236</name>\r
7503                         <taxonomy>\r
7504                           <id provider="uniprot">137</id>\r
7505                           <scientific_name>Spirochaetaceae</scientific_name>\r
7506                           <rank>family</rank>\r
7507                         </taxonomy>\r
7508                         <clade>\r
7509                           <taxonomy>\r
7510                             <id provider="uniprot">139</id>\r
7511                             <code>BORBU</code>\r
7512                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
7513                             <common_name>Lyme disease spirochete</common_name>\r
7514                             <rank>species</rank>\r
7515                           </taxonomy>\r
7516                         </clade>\r
7517                         <clade>\r
7518                           <taxonomy>\r
7519                             <id provider="uniprot">160</id>\r
7520                             <code>TREPA</code>\r
7521                             <scientific_name>Treponema pallidum</scientific_name>\r
7522                             <rank>species</rank>\r
7523                           </taxonomy>\r
7524                         </clade>\r
7525                       </clade>\r
7526                     </clade>\r
7527                     <clade>\r
7528                       <name>b_244</name>\r
7529                       <clade>\r
7530                         <name>b_242</name>\r
7531                         <taxonomy>\r
7532                           <id provider="uniprot">1113537</id>\r
7533                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
7534                         </taxonomy>\r
7535                         <clade>\r
7536                           <name>b_240</name>\r
7537                           <clade>\r
7538                             <taxonomy>\r
7539                               <id provider="uniprot">83558</id>\r
7540                               <code>CHLPN</code>\r
7541                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
7542                               <synonym>Chlamydophila pneumoniae</synonym>\r
7543                               <rank>species</rank>\r
7544                             </taxonomy>\r
7545                           </clade>\r
7546                           <clade>\r
7547                             <taxonomy>\r
7548                               <id provider="uniprot">264202</id>\r
7549                               <code>CHLFF</code>\r
7550                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
7551                             </taxonomy>\r
7552                           </clade>\r
7553                         </clade>\r
7554                         <clade>\r
7555                           <taxonomy>\r
7556                             <id provider="uniprot">83560</id>\r
7557                             <code>CHLMU</code>\r
7558                             <scientific_name>Chlamydia muridarum</scientific_name>\r
7559                             <rank>species</rank>\r
7560                           </taxonomy>\r
7561                         </clade>\r
7562                       </clade>\r
7563                       <clade>\r
7564                         <taxonomy>\r
7565                           <id provider="uniprot">785</id>\r
7566                           <code>RICTY</code>\r
7567                           <scientific_name>Rickettsia typhi</scientific_name>\r
7568                           <rank>species</rank>\r
7569                         </taxonomy>\r
7570                       </clade>\r
7571                     </clade>\r
7572                   </clade>\r
7573                   <clade>\r
7574                     <taxonomy>\r
7575                       <id provider="uniprot">28211</id>\r
7576                       <scientific_name>Alphaproteobacteria</scientific_name>\r
7577                       <rank>class</rank>\r
7578                     </taxonomy>\r
7579                     <clade>\r
7580                       <taxonomy>\r
7581                         <id provider="uniprot">38323</id>\r
7582                         <code>BARHE</code>\r
7583                         <scientific_name>Bartonella henselae</scientific_name>\r
7584                         <synonym>Rochalimaea henselae</synonym>\r
7585                         <rank>species</rank>\r
7586                       </taxonomy>\r
7587                     </clade>\r
7588                     <clade>\r
7589                       <taxonomy>\r
7590                         <id provider="uniprot">198252</id>\r
7591                         <code>PELUB</code>\r
7592                         <scientific_name>Pelagibacter ubique</scientific_name>\r
7593                         <rank>species</rank>\r
7594                       </taxonomy>\r
7595                     </clade>\r
7596                     <clade>\r
7597                       <taxonomy>\r
7598                         <id provider="uniprot">780</id>\r
7599                         <scientific_name>Rickettsia</scientific_name>\r
7600                         <rank>genus</rank>\r
7601                       </taxonomy>\r
7602                       <clade>\r
7603                         <taxonomy>\r
7604                           <id provider="uniprot">391896</id>\r
7605                           <code>RICB8</code>\r
7606                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
7607                         </taxonomy>\r
7608                       </clade>\r
7609                       <clade>\r
7610                         <taxonomy>\r
7611                           <id provider="uniprot">452659</id>\r
7612                           <code>RICRO</code>\r
7613                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
7614                           <rank>strain</rank>\r
7615                         </taxonomy>\r
7616                       </clade>\r
7617                     </clade>\r
7618                   </clade>\r
7619                 </clade>\r
7620                 <clade>\r
7621                   <taxonomy>\r
7622                     <id provider="uniprot">263</id>\r
7623                     <code>FRATU</code>\r
7624                     <scientific_name>Francisella tularensis</scientific_name>\r
7625                     <rank>species</rank>\r
7626                   </taxonomy>\r
7627                 </clade>\r
7628               </clade>\r
7629               <clade>\r
7630                 <name>b_262</name>\r
7631                 <clade>\r
7632                   <name>b_260</name>\r
7633                   <clade>\r
7634                     <name>b_258</name>\r
7635                     <taxonomy>\r
7636                       <id provider="uniprot">186826</id>\r
7637                       <scientific_name>Lactobacillales</scientific_name>\r
7638                       <rank>order</rank>\r
7639                     </taxonomy>\r
7640                     <clade>\r
7641                       <name>b_256</name>\r
7642                       <taxonomy>\r
7643                         <id provider="uniprot">1300</id>\r
7644                         <scientific_name>Streptococcaceae</scientific_name>\r
7645                         <rank>family</rank>\r
7646                       </taxonomy>\r
7647                       <clade>\r
7648                         <name>b_254</name>\r
7649                         <taxonomy>\r
7650                           <id provider="uniprot">1301</id>\r
7651                           <scientific_name>Streptococcus</scientific_name>\r
7652                           <rank>genus</rank>\r
7653                         </taxonomy>\r
7654                         <clade>\r
7655                           <taxonomy>\r
7656                             <id provider="uniprot">1313</id>\r
7657                             <code>STRPN</code>\r
7658                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
7659                             <rank>species</rank>\r
7660                           </taxonomy>\r
7661                         </clade>\r
7662                         <clade>\r
7663                           <taxonomy>\r
7664                             <id provider="uniprot">1314</id>\r
7665                             <code>STRPY</code>\r
7666                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
7667                             <rank>species</rank>\r
7668                           </taxonomy>\r
7669                         </clade>\r
7670                       </clade>\r
7671                       <clade>\r
7672                         <taxonomy>\r
7673                           <id provider="uniprot">1360</id>\r
7674                           <code>LACLA</code>\r
7675                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
7676                           <synonym>Streptococcus lactis</synonym>\r
7677                           <rank>subspecies</rank>\r
7678                         </taxonomy>\r
7679                       </clade>\r
7680                     </clade>\r
7681                     <clade>\r
7682                       <taxonomy>\r
7683                         <id provider="uniprot">1579</id>\r
7684                         <code>LACAC</code>\r
7685                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
7686                         <rank>species</rank>\r
7687                       </taxonomy>\r
7688                     </clade>\r
7689                   </clade>\r
7690                   <clade>\r
7691                     <taxonomy>\r
7692                       <id provider="uniprot">216816</id>\r
7693                       <code>BIFLO</code>\r
7694                       <scientific_name>Bifidobacterium longum</scientific_name>\r
7695                       <rank>species</rank>\r
7696                     </taxonomy>\r
7697                   </clade>\r
7698                 </clade>\r
7699                 <clade>\r
7700                   <taxonomy>\r
7701                     <id provider="uniprot">851</id>\r
7702                     <code>FUSNU</code>\r
7703                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
7704                     <rank>species</rank>\r
7705                   </taxonomy>\r
7706                 </clade>\r
7707               </clade>\r
7708             </clade>\r
7709             <clade>\r
7710               <name>b_266</name>\r
7711               <taxonomy>\r
7712                 <id provider="uniprot">61434</id>\r
7713                 <scientific_name>Dehalococcoides</scientific_name>\r
7714                 <rank>genus</rank>\r
7715               </taxonomy>\r
7716               <clade>\r
7717                 <taxonomy>\r
7718                   <id provider="uniprot">243164</id>\r
7719                   <code>DEHE1</code>\r
7720                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
7721                 </taxonomy>\r
7722               </clade>\r
7723               <clade>\r
7724                 <taxonomy>\r
7725                   <id provider="uniprot">216389</id>\r
7726                   <code>DEHSB</code>\r
7727                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
7728                   <rank>species</rank>\r
7729                 </taxonomy>\r
7730               </clade>\r
7731             </clade>\r
7732           </clade>\r
7733         </clade>\r
7734         <clade>\r
7735           <name>b_277</name>\r
7736           <taxonomy>\r
7737             <id provider="uniprot">29547</id>\r
7738             <scientific_name>Epsilonproteobacteria</scientific_name>\r
7739             <rank>class</rank>\r
7740           </taxonomy>\r
7741           <clade>\r
7742             <name>b_273</name>\r
7743             <clade>\r
7744               <taxonomy>\r
7745                 <id provider="uniprot">387092</id>\r
7746                 <code>NITSB</code>\r
7747                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
7748                 <rank>species</rank>\r
7749               </taxonomy>\r
7750             </clade>\r
7751             <clade>\r
7752               <taxonomy>\r
7753                 <id provider="uniprot">387093</id>\r
7754                 <code>SULNB</code>\r
7755                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
7756                 <rank>species</rank>\r
7757               </taxonomy>\r
7758             </clade>\r
7759           </clade>\r
7760           <clade>\r
7761             <name>b_276</name>\r
7762             <taxonomy>\r
7763               <id provider="uniprot">213849</id>\r
7764               <scientific_name>Campylobacterales</scientific_name>\r
7765               <rank>order</rank>\r
7766             </taxonomy>\r
7767             <clade>\r
7768               <taxonomy>\r
7769                 <id provider="uniprot">197</id>\r
7770                 <code>CAMJE</code>\r
7771                 <scientific_name>Campylobacter jejuni</scientific_name>\r
7772                 <rank>species</rank>\r
7773               </taxonomy>\r
7774             </clade>\r
7775             <clade>\r
7776               <taxonomy>\r
7777                 <id provider="uniprot">357544</id>\r
7778                 <code>HELPH</code>\r
7779                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
7780               </taxonomy>\r
7781             </clade>\r
7782           </clade>\r
7783         </clade>\r
7784       </clade>\r
7785       <clade>\r
7786         <taxonomy>\r
7787           <id provider="uniprot">63363</id>\r
7788           <code>AQUAE</code>\r
7789           <scientific_name>Aquifex aeolicus</scientific_name>\r
7790           <rank>species</rank>\r
7791         </taxonomy>\r
7792       </clade>\r
7793     </clade>\r
7794   </clade>\r
7795 </phylogeny>\r
7796 </phyloxml>