forester/data/tol_153.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <taxonomy>
   6       <id provider="uniprot">131567</id>
   7       <scientific_name>cellular organisms</scientific_name>
   8     </taxonomy>
   9     <clade>
  10       <taxonomy>
  11         <scientific_name>Neomura</scientific_name>
  12       </taxonomy>
  13       <clade>
  14         <taxonomy>
  15           <id provider="uniprot">2759</id>
  16           <scientific_name>Eukaryota</scientific_name>
  17           <rank>superkingdom</rank>
  18         </taxonomy>
  19         <clade>
  20           <name>Unikonta</name>
  21           <clade>
  22             <taxonomy>
  23               <id provider="uniprot">33154</id>
  24               <scientific_name>Opisthokonta</scientific_name>
  25               <common_name>Fungi/Metazoa group</common_name>
  26             </taxonomy>
  27             <clade>
  28               <taxonomy>
  29                 <scientific_name>Holozoa</scientific_name>
  30               </taxonomy>
  31               <clade>
  32                 <name>Choanoflagellatea &amp; Metazoa</name>
  33                 <clade>
  34                   <taxonomy>
  35                     <id provider="uniprot">33208</id>
  36                     <scientific_name>Metazoa</scientific_name>
  37                     <rank>kingdom</rank>
  38                   </taxonomy>
  39                   <clade>
  40                     <taxonomy>
  41                       <id provider="uniprot">6072</id>
  42                       <scientific_name>Eumetazoa</scientific_name>
  43                     </taxonomy>
  44                     <reference doi="10.1038/nature06614">
  45                     </reference>
  46                     <clade>
  47                       <name>Bilateria &amp; Cnidaria</name>
  48                       <clade>
  49                         <taxonomy>
  50                           <id provider="uniprot">33213</id>
  51                           <scientific_name>Bilateria</scientific_name>
  52                         </taxonomy>
  53                         <clade>
  54                           <taxonomy>
  55                             <id provider="uniprot">33511</id>
  56                             <scientific_name>Deuterostomia</scientific_name>
  57                           </taxonomy>
  58                           <reference doi="10.1038/nature04336">
  59                           </reference>
  60                           <clade>
  61                             <taxonomy>
  62                               <id provider="uniprot">7711</id>
  63                               <scientific_name>Chordata</scientific_name>
  64                               <rank>phylum</rank>
  65                             </taxonomy>
  66                             <clade>
  67                               <name>Urochordata &amp; Vertebrata</name>
  68                               <clade>
  69                                 <taxonomy>
  70                                   <id provider="uniprot">7742</id>
  71                                   <scientific_name>Vertebrata</scientific_name>
  72                                 </taxonomy>
  73                                 <clade>
  74                                   <taxonomy>
  75                                     <id provider="uniprot">7776</id>
  76                                     <scientific_name>Gnathostomata</scientific_name>
  77                                     <common_name>jawed vertebrates</common_name>
  78                                     <rank>superclass</rank>
  79                                   </taxonomy>
  80                                   <clade>
  81                                     <taxonomy>
  82                                       <id provider="uniprot">117571</id>
  83                                       <scientific_name>Euteleostomi</scientific_name>
  84                                       <common_name>bony vertebrates</common_name>
  85                                     </taxonomy>
  86                                     <clade>
  87                                       <taxonomy>
  88                                         <id provider="uniprot">8287</id>
  89                                         <scientific_name>Sarcopterygii</scientific_name>
  90                                         <common_name>lobe-finned fish</common_name>
  91                                       </taxonomy>
  92                                       <clade>
  93                                         <taxonomy>
  94                                           <id provider="uniprot">32523</id>
  95                                           <scientific_name>Tetrapoda</scientific_name>
  96                                         </taxonomy>
  97                                         <clade>
  98                                           <taxonomy>
  99                                             <id provider="uniprot">32524</id>
 100                                             <scientific_name>Amniota</scientific_name>
 101                                           </taxonomy>
 102                                           <clade>
 103                                             <taxonomy>
 104                                               <id provider="uniprot">40674</id>
 105                                               <scientific_name>Mammalia</scientific_name>
 106                                               <rank>class</rank>
 107                                             </taxonomy>
 108                                             <clade>
 109                                               <name>Theria</name>
 110                                               <clade>
 111                                                 <taxonomy>
 112                                                   <id provider="uniprot">9347</id>
 113                                                   <scientific_name>Eutheria</scientific_name>
 114                                                   <common_name>Placental mammals</common_name>
 115                                                 </taxonomy>
 116                                                 <reference doi="10.1002/bies.200900053">
 117                                                   <desc>The new framework for understanding placental mammal evolution</desc>
 118                                                 </reference>
 119                                                 <clade>
 120                                                   <taxonomy>
 121                                                     <scientific_name>Boreoeutheria</scientific_name>
 122                                                     <synonym>Boreotheria</synonym>
 123                                                   </taxonomy>
 124                                                   <clade>
 125                                                     <taxonomy>
 126                                                       <id provider="uniprot">314146</id>
 127                                                       <scientific_name>Euarchontoglires</scientific_name>
 128                                                       <rank>superorder</rank>
 129                                                     </taxonomy>
 130                                                     <clade>
 131                                                       <taxonomy>
 132                                                         <scientific_name>Euarchonta</scientific_name>
 133                                                       </taxonomy>
 134                                                       <clade>
 135                                                         <taxonomy>
 136                                                           <id provider="uniprot">9443</id>
 137                                                           <scientific_name>Primates</scientific_name>
 138                                                           <rank>order</rank>
 139                                                         </taxonomy>
 140                                                         <clade>
 141                                                           <taxonomy>
 142                                                             <id provider="uniprot">376913</id>
 143                                                             <scientific_name>Haplorrhini</scientific_name>
 144                                                             <rank>suborder</rank>
 145                                                           </taxonomy>
 146                                                           <clade>
 147                                                             <taxonomy>
 148                                                               <id provider="uniprot">314293</id>
 149                                                               <scientific_name>Simiiformes</scientific_name>
 150                                                               <rank>infraorder</rank>
 151                                                             </taxonomy>
 152                                                             <clade>
 153                                                               <taxonomy>
 154                                                                 <id provider="uniprot">9526</id>
 155                                                                 <scientific_name>Catarrhini</scientific_name>
 156                                                               </taxonomy>
 157                                                               <clade>
 158                                                                 <taxonomy>
 159                                                                   <id provider="uniprot">314295</id>
 160                                                                   <scientific_name>Hominoidea</scientific_name>
 161                                                                   <common_name>Apes</common_name>
 162                                                                   <rank>superfamily</rank>
 163                                                                 </taxonomy>
 164                                                                 <clade>
 165                                                                   <taxonomy>
 166                                                                     <id provider="uniprot">9604</id>
 167                                                                     <scientific_name>Hominidae</scientific_name>
 168                                                                     <common_name>Great apes</common_name>
 169                                                                     <rank>family</rank>
 170                                                                   </taxonomy>
 171                                                                   <clade>
 172                                                                     <taxonomy>
 173                                                                       <id provider="uniprot">207598</id>
 174                                                                       <scientific_name>Homininae</scientific_name>
 175                                                                       <rank>subfamily</rank>
 176                                                                     </taxonomy>
 177                                                                     <clade>
 178                                                                       <taxonomy>
 179                                                                         <scientific_name>Hominini</scientific_name>
 180                                                                         <rank>tribe</rank>
 181                                                                       </taxonomy>
 182                                                                       <clade>
 183                                                                         <taxonomy>
 184                                                                           <id provider="uniprot">9606</id>
 185                                                                           <code>HUMAN</code>
 186                                                                           <scientific_name>Homo sapiens</scientific_name>
 187                                                                           <common_name>Human</common_name>
 188                                                                           <rank>species</rank>
 189                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 190                                                                         </taxonomy>
 191                                                                       </clade>
 192                                                                       <clade>
 193                                                                         <taxonomy>
 194                                                                           <id provider="uniprot">9598</id>
 195                                                                           <code>PANTR</code>
 196                                                                           <scientific_name>Pan troglodytes</scientific_name>
 197                                                                           <common_name>Chimpanzee</common_name>
 198                                                                           <rank>species</rank>
 199                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 200                                                                         </taxonomy>
 201                                                                       </clade>
 202                                                                     </clade>
 203                                                                     <clade>
 204                                                                       <taxonomy>
 205                                                                         <id provider="uniprot">9595</id>
 206                                                                         <code>GORGO</code>
 207                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 208                                                                         <common_name>Western lowland gorilla</common_name>
 209                                                                         <rank>subspecies</rank>
 210                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 211                                                                       </taxonomy>
 212                                                                     </clade>
 213                                                                   </clade>
 214                                                                   <clade>
 215                                                                     <taxonomy>
 216                                                                       <id provider="uniprot">9601</id>
 217                                                                       <code>PONAB</code>
 218                                                                       <scientific_name>Pongo abelii</scientific_name>
 219                                                                       <common_name>Sumatran orangutan</common_name>
 220                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 221                                                                       <rank>species</rank>
 222                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>
 223                                                                     </taxonomy>
 224                                                                   </clade>
 225                                                                 </clade>
 226                                                                 <clade>
 227                                                                   <taxonomy>
 228                                                                     <id provider="uniprot">61853</id>
 229                                                                     <code>NOMLE</code>
 230                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 231                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 232                                                                     <synonym>Hylobates leucogenys</synonym>
 233                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 234                                                                     <rank>species</rank>
 235                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 236                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 237                                                                   </taxonomy>
 238                                                                 </clade>
 239                                                               </clade>
 240                                                               <clade>
 241                                                                 <taxonomy>
 242                                                                   <id provider="uniprot">9528</id>
 243                                                                   <scientific_name>Cercopithecinae</scientific_name>
 244                                                                   <rank>subfamily</rank>
 245                                                                 </taxonomy>
 246                                                                 <clade>
 247                                                                   <taxonomy>
 248                                                                     <id provider="uniprot">9544</id>
 249                                                                     <code>MACMU</code>
 250                                                                     <scientific_name>Macaca mulatta</scientific_name>
 251                                                                     <common_name>Rhesus macaque</common_name>
 252                                                                     <rank>species</rank>
 253                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>
 254                                                                   </taxonomy>
 255                                                                 </clade>
 256                                                                 <clade>
 257                                                                   <taxonomy>
 258                                                                     <id provider="uniprot">9557</id>
 259                                                                     <code>PAPHA</code>
 260                                                                     <scientific_name>Papio hamadryas</scientific_name>
 261                                                                     <common_name>Hamadryas baboon</common_name>
 262                                                                     <rank>species</rank>
 263                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 264                                                                   </taxonomy>
 265                                                                 </clade>
 266                                                               </clade>
 267                                                             </clade>
 268                                                             <clade>
 269                                                               <taxonomy>
 270                                                                 <id provider="uniprot">9483</id>
 271                                                                 <code>CALJA</code>
 272                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 273                                                                 <common_name>White-tufted-ear marmoset</common_name>
 274                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 275                                                                 <rank>species</rank>
 276                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 277                                                               </taxonomy>
 278                                                             </clade>
 279                                                           </clade>
 280                                                           <clade>
 281                                                             <taxonomy>
 282                                                               <id provider="uniprot">9478</id>
 283                                                               <code>TARSY</code>
 284                                                               <scientific_name>Tarsius syrichta</scientific_name>
 285                                                               <common_name>Philippine tarsier</common_name>
 286                                                               <rank>species</rank>
 287                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 288                                                             </taxonomy>
 289                                                           </clade>
 290                                                         </clade>
 291                                                         <clade>
 292                                                           <taxonomy>
 293                                                             <id provider="uniprot">376911</id>
 294                                                             <scientific_name>Strepsirrhini</scientific_name>
 295                                                             <rank>suborder</rank>
 296                                                           </taxonomy>
 297                                                           <clade>
 298                                                             <taxonomy>
 299                                                               <id provider="uniprot">30608</id>
 300                                                               <code>MICMU</code>
 301                                                               <scientific_name>Microcebus murinus</scientific_name>
 302                                                               <common_name>Lesser mouse lemur</common_name>
 303                                                               <synonym>Gray Mouse Lemur</synonym>
 304                                                               <rank>species</rank>
 305                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 306                                                             </taxonomy>
 307                                                           </clade>
 308                                                           <clade>
 309                                                             <taxonomy>
 310                                                               <id provider="uniprot">30611</id>
 311                                                               <code>OTOGA</code>
 312                                                               <scientific_name>Otolemur garnettii</scientific_name>
 313                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 314                                                               <synonym>Galago garnetti</synonym>
 315                                                               <synonym>Small-eared galago</synonym>
 316                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 317                                                               <rank>species</rank>
 318                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 319                                                             </taxonomy>
 320                                                           </clade>
 321                                                         </clade>
 322                                                       </clade>
 323                                                       <clade>
 324                                                         <taxonomy>
 325                                                           <id provider="uniprot">37347</id>
 326                                                           <code>TUPBE</code>
 327                                                           <scientific_name>Tupaia belangeri</scientific_name>
 328                                                           <common_name>Common tree shrew</common_name>
 329                                                           <synonym>Tupaia glis belangeri</synonym>
 330                                                           <rank>species</rank>
 331                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 332                                                         </taxonomy>
 333                                                       </clade>
 334                                                     </clade>
 335                                                     <clade>
 336                                                       <taxonomy>
 337                                                         <id provider="uniprot">314147</id>
 338                                                         <scientific_name>Glires</scientific_name>
 339                                                         <common_name>Rodents and rabbits</common_name>
 340                                                       </taxonomy>
 341                                                       <clade>
 342                                                         <taxonomy>
 343                                                           <id provider="uniprot">9989</id>
 344                                                           <scientific_name>Rodentia</scientific_name>
 345                                                           <rank>order</rank>
 346                                                         </taxonomy>
 347                                                         <clade>
 348                                                           <name>Hystricomorpha &amp; Sciurognathi</name>
 349                                                           <reference doi="10.1186/1471-2148-9-71">
 350                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 351                                                           </reference>
 352                                                           <clade>
 353                                                             <taxonomy>
 354                                                               <id provider="uniprot">33553</id>
 355                                                               <scientific_name>Sciurognathi</scientific_name>
 356                                                               <rank>suborder</rank>
 357                                                             </taxonomy>
 358                                                             <clade>
 359                                                               <taxonomy>
 360                                                                 <id provider="uniprot">337687</id>
 361                                                                 <scientific_name>Muroidea</scientific_name>
 362                                                               </taxonomy>
 363                                                               <clade>
 364                                                                 <taxonomy>
 365                                                                   <id provider="uniprot">39107</id>
 366                                                                   <scientific_name>Murinae</scientific_name>
 367                                                                   <rank>subfamily</rank>
 368                                                                 </taxonomy>
 369                                                                 <clade>
 370                                                                   <taxonomy>
 371                                                                     <id provider="uniprot">10090</id>
 372                                                                     <code>MOUSE</code>
 373                                                                     <scientific_name>Mus musculus</scientific_name>
 374                                                                     <common_name>Mouse</common_name>
 375                                                                     <rank>species</rank>
 376                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>
 377                                                                   </taxonomy>
 378                                                                 </clade>
 379                                                                 <clade>
 380                                                                   <taxonomy>
 381                                                                     <id provider="uniprot">10116</id>
 382                                                                     <code>RAT</code>
 383                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 384                                                                     <common_name>Rat</common_name>
 385                                                                     <rank>species</rank>
 386                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 387                                                                   </taxonomy>
 388                                                                 </clade>
 389                                                               </clade>
 390                                                               <clade>
 391                                                                 <taxonomy>
 392                                                                   <id provider="uniprot">10036</id>
 393                                                                   <code>MESAU</code>
 394                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 395                                                                   <common_name>Golden hamster</common_name>
 396                                                                   <rank>species</rank>
 397                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG</uri>
 398                                                                 </taxonomy>
 399                                                               </clade>
 400                                                             </clade>
 401                                                             <clade>
 402                                                               <taxonomy>
 403                                                                 <id provider="uniprot">10020</id>
 404                                                                 <code>DIPOR</code>
 405                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 406                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 407                                                                 <rank>species</rank>
 408                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 409                                                               </taxonomy>
 410                                                             </clade>
 411                                                           </clade>
 412                                                           <clade>
 413                                                             <taxonomy>
 414                                                               <id provider="uniprot">33550</id>
 415                                                               <scientific_name>Hystricognathi</scientific_name>
 416                                                               <rank>suborder</rank>
 417                                                             </taxonomy>
 418                                                             <clade>
 419                                                               <taxonomy>
 420                                                                 <id provider="uniprot">10141</id>
 421                                                                 <code>CAVPO</code>
 422                                                                 <scientific_name>Cavia porcellus</scientific_name>
 423                                                                 <common_name>Guinea pig</common_name>
 424                                                                 <rank>species</rank>
 425                                                                 <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>
 426                                                               </taxonomy>
 427                                                             </clade>
 428                                                             <clade>
 429                                                               <taxonomy>
 430                                                                 <id provider="uniprot">10181</id>
 431                                                                 <code>HETGA</code>
 432                                                                 <scientific_name>Heterocephalus glaber</scientific_name>
 433                                                                 <common_name>Naked mole rat</common_name>
 434                                                                 <rank>species</rank>
 435                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg</uri>
 436                                                               </taxonomy>
 437                                                             </clade>
 438                                                           </clade>
 439                                                         </clade>
 440                                                         <clade>
 441                                                           <taxonomy>
 442                                                             <id provider="uniprot">43179</id>
 443                                                             <code>SPETR</code>
 444                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 445                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 446                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 447                                                             <rank>species</rank>
 448                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 449                                                           </taxonomy>
 450                                                         </clade>
 451                                                       </clade>
 452                                                       <clade>
 453                                                         <taxonomy>
 454                                                           <id provider="uniprot">9975</id>
 455                                                           <scientific_name>Lagomorpha</scientific_name>
 456                                                           <rank>order</rank>
 457                                                         </taxonomy>
 458                                                         <clade>
 459                                                           <taxonomy>
 460                                                             <id provider="uniprot">9978</id>
 461                                                             <code>OCHPR</code>
 462                                                             <scientific_name>Ochotona princeps</scientific_name>
 463                                                             <common_name>Southern American pika</common_name>
 464                                                             <rank>species</rank>
 465                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 466                                                           </taxonomy>
 467                                                         </clade>
 468                                                         <clade>
 469                                                           <taxonomy>
 470                                                             <id provider="uniprot">9986</id>
 471                                                             <code>RABIT</code>
 472                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 473                                                             <common_name>Rabbit</common_name>
 474                                                             <rank>species</rank>
 475                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>
 476                                                           </taxonomy>
 477                                                         </clade>
 478                                                       </clade>
 479                                                     </clade>
 480                                                   </clade>
 481                                                   <clade>
 482                                                     <taxonomy>
 483                                                       <id provider="uniprot">314145</id>
 484                                                       <scientific_name>Laurasiatheria</scientific_name>
 485                                                       <rank>superorder</rank>
 486                                                     </taxonomy>
 487                                                     <clade>
 488                                                       <taxonomy>
 489                                                         <scientific_name>Scrotifera</scientific_name>
 490                                                       </taxonomy>
 491                                                       <clade>
 492                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 493                                                         <clade>
 494                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 495                                                           <clade>
 496                                                             <taxonomy>
 497                                                               <id provider="uniprot">91561</id>
 498                                                               <scientific_name>Cetartiodactyla</scientific_name>
 499                                                               <common_name>Even-toed ungulates</common_name>
 500                                                             </taxonomy>
 501                                                             <clade>
 502                                                               <name>Cetruminantia &amp; Suina</name>
 503                                                               <clade>
 504                                                                 <taxonomy>
 505                                                                   <scientific_name>Cetruminantia</scientific_name>
 506                                                                 </taxonomy>
 507                                                                 <clade>
 508                                                                   <taxonomy>
 509                                                                     <id provider="uniprot">9895</id>
 510                                                                     <scientific_name>Bovidae</scientific_name>
 511                                                                     <rank>family</rank>
 512                                                                   </taxonomy>
 513                                                                   <clade>
 514                                                                     <taxonomy>
 515                                                                       <id provider="uniprot">9913</id>
 516                                                                       <code>BOVIN</code>
 517                                                                       <scientific_name>Bos taurus</scientific_name>
 518                                                                       <common_name>Bovine</common_name>
 519                                                                       <synonym>Bos bovis</synonym>
 520                                                                       <rank>species</rank>
 521                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>
 522                                                                     </taxonomy>
 523                                                                   </clade>
 524                                                                   <clade>
 525                                                                     <taxonomy>
 526                                                                       <id provider="uniprot">9940</id>
 527                                                                       <code>SHEEP</code>
 528                                                                       <scientific_name>Ovis aries</scientific_name>
 529                                                                       <common_name>Sheep</common_name>
 530                                                                       <rank>species</rank>
 531                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 532                                                                     </taxonomy>
 533                                                                   </clade>
 534                                                                 </clade>
 535                                                                 <clade>
 536                                                                   <taxonomy>
 537                                                                     <id provider="uniprot">9721</id>
 538                                                                     <scientific_name>Cetacea</scientific_name>
 539                                                                     <common_name>Whales</common_name>
 540                                                                     <rank>order</rank>
 541                                                                   </taxonomy>
 542                                                                   <clade>
 543                                                                     <taxonomy>
 544                                                                       <id provider="uniprot">9771</id>
 545                                                                       <code>BALMU</code>
 546                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 547                                                                       <common_name>Blue whale</common_name>
 548                                                                       <rank>species</rank>
 549                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 550                                                                     </taxonomy>
 551                                                                   </clade>
 552                                                                   <clade>
 553                                                                     <taxonomy>
 554                                                                       <id provider="uniprot">9739</id>
 555                                                                       <code>TURTR</code>
 556                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 557                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 558                                                                       <synonym>Delphinus truncatus</synonym>
 559                                                                       <rank>species</rank>
 560                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 561                                                                     </taxonomy>
 562                                                                   </clade>
 563                                                                 </clade>
 564                                                               </clade>
 565                                                               <clade>
 566                                                                 <taxonomy>
 567                                                                   <id provider="uniprot">9823</id>
 568                                                                   <code>PIG</code>
 569                                                                   <scientific_name>Sus scrofa</scientific_name>
 570                                                                   <common_name>Pig</common_name>
 571                                                                   <rank>species</rank>
 572                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 573                                                                 </taxonomy>
 574                                                               </clade>
 575                                                             </clade>
 576                                                             <clade>
 577                                                               <taxonomy>
 578                                                                 <id provider="uniprot">30538</id>
 579                                                                 <code>LAMPA</code>
 580                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 581                                                                 <common_name>Alpaca</common_name>
 582                                                                 <synonym>Lama pacos</synonym>
 583                                                                 <rank>species</rank>
 584                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>
 585                                                               </taxonomy>
 586                                                             </clade>
 587                                                           </clade>
 588                                                           <clade>
 589                                                             <taxonomy>
 590                                                               <id provider="uniprot">9796</id>
 591                                                               <code>HORSE</code>
 592                                                               <scientific_name>Equus caballus</scientific_name>
 593                                                               <common_name>Horse</common_name>
 594                                                               <rank>species</rank>
 595                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 596                                                             </taxonomy>
 597                                                           </clade>
 598                                                         </clade>
 599                                                         <clade>
 600                                                           <taxonomy>
 601                                                             <id provider="uniprot">9397</id>
 602                                                             <scientific_name>Chiroptera</scientific_name>
 603                                                             <common_name>Bats</common_name>
 604                                                             <rank>order</rank>
 605                                                           </taxonomy>
 606                                                           <clade>
 607                                                             <taxonomy>
 608                                                               <id provider="uniprot">59463</id>
 609                                                               <code>MYOLU</code>
 610                                                               <scientific_name>Myotis lucifugus</scientific_name>
 611                                                               <common_name>Little brown bat</common_name>
 612                                                               <rank>species</rank>
 613                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 614                                                             </taxonomy>
 615                                                           </clade>
 616                                                           <clade>
 617                                                             <taxonomy>
 618                                                               <id provider="uniprot">132908</id>
 619                                                               <code>PTEVA</code>
 620                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 621                                                               <common_name>Large flying fox</common_name>
 622                                                               <rank>species</rank>
 623                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 624                                                             </taxonomy>
 625                                                           </clade>
 626                                                         </clade>
 627                                                       </clade>
 628                                                       <clade>
 629                                                         <name>Carnivora</name>
 630                                                         <taxonomy>
 631                                                           <id provider="uniprot">33554</id>
 632                                                           <scientific_name>Carnivora</scientific_name>
 633                                                           <rank>order</rank>
 634                                                         </taxonomy>
 635                                                         <clade>
 636                                                           <taxonomy>
 637                                                             <id provider="uniprot">379584</id>
 638                                                             <scientific_name>Caniformia</scientific_name>
 639                                                             <rank>suborder</rank>
 640                                                           </taxonomy>
 641                                                           <clade>
 642                                                             <taxonomy>
 643                                                               <id provider="uniprot">9646</id>
 644                                                               <code>AILME</code>
 645                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 646                                                               <common_name>Giant panda</common_name>
 647                                                               <rank>species</rank>
 648                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 649                                                             </taxonomy>
 650                                                           </clade>
 651                                                           <clade>
 652                                                             <taxonomy>
 653                                                               <id provider="uniprot">9615</id>
 654                                                               <code>CANFA</code>
 655                                                               <scientific_name>Canis familiaris</scientific_name>
 656                                                               <common_name>Dog</common_name>
 657                                                               <synonym>Canis lupus familiaris</synonym>
 658                                                               <rank>subspecies</rank>
 659                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 660                                                             </taxonomy>
 661                                                           </clade>
 662                                                         </clade>
 663                                                         <clade>
 664                                                           <taxonomy>
 665                                                             <id provider="uniprot">9685</id>
 666                                                             <code>FELCA</code>
 667                                                             <scientific_name>Felis catus</scientific_name>
 668                                                             <common_name>Cat</common_name>
 669                                                             <synonym>Felis silvestris catus</synonym>
 670                                                             <rank>species</rank>
 671                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 672                                                           </taxonomy>
 673                                                         </clade>
 674                                                       </clade>
 675                                                     </clade>
 676                                                     <clade>
 677                                                       <taxonomy>
 678                                                         <id provider="uniprot">9362</id>
 679                                                         <scientific_name>Insectivora</scientific_name>
 680                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 681                                                         <rank>order</rank>
 682                                                       </taxonomy>
 683                                                       <clade>
 684                                                         <taxonomy>
 685                                                           <id provider="uniprot">9365</id>
 686                                                           <code>ERIEU</code>
 687                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 688                                                           <common_name>Western European hedgehog</common_name>
 689                                                           <rank>species</rank>
 690                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 691                                                         </taxonomy>
 692                                                       </clade>
 693                                                       <clade>
 694                                                         <taxonomy>
 695                                                           <id provider="uniprot">42254</id>
 696                                                           <code>SORAR</code>
 697                                                           <scientific_name>Sorex araneus</scientific_name>
 698                                                           <common_name>Eurasian common shrew</common_name>
 699                                                           <synonym>European shrew</synonym>
 700                                                           <rank>species</rank>
 701                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 702                                                         </taxonomy>
 703                                                       </clade>
 704                                                     </clade>
 705                                                   </clade>
 706                                                 </clade>
 707                                                 <clade>
 708                                                   <taxonomy>
 709                                                     <scientific_name>Atlantogenata</scientific_name>
 710                                                   </taxonomy>
 711                                                   <clade>
 712                                                     <taxonomy>
 713                                                       <id provider="uniprot">311790</id>
 714                                                       <scientific_name>Afrotheria</scientific_name>
 715                                                       <rank>superorder</rank>
 716                                                     </taxonomy>
 717                                                     <clade>
 718                                                       <taxonomy>
 719                                                         <scientific_name>Paenungulata</scientific_name>
 720                                                       </taxonomy>
 721                                                       <clade>
 722                                                         <taxonomy>
 723                                                           <id provider="uniprot">9785</id>
 724                                                           <code>LOXAF</code>
 725                                                           <scientific_name>Loxodonta africana</scientific_name>
 726                                                           <common_name>African savanna elephant</common_name>
 727                                                           <rank>species</rank>
 728                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 729                                                         </taxonomy>
 730                                                       </clade>
 731                                                       <clade>
 732                                                         <taxonomy>
 733                                                           <id provider="uniprot">9813</id>
 734                                                           <code>PROCA</code>
 735                                                           <scientific_name>Procavia capensis</scientific_name>
 736                                                           <common_name>Cape hyrax</common_name>
 737                                                           <synonym>Rock dassie</synonym>
 738                                                           <rank>species</rank>
 739                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 740                                                         </taxonomy>
 741                                                       </clade>
 742                                                     </clade>
 743                                                     <clade>
 744                                                       <taxonomy>
 745                                                         <id provider="uniprot">9371</id>
 746                                                         <code>ECHTE</code>
 747                                                         <scientific_name>Echinops telfairi</scientific_name>
 748                                                         <common_name>Lesser hedgehog tenrec</common_name>
 749                                                         <rank>species</rank>
 750                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 751                                                       </taxonomy>
 752                                                     </clade>
 753                                                   </clade>
 754                                                   <clade>
 755                                                     <taxonomy>
 756                                                       <id provider="uniprot">9348</id>
 757                                                       <scientific_name>Xenarthra</scientific_name>
 758                                                       <synonym>Edentata</synonym>
 759                                                       <rank>superorder</rank>
 760                                                     </taxonomy>
 761                                                     <clade>
 762                                                       <taxonomy>
 763                                                         <id provider="uniprot">9358</id>
 764                                                         <code>CHOHO</code>
 765                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 766                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 767                                                         <rank>species</rank>
 768                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 769                                                       </taxonomy>
 770                                                     </clade>
 771                                                     <clade>
 772                                                       <taxonomy>
 773                                                         <id provider="uniprot">9361</id>
 774                                                         <code>DASNO</code>
 775                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 776                                                         <common_name>Nine-banded armadillo</common_name>
 777                                                         <rank>species</rank>
 778                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 779                                                       </taxonomy>
 780                                                     </clade>
 781                                                   </clade>
 782                                                 </clade>
 783                                               </clade>
 784                                               <clade>
 785                                                 <taxonomy>
 786                                                   <id provider="uniprot">9263</id>
 787                                                   <scientific_name>Metatheria</scientific_name>
 788                                                   <common_name>Marsupials</common_name>
 789                                                 </taxonomy>
 790                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 791                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 792                                                 </reference>
 793                                                 <reference>
 794                                                 </reference>
 795                                                 <clade>
 796                                                   <taxonomy>
 797                                                     <scientific_name>Eometatheria</scientific_name>
 798                                                   </taxonomy>
 799                                                   <clade>
 800                                                     <taxonomy>
 801                                                       <id provider="uniprot">9315</id>
 802                                                       <code>MACEU</code>
 803                                                       <scientific_name>Macropus eugenii</scientific_name>
 804                                                       <common_name>Tammar wallaby</common_name>
 805                                                       <rank>species</rank>
 806                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 807                                                     </taxonomy>
 808                                                   </clade>
 809                                                   <clade>
 810                                                     <taxonomy>
 811                                                       <id provider="uniprot">9305</id>
 812                                                       <code>SARHA</code>
 813                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 814                                                       <common_name>Tasmanian devil</common_name>
 815                                                       <synonym>Sarcophilus laniarius</synonym>
 816                                                       <rank>species</rank>
 817                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 818                                                     </taxonomy>
 819                                                   </clade>
 820                                                 </clade>
 821                                                 <clade>
 822                                                   <taxonomy>
 823                                                     <id provider="uniprot">13616</id>
 824                                                     <code>MONDO</code>
 825                                                     <scientific_name>Monodelphis domestica</scientific_name>
 826                                                     <common_name>Short-tailed gray opossum</common_name>
 827                                                     <rank>species</rank>
 828                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 829                                                   </taxonomy>
 830                                                 </clade>
 831                                               </clade>
 832                                             </clade>
 833                                             <clade>
 834                                               <taxonomy>
 835                                                 <id provider="uniprot">9258</id>
 836                                                 <code>ORNAN</code>
 837                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 838                                                 <common_name>Duckbill platypus</common_name>
 839                                                 <rank>species</rank>
 840                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>
 841                                               </taxonomy>
 842                                             </clade>
 843                                           </clade>
 844                                           <clade>
 845                                             <taxonomy>
 846                                               <id provider="uniprot">8457</id>
 847                                               <scientific_name>Sauropsida</scientific_name>
 848                                             </taxonomy>
 849                                             <clade>
 850                                               <name>Archosauria &amp; Testudines</name>
 851                                               <reference doi="10.1038/ng.2615">
 852                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>
 853                                               </reference>
 854                                               <reference>
 855                                               </reference>
 856                                               <reference>
 857                                               </reference>
 858                                               <clade>
 859                                                 <taxonomy>
 860                                                   <id provider="uniprot">8492</id>
 861                                                   <scientific_name>Archosauria</scientific_name>
 862                                                 </taxonomy>
 863                                                 <clade>
 864                                                   <name>Neognathae</name>
 865                                                   <taxonomy>
 866                                                     <id provider="uniprot">8825</id>
 867                                                     <scientific_name>Neognathae</scientific_name>
 868                                                     <rank>superorder</rank>
 869                                                   </taxonomy>
 870                                                   <clade>
 871                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 872                                                     <clade>
 873                                                       <taxonomy>
 874                                                         <id provider="uniprot">9005</id>
 875                                                         <scientific_name>Phasianidae</scientific_name>
 876                                                         <rank>family</rank>
 877                                                       </taxonomy>
 878                                                       <clade>
 879                                                         <taxonomy>
 880                                                           <id provider="uniprot">9031</id>
 881                                                           <code>CHICK</code>
 882                                                           <scientific_name>Gallus gallus</scientific_name>
 883                                                           <common_name>Chicken</common_name>
 884                                                           <synonym>Gallus domesticus</synonym>
 885                                                           <rank>species</rank>
 886                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 887                                                         </taxonomy>
 888                                                       </clade>
 889                                                       <clade>
 890                                                         <taxonomy>
 891                                                           <id provider="uniprot">9103</id>
 892                                                           <code>MELGA</code>
 893                                                           <scientific_name>Meleagris gallopavo</scientific_name>
 894                                                           <common_name>Common turkey</common_name>
 895                                                           <rank>species</rank>
 896                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 897                                                         </taxonomy>
 898                                                       </clade>
 899                                                     </clade>
 900                                                     <clade>
 901                                                       <taxonomy>
 902                                                         <id provider="uniprot">8839</id>
 903                                                         <code>ANAPL</code>
 904                                                         <scientific_name>Anas platyrhynchos</scientific_name>
 905                                                         <common_name>Domestic duck</common_name>
 906                                                         <synonym>Anas boschas</synonym>
 907                                                         <rank>species</rank>
 908                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 909                                                       </taxonomy>
 910                                                     </clade>
 911                                                   </clade>
 912                                                   <clade>
 913                                                     <taxonomy>
 914                                                       <id provider="uniprot">59729</id>
 915                                                       <code>TAEGU</code>
 916                                                       <scientific_name>Taeniopygia guttata</scientific_name>
 917                                                       <common_name>Zebra finch</common_name>
 918                                                       <synonym>Poephila guttata</synonym>
 919                                                       <rank>species</rank>
 920                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 921                                                     </taxonomy>
 922                                                   </clade>
 923                                                 </clade>
 924                                                 <clade>
 925                                                   <taxonomy>
 926                                                     <id provider="uniprot">8496</id>
 927                                                     <code>ALLMI</code>
 928                                                     <scientific_name>Alligator mississippiensis</scientific_name>
 929                                                     <common_name>American alligator</common_name>
 930                                                     <rank>species</rank>
 931                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>
 932                                                   </taxonomy>
 933                                                 </clade>
 934                                               </clade>
 935                                               <clade>
 936                                                 <taxonomy>
 937                                                   <id provider="uniprot">13735</id>
 938                                                   <code>PELSI</code>
 939                                                   <scientific_name>Pelodiscus sinensis</scientific_name>
 940                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>
 941                                                   <common_name>Chinese softshell turtle</common_name>
 942                                                   <synonym>Trionyx sinensis</synonym>
 943                                                   <rank>species</rank>
 944                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>
 945                                                 </taxonomy>
 946                                               </clade>
 947                                             </clade>
 948                                             <clade>
 949                                               <taxonomy>
 950                                                 <id provider="uniprot">28377</id>
 951                                                 <code>ANOCA</code>
 952                                                 <scientific_name>Anolis carolinensis</scientific_name>
 953                                                 <authority>Voigt, 1832</authority>
 954                                                 <common_name>Green anole</common_name>
 955                                                 <synonym>American chameleon</synonym>
 956                                                 <rank>species</rank>
 957                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 958                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 959                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5a/Anolis_carolinensis.jpg/800px-Anolis_carolinensis.jpg</uri>
 960                                               </taxonomy>
 961                                             </clade>
 962                                           </clade>
 963                                         </clade>
 964                                         <clade>
 965                                           <taxonomy>
 966                                             <id provider="uniprot">8353</id>
 967                                             <scientific_name>Xenopus</scientific_name>
 968                                             <rank>genus</rank>
 969                                           </taxonomy>
 970                                           <clade>
 971                                             <taxonomy>
 972                                               <id provider="uniprot">8355</id>
 973                                               <code>XENLA</code>
 974                                               <scientific_name>Xenopus laevis</scientific_name>
 975                                               <authority>Daudin, 1802</authority>
 976                                               <common_name>African clawed frog</common_name>
 977                                               <synonym>Bufo laevis</synonym>
 978                                               <rank>species</rank>
 979                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
 980                                             </taxonomy>
 981                                           </clade>
 982                                           <clade>
 983                                             <taxonomy>
 984                                               <id provider="uniprot">8364</id>
 985                                               <code>XENTR</code>
 986                                               <scientific_name>Xenopus tropicalis</scientific_name>
 987                                               <common_name>Western clawed frog</common_name>
 988                                               <synonym>Silurana tropicalis</synonym>
 989                                               <rank>species</rank>
 990                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 991                                             </taxonomy>
 992                                           </clade>
 993                                         </clade>
 994                                       </clade>
 995                                       <clade>
 996                                         <taxonomy>
 997                                           <id provider="uniprot">7897</id>
 998                                           <code>LATCH</code>
 999                                           <scientific_name>Latimeria chalumnae</scientific_name>
1000                                           <common_name>West Indian ocean coelacanth</common_name>
1001                                           <rank>species</rank>
1002                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>
1003                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>
1004                                         </taxonomy>
1005                                       </clade>
1006                                     </clade>
1007                                     <clade>
1008                                       <name>Teleostei</name>
1009                                       <taxonomy>
1010                                         <id provider="uniprot">32443</id>
1011                                         <scientific_name>Teleostei</scientific_name>
1012                                       </taxonomy>
1013                                       <clade>
1014                                         <taxonomy>
1015                                           <id provider="uniprot">123368</id>
1016                                           <scientific_name>Acanthomorpha</scientific_name>
1017                                         </taxonomy>
1018                                         <clade>
1019                                           <taxonomy>
1020                                             <id provider="uniprot">32485</id>
1021                                             <scientific_name>Percomorpha</scientific_name>
1022                                           </taxonomy>
1023                                           <clade>
1024                                             <taxonomy>
1025                                               <id provider="uniprot">129949</id>
1026                                               <scientific_name>Smegmamorpha</scientific_name>
1027                                             </taxonomy>
1028                                             <clade>
1029                                               <taxonomy>
1030                                                 <id provider="uniprot">32456</id>
1031                                                 <scientific_name>Atherinomorpha</scientific_name>
1032                                               </taxonomy>
1033                                               <clade>
1034                                                 <taxonomy>
1035                                                   <id provider="uniprot">8090</id>
1036                                                   <code>ORYLA</code>
1037                                                   <scientific_name>Oryzias latipes</scientific_name>
1038                                                   <common_name>Medaka fish</common_name>
1039                                                   <synonym>Japanese ricefish</synonym>
1040                                                   <rank>species</rank>
1041                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
1042                                                 </taxonomy>
1043                                               </clade>
1044                                               <clade>
1045                                                 <taxonomy>
1046                                                   <id provider="uniprot">8083</id>
1047                                                   <code>XIPMA</code>
1048                                                   <scientific_name>Xiphophorus maculatus</scientific_name>
1049                                                   <authority>Guenther, 1866</authority>
1050                                                   <common_name>Southern platyfish</common_name>
1051                                                   <synonym>Platypoecilus maculatus</synonym>
1052                                                   <rank>species</rank>
1053                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>
1054                                                 </taxonomy>
1055                                               </clade>
1056                                             </clade>
1057                                             <clade>
1058                                               <taxonomy>
1059                                                 <id provider="uniprot">69293</id>
1060                                                 <code>GASAC</code>
1061                                                 <scientific_name>Gasterosteus aculeatus</scientific_name>
1062                                                 <common_name>Three-spined stickleback</common_name>
1063                                                 <rank>species</rank>
1064                                                 <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>
1065                                               </taxonomy>
1066                                             </clade>
1067                                           </clade>
1068                                           <clade>
1069                                             <taxonomy>
1070                                               <id provider="uniprot">31031</id>
1071                                               <scientific_name>Tetraodontidae</scientific_name>
1072                                               <common_name>puffers</common_name>
1073                                               <rank>family</rank>
1074                                             </taxonomy>
1075                                             <clade>
1076                                               <taxonomy>
1077                                                 <id provider="uniprot">31033</id>
1078                                                 <code>TAKRU</code>
1079                                                 <scientific_name>Takifugu rubripes</scientific_name>
1080                                                 <common_name>Japanese pufferfish</common_name>
1081                                                 <synonym>Fugu rubripes</synonym>
1082                                                 <rank>species</rank>
1083                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
1084                                               </taxonomy>
1085                                             </clade>
1086                                             <clade>
1087                                               <taxonomy>
1088                                                 <id provider="uniprot">99883</id>
1089                                                 <code>TETNG</code>
1090                                                 <scientific_name>Tetraodon nigroviridis</scientific_name>
1091                                                 <common_name>Green puffer</common_name>
1092                                                 <synonym>Chelonodon nigroviridis</synonym>
1093                                                 <rank>species</rank>
1094                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
1095                                               </taxonomy>
1096                                             </clade>
1097                                           </clade>
1098                                           <clade>
1099                                             <taxonomy>
1100                                               <id provider="uniprot">8128</id>
1101                                               <code>ORENI</code>
1102                                               <scientific_name>Tilapia nilotica</scientific_name>
1103                                               <authority>Linnaeus, 1758</authority>
1104                                               <common_name>Nile tilapia</common_name>
1105                                               <synonym>Tilapia nilotica</synonym>
1106                                               <rank>species</rank>
1107                                               <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>
1108                                             </taxonomy>
1109                                           </clade>
1110                                         </clade>
1111                                         <clade>
1112                                           <taxonomy>
1113                                             <id provider="uniprot">8049</id>
1114                                             <code>GADMO</code>
1115                                             <scientific_name>Gadus morhua</scientific_name>
1116                                             <common_name>Atlantic cod</common_name>
1117                                             <rank>species</rank>
1118                                             <uri>http://www.marinbi.com/g-morhua.jpg</uri>
1119                                           </taxonomy>
1120                                         </clade>
1121                                       </clade>
1122                                       <clade>
1123                                         <taxonomy>
1124                                           <id provider="uniprot">7955</id>
1125                                           <code>DANRE</code>
1126                                           <scientific_name>Danio rerio</scientific_name>
1127                                           <common_name>Zebrafish</common_name>
1128                                           <synonym>Brachydanio rerio</synonym>
1129                                           <rank>species</rank>
1130                                           <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1131                                         </taxonomy>
1132                                       </clade>
1133                                     </clade>
1134                                   </clade>
1135                                   <clade>
1136                                     <taxonomy>
1137                                       <id provider="uniprot">7868</id>
1138                                       <code>CALMI</code>
1139                                       <scientific_name>Callorhynchus milii</scientific_name>
1140                                       <common_name>Australian ghost shark</common_name>
1141                                       <synonym>Australian ghost shark</synonym>
1142                                       <rank>species</rank>
1143                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1144                                     </taxonomy>
1145                                   </clade>
1146                                 </clade>
1147                                 <clade>
1148                                   <taxonomy>
1149                                     <id provider="uniprot">7757</id>
1150                                     <code>PETMA</code>
1151                                     <scientific_name>Petromyzon marinus</scientific_name>
1152                                     <common_name>Sea lamprey</common_name>
1153                                     <rank>species</rank>
1154                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1155                                   </taxonomy>
1156                                 </clade>
1157                               </clade>
1158                               <clade>
1159                                 <name>Urochordata</name>
1160                                 <taxonomy>
1161                                   <id provider="uniprot">7712</id>
1162                                   <scientific_name>Urochordata</scientific_name>
1163                                   <rank>subphylum</rank>
1164                                 </taxonomy>
1165                                 <clade>
1166                                   <taxonomy>
1167                                     <id provider="uniprot">7718</id>
1168                                     <scientific_name>Ciona</scientific_name>
1169                                     <rank>genus</rank>
1170                                   </taxonomy>
1171                                   <clade>
1172                                     <taxonomy>
1173                                       <id provider="uniprot">7719</id>
1174                                       <code>CIOIN</code>
1175                                       <scientific_name>Ciona intestinalis</scientific_name>
1176                                       <common_name>Transparent sea squirt</common_name>
1177                                       <synonym>Ascidia intestinalis</synonym>
1178                                       <rank>species</rank>
1179                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1180                                     </taxonomy>
1181                                   </clade>
1182                                   <clade>
1183                                     <taxonomy>
1184                                       <id provider="uniprot">51511</id>
1185                                       <code>CIOSA</code>
1186                                       <scientific_name>Ciona savignyi</scientific_name>
1187                                       <common_name>Pacific transparent sea squirt</common_name>
1188                                       <rank>species</rank>
1189                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1190                                     </taxonomy>
1191                                   </clade>
1192                                 </clade>
1193                                 <clade>
1194                                   <taxonomy>
1195                                     <id provider="ncbi">34765</id>
1196                                     <code>OIKDI</code>
1197                                     <scientific_name>Oikopleura dioica</scientific_name>
1198                                     <common_name>Tunicate</common_name>
1199                                     <rank>species</rank>
1200                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1201                                   </taxonomy>
1202                                 </clade>
1203                               </clade>
1204                             </clade>
1205                             <clade>
1206                               <taxonomy>
1207                                 <id provider="uniprot">7739</id>
1208                                 <code>BRAFL</code>
1209                                 <scientific_name>Branchiostoma floridae</scientific_name>
1210                                 <common_name>Florida lancelet</common_name>
1211                                 <synonym>Amphioxus</synonym>
1212                                 <rank>species</rank>
1213                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>
1214                               </taxonomy>
1215                             </clade>
1216                           </clade>
1217                           <clade>
1218                             <name>Hemichordata &amp; Echinodermata</name>
1219                             <clade>
1220                               <taxonomy>
1221                                 <id provider="uniprot">10224</id>
1222                                 <code>SACKO</code>
1223                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>
1224                                 <authority>Agassiz, 1873</authority>
1225                                 <common_name>Acorn worm</common_name>
1226                                 <rank>species</rank>
1227                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>
1228                               </taxonomy>
1229                             </clade>
1230                             <clade>
1231                               <taxonomy>
1232                                 <id provider="uniprot">7668</id>
1233                                 <code>STRPU</code>
1234                                 <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1235                                 <common_name>Purple sea urchin</common_name>
1236                                 <rank>species</rank>
1237                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1238                               </taxonomy>
1239                             </clade>
1240                           </clade>
1241                         </clade>
1242                         <clade>
1243                           <taxonomy>
1244                             <id provider="uniprot">33317</id>
1245                             <scientific_name>Protostomia</scientific_name>
1246                           </taxonomy>
1247                           <clade>
1248                             <taxonomy>
1249                               <id provider="uniprot">1206794</id>
1250                               <scientific_name>Ecdysozoa</scientific_name>
1251                             </taxonomy>
1252                             <reference doi="10.1098/rstb.2007.2243">
1253                               <desc>The evolution of the Ecdysozoa</desc>
1254                             </reference>
1255                             <clade>
1256                               <taxonomy>
1257                                 <id provider="uniprot">88770</id>
1258                                 <scientific_name>Panarthropoda</scientific_name>
1259                               </taxonomy>
1260                               <clade>
1261                                 <name>Onychophora &amp; Arthropoda</name>
1262                                 <reference doi="10.1073/pnas.1105499108">
1263                                   <desc>MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda</desc>
1264                                 </reference>
1265                                 <clade>
1266                                   <taxonomy>
1267                                     <id provider="uniprot">6656</id>
1268                                     <scientific_name>Arthropoda</scientific_name>
1269                                     <rank>phylum</rank>
1270                                   </taxonomy>
1271                                   <reference doi="10.1098/rspb.2010.0590">
1272                                     <desc>A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata</desc>
1273                                   </reference>
1274                                   <clade>
1275                                     <taxonomy>
1276                                       <id provider="uniprot">197563</id>
1277                                       <scientific_name>Mandibulata</scientific_name>
1278                                     </taxonomy>
1279                                     <reference doi="doi:10.1038/ncomms3485">
1280                                       <desc>Arthropod fossil data increase congruence of morphological and molecular phylogenies</desc>
1281                                     </reference>
1282                                     <reference>
1283                                     </reference>
1284                                     <clade>
1285                                       <taxonomy>
1286                                         <id provider="uniprot">197562</id>
1287                                         <scientific_name>Pancrustacea</scientific_name>
1288                                       </taxonomy>
1289                                       <clade>
1290                                         <taxonomy>
1291                                           <id provider="uniprot">6960</id>
1292                                           <scientific_name>Hexapoda</scientific_name>
1293                                           <rank>superclass</rank>
1294                                         </taxonomy>
1295                                         <clade>
1296                                           <taxonomy>
1297                                             <id provider="uniprot">50557</id>
1298                                             <scientific_name>Insecta</scientific_name>
1299                                             <common_name>true insects</common_name>
1300                                             <rank>class</rank>
1301                                           </taxonomy>
1302                                           <clade>
1303                                             <taxonomy>
1304                                               <id provider="uniprot">33340</id>
1305                                               <scientific_name>Neoptera</scientific_name>
1306                                               <rank>subclass</rank>
1307                                             </taxonomy>
1308                                             <clade>
1309                                               <taxonomy>
1310                                                 <id provider="uniprot">33392</id>
1311                                                 <scientific_name>Endopterygota</scientific_name>
1312                                                 <rank>infraclass</rank>
1313                                               </taxonomy>
1314                                               <clade>
1315                                                 <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1316                                                 <clade>
1317                                                   <name>Lepidoptera &amp; Diptera</name>
1318                                                   <clade>
1319                                                     <taxonomy>
1320                                                       <id provider="uniprot">7147</id>
1321                                                       <scientific_name>Diptera</scientific_name>
1322                                                       <rank>order</rank>
1323                                                     </taxonomy>
1324                                                     <clade>
1325                                                       <taxonomy>
1326                                                         <id provider="uniprot">7215</id>
1327                                                         <scientific_name>Drosophila</scientific_name>
1328                                                         <common_name>fruit flies</common_name>
1329                                                         <rank>genus</rank>
1330                                                       </taxonomy>
1331                                                       <reference doi="10.1534/genetics.111.126540">
1332                                                         <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>
1333                                                       </reference>
1334                                                       <clade>
1335                                                         <taxonomy>
1336                                                           <id provider="uniprot">32341</id>
1337                                                           <scientific_name>Sophophora</scientific_name>
1338                                                           <rank>subgenus</rank>
1339                                                         </taxonomy>
1340                                                         <clade>
1341                                                           <name>melanogaster &amp; pseudoobscura subgroups</name>
1342                                                           <clade>
1343                                                             <taxonomy>
1344                                                               <id provider="uniprot">32346</id>
1345                                                               <scientific_name>melanogaster group</scientific_name>
1346                                                             </taxonomy>
1347                                                             <clade>
1348                                                               <taxonomy>
1349                                                                 <id provider="uniprot">32351</id>
1350                                                                 <scientific_name>melanogaster subgroup</scientific_name>
1351                                                               </taxonomy>
1352                                                               <clade>
1353                                                                 <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>
1354                                                                 <clade>
1355                                                                   <name>DROSE &amp; DROSI &amp; DROME</name>
1356                                                                   <clade>
1357                                                                     <name>DROSE &amp; DROSI</name>
1358                                                                     <clade>
1359                                                                       <taxonomy>
1360                                                                         <id provider="uniprot">7238</id>
1361                                                                         <code>DROSE</code>
1362                                                                         <scientific_name>Drosophila sechellia</scientific_name>
1363                                                                         <common_name>Fruit fly</common_name>
1364                                                                         <rank>species</rank>
1365                                                                       </taxonomy>
1366                                                                     </clade>
1367                                                                     <clade>
1368                                                                       <taxonomy>
1369                                                                         <id provider="uniprot">7240</id>
1370                                                                         <code>DROSI</code>
1371                                                                         <scientific_name>Drosophila simulans</scientific_name>
1372                                                                         <common_name>Fruit fly</common_name>
1373                                                                         <rank>species</rank>
1374                                                                       </taxonomy>
1375                                                                     </clade>
1376                                                                   </clade>
1377                                                                   <clade>
1378                                                                     <taxonomy>
1379                                                                       <id provider="uniprot">7227</id>
1380                                                                       <code>DROME</code>
1381                                                                       <scientific_name>Drosophila melanogaster</scientific_name>
1382                                                                       <common_name>Fruit fly</common_name>
1383                                                                       <rank>species</rank>
1384                                                                       <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>
1385                                                                     </taxonomy>
1386                                                                   </clade>
1387                                                                 </clade>
1388                                                                 <clade>
1389                                                                   <taxonomy>
1390                                                                     <id provider="uniprot">7245</id>
1391                                                                     <code>DROYA</code>
1392                                                                     <scientific_name>Drosophila yakuba</scientific_name>
1393                                                                     <common_name>Fruit fly</common_name>
1394                                                                     <rank>species</rank>
1395                                                                   </taxonomy>
1396                                                                 </clade>
1397                                                               </clade>
1398                                                               <clade>
1399                                                                 <taxonomy>
1400                                                                   <id provider="uniprot">7220</id>
1401                                                                   <code>DROER</code>
1402                                                                   <scientific_name>Drosophila erecta</scientific_name>
1403                                                                   <common_name>Fruit fly</common_name>
1404                                                                   <rank>species</rank>
1405                                                                 </taxonomy>
1406                                                               </clade>
1407                                                             </clade>
1408                                                             <clade>
1409                                                               <taxonomy>
1410                                                                 <id provider="uniprot">7217</id>
1411                                                                 <code>DROAN</code>
1412                                                                 <scientific_name>Drosophila ananassae</scientific_name>
1413                                                                 <common_name>Fruit fly</common_name>
1414                                                                 <rank>species</rank>
1415                                                               </taxonomy>
1416                                                             </clade>
1417                                                           </clade>
1418                                                           <clade>
1419                                                             <taxonomy>
1420                                                               <id provider="uniprot">32358</id>
1421                                                               <scientific_name>pseudoobscura subgroup</scientific_name>
1422                                                             </taxonomy>
1423                                                             <clade>
1424                                                               <taxonomy>
1425                                                                 <id provider="uniprot">7234</id>
1426                                                                 <code>DROPE</code>
1427                                                                 <scientific_name>Drosophila persimilis</scientific_name>
1428                                                                 <common_name>Fruit fly</common_name>
1429                                                                 <rank>species</rank>
1430                                                               </taxonomy>
1431                                                             </clade>
1432                                                             <clade>
1433                                                               <taxonomy>
1434                                                                 <id provider="uniprot">46245</id>
1435                                                                 <code>DROPS</code>
1436                                                                 <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1437                                                                 <common_name>Fruit fly</common_name>
1438                                                                 <rank>subspecies</rank>
1439                                                                 <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>
1440                                                               </taxonomy>
1441                                                             </clade>
1442                                                           </clade>
1443                                                         </clade>
1444                                                         <clade>
1445                                                           <taxonomy>
1446                                                             <id provider="uniprot">7260</id>
1447                                                             <code>DROWI</code>
1448                                                             <scientific_name>Drosophila willistoni</scientific_name>
1449                                                             <common_name>Fruit fly</common_name>
1450                                                             <rank>species</rank>
1451                                                           </taxonomy>
1452                                                         </clade>
1453                                                       </clade>
1454                                                       <clade>
1455                                                         <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>
1456                                                         <clade>
1457                                                           <name>Drosophila subgenus</name>
1458                                                           <clade>
1459                                                             <taxonomy>
1460                                                               <id provider="uniprot">7230</id>
1461                                                               <code>DROMO</code>
1462                                                               <scientific_name>Drosophila mojavensis</scientific_name>
1463                                                               <common_name>Fruit fly</common_name>
1464                                                               <rank>species</rank>
1465                                                             </taxonomy>
1466                                                           </clade>
1467                                                           <clade>
1468                                                             <taxonomy>
1469                                                               <id provider="uniprot">7244</id>
1470                                                               <code>DROVI</code>
1471                                                               <scientific_name>Drosophila virilis</scientific_name>
1472                                                               <common_name>Fruit fly</common_name>
1473                                                               <rank>species</rank>
1474                                                             </taxonomy>
1475                                                           </clade>
1476                                                         </clade>
1477                                                         <clade>
1478                                                           <taxonomy>
1479                                                             <id provider="uniprot">7222</id>
1480                                                             <code>DROGR</code>
1481                                                             <scientific_name>Drosophila grimshawi</scientific_name>
1482                                                             <common_name>Fruit fly</common_name>
1483                                                             <synonym>Idiomyia grimshawi</synonym>
1484                                                             <rank>species</rank>
1485                                                             <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>
1486                                                           </taxonomy>
1487                                                         </clade>
1488                                                       </clade>
1489                                                     </clade>
1490                                                     <clade>
1491                                                       <taxonomy>
1492                                                         <id provider="uniprot">7157</id>
1493                                                         <scientific_name>Culicidae</scientific_name>
1494                                                         <common_name>mosquitos</common_name>
1495                                                         <rank>family</rank>
1496                                                       </taxonomy>
1497                                                       <clade>
1498                                                         <taxonomy>
1499                                                           <id provider="uniprot">7159</id>
1500                                                           <code>AEDAE</code>
1501                                                           <scientific_name>Aedes aegypti</scientific_name>
1502                                                           <common_name>Yellowfever mosquito</common_name>
1503                                                           <synonym>Culex aegypti</synonym>
1504                                                           <rank>species</rank>
1505                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1506                                                         </taxonomy>
1507                                                       </clade>
1508                                                       <clade>
1509                                                         <taxonomy>
1510                                                           <id provider="uniprot">7165</id>
1511                                                           <code>ANOGA</code>
1512                                                           <scientific_name>Anopheles gambiae</scientific_name>
1513                                                           <common_name>African malaria mosquito</common_name>
1514                                                           <rank>species</rank>
1515                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1516                                                         </taxonomy>
1517                                                       </clade>
1518                                                       <clade>
1519                                                         <taxonomy>
1520                                                           <id provider="uniprot">7175</id>
1521                                                           <code>CULPI</code>
1522                                                           <scientific_name>Culex pipiens</scientific_name>
1523                                                           <common_name>House mosquito</common_name>
1524                                                           <rank>species</rank>
1525                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg</uri>
1526                                                         </taxonomy>
1527                                                       </clade>
1528                                                     </clade>
1529                                                   </clade>
1530                                                   <clade>
1531                                                     <taxonomy>
1532                                                       <id provider="uniprot">104431</id>
1533                                                       <scientific_name>Obtectomera</scientific_name>
1534                                                     </taxonomy>
1535                                                     <clade>
1536                                                       <taxonomy>
1537                                                         <id provider="uniprot">7091</id>
1538                                                         <code>BOMMO</code>
1539                                                         <scientific_name>Bombyx mori</scientific_name>
1540                                                         <common_name>Silk moth</common_name>
1541                                                         <rank>species</rank>
1542                                                         <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>
1543                                                       </taxonomy>
1544                                                     </clade>
1545                                                     <clade>
1546                                                       <taxonomy>
1547                                                         <id provider="uniprot">13037</id>
1548                                                         <code>DANPL</code>
1549                                                         <scientific_name>Danaus plexippus</scientific_name>
1550                                                         <common_name>Monarch butterfly</common_name>
1551                                                         <rank>species</rank>
1552                                                         <uri>http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg</uri>
1553                                                         <uri>http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg</uri>
1554                                                       </taxonomy>
1555                                                     </clade>
1556                                                   </clade>
1557                                                 </clade>
1558                                                 <clade>
1559                                                   <taxonomy>
1560                                                     <id provider="uniprot">7400</id>
1561                                                     <scientific_name>Apocrita</scientific_name>
1562                                                     <common_name>wasps, ants and bees</common_name>
1563                                                   </taxonomy>
1564                                                   <clade>
1565                                                     <taxonomy>
1566                                                       <id provider="uniprot">7434</id>
1567                                                       <scientific_name>Aculeata</scientific_name>
1568                                                       <rank>suborder</rank>
1569                                                     </taxonomy>
1570                                                     <clade>
1571                                                       <taxonomy>
1572                                                         <id provider="uniprot">36668</id>
1573                                                         <scientific_name>Formicidae</scientific_name>
1574                                                         <common_name>ants</common_name>
1575                                                         <rank>family</rank>
1576                                                       </taxonomy>
1577                                                       <clade>
1578                                                         <taxonomy>
1579                                                           <id provider="uniprot">143999</id>
1580                                                           <scientific_name>Attini</scientific_name>
1581                                                           <rank>tribe</rank>
1582                                                         </taxonomy>
1583                                                         <clade>
1584                                                           <taxonomy>
1585                                                             <id provider="uniprot">12957</id>
1586                                                             <code>ATTCE</code>
1587                                                             <scientific_name>Atta cephalotes</scientific_name>
1588                                                             <authority>Linnaeus, 1758</authority>
1589                                                             <common_name>Leafcutter ant</common_name>
1590                                                             <rank>species</rank>
1591                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>
1592                                                           </taxonomy>
1593                                                         </clade>
1594                                                         <clade>
1595                                                           <taxonomy>
1596                                                             <id provider="uniprot">103372</id>
1597                                                             <code>ACREC</code>
1598                                                             <scientific_name>Acromyrmex echinatior</scientific_name>
1599                                                             <authority>Forel, 1899</authority>
1600                                                             <common_name>Panamanian leafcutter ant</common_name>
1601                                                             <synonym>Acromyrmex octospinosus echinatior</synonym>
1602                                                             <rank>species</rank>
1603                                                             <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>
1604                                                           </taxonomy>
1605                                                         </clade>
1606                                                       </clade>
1607                                                       <clade>
1608                                                         <taxonomy>
1609                                                           <id provider="uniprot">104421</id>
1610                                                           <code>CAMFO</code>
1611                                                           <scientific_name>Camponotus floridanus</scientific_name>
1612                                                           <authority>Buckley, 1866</authority>
1613                                                           <common_name>Florida carpenter ant</common_name>
1614                                                           <rank>species</rank>
1615                                                           <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>
1616                                                         </taxonomy>
1617                                                       </clade>
1618                                                     </clade>
1619                                                     <clade>
1620                                                       <taxonomy>
1621                                                         <id provider="uniprot">7460</id>
1622                                                         <code>APIME</code>
1623                                                         <scientific_name>Apis mellifera</scientific_name>
1624                                                         <common_name>Honeybee</common_name>
1625                                                         <rank>species</rank>
1626                                                         <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>
1627                                                       </taxonomy>
1628                                                     </clade>
1629                                                   </clade>
1630                                                   <clade>
1631                                                     <taxonomy>
1632                                                       <id provider="uniprot">7425</id>
1633                                                       <code>NASVI</code>
1634                                                       <scientific_name>Nasonia vitripennis</scientific_name>
1635                                                       <common_name>Parasitic wasp</common_name>
1636                                                       <rank>species</rank>
1637                                                       <uri>http://www.freshpond.org/nasonia.jpg</uri>
1638                                                     </taxonomy>
1639                                                   </clade>
1640                                                 </clade>
1641                                               </clade>
1642                                               <clade>
1643                                                 <taxonomy>
1644                                                   <id provider="uniprot">7070</id>
1645                                                   <code>TRICA</code>
1646                                                   <scientific_name>Tribolium castaneum</scientific_name>
1647                                                   <common_name>Red flour beetle</common_name>
1648                                                   <rank>species</rank>
1649                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>
1650                                                 </taxonomy>
1651                                               </clade>
1652                                             </clade>
1653                                             <clade>
1654                                               <taxonomy>
1655                                                 <id provider="uniprot">33342</id>
1656                                                 <scientific_name>Paraneoptera</scientific_name>
1657                                                 <rank>infraclass</rank>
1658                                               </taxonomy>
1659                                               <clade>
1660                                                 <taxonomy>
1661                                                   <id provider="uniprot">7524</id>
1662                                                   <scientific_name>Hemiptera</scientific_name>
1663                                                   <rank>order</rank>
1664                                                 </taxonomy>
1665                                                 <clade>
1666                                                   <taxonomy>
1667                                                     <id provider="uniprot">7029</id>
1668                                                     <code>ACYPI</code>
1669                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>
1670                                                     <common_name>Pea aphid</common_name>
1671                                                     <rank>species</rank>
1672                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>
1673                                                   </taxonomy>
1674                                                 </clade>
1675                                                 <clade>
1676                                                   <taxonomy>
1677                                                     <id provider="uniprot">13249</id>
1678                                                     <code>RHOPR</code>
1679                                                     <scientific_name>Rhodnius prolixus</scientific_name>
1680                                                     <common_name>Triatomid bug</common_name>
1681                                                     <rank>species</rank>
1682                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1683                                                   </taxonomy>
1684                                                 </clade>
1685                                               </clade>
1686                                               <clade>
1687                                                 <taxonomy>
1688                                                   <id provider="uniprot">121224</id>
1689                                                   <code>PEDHC</code>
1690                                                   <scientific_name>Pediculus humanus subsp. corporis</scientific_name>
1691                                                   <common_name>Body louse</common_name>
1692                                                   <rank>subspecies</rank>
1693                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>
1694                                                 </taxonomy>
1695                                               </clade>
1696                                             </clade>
1697                                           </clade>
1698                                           <clade>
1699                                             <taxonomy>
1700                                               <id provider="uniprot">568273</id>
1701                                               <scientific_name>Machilis germanica</scientific_name>
1702                                               <rank>species</rank>
1703                                               <uri>http://www.naturefg.com/images/c-animals/machilis.jpg</uri>
1704                                             </taxonomy>
1705                                           </clade>
1706                                         </clade>
1707                                         <clade>
1708                                           <taxonomy>
1709                                             <id provider="uniprot">383857</id>
1710                                             <scientific_name>Campodea fragilis</scientific_name>
1711                                             <rank>species</rank>
1712                                             <uri>http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg</uri>
1713                                           </taxonomy>
1714                                         </clade>
1715                                       </clade>
1716                                       <clade>
1717                                         <taxonomy>
1718                                           <id provider="uniprot">6657</id>
1719                                           <scientific_name>Crustacea</scientific_name>
1720                                           <rank>subphylum</rank>
1721                                         </taxonomy>
1722                                         <clade>
1723                                           <taxonomy>
1724                                             <id provider="uniprot">6658</id>
1725                                             <scientific_name>Branchiopoda</scientific_name>
1726                                             <rank>class</rank>
1727                                           </taxonomy>
1728                                           <clade>
1729                                             <taxonomy>
1730                                               <id provider="uniprot">6661</id>
1731                                               <code>ARTSF</code>
1732                                               <scientific_name>Artemia franciscana</scientific_name>
1733                                               <common_name>Brine shrimp</common_name>
1734                                               <synonym>Artemia sanfranciscana</synonym>
1735                                               <rank>species</rank>
1736                                               <uri>http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg</uri>
1737                                             </taxonomy>
1738                                           </clade>
1739                                           <clade>
1740                                             <taxonomy>
1741                                               <id provider="uniprot">6669</id>
1742                                               <code>DAPPU</code>
1743                                               <scientific_name>Daphnia pulex</scientific_name>
1744                                               <common_name>Water flea</common_name>
1745                                               <rank>species</rank>
1746                                               <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1747                                             </taxonomy>
1748                                           </clade>
1749                                         </clade>
1750                                         <clade>
1751                                           <taxonomy>
1752                                             <id provider="uniprot">6706</id>
1753                                             <code>HOMAM</code>
1754                                             <scientific_name>Homarus americanus</scientific_name>
1755                                             <common_name>American lobster</common_name>
1756                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg</uri>
1757                                           </taxonomy>
1758                                         </clade>
1759                                       </clade>
1760                                     </clade>
1761                                     <clade>
1762                                       <taxonomy>
1763                                         <id provider="uniprot">61985</id>
1764                                         <scientific_name>Myriapoda</scientific_name>
1765                                         <rank>subphylum</rank>
1766                                       </taxonomy>
1767                                       <clade>
1768                                         <taxonomy>
1769                                           <id provider="uniprot">7553</id>
1770                                           <scientific_name>Diplopoda</scientific_name>
1771                                           <common_name>millipedes</common_name>
1772                                           <rank>class</rank>
1773                                         </taxonomy>
1774                                         <clade>
1775                                           <taxonomy>
1776                                             <id provider="uniprot">118561</id>
1777                                             <scientific_name>Helminthomorpha</scientific_name>
1778                                             <rank>subclass</rank>
1779                                           </taxonomy>
1780                                           <clade>
1781                                             <taxonomy>
1782                                               <id provider="uniprot">364406</id>
1783                                               <code>ANTGC</code>
1784                                               <scientific_name>Antrokoreana gracilipes</scientific_name>
1785                                               <common_name>Troglobite millipede</common_name>
1786                                               <rank>species</rank>
1787                                             </taxonomy>
1788                                           </clade>
1789                                           <clade>
1790                                             <taxonomy>
1791                                               <id provider="uniprot">174156</id>
1792                                               <code>NARAN</code>
1793                                               <scientific_name>Narceus annularis</scientific_name>
1794                                               <common_name>Millipede</common_name>
1795                                               <rank>species</rank>
1796                                               <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1797                                             </taxonomy>
1798                                           </clade>
1799                                         </clade>
1800                                         <clade>
1801                                           <taxonomy>
1802                                             <id provider="uniprot">52428</id>
1803                                             <scientific_name>Polyxenus lagurus</scientific_name>
1804                                             <common_name>bristly millipede</common_name>
1805                                             <rank>species</rank>
1806                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1807                                           </taxonomy>
1808                                         </clade>
1809                                       </clade>
1810                                       <clade>
1811                                         <taxonomy>
1812                                           <id provider="uniprot">7540</id>
1813                                           <scientific_name>Chilopoda</scientific_name>
1814                                           <common_name>centipedes</common_name>
1815                                           <rank>class</rank>
1816                                         </taxonomy>
1817                                         <clade>
1818                                           <taxonomy>
1819                                             <id provider="uniprot">29022</id>
1820                                             <code>SCUCO</code>
1821                                             <scientific_name>Scutigera coleoptrata</scientific_name>
1822                                             <common_name>House centipede</common_name>
1823                                             <rank>species</rank>
1824                                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1825                                           </taxonomy>
1826                                         </clade>
1827                                         <clade>
1828                                           <taxonomy>
1829                                             <id provider="uniprot">126957</id>
1830                                             <code>STRMM</code>
1831                                             <scientific_name>Strigamia maritima</scientific_name>
1832                                             <common_name>European centipede</common_name>
1833                                             <synonym>Geophilus maritimus</synonym>
1834                                             <rank>species</rank>
1835                                             <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1836                                           </taxonomy>
1837                                         </clade>
1838                                       </clade>
1839                                     </clade>
1840                                   </clade>
1841                                   <clade>
1842                                     <taxonomy>
1843                                       <id provider="uniprot">6843</id>
1844                                       <scientific_name>Chelicerata</scientific_name>
1845                                       <rank>subphylum</rank>
1846                                     </taxonomy>
1847                                     <reference doi="10.1016/j.ympev.2009.08.014">
1848                                       <desc>A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)</desc>
1849                                     </reference>
1850                                     <reference>
1851                                     </reference>
1852                                     <reference>
1853                                     </reference>
1854                                     <reference>
1855                                     </reference>
1856                                     <clade>
1857                                       <name>Arachnida &amp; Merostomata</name>
1858                                       <taxonomy>
1859                                         <id>Sea spider</id>
1860                                       </taxonomy>
1861                                       <clade>
1862                                         <taxonomy>
1863                                           <id provider="uniprot">6854</id>
1864                                           <scientific_name>Arachnida</scientific_name>
1865                                           <rank>class</rank>
1866                                         </taxonomy>
1867                                         <clade>
1868                                           <taxonomy>
1869                                             <id provider="uniprot">6933</id>
1870                                             <scientific_name>Acari</scientific_name>
1871                                             <common_name>mites &amp; ticks</common_name>
1872                                             <rank>subclass</rank>
1873                                           </taxonomy>
1874                                           <clade>
1875                                             <taxonomy>
1876                                               <id provider="uniprot">6945</id>
1877                                               <code>IXOSC</code>
1878                                               <scientific_name>Ixodes scapularis</scientific_name>
1879                                               <common_name>Black-legged tick</common_name>
1880                                               <synonym>Deer tick</synonym>
1881                                               <rank>species</rank>
1882                                               <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1883                                             </taxonomy>
1884                                           </clade>
1885                                           <clade>
1886                                             <taxonomy>
1887                                               <id provider="uniprot">32264</id>
1888                                               <code>TETUR</code>
1889                                               <scientific_name>Tetranychus urticae</scientific_name>
1890                                               <common_name>Two-spotted spider mite</common_name>
1891                                               <rank>species</rank>
1892                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg</uri>
1893                                             </taxonomy>
1894                                           </clade>
1895                                         </clade>
1896                                         <clade>
1897                                           <taxonomy>
1898                                             <id provider="uniprot">34649</id>
1899                                             <code>MESMA</code>
1900                                             <scientific_name>Mesobuthus martensii</scientific_name>
1901                                             <authority>Karsch, 1879</authority>
1902                                             <common_name>Manchurian scorpion</common_name>
1903                                             <synonym>Buthus martensi</synonym>
1904                                             <synonym>Buthus martensii</synonym>
1905                                             <rank>species</rank>
1906                                             <uri>http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg</uri>
1907                                           </taxonomy>
1908                                         </clade>
1909                                       </clade>
1910                                       <clade>
1911                                         <taxonomy>
1912                                           <id provider="uniprot">6850</id>
1913                                           <code>LIMPO</code>
1914                                           <scientific_name>Limulus polyphemus</scientific_name>
1915                                           <common_name>Atlantic horseshoe crab</common_name>
1916                                           <rank>species</rank>
1917                                           <uri>http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG</uri>
1918                                         </taxonomy>
1919                                       </clade>
1920                                     </clade>
1921                                     <clade>
1922                                       <taxonomy>
1923                                         <id provider="uniprot">258330</id>
1924                                         <scientific_name>Ammothea hilgendorfi</scientific_name>
1925                                         <rank>species</rank>
1926                                         <uri>http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg</uri>
1927                                       </taxonomy>
1928                                     </clade>
1929                                   </clade>
1930                                 </clade>
1931                                 <clade>
1932                                   <taxonomy>
1933                                     <id provider="uniprot">488523</id>
1934                                     <scientific_name>Euperipatoides kanangrensis</scientific_name>
1935                                     <authority>Reid, 1996</authority>
1936                                     <rank>species</rank>
1937                                     <uri>http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg</uri>
1938                                     <uri>http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg</uri>
1939                                   </taxonomy>
1940                                 </clade>
1941                               </clade>
1942                               <clade>
1943                                 <taxonomy>
1944                                   <id provider="uniprot">232323</id>
1945                                   <code>HYPDU</code>
1946                                   <scientific_name>Hypsibius dujardini</scientific_name>
1947                                   <common_name>Water bear</common_name>
1948                                   <synonym>Macrobiotus dujardini</synonym>
1949                                   <rank>species</rank>
1950                                   <uri>http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg</uri>
1951                                 </taxonomy>
1952                               </clade>
1953                             </clade>
1954                             <clade>
1955                               <taxonomy>
1956                                 <id provider="uniprot">6231</id>
1957                                 <scientific_name>Nematoda</scientific_name>
1958                                 <common_name>roundworms</common_name>
1959                                 <rank>phylum</rank>
1960                               </taxonomy>
1961                               <clade>
1962                                 <taxonomy>
1963                                   <id provider="uniprot">119089</id>
1964                                   <scientific_name>Chromadorea</scientific_name>
1965                                   <rank>class</rank>
1966                                 </taxonomy>
1967                                 <reference doi="10.1038/32160">
1968                                 </reference>
1969                                 <clade>
1970                                   <name>nematode Clade V</name>
1971                                   <clade>
1972                                     <taxonomy>
1973                                       <id provider="uniprot">6237</id>
1974                                       <scientific_name>Caenorhabditis</scientific_name>
1975                                       <rank>genus</rank>
1976                                     </taxonomy>
1977                                     <reference doi="10.1073/pnas.0403094101">
1978                                       <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>
1979                                     </reference>
1980                                     <clade>
1981                                       <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>
1982                                       <clade>
1983                                         <name>CAEBR &amp; CAERE &amp; CAEBE</name>
1984                                         <clade>
1985                                           <name>CAEBR &amp; CAERE</name>
1986                                           <clade>
1987                                             <taxonomy>
1988                                               <id provider="uniprot">6238</id>
1989                                               <code>CAEBR</code>
1990                                               <scientific_name>Caenorhabditis briggsae</scientific_name>
1991                                               <rank>species</rank>
1992                                               <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>
1993                                             </taxonomy>
1994                                           </clade>
1995                                           <clade>
1996                                             <taxonomy>
1997                                               <id provider="uniprot">31234</id>
1998                                               <code>CAERE</code>
1999                                               <scientific_name>Caenorhabditis remanei</scientific_name>
2000                                               <synonym>Caenorhabditis vulgaris</synonym>
2001                                               <rank>species</rank>
2002                                               <uri>http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg</uri>
2003                                             </taxonomy>
2004                                           </clade>
2005                                         </clade>
2006                                         <clade>
2007                                           <taxonomy>
2008                                             <id provider="uniprot">135651</id>
2009                                             <code>CAEBE</code>
2010                                             <scientific_name>Caenorhabditis brenneri</scientific_name>
2011                                             <common_name>Nematode worm</common_name>
2012                                             <synonym>Caenorhabditis CB5161</synonym>
2013                                             <rank>species</rank>
2014                                           </taxonomy>
2015                                         </clade>
2016                                       </clade>
2017                                       <clade>
2018                                         <taxonomy>
2019                                           <id provider="uniprot">6239</id>
2020                                           <code>CAEEL</code>
2021                                           <scientific_name>Caenorhabditis elegans</scientific_name>
2022                                           <rank>species</rank>
2023                                           <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>
2024                                         </taxonomy>
2025                                       </clade>
2026                                     </clade>
2027                                     <clade>
2028                                       <taxonomy>
2029                                         <id provider="uniprot">281687</id>
2030                                         <code>CAEJA</code>
2031                                         <scientific_name>Caenorhabditis japonica</scientific_name>
2032                                         <rank>species</rank>
2033                                       </taxonomy>
2034                                     </clade>
2035                                   </clade>
2036                                   <clade>
2037                                     <taxonomy>
2038                                       <id provider="uniprot">54126</id>
2039                                       <code>PRIPA</code>
2040                                       <scientific_name>Pristionchus pacificus</scientific_name>
2041                                       <common_name>Parasitic nematode</common_name>
2042                                       <rank>species</rank>
2043                                       <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>
2044                                     </taxonomy>
2045                                   </clade>
2046                                 </clade>
2047                                 <clade>
2048                                   <taxonomy>
2049                                     <id provider="uniprot">6296</id>
2050                                     <scientific_name>Onchocercidae</scientific_name>
2051                                     <rank>family</rank>
2052                                   </taxonomy>
2053                                   <clade>
2054                                     <taxonomy>
2055                                       <id provider="uniprot">6279</id>
2056                                       <code>BRUMA</code>
2057                                       <scientific_name>Brugia malayi</scientific_name>
2058                                       <common_name>Filarial nematode worm</common_name>
2059                                       <rank>species</rank>
2060                                       <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>
2061                                     </taxonomy>
2062                                   </clade>
2063                                   <clade>
2064                                     <taxonomy>
2065                                       <id provider="uniprot">6293</id>
2066                                       <code>WUCBA</code>
2067                                       <scientific_name>Wuchereria bancrofti</scientific_name>
2068                                       <rank>species</rank>
2069                                       <uri>http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG</uri>
2070                                     </taxonomy>
2071                                   </clade>
2072                                 </clade>
2073                               </clade>
2074                               <clade>
2075                                 <taxonomy>
2076                                   <id provider="uniprot">6334</id>
2077                                   <code>TRISP</code>
2078                                   <scientific_name>Trichinella spiralis</scientific_name>
2079                                   <common_name>Trichina worm</common_name>
2080                                   <rank>species</rank>
2081                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG</uri>
2082                                 </taxonomy>
2083                               </clade>
2084                             </clade>
2085                           </clade>
2086                           <clade>
2087                             <taxonomy>
2088                               <id provider="uniprot">1206795</id>
2089                               <scientific_name>Lophotrochozoa</scientific_name>
2090                             </taxonomy>
2091                             <clade>
2092                               <name>Annelida &amp; Mollusca</name>
2093                               <clade>
2094                                 <taxonomy>
2095                                   <id provider="uniprot">6447</id>
2096                                   <scientific_name>Mollusca</scientific_name>
2097                                   <rank>phylum</rank>
2098                                 </taxonomy>
2099                                 <clade>
2100                                   <taxonomy>
2101                                     <id provider="uniprot">6448</id>
2102                                     <scientific_name>Gastropoda</scientific_name>
2103                                     <rank>class</rank>
2104                                   </taxonomy>
2105                                   <clade>
2106                                     <taxonomy>
2107                                       <id provider="uniprot">6500</id>
2108                                       <code>APLCA</code>
2109                                       <scientific_name>Aplysia californica</scientific_name>
2110                                       <common_name>California sea hare</common_name>
2111                                       <rank>species</rank>
2112                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
2113                                     </taxonomy>
2114                                   </clade>
2115                                   <clade>
2116                                     <taxonomy>
2117                                       <id provider="uniprot">225164</id>
2118                                       <code>LOTGI</code>
2119                                       <scientific_name>Lottia gigantea</scientific_name>
2120                                       <common_name>Owl limpet</common_name>
2121                                       <rank>species</rank>
2122                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
2123                                     </taxonomy>
2124                                   </clade>
2125                                 </clade>
2126                                 <clade>
2127                                   <taxonomy>
2128                                     <id provider="uniprot">6545</id>
2129                                     <scientific_name>Pteriomorphia</scientific_name>
2130                                     <synonym>Pteriomorpha</synonym>
2131                                     <rank>subclass</rank>
2132                                   </taxonomy>
2133                                   <clade>
2134                                     <taxonomy>
2135                                       <id provider="uniprot">29159</id>
2136                                       <code>CRAGI</code>
2137                                       <scientific_name>Crassostrea gigas</scientific_name>
2138                                       <authority>Thunberg, 1793</authority>
2139                                       <common_name>Pacific oyster</common_name>
2140                                       <synonym>Crassotrea gigas</synonym>
2141                                       <synonym>Crassostrea angulata</synonym>
2142                                       <synonym>Ostrea gigas</synonym>
2143                                       <rank>species</rank>
2144                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
2145                                     </taxonomy>
2146                                   </clade>
2147                                   <clade>
2148                                     <taxonomy>
2149                                       <id provider="uniprot">50426</id>
2150                                       <code>PINFU</code>
2151                                       <scientific_name>Pinctada fucata</scientific_name>
2152                                       <common_name>Pearl oyster</common_name>
2153                                       <rank>species</rank>
2154                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>
2155                                     </taxonomy>
2156                                   </clade>
2157                                 </clade>
2158                               </clade>
2159                               <clade>
2160                                 <taxonomy>
2161                                   <id provider="uniprot">6340</id>
2162                                   <scientific_name>Annelida</scientific_name>
2163                                   <rank>phylum</rank>
2164                                 </taxonomy>
2165                                 <clade>
2166                                   <taxonomy>
2167                                     <id provider="uniprot">283909</id>
2168                                     <code>CTEXX</code>
2169                                     <scientific_name>Capitella teleta</scientific_name>
2170                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
2171                                     <synonym>Capitella sp. I</synonym>
2172                                     <rank>species</rank>
2173                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
2174                                   </taxonomy>
2175                                 </clade>
2176                                 <clade>
2177                                   <taxonomy>
2178                                     <id provider="uniprot">6412</id>
2179                                     <code>HELRO</code>
2180                                     <scientific_name>Helobdella robusta</scientific_name>
2181                                     <common_name>Californian leech</common_name>
2182                                     <rank>species</rank>
2183                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
2184                                   </taxonomy>
2185                                 </clade>
2186                               </clade>
2187                             </clade>
2188                             <clade>
2189                               <taxonomy>
2190                                 <id provider="uniprot">6157</id>
2191                                 <scientific_name>Platyhelminthes</scientific_name>
2192                                 <rank>phylum</rank>
2193                               </taxonomy>
2194                               <clade>
2195                                 <taxonomy>
2196                                   <scientific_name>Neodermata</scientific_name>
2197                                 </taxonomy>
2198                                 <clade>
2199                                   <taxonomy>
2200                                     <id provider="uniprot">6179</id>
2201                                     <scientific_name>Digenea</scientific_name>
2202                                     <common_name>flukes</common_name>
2203                                     <rank>subclass</rank>
2204                                   </taxonomy>
2205                                   <clade>
2206                                     <taxonomy>
2207                                       <id provider="uniprot">6183</id>
2208                                       <code>SCHMA</code>
2209                                       <scientific_name>Schistosoma mansoni</scientific_name>
2210                                       <common_name>Blood fluke</common_name>
2211                                       <rank>species</rank>
2212                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>
2213                                     </taxonomy>
2214                                   </clade>
2215                                   <clade>
2216                                     <taxonomy>
2217                                       <id provider="uniprot">79923</id>
2218                                       <code>CLOSI</code>
2219                                       <scientific_name>Clonorchis sinensi</scientific_name>
2220                                       <authority>Cobbold, 1875</authority>
2221                                       <common_name>Chinese liver fluke</common_name>
2222                                       <rank>species</rank>
2223                                       <uri>http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg</uri>
2224                                     </taxonomy>
2225                                   </clade>
2226                                 </clade>
2227                                 <clade>
2228                                   <taxonomy>
2229                                     <id provider="uniprot">6211</id>
2230                                     <code>ECHMU</code>
2231                                     <scientific_name>Echinococcus multilocularis</scientific_name>
2232                                     <rank>species</rank>
2233                                     <uri>http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg</uri>
2234                                   </taxonomy>
2235                                 </clade>
2236                               </clade>
2237                               <clade>
2238                                 <taxonomy>
2239                                   <id provider="uniprot">79327</id>
2240                                   <code>SCHMD</code>
2241                                   <scientific_name>Schmidtea mediterranea</scientific_name>
2242                                   <common_name>Freshwater planarian flatworm</common_name>
2243                                   <rank>species</rank>
2244                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>
2245                                 </taxonomy>
2246                               </clade>
2247                             </clade>
2248                           </clade>
2249                         </clade>
2250                       </clade>
2251                       <clade>
2252                         <name>Cnidaria</name>
2253                         <taxonomy>
2254                           <id provider="uniprot">6073</id>
2255                           <scientific_name>Cnidaria</scientific_name>
2256                           <rank>phylum</rank>
2257                         </taxonomy>
2258                         <clade>
2259                           <taxonomy>
2260                             <id provider="uniprot">6102</id>
2261                             <scientific_name>Hexacorallia</scientific_name>
2262                             <synonym>Ceriantipatharia</synonym>
2263                             <synonym>Zoantharia</synonym>
2264                             <rank>subclass</rank>
2265                           </taxonomy>
2266                           <clade>
2267                             <taxonomy>
2268                               <id provider="uniprot">70779</id>
2269                               <code>ACRDI</code>
2270                               <scientific_name>Acropora digitifera</scientific_name>
2271                               <common_name>Staghorn coral</common_name>
2272                               <rank>species</rank>
2273                               <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
2274                             </taxonomy>
2275                           </clade>
2276                           <clade>
2277                             <taxonomy>
2278                               <id provider="uniprot">45351</id>
2279                               <code>NEMVE</code>
2280                               <scientific_name>Nematostella vectensis</scientific_name>
2281                               <common_name>Starlet sea anemone</common_name>
2282                               <rank>species</rank>
2283                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>
2284                             </taxonomy>
2285                           </clade>
2286                         </clade>
2287                         <clade>
2288                           <taxonomy>
2289                             <id provider="uniprot">6085</id>
2290                             <code>HMAXX</code>
2291                             <scientific_name>Hydra magnipapillata</scientific_name>
2292                             <authority>Ito, 1947</authority>
2293                             <rank>species</rank>
2294                             <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>
2295                           </taxonomy>
2296                         </clade>
2297                       </clade>
2298                     </clade>
2299                     <clade>
2300                       <taxonomy>
2301                         <id provider="uniprot">10228</id>
2302                         <code>TRIAD</code>
2303                         <scientific_name>Trichoplax adhaerens</scientific_name>
2304                         <synonym>Trichoplax reptans</synonym>
2305                         <rank>species</rank>
2306                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>
2307                       </taxonomy>
2308                       <reference doi="10.1073/pnas.0602076103">
2309                       </reference>
2310                     </clade>
2311                   </clade>
2312                   <clade>
2313                     <taxonomy>
2314                       <id provider="uniprot">27923</id>
2315                       <code>MNELE</code>
2316                       <scientific_name>Mnemiopsis leidyi</scientific_name>
2317                       <authority>A. gassiz, 1865</authority>
2318                       <common_name>Sea walnut</common_name>
2319                       <synonym>Warty comb jellyfish</synonym>
2320                       <rank>species</rank>
2321                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>
2322                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>
2323                     </taxonomy>
2324                   </clade>
2325                   <clade>
2326                     <taxonomy>
2327                       <id provider="uniprot">400682</id>
2328                       <code>AMPQE</code>
2329                       <scientific_name>Amphimedon queenslandica</scientific_name>
2330                       <authority>Hooper &amp; Van Soest, 2006</authority>
2331                       <common_name>Sponge</common_name>
2332                       <synonym>Reniera sp. JGI-2005</synonym>
2333                       <rank>species</rank>
2334                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>
2335                     </taxonomy>
2336                   </clade>
2337                 </clade>
2338                 <clade>
2339                   <taxonomy>
2340                     <id provider="uniprot">81524</id>
2341                     <scientific_name>Codonosigidae</scientific_name>
2342                     <rank>family</rank>
2343                   </taxonomy>
2344                   <clade>
2345                     <taxonomy>
2346                       <id provider="uniprot">81824</id>
2347                       <code>MONBE</code>
2348                       <scientific_name>Monosiga brevicollis</scientific_name>
2349                       <common_name>Choanoflagellate</common_name>
2350                       <rank>species</rank>
2351                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>
2352                     </taxonomy>
2353                   </clade>
2354                   <clade>
2355                     <taxonomy>
2356                       <id provider="uniprot">946362</id>
2357                       <code>SALS5</code>
2358                       <scientific_name>Salpingoeca rosetta</scientific_name>
2359                       <synonym>Proterospongia sp. ATCC 50818</synonym>
2360                       <synonym>Salpingoeca sp. ATCC 50818</synonym>
2361                       <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>
2362                       <rank>species</rank>
2363                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>
2364                     </taxonomy>
2365                   </clade>
2366                 </clade>
2367               </clade>
2368               <clade>
2369                 <name>Ichthyophonida &amp; Filasterea</name>
2370                 <clade>
2371                   <taxonomy>
2372                     <id provider="uniprot">198625</id>
2373                     <scientific_name>Ichthyophonida</scientific_name>
2374                     <rank>order</rank>
2375                   </taxonomy>
2376                   <clade>
2377                     <taxonomy>
2378                       <id provider="uniprot">4881</id>
2379                       <code>AMOPA</code>
2380                       <scientific_name>Amoebidium parasiticum</scientific_name>
2381                       <rank>species</rank>
2382                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>
2383                     </taxonomy>
2384                   </clade>
2385                   <clade>
2386                     <taxonomy>
2387                       <id provider="uniprot">72019</id>
2388                       <code>SARXX</code>
2389                       <scientific_name>Sphaeroforma arctica</scientific_name>
2390                       <rank>species</rank>
2391                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
2392                     </taxonomy>
2393                   </clade>
2394                 </clade>
2395                 <clade>
2396                   <taxonomy>
2397                     <scientific_name>Filasterea</scientific_name>
2398                   </taxonomy>
2399                   <reference doi="10.1371/journal.pone.0002098">
2400                   </reference>
2401                   <reference>
2402                   </reference>
2403                   <clade>
2404                     <taxonomy>
2405                       <id provider="uniprot">595528</id>
2406                       <code>CAPO3</code>
2407                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>
2408                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>
2409                     </taxonomy>
2410                   </clade>
2411                   <clade>
2412                     <taxonomy>
2413                       <id provider="uniprot">134558</id>
2414                       <scientific_name>Ministeria vibrans</scientific_name>
2415                       <rank>species</rank>
2416                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>
2417                     </taxonomy>
2418                   </clade>
2419                 </clade>
2420               </clade>
2421             </clade>
2422             <clade>
2423               <taxonomy>
2424                 <scientific_name>Holomycota</scientific_name>
2425                 <synonym>Nucletmycea</synonym>
2426               </taxonomy>
2427               <reference doi="10.1186/1471-2148-9-272">
2428                 <desc>Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support</desc>
2429               </reference>
2430               <clade>
2431                 <taxonomy>
2432                   <id provider="uniprot">4751</id>
2433                   <scientific_name>Fungi</scientific_name>
2434                   <rank>kingdom</rank>
2435                 </taxonomy>
2436                 <reference doi="10.1186/1741-7007-10-47">
2437                   <desc>Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi</desc>
2438                 </reference>
2439                 <clade>
2440                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
2441                   <clade>
2442                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
2443                     <clade>
2444                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
2445                       <clade>
2446                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
2447                         <clade>
2448                           <name>Dikarya &amp; Mucoromycotina</name>
2449                           <clade>
2450                             <taxonomy>
2451                               <id provider="uniprot">451864</id>
2452                               <scientific_name>Dikarya</scientific_name>
2453                               <rank>subkingdom</rank>
2454                             </taxonomy>
2455                             <reference doi="10.1038/nature05110">
2456                             </reference>
2457                             <reference>
2458                             </reference>
2459                             <clade>
2460                               <taxonomy>
2461                                 <id provider="uniprot">4890</id>
2462                                 <scientific_name>Ascomycota</scientific_name>
2463                                 <rank>phylum</rank>
2464                               </taxonomy>
2465                               <clade>
2466                                 <name>Pezizomycotina &amp; Saccharomycetales</name>
2467                                 <clade>
2468                                   <taxonomy>
2469                                     <id provider="uniprot">147538</id>
2470                                     <scientific_name>Pezizomycotina</scientific_name>
2471                                     <synonym>Euascomycota</synonym>
2472                                     <rank>subphylum</rank>
2473                                   </taxonomy>
2474                                   <reference doi="0.3852/mycologia.98.6.1018">
2475                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>
2476                                   </reference>
2477                                   <reference>
2478                                   </reference>
2479                                   <clade>
2480                                     <taxonomy>
2481                                       <id provider="uniprot">716546</id>
2482                                       <scientific_name>Leotiomyceta</scientific_name>
2483                                     </taxonomy>
2484                                     <clade>
2485                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
2486                                       <clade>
2487                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
2488                                         <clade>
2489                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>
2490                                           <clade>
2491                                             <taxonomy>
2492                                               <id provider="uniprot">715989</id>
2493                                               <scientific_name>Sordariomyceta</scientific_name>
2494                                             </taxonomy>
2495                                             <clade>
2496                                               <taxonomy>
2497                                                 <id provider="uniprot">147550</id>
2498                                                 <scientific_name>Sordariomycetes</scientific_name>
2499                                                 <rank>class</rank>
2500                                               </taxonomy>
2501                                               <clade>
2502                                                 <name>Magnaporthales &amp; Hypocreales</name>
2503                                                 <clade>
2504                                                   <taxonomy>
2505                                                     <id provider="uniprot">5125</id>
2506                                                     <scientific_name>Hypocreales</scientific_name>
2507                                                     <rank>order</rank>
2508                                                   </taxonomy>
2509                                                   <clade>
2510                                                     <taxonomy>
2511                                                       <id provider="uniprot">398408</id>
2512                                                       <code>AALXX</code>
2513                                                       <scientific_name>Acremonium alcalophilum</scientific_name>
2514                                                       <rank>species</rank>
2515                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
2516                                                     </taxonomy>
2517                                                   </clade>
2518                                                   <clade>
2519                                                     <taxonomy>
2520                                                       <id provider="uniprot">229533</id>
2521                                                       <code>GIBZE</code>
2522                                                       <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>
2523                                                       <common_name>Wheat head blight fungus</common_name>
2524                                                       <synonym>Fusarium graminearum</synonym>
2525                                                       <synonym>Gibberella zeae PH-1</synonym>
2526                                                       <rank>strain</rank>
2527                                                       <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>
2528                                                     </taxonomy>
2529                                                   </clade>
2530                                                   <clade>
2531                                                     <taxonomy>
2532                                                       <id provider="uniprot">413071</id>
2533                                                       <code>HYPVG</code>
2534                                                       <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>
2535                                                       <common_name>Gliocladium virens</common_name>
2536                                                       <synonym>Trichoderma virens</synonym>
2537                                                       <synonym>Gliocladium flavofuscum</synonym>
2538                                                       <synonym>Trichoderma virens Gv29-8</synonym>
2539                                                       <synonym>Gliocladium virens</synonym>
2540                                                       <rank>strain</rank>
2541                                                       <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>
2542                                                     </taxonomy>
2543                                                   </clade>
2544                                                 </clade>
2545                                                 <clade>
2546                                                   <taxonomy>
2547                                                     <id provider="uniprot">148305</id>
2548                                                     <code>MAGGR</code>
2549                                                     <scientific_name>Magnaporthe grisea</scientific_name>
2550                                                     <common_name>Rice blast fungus</common_name>
2551                                                     <synonym>Pyricularia grisea</synonym>
2552                                                     <rank>species</rank>
2553                                                     <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>
2554                                                   </taxonomy>
2555                                                 </clade>
2556                                               </clade>
2557                                               <clade>
2558                                                 <taxonomy>
2559                                                   <id provider="uniprot">5139</id>
2560                                                   <scientific_name>Sordariales</scientific_name>
2561                                                   <rank>order</rank>
2562                                                 </taxonomy>
2563                                                 <clade>
2564                                                   <taxonomy>
2565                                                     <id provider="uniprot">35718</id>
2566                                                     <scientific_name>Chaetomiaceae</scientific_name>
2567                                                     <rank>family</rank>
2568                                                   </taxonomy>
2569                                                   <clade>
2570                                                     <taxonomy>
2571                                                       <id provider="uniprot">35719</id>
2572                                                       <scientific_name>Thielavia</scientific_name>
2573                                                       <rank>genus</rank>
2574                                                     </taxonomy>
2575                                                     <clade>
2576                                                       <taxonomy>
2577                                                         <id provider="uniprot">573729</id>
2578                                                         <code>THIHA</code>
2579                                                         <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>
2580                                                         <authority>(Apinis) Oorschot 1977</authority>
2581                                                         <synonym>Sporotrichum thermophilum</synonym>
2582                                                         <synonym>Myceliophthora thermophila</synonym>
2583                                                         <rank>species</rank>
2584                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
2585                                                       </taxonomy>
2586                                                     </clade>
2587                                                     <clade>
2588                                                       <taxonomy>
2589                                                         <id provider="uniprot">578455</id>
2590                                                         <code>THITE</code>
2591                                                         <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>
2592                                                         <synonym>Acremonium alabamense</synonym>
2593                                                         <synonym>Thielavia terrestris NRRL 8126</synonym>
2594                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
2595                                                       </taxonomy>
2596                                                     </clade>
2597                                                   </clade>
2598                                                   <clade>
2599                                                     <taxonomy>
2600                                                       <id provider="uniprot">306901</id>
2601                                                       <code>CHAGB</code>
2602                                                       <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>
2603                                                       <authority>Kunze 1817</authority>
2604                                                       <common_name>Soil fungus</common_name>
2605                                                       <rank>strain</rank>
2606                                                     </taxonomy>
2607                                                   </clade>
2608                                                 </clade>
2609                                                 <clade>
2610                                                   <taxonomy>
2611                                                     <id provider="uniprot">367110</id>
2612                                                     <code>NEUCR</code>
2613                                                     <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>
2614                                                     <rank>strain</rank>
2615                                                   </taxonomy>
2616                                                 </clade>
2617                                               </clade>
2618                                             </clade>
2619                                             <clade>
2620                                               <taxonomy>
2621                                                 <id provider="uniprot">147548</id>
2622                                                 <scientific_name>Leotiomycetes</scientific_name>
2623                                                 <rank>class</rank>
2624                                               </taxonomy>
2625                                               <clade>
2626                                                 <taxonomy>
2627                                                   <id provider="uniprot">28983</id>
2628                                                   <scientific_name>Sclerotiniaceae</scientific_name>
2629                                                   <rank>family</rank>
2630                                                 </taxonomy>
2631                                                 <clade>
2632                                                   <taxonomy>
2633                                                     <id provider="uniprot">999810</id>
2634                                                     <code>BOTF4</code>
2635                                                     <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>
2636                                                     <common_name>Noble rot fungus</common_name>
2637                                                     <synonym>Botrytis cinerea</synonym>
2638                                                     <rank>strain</rank>
2639                                                   </taxonomy>
2640                                                 </clade>
2641                                                 <clade>
2642                                                   <taxonomy>
2643                                                     <id provider="uniprot">665079</id>
2644                                                     <code>SCLS1</code>
2645                                                     <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>
2646                                                     <common_name>White mold</common_name>
2647                                                     <synonym>Whetzelinia sclerotiorum</synonym>
2648                                                     <rank>strain</rank>
2649                                                   </taxonomy>
2650                                                 </clade>
2651                                               </clade>
2652                                               <clade>
2653                                                 <taxonomy>
2654                                                   <id provider="uniprot">78148</id>
2655                                                   <scientific_name>Oidiodendron maius</scientific_name>
2656                                                   <rank>species</rank>
2657                                                 </taxonomy>
2658                                               </clade>
2659                                             </clade>
2660                                           </clade>
2661                                           <clade>
2662                                             <taxonomy>
2663                                               <id provider="uniprot">388435</id>
2664                                               <scientific_name>Lecanoromycetidae</scientific_name>
2665                                               <rank>subclass</rank>
2666                                             </taxonomy>
2667                                             <clade>
2668                                               <taxonomy>
2669                                                 <id provider="uniprot">27339</id>
2670                                                 <scientific_name>Cladonia grayi</scientific_name>
2671                                                 <synonym>Cladonia grayi Merr</synonym>
2672                                                 <rank>species</rank>
2673                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
2674                                               </taxonomy>
2675                                             </clade>
2676                                             <clade>
2677                                               <taxonomy>
2678                                                 <id provider="uniprot">107463</id>
2679                                                 <scientific_name>Xanthoria parietina</scientific_name>
2680                                                 <rank>species</rank>
2681                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
2682                                               </taxonomy>
2683                                             </clade>
2684                                           </clade>
2685                                         </clade>
2686                                         <clade>
2687                                           <taxonomy>
2688                                             <id provider="uniprot">147541</id>
2689                                             <scientific_name>Dothideomycetes</scientific_name>
2690                                             <common_name>bitunicate ascomycetes</common_name>
2691                                             <rank>class</rank>
2692                                           </taxonomy>
2693                                           <reference doi="10.3114/sim.2009.64.01">
2694                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
2695                                           </reference>
2696                                           <clade>
2697                                             <taxonomy>
2698                                               <id provider="uniprot">451867</id>
2699                                               <scientific_name>Dothideomycetidae</scientific_name>
2700                                               <rank>subclass</rank>
2701                                             </taxonomy>
2702                                             <reference doi="10.3852/mycologia.98.6.1041">
2703                                               <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>
2704                                             </reference>
2705                                             <reference>
2706                                             </reference>
2707                                             <reference>
2708                                             </reference>
2709                                             <clade>
2710                                               <taxonomy>
2711                                                 <id provider="uniprot">134362</id>
2712                                                 <scientific_name>Capnodiales</scientific_name>
2713                                                 <rank>order</rank>
2714                                               </taxonomy>
2715                                               <clade>
2716                                                 <taxonomy>
2717                                                   <id provider="uniprot">41254</id>
2718                                                   <scientific_name>Mycosphaerella</scientific_name>
2719                                                   <rank>genus</rank>
2720                                                 </taxonomy>
2721                                                 <clade>
2722                                                   <taxonomy>
2723                                                     <id provider="uniprot">83344</id>
2724                                                     <code>PFIXX</code>
2725                                                     <scientific_name>Pseudocercospora fijiensis</scientific_name>
2726                                                     <synonym>Mycosphaerella fijiensis</synonym>
2727                                                     <rank>species</rank>
2728                                                   </taxonomy>
2729                                                 </clade>
2730                                                 <clade>
2731                                                   <taxonomy>
2732                                                     <id provider="uniprot">336722</id>
2733                                                     <code>MYCGM</code>
2734                                                     <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>
2735                                                     <common_name>Speckled leaf blotch fungus</common_name>
2736                                                     <synonym>Zymoseptoria tritici IPO323</synonym>
2737                                                     <synonym>Mycosphaerella graminicola IPO323</synonym>
2738                                                     <synonym>Septoria tritici</synonym>
2739                                                     <rank>strain</rank>
2740                                                   </taxonomy>
2741                                                 </clade>
2742                                                 <clade>
2743                                                   <taxonomy>
2744                                                     <id provider="uniprot">64363</id>
2745                                                     <code>MYCPJ</code>
2746                                                     <scientific_name>Mycosphaerella pini</scientific_name>
2747                                                     <common_name>Red band needle blight disease fungus</common_name>
2748                                                     <synonym>Dothistroma septosporum</synonym>
2749                                                     <synonym>Dothistroma pini</synonym>
2750                                                     <rank>species</rank>
2751                                                   </taxonomy>
2752                                                 </clade>
2753                                                 <clade>
2754                                                   <taxonomy>
2755                                                     <id provider="uniprot">692275</id>
2756                                                     <code>MPSXX</code>
2757                                                     <scientific_name>Mycosphaerella populorum SO2202</scientific_name>
2758                                                     <synonym>Septoria musiva SO2202</synonym>
2759                                                     <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>
2760                                                   </taxonomy>
2761                                                 </clade>
2762                                               </clade>
2763                                               <clade>
2764                                                 <taxonomy>
2765                                                   <id provider="uniprot">430998</id>
2766                                                   <code>BCOXX</code>
2767                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
2768                                                   <common_name>Angels&apos; Share fungus</common_name>
2769                                                   <synonym>Torula compniacensis</synonym>
2770                                                   <rank>species</rank>
2771                                                   <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>
2772                                                 </taxonomy>
2773                                               </clade>
2774                                             </clade>
2775                                             <clade>
2776                                               <taxonomy>
2777                                                 <id provider="uniprot">5580</id>
2778                                                 <code>AURPU</code>
2779                                                 <scientific_name>Aureobasidium pullulans</scientific_name>
2780                                                 <common_name>Black yeast</common_name>
2781                                                 <synonym>Pullularia pullulans</synonym>
2782                                                 <rank>species</rank>
2783                                               </taxonomy>
2784                                               <clade>
2785                                                 <taxonomy>
2786                                                   <id provider="uniprot">178873</id>
2787                                                   <code>APPXX</code>
2788                                                   <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>
2789                                                   <rank>varietas</rank>
2790                                                 </taxonomy>
2791                                               </clade>
2792                                               <clade>
2793                                                 <taxonomy>
2794                                                   <id provider="uniprot">46634</id>
2795                                                   <code>APMXX</code>
2796                                                   <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>
2797                                                   <rank>varietas</rank>
2798                                                   <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>
2799                                                 </taxonomy>
2800                                               </clade>
2801                                               <clade>
2802                                                 <taxonomy>
2803                                                   <id provider="uniprot">1042127</id>
2804                                                   <code>APSXX</code>
2805                                                   <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>
2806                                                   <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>
2807                                                   <rank>varietas</rank>
2808                                                 </taxonomy>
2809                                               </clade>
2810                                             </clade>
2811                                           </clade>
2812                                           <clade>
2813                                             <taxonomy>
2814                                               <id provider="uniprot">715340</id>
2815                                               <scientific_name>Pleosporineae</scientific_name>
2816                                               <rank>suborder</rank>
2817                                             </taxonomy>
2818                                             <clade>
2819                                               <taxonomy>
2820                                                 <id provider="uniprot">28556</id>
2821                                                 <scientific_name>Pleosporaceae</scientific_name>
2822                                                 <rank>family</rank>
2823                                               </taxonomy>
2824                                               <clade>
2825                                                 <name>Cochliobolus &amp; Setosphaeria</name>
2826                                                 <clade>
2827                                                   <taxonomy>
2828                                                     <id provider="uniprot">45130</id>
2829                                                     <code>COCSA</code>
2830                                                     <scientific_name>Cochliobolus sativus</scientific_name>
2831                                                     <synonym>Bipolaris sorokiniana</synonym>
2832                                                     <rank>species</rank>
2833                                                     <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2834                                                   </taxonomy>
2835                                                 </clade>
2836                                                 <clade>
2837                                                   <taxonomy>
2838                                                     <id provider="uniprot">93612</id>
2839                                                     <code>SETTU</code>
2840                                                     <scientific_name>Setosphaeria turcica</scientific_name>
2841                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2842                                                     <common_name>Northern corn leaf blight disease fungus</common_name>
2843                                                     <synonym>Exserohilum turcicum</synonym>
2844                                                     <synonym>Helminthosporium turcicum</synonym>
2845                                                     <rank>species</rank>
2846                                                   </taxonomy>
2847                                                 </clade>
2848                                               </clade>
2849                                               <clade>
2850                                                 <taxonomy>
2851                                                   <id provider="uniprot">426418</id>
2852                                                   <code>PYRTR</code>
2853                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2854                                                   <common_name>Wheat tan spot fungus</common_name>
2855                                                   <synonym>Drechslera tritici-repentis</synonym>
2856                                                   <rank>strain</rank>
2857                                                 </taxonomy>
2858                                               </clade>
2859                                             </clade>
2860                                             <clade>
2861                                               <taxonomy>
2862                                                 <id provider="uniprot">321614</id>
2863                                                 <code>PHANO</code>
2864                                                 <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>
2865                                                 <common_name>Glume blotch fungus</common_name>
2866                                                 <synonym>Septoria nodorum</synonym>
2867                                                 <rank>strain</rank>
2868                                               </taxonomy>
2869                                             </clade>
2870                                           </clade>
2871                                         </clade>
2872                                       </clade>
2873                                       <clade>
2874                                         <taxonomy>
2875                                           <id provider="uniprot">28568</id>
2876                                           <scientific_name>Trichocomaceae</scientific_name>
2877                                           <rank>family</rank>
2878                                         </taxonomy>
2879                                         <clade>
2880                                           <taxonomy>
2881                                             <id provider="uniprot">5052</id>
2882                                             <scientific_name>Aspergillus</scientific_name>
2883                                             <rank>genus</rank>
2884                                           </taxonomy>
2885                                           <clade>
2886                                             <taxonomy>
2887                                               <id provider="uniprot">332952</id>
2888                                               <code>ASPFN</code>
2889                                               <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>
2890                                               <synonym>Aspergillus flavus NRRL3357</synonym>
2891                                               <rank>strain</rank>
2892                                               <uri>http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg</uri>
2893                                             </taxonomy>
2894                                           </clade>
2895                                           <clade>
2896                                             <taxonomy>
2897                                               <id provider="uniprot">425011</id>
2898                                               <code>ASPNC</code>
2899                                               <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>
2900                                               <synonym>Aspergillus niger CBS 513.88</synonym>
2901                                               <rank>strain</rank>
2902                                               <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>
2903                                             </taxonomy>
2904                                           </clade>
2905                                           <clade>
2906                                             <taxonomy>
2907                                               <id provider="uniprot">344612</id>
2908                                               <code>ASPCL</code>
2909                                               <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>
2910                                               <synonym>Aspergillus clavatus NRRL 1</synonym>
2911                                             </taxonomy>
2912                                           </clade>
2913                                         </clade>
2914                                         <clade>
2915                                           <name>Neosartorya &amp; Emericella</name>
2916                                           <clade>
2917                                             <taxonomy>
2918                                               <id provider="uniprot">227321</id>
2919                                               <code>EMENI</code>
2920                                               <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>
2921                                               <authority>Vuill. 1927</authority>
2922                                               <synonym>Aspergillus nidulans</synonym>
2923                                               <rank>strain</rank>
2924                                             </taxonomy>
2925                                           </clade>
2926                                           <clade>
2927                                             <taxonomy>
2928                                               <id provider="uniprot">331117</id>
2929                                               <code>NEOFI</code>
2930                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2931                                               <synonym>Aspergillus fischerianus</synonym>
2932                                               <rank>strain</rank>
2933                                             </taxonomy>
2934                                           </clade>
2935                                         </clade>
2936                                       </clade>
2937                                     </clade>
2938                                     <clade>
2939                                       <taxonomy>
2940                                         <id provider="uniprot">33183</id>
2941                                         <scientific_name>Onygenales</scientific_name>
2942                                         <rank>order</rank>
2943                                       </taxonomy>
2944                                       <reference>
2945                                         <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>
2946                                       </reference>
2947                                       <reference>
2948                                       </reference>
2949                                       <clade>
2950                                         <name>mitosporic Onygenales &amp; Onygenaceae</name>
2951                                         <clade>
2952                                           <taxonomy>
2953                                             <id provider="uniprot">246410</id>
2954                                             <code>COCIM</code>
2955                                             <scientific_name>Coccidioides immitis (strain RS)</scientific_name>
2956                                             <common_name>Valley fever fungus</common_name>
2957                                             <synonym>Coccidioides immitis RS</synonym>
2958                                           </taxonomy>
2959                                         </clade>
2960                                         <clade>
2961                                           <taxonomy>
2962                                             <id provider="uniprot">336963</id>
2963                                             <code>UNCRE</code>
2964                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2965                                             <rank>strain</rank>
2966                                           </taxonomy>
2967                                         </clade>
2968                                       </clade>
2969                                       <clade>
2970                                         <taxonomy>
2971                                           <id provider="uniprot">447093</id>
2972                                           <code>AJECG</code>
2973                                           <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>
2974                                           <common_name>Darling&apos;s disease fungus</common_name>
2975                                           <synonym>Histoplasma capsulatum</synonym>
2976                                         </taxonomy>
2977                                       </clade>
2978                                     </clade>
2979                                   </clade>
2980                                   <clade>
2981                                     <taxonomy>
2982                                       <id provider="uniprot">656061</id>
2983                                       <code>TUBMM</code>
2984                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2985                                       <common_name>Perigord black truffle</common_name>
2986                                       <synonym>Tuber melanosporum Mel28</synonym>
2987                                       <rank>strain</rank>
2988                                       <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>
2989                                     </taxonomy>
2990                                   </clade>
2991                                 </clade>
2992                                 <clade>
2993                                   <taxonomy>
2994                                     <id provider="uniprot">4892</id>
2995                                     <scientific_name>Saccharomycetales</scientific_name>
2996                                     <common_name>budding yeasts</common_name>
2997                                     <rank>order</rank>
2998                                   </taxonomy>
2999                                   <reference doi="10.1186/1471-2148-6-99">
3000                                     <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>
3001                                   </reference>
3002                                   <reference>
3003                                   </reference>
3004                                   <clade>
3005                                     <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>
3006                                     <clade>
3007                                       <taxonomy>
3008                                         <id provider="uniprot">4893</id>
3009                                         <scientific_name>Saccharomycetaceae</scientific_name>
3010                                         <rank>family</rank>
3011                                       </taxonomy>
3012                                       <clade>
3013                                         <name>Naumovozyma &amp; Saccharomyces</name>
3014                                         <clade>
3015                                           <taxonomy>
3016                                             <id provider="uniprot">1064592</id>
3017                                             <code>NAUCC</code>
3018                                             <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>
3019                                             <common_name>Yeast</common_name>
3020                                             <synonym>Saccharomyces castellii</synonym>
3021                                             <rank>strain</rank>
3022                                           </taxonomy>
3023                                         </clade>
3024                                         <clade>
3025                                           <taxonomy>
3026                                             <id provider="uniprot">559292</id>
3027                                             <code>YEAST</code>
3028                                             <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>
3029                                             <common_name>Baker&apos;s yeast</common_name>
3030                                             <rank>strain</rank>
3031                                           </taxonomy>
3032                                         </clade>
3033                                       </clade>
3034                                       <clade>
3035                                         <name>Eremothecium &amp; Kluyveromyces</name>
3036                                         <clade>
3037                                           <taxonomy>
3038                                             <id provider="uniprot">284590</id>
3039                                             <code>KLULA</code>
3040                                             <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>
3041                                             <common_name>Yeast</common_name>
3042                                             <synonym>Candida sphaerica</synonym>
3043                                             <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>
3044                                           </taxonomy>
3045                                         </clade>
3046                                         <clade>
3047                                           <taxonomy>
3048                                             <id provider="uniprot">284811</id>
3049                                             <code>ASHGO</code>
3050                                             <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>
3051                                             <common_name>Yeast</common_name>
3052                                             <synonym>Eremothecium gossypii</synonym>
3053                                           </taxonomy>
3054                                         </clade>
3055                                       </clade>
3056                                     </clade>
3057                                     <clade>
3058                                       <name>Debaryomyces &amp; Candida</name>
3059                                       <clade>
3060                                         <taxonomy>
3061                                           <id provider="uniprot">5475</id>
3062                                           <scientific_name>Candida</scientific_name>
3063                                           <synonym>Torulopsis</synonym>
3064                                           <rank>genus</rank>
3065                                         </taxonomy>
3066                                         <clade>
3067                                           <taxonomy>
3068                                             <id provider="uniprot">237561</id>
3069                                             <code>CANAL</code>
3070                                             <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>
3071                                             <common_name>Yeast</common_name>
3072                                             <rank>strain</rank>
3073                                           </taxonomy>
3074                                         </clade>
3075                                         <clade>
3076                                           <taxonomy>
3077                                             <id provider="uniprot">294747</id>
3078                                             <code>CANTT</code>
3079                                             <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>
3080                                             <common_name>Yeast</common_name>
3081                                             <rank>strain</rank>
3082                                           </taxonomy>
3083                                         </clade>
3084                                       </clade>
3085                                       <clade>
3086                                         <taxonomy>
3087                                           <id provider="uniprot">284592</id>
3088                                           <code>DEBHA</code>
3089                                           <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>
3090                                           <common_name>Yeast</common_name>
3091                                           <synonym>Torulaspora hansenii</synonym>
3092                                           <synonym>Debaryomyces hansenii CBS767</synonym>
3093                                         </taxonomy>
3094                                       </clade>
3095                                     </clade>
3096                                   </clade>
3097                                   <clade>
3098                                     <taxonomy>
3099                                       <id provider="uniprot">284591</id>
3100                                       <code>YARLI</code>
3101                                       <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>
3102                                       <common_name>Yeast</common_name>
3103                                       <synonym>Candida lipolytica</synonym>
3104                                       <rank>strain</rank>
3105                                     </taxonomy>
3106                                   </clade>
3107                                 </clade>
3108                               </clade>
3109                               <clade>
3110                                 <taxonomy>
3111                                   <id provider="uniprot">451866</id>
3112                                   <scientific_name>Taphrinomycotina</scientific_name>
3113                                   <rank>subphylum</rank>
3114                                 </taxonomy>
3115                                 <clade>
3116                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
3117                                   <clade>
3118                                     <taxonomy>
3119                                       <id provider="uniprot">4895</id>
3120                                       <scientific_name>Schizosaccharomyces</scientific_name>
3121                                       <rank>genus</rank>
3122                                     </taxonomy>
3123                                     <clade>
3124                                       <taxonomy>
3125                                         <id provider="uniprot">402676</id>
3126                                         <code>SCHJY</code>
3127                                         <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>
3128                                         <common_name>Fission yeast</common_name>
3129                                         <rank>strain</rank>
3130                                       </taxonomy>
3131                                     </clade>
3132                                     <clade>
3133                                       <taxonomy>
3134                                         <id provider="uniprot">4899</id>
3135                                         <code>SCHOT</code>
3136                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>
3137                                         <common_name>Fission yeast</common_name>
3138                                         <rank>species</rank>
3139                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
3140                                       </taxonomy>
3141                                     </clade>
3142                                     <clade>
3143                                       <taxonomy>
3144                                         <id provider="uniprot">284812</id>
3145                                         <code>SCHPO</code>
3146                                         <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>
3147                                         <common_name>Fission yeast</common_name>
3148                                         <rank>strain</rank>
3149                                       </taxonomy>
3150                                     </clade>
3151                                   </clade>
3152                                   <clade>
3153                                     <taxonomy>
3154                                       <id provider="uniprot">4754</id>
3155                                       <code>PNECA</code>
3156                                       <scientific_name>Pneumocystis carinii</scientific_name>
3157                                       <rank>species</rank>
3158                                     </taxonomy>
3159                                   </clade>
3160                                 </clade>
3161                                 <clade>
3162                                   <taxonomy>
3163                                     <id provider="uniprot">5606</id>
3164                                     <scientific_name>Saitoella complicata</scientific_name>
3165                                     <rank>species</rank>
3166                                   </taxonomy>
3167                                 </clade>
3168                               </clade>
3169                             </clade>
3170                             <clade>
3171                               <taxonomy>
3172                                 <id provider="uniprot">5204</id>
3173                                 <scientific_name>Basidiomycota</scientific_name>
3174                                 <rank>phylum</rank>
3175                               </taxonomy>
3176                               <clade>
3177                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
3178                                 <clade>
3179                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>
3180                                   <clade>
3181                                     <taxonomy>
3182                                       <id provider="uniprot">5302</id>
3183                                       <scientific_name>Agaricomycotina</scientific_name>
3184                                     </taxonomy>
3185                                     <clade>
3186                                       <taxonomy>
3187                                         <id provider="uniprot">155619</id>
3188                                         <scientific_name>Homobasidiomycetes</scientific_name>
3189                                         <rank>class</rank>
3190                                       </taxonomy>
3191                                       <reference doi="10.1098/rspb.2002.2123">
3192                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
3193                                       </reference>
3194                                       <clade>
3195                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
3196                                         <clade>
3197                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>
3198                                           <clade>
3199                                             <taxonomy>
3200                                               <id provider="uniprot">452333</id>
3201                                               <scientific_name>Agaricomycetidae</scientific_name>
3202                                               <rank>subclass</rank>
3203                                             </taxonomy>
3204                                             <clade>
3205                                               <name>Agaricales &amp; Boletales</name>
3206                                               <clade>
3207                                                 <taxonomy>
3208                                                   <id provider="uniprot">5338</id>
3209                                                   <scientific_name>Agaricales</scientific_name>
3210                                                   <rank>order</rank>
3211                                                 </taxonomy>
3212                                                 <clade>
3213                                                   <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
3214                                                   <clade>
3215                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
3216                                                     <clade>
3217                                                       <name>Agaricus &amp; Coprinopsis</name>
3218                                                       <clade>
3219                                                         <taxonomy>
3220                                                           <id provider="uniprot">597362</id>
3221                                                           <code>AGABU</code>
3222                                                           <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>
3223                                                           <common_name>White button mushroom</common_name>
3224                                                           <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>
3225                                                           <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
3226                                                         </taxonomy>
3227                                                       </clade>
3228                                                       <clade>
3229                                                         <taxonomy>
3230                                                           <id provider="uniprot">5346</id>
3231                                                           <code>COPC7</code>
3232                                                           <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>
3233                                                           <common_name>Inky cap fungus</common_name>
3234                                                           <synonym>Hormographiella aspergillata</synonym>
3235                                                           <rank>strain</rank>
3236                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
3237                                                         </taxonomy>
3238                                                       </clade>
3239                                                     </clade>
3240                                                     <clade>
3241                                                       <taxonomy>
3242                                                         <id provider="uniprot">486041</id>
3243                                                         <code>LACBS</code>
3244                                                         <scientific_name>Laccaria bicolor</scientific_name>
3245                                                         <common_name>Bicoloured deceiver</common_name>
3246                                                         <synonym>Laccaria laccata var. bicolor</synonym>
3247                                                         <synonym>Laccaria bicolor S238N-H82</synonym>
3248                                                         <rank>strain</rank>
3249                                                         <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>
3250                                                       </taxonomy>
3251                                                     </clade>
3252                                                   </clade>
3253                                                   <clade>
3254                                                     <taxonomy>
3255                                                       <id provider="uniprot">206324</id>
3256                                                       <scientific_name>Gymnopus luxurians</scientific_name>
3257                                                       <rank>species</rank>
3258                                                       <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
3259                                                     </taxonomy>
3260                                                   </clade>
3261                                                 </clade>
3262                                                 <clade>
3263                                                   <taxonomy>
3264                                                     <id provider="uniprot">5322</id>
3265                                                     <code>PLEOS</code>
3266                                                     <scientific_name>Pleurotus ostreatus</scientific_name>
3267                                                     <common_name>Oyster mushroom</common_name>
3268                                                     <synonym>White-rot fungus</synonym>
3269                                                     <rank>species</rank>
3270                                                     <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
3271                                                   </taxonomy>
3272                                                 </clade>
3273                                               </clade>
3274                                               <clade>
3275                                                 <taxonomy>
3276                                                   <id provider="uniprot">68889</id>
3277                                                   <scientific_name>Boletales</scientific_name>
3278                                                   <synonym>Melanogastrales</synonym>
3279                                                   <synonym>Sclerodermatales</synonym>
3280                                                   <rank>order</rank>
3281                                                 </taxonomy>
3282                                                 <clade>
3283                                                   <taxonomy>
3284                                                     <id provider="uniprot">227334</id>
3285                                                     <scientific_name>Coniophorineae</scientific_name>
3286                                                     <rank>suborder</rank>
3287                                                   </taxonomy>
3288                                                   <clade>
3289                                                     <taxonomy>
3290                                                       <id provider="uniprot">80637</id>
3291                                                       <code>CPUXX</code>
3292                                                       <scientific_name>Coniophora puteana</scientific_name>
3293                                                       <authority>Schum. ex Fries</authority>
3294                                                       <common_name>cellar fungus</common_name>
3295                                                       <rank>species</rank>
3296                                                       <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
3297                                                     </taxonomy>
3298                                                   </clade>
3299                                                   <clade>
3300                                                     <taxonomy>
3301                                                       <id provider="uniprot">578457</id>
3302                                                       <code>SERL9</code>
3303                                                       <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>
3304                                                       <common_name>Dry rot fungus</common_name>
3305                                                       <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>
3306                                                     </taxonomy>
3307                                                   </clade>
3308                                                 </clade>
3309                                                 <clade>
3310                                                   <taxonomy>
3311                                                     <id provider="uniprot">388859</id>
3312                                                     <scientific_name>Hydnomerulius pinastri</scientific_name>
3313                                                     <common_name>Spiny dry rot fungus</common_name>
3314                                                     <rank>species</rank>
3315                                                     <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>
3316                                                   </taxonomy>
3317                                                 </clade>
3318                                               </clade>
3319                                             </clade>
3320                                             <clade>
3321                                               <taxonomy>
3322                                                 <id provider="uniprot">202697</id>
3323                                                 <code>JARXX</code>
3324                                                 <scientific_name>Jaapia argillacea</scientific_name>
3325                                                 <rank>species</rank>
3326                                                 <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>
3327                                               </taxonomy>
3328                                             </clade>
3329                                           </clade>
3330                                           <clade>
3331                                             <taxonomy>
3332                                               <id provider="uniprot">104355</id>
3333                                               <code>GLOTR</code>
3334                                               <scientific_name>Gloeophyllum trabeum</scientific_name>
3335                                               <common_name>Brown rot fungus</common_name>
3336                                               <rank>species</rank>
3337                                               <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>
3338                                             </taxonomy>
3339                                           </clade>
3340                                         </clade>
3341                                         <clade>
3342                                           <taxonomy>
3343                                             <id provider="uniprot">5303</id>
3344                                             <scientific_name>Aphyllophorales</scientific_name>
3345                                             <authority>Gäum. (1926)</authority>
3346                                             <common_name>Shelf Fungi</common_name>
3347                                             <synonym>Polyporales</synonym>
3348                                             <rank>order</rank>
3349                                           </taxonomy>
3350                                           <clade>
3351                                             <taxonomy>
3352                                               <id provider="uniprot">83233</id>
3353                                               <scientific_name>Coriolaceae</scientific_name>
3354                                               <rank>family</rank>
3355                                             </taxonomy>
3356                                             <reference doi="10.1017/S1477200005001623">
3357                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
3358                                             </reference>
3359                                             <reference>
3360                                             </reference>
3361                                             <reference>
3362                                             </reference>
3363                                             <clade>
3364                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
3365                                               <clade>
3366                                                 <name>Antrodia clade</name>
3367                                                 <taxonomy>
3368                                                   <common_name>Antrodia clade</common_name>
3369                                                 </taxonomy>
3370                                                 <clade>
3371                                                   <taxonomy>
3372                                                     <id provider="uniprot">40483</id>
3373                                                     <code>FPIXX</code>
3374                                                     <scientific_name>Fomitopsis pinicola</scientific_name>
3375                                                     <authority>(Swartz) P. Karsten</authority>
3376                                                     <common_name>Red banded polypore</common_name>
3377                                                     <synonym>Fomes pinicola</synonym>
3378                                                     <synonym>Boletus pinicola</synonym>
3379                                                     <rank>species</rank>
3380                                                     <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>
3381                                                   </taxonomy>
3382                                                 </clade>
3383                                                 <clade>
3384                                                   <taxonomy>
3385                                                     <id provider="uniprot">104341</id>
3386                                                     <code>PPLXX</code>
3387                                                     <scientific_name>Postia placenta</scientific_name>
3388                                                     <synonym>Rhodonia placenta</synonym>
3389                                                     <rank>species</rank>
3390                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
3391                                                   </taxonomy>
3392                                                 </clade>
3393                                               </clade>
3394                                               <clade>
3395                                                 <name>core polyporoid clade</name>
3396                                                 <taxonomy>
3397                                                   <common_name>core polyporoid clade</common_name>
3398                                                 </taxonomy>
3399                                                 <clade>
3400                                                   <taxonomy>
3401                                                     <id provider="uniprot">5325</id>
3402                                                     <code>TRAVE</code>
3403                                                     <scientific_name>Trametes versicolor</scientific_name>
3404                                                     <authority>(L.) Lloyd 1921</authority>
3405                                                     <common_name>White-rot fungus</common_name>
3406                                                     <synonym>Coriolus versicolor</synonym>
3407                                                     <synonym>Bjerkandera versicolor</synonym>
3408                                                     <rank>species</rank>
3409                                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg</uri>
3410                                                   </taxonomy>
3411                                                 </clade>
3412                                                 <clade>
3413                                                   <taxonomy>
3414                                                     <id provider="uniprot">742152</id>
3415                                                     <code>WOLCO</code>
3416                                                     <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>
3417                                                     <common_name>Brown rot fungus</common_name>
3418                                                     <synonym>Wolfiporia cocos MD-104 SS10</synonym>
3419                                                     <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>
3420                                                   </taxonomy>
3421                                                 </clade>
3422                                               </clade>
3423                                             </clade>
3424                                             <clade>
3425                                               <taxonomy>
3426                                                 <id provider="uniprot">42742</id>
3427                                                 <code>CERSU</code>
3428                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>
3429                                                 <rank>species</rank>
3430                                               </taxonomy>
3431                                             </clade>
3432                                           </clade>
3433                                           <clade>
3434                                             <taxonomy>
3435                                               <id provider="uniprot">732165</id>
3436                                               <code>DICSQ</code>
3437                                               <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>
3438                                               <common_name>Western red white-rot fungus</common_name>
3439                                               <synonym>Dichomitus squalens LYAD-421 SS1</synonym>
3440                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
3441                                             </taxonomy>
3442                                           </clade>
3443                                         </clade>
3444                                       </clade>
3445                                       <clade>
3446                                         <taxonomy>
3447                                           <id provider="uniprot">13563</id>
3448                                           <code>HETAN</code>
3449                                           <scientific_name>Heterobasidion annosum</scientific_name>
3450                                           <common_name>Root rot fungus</common_name>
3451                                           <rank>species</rank>
3452                                         </taxonomy>
3453                                       </clade>
3454                                     </clade>
3455                                     <clade>
3456                                       <taxonomy>
3457                                         <id provider="uniprot">5215</id>
3458                                         <scientific_name>Tremellaceae</scientific_name>
3459                                         <rank>family</rank>
3460                                       </taxonomy>
3461                                       <clade>
3462                                         <taxonomy>
3463                                           <id provider="uniprot">5207</id>
3464                                           <code>CRYNE</code>
3465                                           <scientific_name>Cryptococcus neoformans</scientific_name>
3466                                           <synonym>Filobasidiella neoformans</synonym>
3467                                           <rank>species</rank>
3468                                         </taxonomy>
3469                                       </clade>
3470                                       <clade>
3471                                         <taxonomy>
3472                                           <id provider="eol">1029985</id>
3473                                           <code>TREME</code>
3474                                           <scientific_name>Tremella mesenterica</scientific_name>
3475                                           <authority>Pers. 1800</authority>
3476                                           <common_name>Jelly fungus</common_name>
3477                                           <synonym>Yellow Brain</synonym>
3478                                           <synonym>Tremella lutescens</synonym>
3479                                           <rank>species</rank>
3480                                         </taxonomy>
3481                                       </clade>
3482                                     </clade>
3483                                   </clade>
3484                                   <clade>
3485                                     <taxonomy>
3486                                       <id provider="uniprot">452284</id>
3487                                       <scientific_name>Ustilaginomycotina</scientific_name>
3488                                       <rank>subphylum</rank>
3489                                     </taxonomy>
3490                                     <clade>
3491                                       <taxonomy>
3492                                         <id provider="uniprot">425265</id>
3493                                         <code>MALGO</code>
3494                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
3495                                         <common_name>Dandruff-associated fungus</common_name>
3496                                       </taxonomy>
3497                                     </clade>
3498                                     <clade>
3499                                       <taxonomy>
3500                                         <id provider="uniprot">237631</id>
3501                                         <code>USTMA</code>
3502                                         <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>
3503                                         <common_name>Corn smut fungus</common_name>
3504                                         <rank>species</rank>
3505                                       </taxonomy>
3506                                     </clade>
3507                                   </clade>
3508                                 </clade>
3509                                 <clade>
3510                                   <taxonomy>
3511                                     <id provider="uniprot">29000</id>
3512                                     <scientific_name>Pucciniomycotina</scientific_name>
3513                                     <rank>subphylum</rank>
3514                                   </taxonomy>
3515                                   <clade>
3516                                     <taxonomy>
3517                                       <id provider="uniprot">5258</id>
3518                                       <scientific_name>Pucciniales</scientific_name>
3519                                       <common_name>rusts</common_name>
3520                                       <rank>order</rank>
3521                                     </taxonomy>
3522                                     <clade>
3523                                       <taxonomy>
3524                                         <id provider="uniprot">747676</id>
3525                                         <code>MELLP</code>
3526                                         <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>
3527                                         <authority>Kleb. 1902</authority>
3528                                         <common_name>Poplar leaf rust fungus</common_name>
3529                                         <synonym>Melampsora larici-populina 98AG31</synonym>
3530                                         <synonym>Melampsora laricis-populina 98AG31</synonym>
3531                                         <rank>strain</rank>
3532                                       </taxonomy>
3533                                     </clade>
3534                                     <clade>
3535                                       <taxonomy>
3536                                         <id provider="uniprot">5297</id>
3537                                         <code>PUCGR</code>
3538                                         <scientific_name>Puccinia graminis</scientific_name>
3539                                         <authority>Pers. 1794</authority>
3540                                         <common_name>Black stem rust fungus</common_name>
3541                                         <rank>species</rank>
3542                                       </taxonomy>
3543                                     </clade>
3544                                   </clade>
3545                                   <clade>
3546                                     <taxonomy>
3547                                       <id provider="uniprot">89013</id>
3548                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>
3549                                     </taxonomy>
3550                                     <clade>
3551                                       <taxonomy>
3552                                         <id provider="uniprot">29898</id>
3553                                         <code>RHOGR</code>
3554                                         <scientific_name>Rhodotorula graminis</scientific_name>
3555                                         <common_name>Yeast</common_name>
3556                                         <rank>species</rank>
3557                                       </taxonomy>
3558                                     </clade>
3559                                     <clade>
3560                                       <taxonomy>
3561                                         <id provider="uniprot">40563</id>
3562                                         <code>SPORO</code>
3563                                         <scientific_name>Sporobolomyces roseus</scientific_name>
3564                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>
3565                                         <rank>species</rank>
3566                                       </taxonomy>
3567                                     </clade>
3568                                   </clade>
3569                                 </clade>
3570                               </clade>
3571                               <clade>
3572                                 <taxonomy>
3573                                   <id provider="uniprot">671144</id>
3574                                   <code>WALSC</code>
3575                                   <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>
3576                                   <rank>strain</rank>
3577                                 </taxonomy>
3578                               </clade>
3579                             </clade>
3580                           </clade>
3581                           <clade>
3582                             <taxonomy>
3583                               <id provider="uniprot">451507</id>
3584                               <scientific_name>Mucoromycotina</scientific_name>
3585                               <rank>subphylum</rank>
3586                             </taxonomy>
3587                             <clade>
3588                               <taxonomy>
3589                                 <id provider="uniprot">34489</id>
3590                                 <scientific_name>Mucoraceae</scientific_name>
3591                                 <rank>family</rank>
3592                               </taxonomy>
3593                               <clade>
3594                                 <taxonomy>
3595                                   <id provider="uniprot">36080</id>
3596                                   <code>MUCCI</code>
3597                                   <scientific_name>Mucor circinelloides</scientific_name>
3598                                   <synonym>Mucor griseo-roseus</synonym>
3599                                   <rank>species</rank>
3600                                 </taxonomy>
3601                               </clade>
3602                               <clade>
3603                                 <taxonomy>
3604                                   <id provider="uniprot">4837</id>
3605                                   <code>PHYBL</code>
3606                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>
3607                                   <rank>species</rank>
3608                                 </taxonomy>
3609                               </clade>
3610                               <clade>
3611                                 <taxonomy>
3612                                   <id provider="uniprot">64495</id>
3613                                   <code>RHIOR</code>
3614                                   <scientific_name>Rhizopus oryzae</scientific_name>
3615                                   <common_name>Mucormycosis agent</common_name>
3616                                   <synonym>Rhizopus delemar</synonym>
3617                                   <synonym>Rhizopus arrhizus var. delemar</synonym>
3618                                   <rank>species</rank>
3619                                 </taxonomy>
3620                               </clade>
3621                             </clade>
3622                             <clade>
3623                               <taxonomy>
3624                                 <id provider="uniprot">1069443</id>
3625                                 <code>MVNXX</code>
3626                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>
3627                                 <rank>species</rank>
3628                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>
3629                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
3630                               </taxonomy>
3631                             </clade>
3632                           </clade>
3633                         </clade>
3634                         <clade>
3635                           <taxonomy>
3636                             <id provider="uniprot">61392</id>
3637                             <code>CREXX</code>
3638                             <scientific_name>Coemansia reversa</scientific_name>
3639                             <rank>species</rank>
3640                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>
3641                           </taxonomy>
3642                         </clade>
3643                       </clade>
3644                       <clade>
3645                         <taxonomy>
3646                           <id provider="uniprot">28583</id>
3647                           <code>ALLMA</code>
3648                           <scientific_name>Allomyces macrogynus</scientific_name>
3649                           <rank>species</rank>
3650                         </taxonomy>
3651                       </clade>
3652                     </clade>
3653                     <clade>
3654                       <taxonomy>
3655                         <id provider="uniprot">4761</id>
3656                         <scientific_name>Chytridiomycota</scientific_name>
3657                         <common_name>chytrids</common_name>
3658                         <synonym>Mastigomycotina</synonym>
3659                         <rank>phylum</rank>
3660                       </taxonomy>
3661                       <clade>
3662                         <taxonomy>
3663                           <id provider="uniprot">451435</id>
3664                           <scientific_name>Chytridiomycetes</scientific_name>
3665                           <rank>class</rank>
3666                         </taxonomy>
3667                         <clade>
3668                           <taxonomy>
3669                             <id provider="uniprot">684364</id>
3670                             <code>BATDJ</code>
3671                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>
3672                             <common_name>Frog chytrid fungus</common_name>
3673                             <rank>strain</rank>
3674                           </taxonomy>
3675                         </clade>
3676                         <clade>
3677                           <taxonomy>
3678                             <id provider="uniprot">109760</id>
3679                             <code>SPIPN</code>
3680                             <scientific_name>Spizellomyces punctatus</scientific_name>
3681                             <rank>species</rank>
3682                           </taxonomy>
3683                         </clade>
3684                       </clade>
3685                       <clade>
3686                         <taxonomy>
3687                           <id provider="uniprot">1123529</id>
3688                           <code>GONPR</code>
3689                           <scientific_name>Gonapodya prolifera</scientific_name>
3690                           <authority>A. Fisch. 1892</authority>
3691                           <common_name>Aquatic fungus</common_name>
3692                           <rank>species</rank>
3693                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
3694                         </taxonomy>
3695                       </clade>
3696                     </clade>
3697                   </clade>
3698                   <clade>
3699                     <taxonomy>
3700                       <id provider="uniprot">73868</id>
3701                       <code>PIRSE</code>
3702                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>
3703                       <rank>species</rank>
3704                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
3705                     </taxonomy>
3706                   </clade>
3707                 </clade>
3708                 <clade>
3709                   <taxonomy>
3710                     <id provider="uniprot">6029</id>
3711                     <scientific_name>Microsporidia</scientific_name>
3712                     <rank>phylum</rank>
3713                   </taxonomy>
3714                   <reference>
3715                     <desc>Disseminated Infection Caused by Novel Species of Microsporidium, Thailand</desc>
3716                   </reference>
3717                   <clade>
3718                     <taxonomy>
3719                       <id provider="uniprot">6032</id>
3720                       <scientific_name>Apansporoblastina</scientific_name>
3721                       <rank>suborder</rank>
3722                     </taxonomy>
3723                     <clade>
3724                       <taxonomy>
3725                         <id provider="uniprot">6033</id>
3726                         <scientific_name>Encephalitozoon</scientific_name>
3727                         <rank>genus</rank>
3728                       </taxonomy>
3729                       <clade>
3730                         <taxonomy>
3731                           <id provider="uniprot">284813</id>
3732                           <code>ENCCU</code>
3733                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>
3734                           <common_name>Microsporidian parasite</common_name>
3735                           <rank>strain</rank>
3736                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>
3737                         </taxonomy>
3738                       </clade>
3739                       <clade>
3740                         <taxonomy>
3741                           <id provider="uniprot">907965</id>
3742                           <code>ENCHA</code>
3743                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>
3744                           <common_name>Microsporidian parasite</common_name>
3745                           <rank>strain</rank>
3746                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>
3747                         </taxonomy>
3748                       </clade>
3749                     </clade>
3750                     <clade>
3751                       <name>Nosematidae &amp; Enterocytozoonidae</name>
3752                       <clade>
3753                         <taxonomy>
3754                           <id provider="uniprot">993615</id>
3755                           <code>VITCO</code>
3756                           <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>
3757                           <common_name>Microsporidian parasite</common_name>
3758                           <synonym>Nosema corneum</synonym>
3759                         </taxonomy>
3760                       </clade>
3761                       <clade>
3762                         <taxonomy>
3763                           <id provider="uniprot">481877</id>
3764                           <code>ENTBH</code>
3765                           <scientific_name>Enterocytozoon bieneusi (strain H348)</scientific_name>
3766                           <common_name>Microsporidian parasite</common_name>
3767                           <uri>http://www.biolib.cz/IMG/GAL/17310.jpg</uri>
3768                         </taxonomy>
3769                       </clade>
3770                     </clade>
3771                   </clade>
3772                   <clade>
3773                     <taxonomy>
3774                       <id provider="uniprot">35232</id>
3775                       <scientific_name>Pleistophoridae</scientific_name>
3776                       <rank>family</rank>
3777                     </taxonomy>
3778                     <clade>
3779                       <taxonomy>
3780                         <id provider="uniprot">72359</id>
3781                         <code>TRAHO</code>
3782                         <scientific_name>Trachipleistophora hominis</scientific_name>
3783                         <common_name>Microsporidian parasite</common_name>
3784                         <rank>species</rank>
3785                       </taxonomy>
3786                     </clade>
3787                     <clade>
3788                       <taxonomy>
3789                         <id provider="uniprot">948595</id>
3790                         <code>VAVCU</code>
3791                         <scientific_name>Vavraia culicis (isolate floridensis)</scientific_name>
3792                         <common_name>Microsporidian parasite</common_name>
3793                       </taxonomy>
3794                     </clade>
3795                   </clade>
3796                   <clade>
3797                     <taxonomy>
3798                       <id provider="uniprot">1003232</id>
3799                       <code>EDHAE</code>
3800                       <scientific_name>Edhazardia aedis (strain USNM 41457)</scientific_name>
3801                       <common_name>Microsporidian parasite</common_name>
3802                       <uri>http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg</uri>
3803                     </taxonomy>
3804                   </clade>
3805                 </clade>
3806               </clade>
3807               <clade>
3808                 <taxonomy>
3809                   <id provider="uniprot">1001604</id>
3810                   <scientific_name>Nucleariidae and Fonticula group</scientific_name>
3811                 </taxonomy>
3812                 <reference doi="10.1093/molbev/msp185">
3813                   <desc>Phylogeny of the �Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta</desc>
3814                 </reference>
3815                 <clade>
3816                   <taxonomy>
3817                     <id provider="uniprot">691883</id>
3818                     <code>FALXX</code>
3819                     <scientific_name>Fonticula alba</scientific_name>
3820                     <authority>Worley, Raper &amp; Hohl. 1979</authority>
3821                     <rank>species</rank>
3822                     <uri>http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif</uri>
3823                   </taxonomy>
3824                 </clade>
3825                 <clade>
3826                   <taxonomy>
3827                     <id provider="uniprot">154970</id>
3828                     <scientific_name>Nuclearia simplex</scientific_name>
3829                     <rank>species</rank>
3830                   </taxonomy>
3831                 </clade>
3832               </clade>
3833             </clade>
3834           </clade>
3835           <clade>
3836             <taxonomy>
3837               <id provider="uniprot">554915</id>
3838               <scientific_name>Amoebozoa</scientific_name>
3839             </taxonomy>
3840             <clade>
3841               <taxonomy>
3842                 <id provider="uniprot">33083</id>
3843                 <scientific_name>Dictyosteliida</scientific_name>
3844                 <common_name>dictyostelid cellular slime molds</common_name>
3845                 <rank>order</rank>
3846               </taxonomy>
3847               <clade>
3848                 <taxonomy>
3849                   <id provider="uniprot">5782</id>
3850                   <scientific_name>Dictyostelium</scientific_name>
3851                   <rank>genus</rank>
3852                 </taxonomy>
3853                 <reference doi="10.1186/1471-2148-11-84">
3854                   <desc>An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns</desc>
3855                 </reference>
3856                 <reference>
3857                 </reference>
3858                 <reference>
3859                 </reference>
3860                 <clade>
3861                   <name>group 4</name>
3862                   <clade>
3863                     <taxonomy>
3864                       <id provider="uniprot">44689</id>
3865                       <code>DICDI</code>
3866                       <scientific_name>Dictyostelium discoideum</scientific_name>
3867                       <common_name>Slime mold</common_name>
3868                       <rank>species</rank>
3869                       <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>
3870                     </taxonomy>
3871                   </clade>
3872                   <clade>
3873                     <taxonomy>
3874                       <id provider="uniprot">5786</id>
3875                       <code>DICPU</code>
3876                       <scientific_name>Dictyostelium purpureum</scientific_name>
3877                       <common_name>Slime mold</common_name>
3878                       <rank>species</rank>
3879                     </taxonomy>
3880                   </clade>
3881                 </clade>
3882                 <clade>
3883                   <taxonomy>
3884                     <id provider="uniprot">1054147</id>
3885                     <code>DICFS</code>
3886                     <scientific_name>Dictyostelium fasciculatum (strain SH3)</scientific_name>
3887                     <common_name>Slime mold</common_name>
3888                     <rank>strain</rank>
3889                   </taxonomy>
3890                 </clade>
3891               </clade>
3892               <clade>
3893                 <taxonomy>
3894                   <id provider="uniprot">13642</id>
3895                   <code>POLPA</code>
3896                   <scientific_name>Polysphondylium pallidum</scientific_name>
3897                   <common_name>Cellular slime mold</common_name>
3898                   <rank>species</rank>
3899                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>
3900                 </taxonomy>
3901               </clade>
3902             </clade>
3903             <clade>
3904               <taxonomy>
3905                 <id provider="uniprot">5758</id>
3906                 <scientific_name>Entamoeba</scientific_name>
3907                 <rank>genus</rank>
3908               </taxonomy>
3909               <clade>
3910                 <taxonomy>
3911                   <id provider="uniprot">5759</id>
3912                   <code>ENTHI</code>
3913                   <scientific_name>Entamoeba histolytica</scientific_name>
3914                   <rank>species</rank>
3915                   <uri>http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg</uri>
3916                 </taxonomy>
3917               </clade>
3918               <clade>
3919                 <taxonomy>
3920                   <id provider="uniprot">370354</id>
3921                   <code>ENTDS</code>
3922                   <scientific_name>Entamoeba dispar (strain ATCC PRA-260 / SAW760)</scientific_name>
3923                 </taxonomy>
3924               </clade>
3925             </clade>
3926           </clade>
3927         </clade>
3928         <clade>
3929           <name>Bikonta</name>
3930           <reference doi="10.1099/ijs.0.63216-0">
3931           </reference>
3932           <clade>
3933             <name>Plants+HC+SAR megagroup</name>
3934             <clade>
3935               <name>Plants+HC</name>
3936               <clade>
3937                 <name>Archaeplastida</name>
3938                 <clade>
3939                   <taxonomy>
3940                     <id provider="uniprot">33090</id>
3941                     <scientific_name>Viridiplantae</scientific_name>
3942                     <common_name>green plants</common_name>
3943                     <rank>kingdom</rank>
3944                   </taxonomy>
3945                   <clade>
3946                     <taxonomy>
3947                       <id provider="uniprot">3193</id>
3948                       <scientific_name>Embryophyta</scientific_name>
3949                     </taxonomy>
3950                     <clade>
3951                       <taxonomy>
3952                         <id provider="uniprot">58023</id>
3953                         <scientific_name>Tracheophyta</scientific_name>
3954                         <common_name>vascular plants</common_name>
3955                       </taxonomy>
3956                       <clade>
3957                         <taxonomy>
3958                           <id provider="uniprot">58024</id>
3959                           <scientific_name>Spermatophyta</scientific_name>
3960                           <common_name>seed plants</common_name>
3961                         </taxonomy>
3962                         <clade>
3963                           <taxonomy>
3964                             <id provider="uniprot">3398</id>
3965                             <scientific_name>Magnoliophyta</scientific_name>
3966                             <common_name>flowering plants</common_name>
3967                             <synonym>Angiospermae</synonym>
3968                           </taxonomy>
3969                           <clade>
3970                             <taxonomy>
3971                               <id provider="uniprot">71240</id>
3972                               <scientific_name>eudicotyledons</scientific_name>
3973                             </taxonomy>
3974                             <clade>
3975                               <taxonomy>
3976                                 <id provider="uniprot">91827</id>
3977                                 <scientific_name>core eudicotyledons</scientific_name>
3978                               </taxonomy>
3979                               <clade>
3980                                 <taxonomy>
3981                                   <id provider="uniprot">71275</id>
3982                                   <scientific_name>rosids</scientific_name>
3983                                   <rank>subclass</rank>
3984                                 </taxonomy>
3985                                 <clade>
3986                                   <name>fabids &amp; malvids</name>
3987                                   <clade>
3988                                     <taxonomy>
3989                                       <id provider="uniprot">91835</id>
3990                                       <scientific_name>fabids</scientific_name>
3991                                     </taxonomy>
3992                                     <clade>
3993                                       <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3994                                       <clade>
3995                                         <name>Rosales &amp; Cucurbitales</name>
3996                                         <clade>
3997                                           <taxonomy>
3998                                             <id provider="uniprot">3745</id>
3999                                             <scientific_name>Rosaceae</scientific_name>
4000                                             <rank>family</rank>
4001                                           </taxonomy>
4002                                           <clade>
4003                                             <taxonomy>
4004                                               <id provider="uniprot">57918</id>
4005                                               <code>FRAVE</code>
4006                                               <scientific_name>Fragaria vesca</scientific_name>
4007                                               <common_name>Woodland strawberry</common_name>
4008                                               <synonym>Fragaria vesca L.</synonym>
4009                                               <synonym>European strawberry</synonym>
4010                                               <synonym>alpine strawberry</synonym>
4011                                               <rank>species</rank>
4012                                               <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
4013                                               <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
4014                                             </taxonomy>
4015                                           </clade>
4016                                           <clade>
4017                                             <taxonomy>
4018                                               <id provider="uniprot">3760</id>
4019                                               <code>PRUPE</code>
4020                                               <scientific_name>Prunus persica</scientific_name>
4021                                               <common_name>Peach</common_name>
4022                                               <synonym>Persica vulgaris</synonym>
4023                                               <synonym>Amygdalus persica</synonym>
4024                                               <rank>species</rank>
4025                                               <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
4026                                             </taxonomy>
4027                                           </clade>
4028                                         </clade>
4029                                         <clade>
4030                                           <taxonomy>
4031                                             <id provider="uniprot">3659</id>
4032                                             <code>CUCSA</code>
4033                                             <scientific_name>Cucumis sativus</scientific_name>
4034                                             <common_name>Cucumber</common_name>
4035                                             <rank>species</rank>
4036                                           </taxonomy>
4037                                         </clade>
4038                                       </clade>
4039                                       <clade>
4040                                         <taxonomy>
4041                                           <id provider="uniprot">3814</id>
4042                                           <scientific_name>Papilionoideae</scientific_name>
4043                                           <rank>subfamily</rank>
4044                                         </taxonomy>
4045                                         <clade>
4046                                           <taxonomy>
4047                                             <id provider="uniprot">3847</id>
4048                                             <code>SOYBN</code>
4049                                             <scientific_name>Glycine max</scientific_name>
4050                                             <authority>cv. Wye</authority>
4051                                             <common_name>Soybean</common_name>
4052                                             <synonym>Glycine hispida</synonym>
4053                                             <rank>species</rank>
4054                                           </taxonomy>
4055                                         </clade>
4056                                         <clade>
4057                                           <taxonomy>
4058                                             <id provider="uniprot">3880</id>
4059                                             <code>MEDTR</code>
4060                                             <scientific_name>Medicago truncatula</scientific_name>
4061                                             <common_name>Barrel medic</common_name>
4062                                             <synonym>Medicago tribuloides</synonym>
4063                                             <rank>species</rank>
4064                                             <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
4065                                           </taxonomy>
4066                                         </clade>
4067                                       </clade>
4068                                     </clade>
4069                                     <clade>
4070                                       <taxonomy>
4071                                         <id provider="uniprot">3646</id>
4072                                         <scientific_name>Malpighiales</scientific_name>
4073                                         <rank>order</rank>
4074                                       </taxonomy>
4075                                       <clade>
4076                                         <taxonomy>
4077                                           <id provider="uniprot">3977</id>
4078                                           <scientific_name>Euphorbiaceae</scientific_name>
4079                                           <rank>family</rank>
4080                                         </taxonomy>
4081                                         <clade>
4082                                           <taxonomy>
4083                                             <id provider="uniprot">3983</id>
4084                                             <code>MANES</code>
4085                                             <scientific_name>Manihot esculenta</scientific_name>
4086                                             <common_name>Tapioca</common_name>
4087                                             <synonym>Jatropha manihot</synonym>
4088                                             <rank>species</rank>
4089                                             <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
4090                                           </taxonomy>
4091                                         </clade>
4092                                         <clade>
4093                                           <taxonomy>
4094                                             <id provider="uniprot">3988</id>
4095                                             <code>RICCO</code>
4096                                             <scientific_name>Ricinus communis</scientific_name>
4097                                             <common_name>Castor bean</common_name>
4098                                             <synonym>Ricinus sanguineus</synonym>
4099                                             <rank>species</rank>
4100                                             <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
4101                                           </taxonomy>
4102                                         </clade>
4103                                       </clade>
4104                                       <clade>
4105                                         <taxonomy>
4106                                           <id provider="uniprot">3694</id>
4107                                           <code>POPTR</code>
4108                                           <scientific_name>Populus trichocarpa</scientific_name>
4109                                           <common_name>Western balsam poplar</common_name>
4110                                           <synonym>Populus balsamifera subsp. trichocarpa</synonym>
4111                                           <rank>species</rank>
4112                                         </taxonomy>
4113                                       </clade>
4114                                     </clade>
4115                                   </clade>
4116                                   <clade>
4117                                     <taxonomy>
4118                                       <id provider="uniprot">91836</id>
4119                                       <scientific_name>malvids</scientific_name>
4120                                     </taxonomy>
4121                                     <clade>
4122                                       <name>Brassicales &amp; Sapindales</name>
4123                                       <clade>
4124                                         <taxonomy>
4125                                           <id provider="uniprot">3699</id>
4126                                           <scientific_name>Brassicales</scientific_name>
4127                                           <rank>order</rank>
4128                                         </taxonomy>
4129                                         <clade>
4130                                           <taxonomy>
4131                                             <id provider="uniprot">3700</id>
4132                                             <scientific_name>Brassicaceae</scientific_name>
4133                                             <rank>family</rank>
4134                                           </taxonomy>
4135                                           <clade>
4136                                             <taxonomy>
4137                                               <id provider="uniprot">3701</id>
4138                                               <scientific_name>Arabidopsis</scientific_name>
4139                                               <rank>genus</rank>
4140                                             </taxonomy>
4141                                             <clade>
4142                                               <taxonomy>
4143                                                 <id provider="uniprot">59689</id>
4144                                                 <code>ARALY</code>
4145                                                 <scientific_name>Arabidopsis lyrata</scientific_name>
4146                                                 <common_name>Lyre-leaved rock-cress</common_name>
4147                                                 <synonym>Arabis lyrata</synonym>
4148                                                 <rank>species</rank>
4149                                               </taxonomy>
4150                                             </clade>
4151                                             <clade>
4152                                               <taxonomy>
4153                                                 <id provider="uniprot">3702</id>
4154                                                 <code>ARATH</code>
4155                                                 <scientific_name>Arabidopsis thaliana</scientific_name>
4156                                                 <common_name>Mouse-ear cress</common_name>
4157                                                 <rank>species</rank>
4158                                               </taxonomy>
4159                                             </clade>
4160                                           </clade>
4161                                           <clade>
4162                                             <taxonomy>
4163                                               <id provider="uniprot">98038</id>
4164                                               <code>THEHA</code>
4165                                               <scientific_name>Thellungiella halophila</scientific_name>
4166                                               <common_name>Salt cress</common_name>
4167                                               <rank>species</rank>
4168                                               <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>
4169                                             </taxonomy>
4170                                           </clade>
4171                                         </clade>
4172                                         <clade>
4173                                           <taxonomy>
4174                                             <id provider="uniprot">3649</id>
4175                                             <code>CARPA</code>
4176                                             <scientific_name>Carica papaya</scientific_name>
4177                                             <common_name>Papaya</common_name>
4178                                             <rank>species</rank>
4179                                             <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
4180                                             <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
4181                                           </taxonomy>
4182                                         </clade>
4183                                       </clade>
4184                                       <clade>
4185                                         <taxonomy>
4186                                           <id provider="uniprot">2706</id>
4187                                           <scientific_name>Citrus</scientific_name>
4188                                           <rank>genus</rank>
4189                                         </taxonomy>
4190                                         <clade>
4191                                           <taxonomy>
4192                                             <id provider="uniprot">85681</id>
4193                                             <code>CCLXX</code>
4194                                             <scientific_name>Citrus clementina</scientific_name>
4195                                             <synonym>Citrus clementina hort. ex Tanaka</synonym>
4196                                             <rank>species</rank>
4197                                             <uri>http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg</uri>
4198                                           </taxonomy>
4199                                         </clade>
4200                                         <clade>
4201                                           <taxonomy>
4202                                             <id provider="uniprot">2711</id>
4203                                             <code>CITSI</code>
4204                                             <scientific_name>Citrus sinensis</scientific_name>
4205                                             <common_name>Sweet orange</common_name>
4206                                             <synonym>Citrus x sinensis</synonym>
4207                                             <synonym>Citrus aurantium var. sinensis</synonym>
4208                                             <rank>species</rank>
4209                                             <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
4210                                           </taxonomy>
4211                                         </clade>
4212                                       </clade>
4213                                     </clade>
4214                                     <clade>
4215                                       <taxonomy>
4216                                         <id provider="uniprot">71139</id>
4217                                         <code>EUCGR</code>
4218                                         <scientific_name>Eucalyptus grandis</scientific_name>
4219                                         <common_name>Flooded gum</common_name>
4220                                         <rank>species</rank>
4221                                         <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
4222                                       </taxonomy>
4223                                     </clade>
4224                                   </clade>
4225                                 </clade>
4226                                 <clade>
4227                                   <taxonomy>
4228                                     <id provider="eol">582304</id>
4229                                     <code>VITVI</code>
4230                                     <scientific_name>Vitis vinifera</scientific_name>
4231                                     <common_name>Grape</common_name>
4232                                     <rank>species</rank>
4233                                   </taxonomy>
4234                                 </clade>
4235                               </clade>
4236                               <clade>
4237                                 <taxonomy>
4238                                   <id provider="uniprot">91888</id>
4239                                   <scientific_name>lamiids</scientific_name>
4240                                 </taxonomy>
4241                                 <clade>
4242                                   <taxonomy>
4243                                     <id provider="uniprot">4070</id>
4244                                     <scientific_name>Solanaceae</scientific_name>
4245                                     <rank>family</rank>
4246                                   </taxonomy>
4247                                   <clade>
4248                                     <taxonomy>
4249                                       <id provider="uniprot">4107</id>
4250                                       <scientific_name>Solanum</scientific_name>
4251                                       <rank>genus</rank>
4252                                     </taxonomy>
4253                                     <clade>
4254                                       <taxonomy>
4255                                         <id provider="uniprot">49274</id>
4256                                         <scientific_name>Lycopersicon</scientific_name>
4257                                         <rank>subgenus</rank>
4258                                       </taxonomy>
4259                                       <clade>
4260                                         <taxonomy>
4261                                           <id provider="uniprot">4081</id>
4262                                           <code>SOLLC</code>
4263                                           <scientific_name>Solanum lycopersicum</scientific_name>
4264                                           <common_name>Tomato</common_name>
4265                                           <synonym>Lycopersicon esculentum</synonym>
4266                                           <rank>species</rank>
4267                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
4268                                         </taxonomy>
4269                                       </clade>
4270                                       <clade>
4271                                         <taxonomy>
4272                                           <id provider="uniprot">4084</id>
4273                                           <code>SOLPI</code>
4274                                           <scientific_name>Solanum pimpinellifolium</scientific_name>
4275                                           <common_name>Currant tomato</common_name>
4276                                           <synonym>Lycopersicon pimpinellifolium</synonym>
4277                                           <rank>species</rank>
4278                                           <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>
4279                                         </taxonomy>
4280                                       </clade>
4281                                     </clade>
4282                                     <clade>
4283                                       <taxonomy>
4284                                         <id provider="uniprot">4113</id>
4285                                         <code>SOLTU</code>
4286                                         <scientific_name>Solanum tuberosum</scientific_name>
4287                                         <common_name>Potato</common_name>
4288                                         <rank>species</rank>
4289                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>
4290                                       </taxonomy>
4291                                     </clade>
4292                                   </clade>
4293                                   <clade>
4294                                     <taxonomy>
4295                                       <id provider="uniprot">4097</id>
4296                                       <code>TOBAC</code>
4297                                       <scientific_name>Nicotiana tabacum</scientific_name>
4298                                       <common_name>Common tobacco</common_name>
4299                                       <rank>species</rank>
4300                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
4301                                     </taxonomy>
4302                                   </clade>
4303                                 </clade>
4304                                 <clade>
4305                                   <taxonomy>
4306                                     <id provider="uniprot">4155</id>
4307                                     <code>MIMGU</code>
4308                                     <scientific_name>Mimulus guttatus</scientific_name>
4309                                     <common_name>Yellow monkey flower</common_name>
4310                                     <synonym>Yellow monkey flower</synonym>
4311                                     <rank>species</rank>
4312                                   </taxonomy>
4313                                 </clade>
4314                               </clade>
4315                             </clade>
4316                             <clade>
4317                               <taxonomy>
4318                                 <id provider="uniprot">218851</id>
4319                                 <code>AQUCA</code>
4320                                 <scientific_name>Aquilegia caerulea</scientific_name>
4321                                 <authority>E.James</authority>
4322                                 <common_name>Rocky mountain columbine</common_name>
4323                                 <synonym>Aquilegia coerulea</synonym>
4324                                 <rank>species</rank>
4325                                 <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>
4326                               </taxonomy>
4327                             </clade>
4328                           </clade>
4329                           <clade>
4330                             <taxonomy>
4331                               <id provider="uniprot">4447</id>
4332                               <scientific_name>Liliopsida</scientific_name>
4333                               <common_name>monocots</common_name>
4334                               <synonym>Monocotyledoneae</synonym>
4335                               <rank>class</rank>
4336                             </taxonomy>
4337                             <clade>
4338                               <taxonomy>
4339                                 <id provider="uniprot">4479</id>
4340                                 <scientific_name>Poaceae</scientific_name>
4341                                 <common_name>grass family</common_name>
4342                                 <synonym>Gramineae</synonym>
4343                                 <rank>family</rank>
4344                               </taxonomy>
4345                               <clade>
4346                                 <taxonomy>
4347                                   <id provider="uniprot">147369</id>
4348                                   <scientific_name>Panicoideae</scientific_name>
4349                                   <authority>Link, 1827</authority>
4350                                   <synonym>Centothecoideae</synonym>
4351                                   <rank>subfamily</rank>
4352                                 </taxonomy>
4353                                 <clade>
4354                                   <taxonomy>
4355                                     <id provider="uniprot">147429</id>
4356                                     <scientific_name>Andropogoneae</scientific_name>
4357                                     <authority>Dumort., 1824</authority>
4358                                     <rank>tribe</rank>
4359                                   </taxonomy>
4360                                   <clade>
4361                                     <taxonomy>
4362                                       <id provider="uniprot">4558</id>
4363                                       <code>SORBI</code>
4364                                       <scientific_name>Sorghum bicolor</scientific_name>
4365                                       <common_name>Sorghum</common_name>
4366                                       <synonym>Sorghum vulgare</synonym>
4367                                       <rank>species</rank>
4368                                     </taxonomy>
4369                                   </clade>
4370                                   <clade>
4371                                     <taxonomy>
4372                                       <id provider="uniprot">4577</id>
4373                                       <code>MAIZE</code>
4374                                       <scientific_name>Zea mays</scientific_name>
4375                                       <common_name>Maize</common_name>
4376                                       <rank>species</rank>
4377                                     </taxonomy>
4378                                   </clade>
4379                                 </clade>
4380                                 <clade>
4381                                   <taxonomy>
4382                                     <id provider="uniprot">147428</id>
4383                                     <scientific_name>Paniceae</scientific_name>
4384                                     <rank>tribe</rank>
4385                                   </taxonomy>
4386                                   <clade>
4387                                     <taxonomy>
4388                                       <id provider="uniprot">38727</id>
4389                                       <code>PANVG</code>
4390                                       <scientific_name>Panicum virgatum</scientific_name>
4391                                       <common_name>switchgrass</common_name>
4392                                       <rank>species</rank>
4393                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
4394                                     </taxonomy>
4395                                   </clade>
4396                                   <clade>
4397                                     <taxonomy>
4398                                       <id provider="uniprot">4555</id>
4399                                       <code>SETIT</code>
4400                                       <scientific_name>Setaria italica</scientific_name>
4401                                       <common_name>Foxtail millet</common_name>
4402                                       <synonym>Panicum italicum</synonym>
4403                                       <rank>species</rank>
4404                                       <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
4405                                     </taxonomy>
4406                                   </clade>
4407                                 </clade>
4408                               </clade>
4409                               <clade>
4410                                 <taxonomy>
4411                                   <id provider="uniprot">359160</id>
4412                                   <scientific_name>BEP clade</scientific_name>
4413                                 </taxonomy>
4414                                 <clade>
4415                                   <taxonomy>
4416                                     <id provider="uniprot">4527</id>
4417                                     <scientific_name>Oryza</scientific_name>
4418                                     <rank>genus</rank>
4419                                   </taxonomy>
4420                                   <clade>
4421                                     <taxonomy>
4422                                       <id provider="uniprot">4530</id>
4423                                       <code>ORYSA</code>
4424                                       <scientific_name>Oryza sativa</scientific_name>
4425                                       <common_name>Rice</common_name>
4426                                       <rank>species</rank>
4427                                     </taxonomy>
4428                                   </clade>
4429                                   <clade>
4430                                     <taxonomy>
4431                                       <id provider="uniprot">39947</id>
4432                                       <code>ORYSJ</code>
4433                                       <scientific_name>Oryza sativa subsp. japonica</scientific_name>
4434                                       <common_name>Rice</common_name>
4435                                     </taxonomy>
4436                                   </clade>
4437                                 </clade>
4438                                 <clade>
4439                                   <taxonomy>
4440                                     <id provider="uniprot">147368</id>
4441                                     <scientific_name>Pooideae</scientific_name>
4442                                     <rank>subfamily</rank>
4443                                   </taxonomy>
4444                                   <clade>
4445                                     <taxonomy>
4446                                       <id provider="uniprot">15368</id>
4447                                       <code>BRADI</code>
4448                                       <scientific_name>Brachypodium distachyon</scientific_name>
4449                                       <common_name>Purple false brome</common_name>
4450                                       <synonym>Trachynia distachya</synonym>
4451                                       <rank>species</rank>
4452                                       <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>
4453                                     </taxonomy>
4454                                   </clade>
4455                                   <clade>
4456                                     <taxonomy>
4457                                       <id provider="uniprot">112509</id>
4458                                       <code>HORVD</code>
4459                                       <scientific_name>Hordeum vulgare var. distichum</scientific_name>
4460                                       <common_name>Two-rowed barley</common_name>
4461                                       <rank>subspecies</rank>
4462                                       <uri>http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg</uri>
4463                                     </taxonomy>
4464                                   </clade>
4465                                 </clade>
4466                               </clade>
4467                             </clade>
4468                             <clade>
4469                               <taxonomy>
4470                                 <id provider="uniprot">214687</id>
4471                                 <code>MUSAM</code>
4472                                 <scientific_name>Musa acuminata subsp. malaccensis</scientific_name>
4473                                 <authority>(Ridl.) N.W.Simmonds</authority>
4474                                 <common_name>Wild banana</common_name>
4475                                 <synonym>Musa malaccensis</synonym>
4476                                 <rank>subspecies</rank>
4477                                 <uri>http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg</uri>
4478                               </taxonomy>
4479                             </clade>
4480                           </clade>
4481                         </clade>
4482                         <clade>
4483                           <taxonomy>
4484                             <id provider="uniprot">3329</id>
4485                             <code>PICAB</code>
4486                             <scientific_name>Picea abies</scientific_name>
4487                             <authority>H.Karst</authority>
4488                             <common_name>Norway spruce</common_name>
4489                             <synonym>Picea excelsa</synonym>
4490                             <rank>species</rank>
4491                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>
4492                           </taxonomy>
4493                         </clade>
4494                       </clade>
4495                       <clade>
4496                         <taxonomy>
4497                           <id provider="uniprot">88036</id>
4498                           <code>SELML</code>
4499                           <scientific_name>Selaginella moellendorffii</scientific_name>
4500                           <authority>Hieron</authority>
4501                           <common_name>Spikemoss</common_name>
4502                           <rank>species</rank>
4503                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>
4504                         </taxonomy>
4505                       </clade>
4506                     </clade>
4507                     <clade>
4508                       <taxonomy>
4509                         <id provider="uniprot">145481</id>
4510                         <code>PHYPA</code>
4511                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
4512                         <common_name>Moss</common_name>
4513                         <rank>subspecies</rank>
4514                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>
4515                       </taxonomy>
4516                     </clade>
4517                   </clade>
4518                   <clade>
4519                     <taxonomy>
4520                       <id provider="uniprot">3041</id>
4521                       <scientific_name>Chlorophyta</scientific_name>
4522                       <rank>phylum</rank>
4523                     </taxonomy>
4524                     <clade>
4525                       <taxonomy>
4526                         <id provider="uniprot">13792</id>
4527                         <scientific_name>Mamiellales</scientific_name>
4528                         <rank>order</rank>
4529                       </taxonomy>
4530                       <clade>
4531                         <taxonomy>
4532                           <id provider="uniprot">70447</id>
4533                           <scientific_name>Ostreococcus</scientific_name>
4534                           <rank>genus</rank>
4535                         </taxonomy>
4536                         <clade>
4537                           <taxonomy>
4538                             <id provider="uniprot">436017</id>
4539                             <code>OSTLU</code>
4540                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
4541                           </taxonomy>
4542                         </clade>
4543                         <clade>
4544                           <taxonomy>
4545                             <id provider="uniprot">385169</id>
4546                             <code>ORCXX</code>
4547                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>
4548                             <rank>species</rank>
4549                           </taxonomy>
4550                         </clade>
4551                         <clade>
4552                           <taxonomy>
4553                             <id provider="uniprot">70448</id>
4554                             <code>OSTTA</code>
4555                             <scientific_name>Ostreococcus tauri</scientific_name>
4556                             <rank>species</rank>
4557                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>
4558                           </taxonomy>
4559                         </clade>
4560                       </clade>
4561                       <clade>
4562                         <taxonomy>
4563                           <id provider="uniprot">38832</id>
4564                           <scientific_name>Micromonas</scientific_name>
4565                           <rank>genus</rank>
4566                         </taxonomy>
4567                         <clade>
4568                           <taxonomy>
4569                             <id provider="uniprot">564608</id>
4570                             <code>MICPC</code>
4571                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
4572                             <common_name>Picoplanktonic green alga</common_name>
4573                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>
4574                           </taxonomy>
4575                         </clade>
4576                         <clade>
4577                           <taxonomy>
4578                             <id provider="uniprot">296587</id>
4579                             <code>MICSR</code>
4580                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
4581                             <common_name>Picoplanktonic green alga</common_name>
4582                             <synonym>Micromonas sp. RCC299</synonym>
4583                             <rank>species</rank>
4584                           </taxonomy>
4585                         </clade>
4586                       </clade>
4587                     </clade>
4588                     <clade>
4589                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>
4590                       <clade>
4591                         <taxonomy>
4592                           <id provider="uniprot">75966</id>
4593                           <scientific_name>Trebouxiophyceae</scientific_name>
4594                           <rank>class</rank>
4595                         </taxonomy>
4596                         <clade>
4597                           <taxonomy>
4598                             <id provider="uniprot">763042</id>
4599                             <code>ASCXX</code>
4600                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
4601                             <rank>species</rank>
4602                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
4603                           </taxonomy>
4604                         </clade>
4605                         <clade>
4606                           <taxonomy>
4607                             <id provider="uniprot">554065</id>
4608                             <code>CHLVA</code>
4609                             <scientific_name>Chlorella variabilis</scientific_name>
4610                             <authority>Shihira &amp; Krauss 1965</authority>
4611                             <common_name>Green alga</common_name>
4612                             <synonym>Chlorella sp. NC64A</synonym>
4613                             <synonym>Chlorella sp. Bnd1-ZK</synonym>
4614                             <rank>species</rank>
4615                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>
4616                           </taxonomy>
4617                         </clade>
4618                         <clade>
4619                           <taxonomy>
4620                             <id provider="uniprot">574566</id>
4621                             <code>CSUXX</code>
4622                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>
4623                             <synonym>Chlorella vulgaris C-169</synonym>
4624                             <synonym>Coccomyxa sp. C-169</synonym>
4625                             <rank>species</rank>
4626                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>
4627                           </taxonomy>
4628                         </clade>
4629                       </clade>
4630                       <clade>
4631                         <taxonomy>
4632                           <id provider="uniprot">3042</id>
4633                           <scientific_name>Chlamydomonadales</scientific_name>
4634                           <rank>order</rank>
4635                         </taxonomy>
4636                         <clade>
4637                           <taxonomy>
4638                             <id provider="uniprot">3055</id>
4639                             <code>CHLRE</code>
4640                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>
4641                             <synonym>Chlamydomonas smithii</synonym>
4642                             <rank>species</rank>
4643                             <uri>http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif</uri>
4644                           </taxonomy>
4645                         </clade>
4646                         <clade>
4647                           <taxonomy>
4648                             <id provider="uniprot">3067</id>
4649                             <code>VOLCA</code>
4650                             <scientific_name>Volvox carteri</scientific_name>
4651                             <common_name>Green alga</common_name>
4652                             <rank>species</rank>
4653                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>
4654                           </taxonomy>
4655                         </clade>
4656                       </clade>
4657                     </clade>
4658                   </clade>
4659                 </clade>
4660                 <clade>
4661                   <taxonomy>
4662                     <id provider="uniprot">2763</id>
4663                     <scientific_name>Rhodophyta</scientific_name>
4664                     <common_name>red algae</common_name>
4665                   </taxonomy>
4666                   <clade>
4667                     <taxonomy>
4668                       <id provider="uniprot">265316</id>
4669                       <scientific_name>Cyanidiaceae</scientific_name>
4670                       <rank>family</rank>
4671                     </taxonomy>
4672                     <clade>
4673                       <taxonomy>
4674                         <id provider="uniprot">45157</id>
4675                         <code>CYAME</code>
4676                         <scientific_name>Cyanidioschyzon merolae</scientific_name>
4677                         <common_name>Red alga</common_name>
4678                         <rank>species</rank>
4679                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>
4680                       </taxonomy>
4681                     </clade>
4682                     <clade>
4683                       <taxonomy>
4684                         <id provider="uniprot">130081</id>
4685                         <code>GALSU</code>
4686                         <scientific_name>Galdieria sulphuraria</scientific_name>
4687                         <common_name>Red alga</common_name>
4688                         <rank>species</rank>
4689                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>
4690                       </taxonomy>
4691                     </clade>
4692                   </clade>
4693                   <clade>
4694                     <taxonomy>
4695                       <id provider="uniprot">2769</id>
4696                       <code>CHOCR</code>
4697                       <scientific_name>Chondrus crispus</scientific_name>
4698                       <common_name>Carragheen moss</common_name>
4699                       <synonym>Irish moss</synonym>
4700                       <rank>species</rank>
4701                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>
4702                     </taxonomy>
4703                   </clade>
4704                 </clade>
4705                 <clade>
4706                   <taxonomy>
4707                     <id provider="uniprot">38254</id>
4708                     <scientific_name>Glaucocystophyceae</scientific_name>
4709                     <synonym>Glaucophyta</synonym>
4710                     <rank>class</rank>
4711                   </taxonomy>
4712                   <clade>
4713                     <taxonomy>
4714                       <id provider="uniprot">2762</id>
4715                       <code>CYAPA</code>
4716                       <scientific_name>Cyanophora paradoxa</scientific_name>
4717                       <rank>species</rank>
4718                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>
4719                     </taxonomy>
4720                   </clade>
4721                   <clade>
4722                     <taxonomy>
4723                       <id provider="uniprot">38271</id>
4724                       <scientific_name>Glaucocystis nostochinearum</scientific_name>
4725                       <rank>species</rank>
4726                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>
4727                     </taxonomy>
4728                   </clade>
4729                 </clade>
4730               </clade>
4731               <clade>
4732                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>
4733                 <clade>
4734                   <taxonomy>
4735                     <id provider="uniprot">2903</id>
4736                     <code>EMIHU</code>
4737                     <scientific_name>Emiliania huxleyi</scientific_name>
4738                     <synonym>Pontosphaera huxleyi</synonym>
4739                     <rank>species</rank>
4740                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>
4741                   </taxonomy>
4742                 </clade>
4743                 <clade>
4744                   <taxonomy>
4745                     <id provider="uniprot">55529</id>
4746                     <code>GUITH</code>
4747                     <scientific_name>Guillardia theta</scientific_name>
4748                     <synonym>Cryptomonas phi</synonym>
4749                     <rank>species</rank>
4750                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>
4751                   </taxonomy>
4752                   <reference doi="10.1016/j.cub.2007.03.069">
4753                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>
4754                   </reference>
4755                   <reference>
4756                   </reference>
4757                 </clade>
4758               </clade>
4759             </clade>
4760             <clade>
4761               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>
4762               <reference doi="10.1186/1471-2148-10-377">
4763                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>
4764               </reference>
4765               <reference>
4766               </reference>
4767               <clade>
4768                 <name>Stramenopiles &amp; Alveolata</name>
4769                 <clade>
4770                   <taxonomy>
4771                     <id provider="uniprot">33630</id>
4772                     <scientific_name>Alveolata</scientific_name>
4773                     <rank>superphylum</rank>
4774                   </taxonomy>
4775                   <clade>
4776                     <name>Apicomplexa &amp; Dinophyceae</name>
4777                     <clade>
4778                       <taxonomy>
4779                         <id provider="uniprot">5794</id>
4780                         <scientific_name>Apicomplexa</scientific_name>
4781                         <rank>phylum</rank>
4782                       </taxonomy>
4783                       <reference doi="10.1101/gr.083386.108">
4784                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>
4785                       </reference>
4786                       <reference>
4787                       </reference>
4788                       <clade>
4789                         <name>Aconoidasida &amp; Coccidia</name>
4790                         <clade>
4791                           <taxonomy>
4792                             <id provider="uniprot">422676</id>
4793                             <scientific_name>Aconoidasida</scientific_name>
4794                             <authority>Mehlhorn et al. 1980</authority>
4795                             <synonym>Hematozoa</synonym>
4796                             <rank>class</rank>
4797                           </taxonomy>
4798                           <clade>
4799                             <taxonomy>
4800                               <id provider="uniprot">5820</id>
4801                               <scientific_name>Plasmodium</scientific_name>
4802                               <rank>genus</rank>
4803                             </taxonomy>
4804                             <clade>
4805                               <taxonomy>
4806                                 <id provider="uniprot">5825</id>
4807                                 <code>PLACH</code>
4808                                 <scientific_name>Plasmodium chabaudi</scientific_name>
4809                                 <rank>species</rank>
4810                               </taxonomy>
4811                             </clade>
4812                             <clade>
4813                               <taxonomy>
4814                                 <id provider="uniprot">36329</id>
4815                                 <code>PLAF7</code>
4816                                 <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>
4817                               </taxonomy>
4818                             </clade>
4819                             <clade>
4820                               <taxonomy>
4821                                 <id provider="uniprot">73239</id>
4822                                 <code>PLAYO</code>
4823                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>
4824                                 <rank>subspecies</rank>
4825                               </taxonomy>
4826                             </clade>
4827                             <clade>
4828                               <taxonomy>
4829                                 <id provider="uniprot">126793</id>
4830                                 <code>PLAVS</code>
4831                                 <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>
4832                               </taxonomy>
4833                             </clade>
4834                           </clade>
4835                           <clade>
4836                             <taxonomy>
4837                               <id provider="uniprot">5863</id>
4838                               <scientific_name>Piroplasmida</scientific_name>
4839                               <common_name>Piroplasmids</common_name>
4840                               <rank>order</rank>
4841                             </taxonomy>
4842                             <clade>
4843                               <name>Theileria</name>
4844                               <taxonomy>
4845                                 <id provider="uniprot">5873</id>
4846                                 <scientific_name>Theileria</scientific_name>
4847                                 <rank>genus</rank>
4848                               </taxonomy>
4849                               <clade>
4850                                 <taxonomy>
4851                                   <id provider="uniprot">5874</id>
4852                                   <code>THEAN</code>
4853                                   <scientific_name>Theileria annulata</scientific_name>
4854                                   <rank>species</rank>
4855                                 </taxonomy>
4856                               </clade>
4857                               <clade>
4858                                 <taxonomy>
4859                                   <id provider="uniprot">5875</id>
4860                                   <code>THEPA</code>
4861                                   <scientific_name>Theileria parva</scientific_name>
4862                                   <common_name>East coast fever infection agent</common_name>
4863                                   <rank>species</rank>
4864                                 </taxonomy>
4865                               </clade>
4866                             </clade>
4867                             <clade>
4868                               <taxonomy>
4869                                 <id provider="uniprot">5865</id>
4870                                 <code>BABBO</code>
4871                                 <scientific_name>Babesia bovis</scientific_name>
4872                                 <rank>species</rank>
4873                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>
4874                               </taxonomy>
4875                             </clade>
4876                           </clade>
4877                         </clade>
4878                         <clade>
4879                           <taxonomy>
4880                             <id provider="uniprot">5796</id>
4881                             <scientific_name>Coccidia</scientific_name>
4882                             <common_name>coccidians</common_name>
4883                             <rank>subclass</rank>
4884                           </taxonomy>
4885                           <reference doi="10.1093/molbev/msn213">
4886                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
4887                           </reference>
4888                           <reference>
4889                           </reference>
4890                           <clade>
4891                             <taxonomy>
4892                               <id provider="uniprot">5802</id>
4893                               <code>EIMTE</code>
4894                               <scientific_name>Eimeria tenella</scientific_name>
4895                               <common_name>Coccidian parasite</common_name>
4896                               <rank>species</rank>
4897                               <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
4898                             </taxonomy>
4899                           </clade>
4900                           <clade>
4901                             <taxonomy>
4902                               <id provider="uniprot">5811</id>
4903                               <code>TOXGO</code>
4904                               <scientific_name>Toxoplasma gondii</scientific_name>
4905                               <rank>species</rank>
4906                             </taxonomy>
4907                           </clade>
4908                         </clade>
4909                       </clade>
4910                       <clade>
4911                         <taxonomy>
4912                           <id provider="uniprot">5806</id>
4913                           <scientific_name>Cryptosporidium</scientific_name>
4914                           <rank>genus</rank>
4915                         </taxonomy>
4916                         <clade>
4917                           <taxonomy>
4918                             <id provider="uniprot">237895</id>
4919                             <code>CRYHO</code>
4920                             <scientific_name>Cryptosporidium hominis</scientific_name>
4921                             <rank>species</rank>
4922                           </taxonomy>
4923                         </clade>
4924                         <clade>
4925                           <taxonomy>
4926                             <id provider="uniprot">5807</id>
4927                             <code>CRYPV</code>
4928                             <scientific_name>Cryptosporidium parvum</scientific_name>
4929                             <rank>species</rank>
4930                           </taxonomy>
4931                         </clade>
4932                         <clade>
4933                           <taxonomy>
4934                             <id provider="uniprot">353152</id>
4935                             <code>CRYPI</code>
4936                             <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>
4937                           </taxonomy>
4938                         </clade>
4939                       </clade>
4940                     </clade>
4941                     <clade>
4942                       <taxonomy>
4943                         <id provider="uniprot">2864</id>
4944                         <scientific_name>Dinophyceae</scientific_name>
4945                         <authority>Fritsch, 1927</authority>
4946                         <common_name>dinoflagellates</common_name>
4947                         <synonym>Chromophyta</synonym>
4948                         <synonym>Dinoflagellata</synonym>
4949                         <synonym>Pyrrophyta</synonym>
4950                         <rank>class</rank>
4951                       </taxonomy>
4952                       <clade>
4953                         <taxonomy>
4954                           <id provider="uniprot">2866</id>
4955                           <code>CRYCO</code>
4956                           <scientific_name>Crypthecodinium cohnii</scientific_name>
4957                           <common_name>Dinoflagellate</common_name>
4958                           <rank>species</rank>
4959                           <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>
4960                         </taxonomy>
4961                       </clade>
4962                       <clade>
4963                         <taxonomy>
4964                           <id provider="uniprot">2923</id>
4965                           <code>THOHE</code>
4966                           <scientific_name>Thoracosphaera heimii</scientific_name>
4967                           <common_name>Dinoflagellate</common_name>
4968                           <rank>species</rank>
4969                           <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>
4970                         </taxonomy>
4971                       </clade>
4972                     </clade>
4973                   </clade>
4974                   <clade>
4975                     <taxonomy>
4976                       <id provider="uniprot">5878</id>
4977                       <scientific_name>Ciliophora</scientific_name>
4978                       <common_name>ciliates</common_name>
4979                       <rank>phylum</rank>
4980                     </taxonomy>
4981                     <clade>
4982                       <taxonomy>
4983                         <id provider="uniprot">431838</id>
4984                         <scientific_name>Intramacronucleata</scientific_name>
4985                         <rank>subphylum</rank>
4986                       </taxonomy>
4987                       <clade>
4988                         <taxonomy>
4989                           <id provider="uniprot">6020</id>
4990                           <scientific_name>Oligohymenophorea</scientific_name>
4991                           <rank>class</rank>
4992                         </taxonomy>
4993                         <clade>
4994                           <taxonomy>
4995                             <id provider="uniprot">5888</id>
4996                             <code>PARTE</code>
4997                             <scientific_name>Paramecium tetraurelia</scientific_name>
4998                             <rank>species</rank>
4999                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>
5000                           </taxonomy>
5001                         </clade>
5002                         <clade>
5003                           <taxonomy>
5004                             <id provider="uniprot">312017</id>
5005                             <code>TETTS</code>
5006                             <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>
5007                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>
5008                           </taxonomy>
5009                         </clade>
5010                       </clade>
5011                       <clade>
5012                         <taxonomy>
5013                           <id provider="uniprot">1172189</id>
5014                           <code>OTRXX</code>
5015                           <scientific_name>Oxytricha trifallax</scientific_name>
5016                           <authority>Stein, 1859</authority>
5017                           <rank>species</rank>
5018                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>
5019                         </taxonomy>
5020                       </clade>
5021                     </clade>
5022                     <clade>
5023                       <taxonomy>
5024                         <id provider="uniprot">5961</id>
5025                         <code>BLEJA</code>
5026                         <scientific_name>Blepharisma japonicum</scientific_name>
5027                         <rank>species</rank>
5028                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>
5029                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>
5030                       </taxonomy>
5031                     </clade>
5032                   </clade>
5033                 </clade>
5034                 <clade>
5035                   <taxonomy>
5036                     <id provider="uniprot">33634</id>
5037                     <scientific_name>Stramenopiles</scientific_name>
5038                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>
5039                     <synonym>Chromophyta</synonym>
5040                     <synonym>heterokonts</synonym>
5041                     <synonym>Heterokontophyta</synonym>
5042                   </taxonomy>
5043                   <clade>
5044                     <name>Labyrinthulomycetes &amp; Ochrophyta &amp; Oomycetes</name>
5045                     <clade>
5046                       <name>Ochrophyta &amp; Oomycetes</name>
5047                       <reference doi="10.1016/j.protis.2008.11.004">
5048                         <desc>Seven Gene Phylogeny of Heterokonts</desc>
5049                       </reference>
5050                       <reference>
5051                       </reference>
5052                       <clade>
5053                         <taxonomy>
5054                           <scientific_name>Ochrophyta</scientific_name>
5055                         </taxonomy>
5056                         <clade>
5057                           <taxonomy>
5058                             <id provider="uniprot">2836</id>
5059                             <scientific_name>Bacillariophyta</scientific_name>
5060                             <common_name>diatoms</common_name>
5061                             <rank>class</rank>
5062                           </taxonomy>
5063                           <clade>
5064                             <taxonomy>
5065                               <id provider="uniprot">33850</id>
5066                               <scientific_name>Bacillariophycidae</scientific_name>
5067                             </taxonomy>
5068                             <clade>
5069                               <taxonomy>
5070                                 <id provider="uniprot">186039</id>
5071                                 <code>FCYXX</code>
5072                                 <scientific_name>Fragilariopsis cylindrus</scientific_name>
5073                                 <authority>Krieger</authority>
5074                                 <synonym>Nitzschia cylindrus</synonym>
5075                                 <rank>species</rank>
5076                                 <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>
5077                               </taxonomy>
5078                             </clade>
5079                             <clade>
5080                               <taxonomy>
5081                                 <id provider="uniprot">2850</id>
5082                                 <code>PHATR</code>
5083                                 <scientific_name>Phaeodactylum tricornutum</scientific_name>
5084                                 <authority>Bohlin</authority>
5085                                 <rank>species</rank>
5086                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>
5087                               </taxonomy>
5088                             </clade>
5089                           </clade>
5090                           <clade>
5091                             <taxonomy>
5092                               <id provider="uniprot">35127</id>
5093                               <scientific_name>Thalassiosira</scientific_name>
5094                               <rank>genus</rank>
5095                             </taxonomy>
5096                             <clade>
5097                               <taxonomy>
5098                                 <id provider="uniprot">35128</id>
5099                                 <code>THAPS</code>
5100                                 <scientific_name>Thalassiosira pseudonana</scientific_name>
5101                                 <authority>Hasle &amp; Heimdal</authority>
5102                                 <common_name>Marine diatom</common_name>
5103                                 <synonym>Cyclotella nana</synonym>
5104                                 <rank>species</rank>
5105                                 <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>
5106                               </taxonomy>
5107                             </clade>
5108                             <clade>
5109                               <taxonomy>
5110                                 <id provider="uniprot">159749</id>
5111                                 <code>THAOC</code>
5112                                 <scientific_name>Thalassiosira oceanica</scientific_name>
5113                                 <common_name>Marine diatom</common_name>
5114                                 <rank>species</rank>
5115                               </taxonomy>
5116                             </clade>
5117                           </clade>
5118                         </clade>
5119                         <clade>
5120                           <name>Pelagophyceae &amp; Phaeophyceae</name>
5121                           <reference doi="10.1128/AEM.06952-11">
5122                             <desc>Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean</desc>
5123                           </reference>
5124                           <reference>
5125                           </reference>
5126                           <clade>
5127                             <taxonomy>
5128                               <id provider="uniprot">44056</id>
5129                               <code>AURAN</code>
5130                               <scientific_name>Aureococcus anophagefferens</scientific_name>
5131                               <authority>Hargraves &amp; Sieburth</authority>
5132                               <common_name>Harmful bloom alga</common_name>
5133                               <rank>species</rank>
5134                               <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>
5135                             </taxonomy>
5136                           </clade>
5137                           <clade>
5138                             <taxonomy>
5139                               <id provider="uniprot">2880</id>
5140                               <code>ECTSI</code>
5141                               <scientific_name>Ectocarpus siliculosus</scientific_name>
5142                               <common_name>Brown alga</common_name>
5143                               <rank>species</rank>
5144                               <uri>http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg</uri>
5145                             </taxonomy>
5146                           </clade>
5147                         </clade>
5148                       </clade>
5149                       <clade>
5150                         <taxonomy>
5151                           <id provider="uniprot">4762</id>
5152                           <scientific_name>Oomycetes</scientific_name>
5153                         </taxonomy>
5154                         <clade>
5155                           <taxonomy>
5156                             <id provider="uniprot">4776</id>
5157                             <scientific_name>Peronosporales</scientific_name>
5158                             <rank>order</rank>
5159                           </taxonomy>
5160                           <clade>
5161                             <taxonomy>
5162                               <id provider="uniprot">4783</id>
5163                               <scientific_name>Phytophthora</scientific_name>
5164                               <rank>genus</rank>
5165                             </taxonomy>
5166                             <clade>
5167                               <taxonomy>
5168                                 <id provider="uniprot">4787</id>
5169                                 <code>PHYIN</code>
5170                                 <scientific_name>Phytophthora infestans</scientific_name>
5171                                 <authority>(Mont.) de Bary 1876</authority>
5172                                 <common_name>Potato late blight fungus</common_name>
5173                                 <rank>species</rank>
5174                                 <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>
5175                               </taxonomy>
5176                             </clade>
5177                             <clade>
5178                               <taxonomy>
5179                                 <id provider="uniprot">164328</id>
5180                                 <code>PHYRM</code>
5181                                 <scientific_name>Phytophthora ramorum</scientific_name>
5182                                 <common_name>Sudden oak death agent</common_name>
5183                                 <rank>species</rank>
5184                                 <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>
5185                               </taxonomy>
5186                             </clade>
5187                             <clade>
5188                               <taxonomy>
5189                                 <id provider="uniprot">67593</id>
5190                                 <code>PHYSO</code>
5191                                 <scientific_name>Phytophthora sojae</scientific_name>
5192                                 <common_name>Soybean stem and root rot agent</common_name>
5193                                 <synonym>Phytophthora megasperma f. sp. glycines</synonym>
5194                                 <rank>species</rank>
5195                                 <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>
5196                               </taxonomy>
5197                             </clade>
5198                             <clade>
5199                               <taxonomy>
5200                                 <id provider="uniprot">4785</id>
5201                                 <code>PHYCI</code>
5202                                 <scientific_name>Phytophthora cinnamomi</scientific_name>
5203                                 <common_name>Cinnamon fungus</common_name>
5204                                 <rank>species</rank>
5205                                 <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>
5206                               </taxonomy>
5207                             </clade>
5208                             <clade>
5209                               <taxonomy>
5210                                 <id provider="uniprot">4784</id>
5211                                 <code>PHYCP</code>
5212                                 <scientific_name>Phytophthora capsici</scientific_name>
5213                                 <rank>species</rank>
5214                                 <uri>http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg</uri>
5215                               </taxonomy>
5216                             </clade>
5217                           </clade>
5218                           <clade>
5219                             <taxonomy>
5220                               <id provider="uniprot">559515</id>
5221                               <code>HYAAE</code>
5222                               <scientific_name>Hyaloperonospora arabidopsidis (strain Emoy2)</scientific_name>
5223                               <common_name>Downy mildew agent</common_name>
5224                               <synonym>Peronospora arabidopsidis</synonym>
5225                               <uri>http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg</uri>
5226                             </taxonomy>
5227                           </clade>
5228                         </clade>
5229                         <clade>
5230                           <taxonomy>
5231                             <id provider="uniprot">65071</id>
5232                             <code>PYTUL</code>
5233                             <scientific_name>Pythium ultimum</scientific_name>
5234                             <rank>species</rank>
5235                             <uri>http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg</uri>
5236                           </taxonomy>
5237                         </clade>
5238                       </clade>
5239                     </clade>
5240                     <clade>
5241                       <taxonomy>
5242                         <id provider="uniprot">33674</id>
5243                         <scientific_name>Thraustochytriaceae</scientific_name>
5244                         <synonym>Thraustochytriales</synonym>
5245                         <rank>family</rank>
5246                       </taxonomy>
5247                       <clade>
5248                         <taxonomy>
5249                           <id provider="uniprot">702273</id>
5250                           <code>AKEXX</code>
5251                           <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>
5252                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>
5253                         </taxonomy>
5254                       </clade>
5255                       <clade>
5256                         <taxonomy>
5257                           <id provider="uniprot">876976</id>
5258                           <code>SAGXX</code>
5259                           <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>
5260                           <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>
5261                         </taxonomy>
5262                       </clade>
5263                       <clade>
5264                         <taxonomy>
5265                           <id provider="uniprot">87102</id>
5266                           <code>ALIXX</code>
5267                           <scientific_name>Aurantiochytrium limacinum</scientific_name>
5268                           <synonym>Schizochytrium limacinum</synonym>
5269                           <rank>species</rank>
5270                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>
5271                         </taxonomy>
5272                       </clade>
5273                     </clade>
5274                   </clade>
5275                   <clade>
5276                     <taxonomy>
5277                       <id provider="uniprot">12968</id>
5278                       <code>BLAHO</code>
5279                       <scientific_name>Blastocystis hominis</scientific_name>
5280                       <rank>species</rank>
5281                     </taxonomy>
5282                   </clade>
5283                 </clade>
5284               </clade>
5285               <clade>
5286                 <taxonomy>
5287                   <id provider="uniprot">543769</id>
5288                   <scientific_name>Rhizaria</scientific_name>
5289                 </taxonomy>
5290                 <clade>
5291                   <taxonomy>
5292                     <id provider="uniprot">71427</id>
5293                     <scientific_name>Allogromia laticollaris</scientific_name>
5294                     <rank>species</rank>
5295                     <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>
5296                   </taxonomy>
5297                 </clade>
5298                 <clade>
5299                   <taxonomy>
5300                     <id provider="uniprot">227086</id>
5301                     <code>BIGNA</code>
5302                     <scientific_name>Bigelowiella natans</scientific_name>
5303                     <common_name>Pedinomonas minutissima</common_name>
5304                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>
5305                     <synonym>Pedinomonas minutissima</synonym>
5306                     <rank>species</rank>
5307                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>
5308                   </taxonomy>
5309                 </clade>
5310               </clade>
5311             </clade>
5312           </clade>
5313           <clade>
5314             <name>Excavata</name>
5315             <reference doi="10.1038/nature04546">
5316             </reference>
5317             <clade>
5318               <name>Kinetoplastida &amp; Heterolobosea</name>
5319               <clade>
5320                 <taxonomy>
5321                   <id provider="uniprot">5653</id>
5322                   <scientific_name>Kinetoplastida</scientific_name>
5323                   <common_name>kinetoplasts</common_name>
5324                   <rank>order</rank>
5325                 </taxonomy>
5326                 <clade>
5327                   <taxonomy>
5328                     <id provider="uniprot">5654</id>
5329                     <scientific_name>Trypanosomatidae</scientific_name>
5330                     <rank>family</rank>
5331                   </taxonomy>
5332                   <clade>
5333                     <taxonomy>
5334                       <id provider="uniprot">5690</id>
5335                       <scientific_name>Trypanosoma</scientific_name>
5336                       <rank>genus</rank>
5337                     </taxonomy>
5338                     <clade>
5339                       <taxonomy>
5340                         <id provider="uniprot">999953</id>
5341                         <code>TRYB2</code>
5342                         <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>
5343                         <rank>strain</rank>
5344                       </taxonomy>
5345                     </clade>
5346                     <clade>
5347                       <taxonomy>
5348                         <id provider="uniprot">5693</id>
5349                         <code>TRYCR</code>
5350                         <scientific_name>Trypanosoma cruzi</scientific_name>
5351                         <rank>species</rank>
5352                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>
5353                       </taxonomy>
5354                     </clade>
5355                   </clade>
5356                   <clade>
5357                     <taxonomy>
5358                       <id provider="uniprot">5658</id>
5359                       <scientific_name>Leishmania</scientific_name>
5360                       <rank>genus</rank>
5361                     </taxonomy>
5362                     <clade>
5363                       <taxonomy>
5364                         <id provider="uniprot">5664</id>
5365                         <code>LEIMA</code>
5366                         <scientific_name>Leishmania major</scientific_name>
5367                         <rank>species</rank>
5368                       </taxonomy>
5369                     </clade>
5370                     <clade>
5371                       <taxonomy>
5372                         <id provider="uniprot">5671</id>
5373                         <code>LEIIN</code>
5374                         <scientific_name>Leishmania infantum</scientific_name>
5375                         <rank>species</rank>
5376                       </taxonomy>
5377                     </clade>
5378                     <clade>
5379                       <taxonomy>
5380                         <id provider="uniprot">5660</id>
5381                         <code>LEIBR</code>
5382                         <scientific_name>Leishmania braziliensis</scientific_name>
5383                         <rank>species</rank>
5384                       </taxonomy>
5385                     </clade>
5386                   </clade>
5387                 </clade>
5388                 <clade>
5389                   <taxonomy>
5390                     <id provider="uniprot">75058</id>
5391                     <code>BODSA</code>
5392                     <scientific_name>Bodo saltans</scientific_name>
5393                     <common_name>Flagellated protozoan</common_name>
5394                     <rank>species</rank>
5395                     <uri>http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg</uri>
5396                   </taxonomy>
5397                 </clade>
5398               </clade>
5399               <clade>
5400                 <taxonomy>
5401                   <id provider="uniprot">5762</id>
5402                   <code>NAEGR</code>
5403                   <scientific_name>Naegleria gruberi</scientific_name>
5404                   <common_name>Amoeba</common_name>
5405                   <rank>species</rank>
5406                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>
5407                 </taxonomy>
5408               </clade>
5409             </clade>
5410             <clade>
5411               <name>Metamonada</name>
5412               <clade>
5413                 <taxonomy>
5414                   <id provider="uniprot">184922</id>
5415                   <code>GIAIC</code>
5416                   <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>
5417                   <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>
5418                   <synonym>Giardia lamblia</synonym>
5419                   <rank>species</rank>
5420                 </taxonomy>
5421               </clade>
5422               <clade>
5423                 <taxonomy>
5424                   <id provider="uniprot">5722</id>
5425                   <code>TRIVA</code>
5426                   <scientific_name>Trichomonas vaginalis</scientific_name>
5427                   <rank>species</rank>
5428                 </taxonomy>
5429               </clade>
5430             </clade>
5431           </clade>
5432           <clade>
5433             <taxonomy>
5434               <id provider="uniprot">554296</id>
5435               <scientific_name>Apusozoa</scientific_name>
5436             </taxonomy>
5437             <reference doi="10.1016/j.protis.2008.06.002">
5438               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>
5439             </reference>
5440             <clade>
5441               <taxonomy>
5442                 <id provider="uniprot">554453</id>
5443                 <scientific_name>Planomonas micra</scientific_name>
5444                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>
5445                 <synonym>Apusomonadidae sp. micra</synonym>
5446                 <rank>species</rank>
5447               </taxonomy>
5448             </clade>
5449             <clade>
5450               <taxonomy>
5451                 <id provider="uniprot">529818</id>
5452                 <code>TTRXX</code>
5453                 <scientific_name>Thecamonas trahens</scientific_name>
5454                 <authority>Larsen &amp; Patterson 1990</authority>
5455                 <synonym>Amastigomonas trahens</synonym>
5456                 <rank>species</rank>
5457                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>
5458               </taxonomy>
5459             </clade>
5460           </clade>
5461         </clade>
5462       </clade>
5463       <clade>
5464         <taxonomy>
5465           <id provider="uniprot">2157</id>
5466           <scientific_name>Archaea</scientific_name>
5467           <rank>superkingdom</rank>
5468         </taxonomy>
5469         <clade>
5470           <name>a_62</name>
5471           <clade>
5472             <name>a_56</name>
5473             <clade>
5474               <taxonomy>
5475                 <id provider="uniprot">28890</id>
5476                 <scientific_name>Euryarchaeota</scientific_name>
5477                 <rank>phylum</rank>
5478               </taxonomy>
5479               <clade>
5480                 <name>a_44</name>
5481                 <clade>
5482                   <name>a_28</name>
5483                   <clade>
5484                     <name>a_26</name>
5485                     <clade>
5486                       <taxonomy>
5487                         <id provider="uniprot">224756</id>
5488                         <scientific_name>Methanomicrobia</scientific_name>
5489                         <rank>class</rank>
5490                       </taxonomy>
5491                       <clade>
5492                         <name>a_14</name>
5493                         <clade>
5494                           <name>a_12</name>
5495                           <clade>
5496                             <taxonomy>
5497                               <id provider="uniprot">2206</id>
5498                               <scientific_name>Methanosarcinaceae</scientific_name>
5499                               <rank>family</rank>
5500                             </taxonomy>
5501                             <clade>
5502                               <taxonomy>
5503                                 <id provider="uniprot">2207</id>
5504                                 <scientific_name>Methanosarcina</scientific_name>
5505                                 <rank>genus</rank>
5506                               </taxonomy>
5507                               <clade>
5508                                 <name>a_2</name>
5509                                 <clade>
5510                                   <taxonomy>
5511                                     <id provider="uniprot">2214</id>
5512                                     <code>METAC</code>
5513                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
5514                                     <rank>species</rank>
5515                                   </taxonomy>
5516                                 </clade>
5517                                 <clade>
5518                                   <taxonomy>
5519                                     <id provider="uniprot">269797</id>
5520                                     <code>METBF</code>
5521                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
5522                                   </taxonomy>
5523                                 </clade>
5524                               </clade>
5525                               <clade>
5526                                 <taxonomy>
5527                                   <id provider="uniprot">2209</id>
5528                                   <code>METMA</code>
5529                                   <scientific_name>Methanosarcina mazei</scientific_name>
5530                                   <synonym>Methanosarcina frisia</synonym>
5531                                   <rank>species</rank>
5532                                 </taxonomy>
5533                               </clade>
5534                             </clade>
5535                             <clade>
5536                               <taxonomy>
5537                                 <id provider="uniprot">259564</id>
5538                                 <code>METBU</code>
5539                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
5540                               </taxonomy>
5541                             </clade>
5542                           </clade>
5543                           <clade>
5544                             <name>a_11</name>
5545                             <taxonomy>
5546                               <id provider="uniprot">2191</id>
5547                               <scientific_name>Methanomicrobiales</scientific_name>
5548                               <rank>order</rank>
5549                             </taxonomy>
5550                             <clade>
5551                               <name>a_9</name>
5552                               <clade>
5553                                 <taxonomy>
5554                                   <id provider="uniprot">456442</id>
5555                                   <code>METB6</code>
5556                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
5557                                 </taxonomy>
5558                               </clade>
5559                               <clade>
5560                                 <taxonomy>
5561                                   <id provider="uniprot">2203</id>
5562                                   <code>METHU</code>
5563                                   <scientific_name>Methanospirillum hungatei</scientific_name>
5564                                   <rank>species</rank>
5565                                 </taxonomy>
5566                               </clade>
5567                             </clade>
5568                             <clade>
5569                               <taxonomy>
5570                                 <id provider="uniprot">368407</id>
5571                                 <code>METMJ</code>
5572                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
5573                               </taxonomy>
5574                             </clade>
5575                           </clade>
5576                         </clade>
5577                         <clade>
5578                           <taxonomy>
5579                             <id provider="uniprot">410358</id>
5580                             <code>METLZ</code>
5581                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
5582                           </taxonomy>
5583                         </clade>
5584                       </clade>
5585                       <clade>
5586                         <taxonomy>
5587                           <id provider="uniprot">349307</id>
5588                           <code>METTP</code>
5589                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
5590                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
5591                         </taxonomy>
5592                       </clade>
5593                     </clade>
5594                     <clade>
5595                       <taxonomy>
5596                         <id provider="uniprot">2236</id>
5597                         <scientific_name>Halobacteriaceae</scientific_name>
5598                         <rank>family</rank>
5599                       </taxonomy>
5600                       <clade>
5601                         <name>a_23</name>
5602                         <clade>
5603                           <name>a_19</name>
5604                           <clade>
5605                             <taxonomy>
5606                               <id provider="uniprot">2238</id>
5607                               <code>HALMA</code>
5608                               <scientific_name>Haloarcula marismortui</scientific_name>
5609                               <synonym>Halobacterium marismortui</synonym>
5610                               <rank>species</rank>
5611                             </taxonomy>
5612                           </clade>
5613                           <clade>
5614                             <taxonomy>
5615                               <id provider="uniprot">2257</id>
5616                               <code>NATPH</code>
5617                               <scientific_name>Natronomonas pharaonis</scientific_name>
5618                               <common_name>Natronobacterium pharaonis</common_name>
5619                               <rank>species</rank>
5620                             </taxonomy>
5621                           </clade>
5622                         </clade>
5623                         <clade>
5624                           <name>a_22</name>
5625                           <taxonomy>
5626                             <id provider="uniprot">2239</id>
5627                             <scientific_name>Halobacterium</scientific_name>
5628                             <rank>genus</rank>
5629                           </taxonomy>
5630                           <clade>
5631                             <taxonomy>
5632                               <id provider="uniprot">478009</id>
5633                               <code>HALS3</code>
5634                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
5635                             </taxonomy>
5636                           </clade>
5637                           <clade>
5638                             <taxonomy>
5639                               <id provider="uniprot">2243</id>
5640                               <code>HALSP</code>
5641                               <scientific_name>Halobacterium sp.</scientific_name>
5642                               <rank>species</rank>
5643                             </taxonomy>
5644                           </clade>
5645                         </clade>
5646                       </clade>
5647                       <clade>
5648                         <taxonomy>
5649                           <id provider="uniprot">362976</id>
5650                           <code>HALWD</code>
5651                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
5652                         </taxonomy>
5653                       </clade>
5654                     </clade>
5655                   </clade>
5656                   <clade>
5657                     <taxonomy>
5658                       <id provider="uniprot">224325</id>
5659                       <code>ARCFU</code>
5660                       <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>
5661                       <rank>strain</rank>
5662                     </taxonomy>
5663                   </clade>
5664                 </clade>
5665                 <clade>
5666                   <name>a_43</name>
5667                   <clade>
5668                     <name>a_41</name>
5669                     <clade>
5670                       <taxonomy>
5671                         <id provider="uniprot">2182</id>
5672                         <scientific_name>Methanococcales</scientific_name>
5673                         <rank>order</rank>
5674                       </taxonomy>
5675                       <clade>
5676                         <name>a_31</name>
5677                         <clade>
5678                           <taxonomy>
5679                             <id provider="uniprot">2190</id>
5680                             <code>METJA</code>
5681                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
5682                             <synonym>Methanococcus jannaschii</synonym>
5683                             <rank>species</rank>
5684                           </taxonomy>
5685                         </clade>
5686                         <clade>
5687                           <taxonomy>
5688                             <id provider="uniprot">419665</id>
5689                             <code>META3</code>
5690                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
5691                           </taxonomy>
5692                         </clade>
5693                       </clade>
5694                       <clade>
5695                         <name>a_34</name>
5696                         <taxonomy>
5697                           <id provider="uniprot">2184</id>
5698                           <scientific_name>Methanococcus</scientific_name>
5699                           <rank>genus</rank>
5700                         </taxonomy>
5701                         <clade>
5702                           <taxonomy>
5703                             <id provider="uniprot">39152</id>
5704                             <code>METMP</code>
5705                             <scientific_name>Methanococcus maripaludis</scientific_name>
5706                             <synonym>Methanococcus deltae</synonym>
5707                             <rank>species</rank>
5708                           </taxonomy>
5709                         </clade>
5710                         <clade>
5711                           <taxonomy>
5712                             <id provider="uniprot">406327</id>
5713                             <code>METVS</code>
5714                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
5715                           </taxonomy>
5716                         </clade>
5717                       </clade>
5718                     </clade>
5719                     <clade>
5720                       <name>a_40</name>
5721                       <taxonomy>
5722                         <id provider="uniprot">2159</id>
5723                         <scientific_name>Methanobacteriaceae</scientific_name>
5724                         <rank>family</rank>
5725                       </taxonomy>
5726                       <clade>
5727                         <name>a_38</name>
5728                         <clade>
5729                           <taxonomy>
5730                             <id provider="uniprot">420247</id>
5731                             <code>METS3</code>
5732                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
5733                           </taxonomy>
5734                         </clade>
5735                         <clade>
5736                           <taxonomy>
5737                             <id provider="uniprot">339860</id>
5738                             <code>METST</code>
5739                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
5740                           </taxonomy>
5741                         </clade>
5742                       </clade>
5743                       <clade>
5744                         <taxonomy>
5745                           <id provider="uniprot">187420</id>
5746                           <code>METTH</code>
5747                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
5748                           <synonym>Methanobacterium thermoautotrophicum</synonym>
5749                         </taxonomy>
5750                       </clade>
5751                     </clade>
5752                   </clade>
5753                   <clade>
5754                     <taxonomy>
5755                       <id provider="uniprot">2320</id>
5756                       <code>METKA</code>
5757                       <scientific_name>Methanopyrus kandleri</scientific_name>
5758                       <rank>species</rank>
5759                     </taxonomy>
5760                   </clade>
5761                 </clade>
5762               </clade>
5763               <clade>
5764                 <taxonomy>
5765                   <id provider="uniprot">2259</id>
5766                   <scientific_name>Thermococcaceae</scientific_name>
5767                   <rank>family</rank>
5768                 </taxonomy>
5769                 <clade>
5770                   <name>PYRFU &amp; THEKO &amp; PYRAB &amp; PYRHO</name>
5771                   <clade>
5772                     <name>PYRFU &amp; THEKO</name>
5773                     <clade>
5774                       <taxonomy>
5775                         <id provider="uniprot">2261</id>
5776                         <code>PYRFU</code>
5777                         <scientific_name>Pyrococcus furiosus</scientific_name>
5778                         <rank>species</rank>
5779                       </taxonomy>
5780                     </clade>
5781                     <clade>
5782                       <taxonomy>
5783                         <id provider="uniprot">69014</id>
5784                         <code>THEKO</code>
5785                         <scientific_name>Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
5786                         <synonym>Pyrococcus kodakaraensis (strain KOD1)</synonym>
5787                       </taxonomy>
5788                     </clade>
5789                   </clade>
5790                   <clade>
5791                     <taxonomy>
5792                       <id provider="uniprot">2260</id>
5793                       <scientific_name>Pyrococcus</scientific_name>
5794                       <rank>genus</rank>
5795                     </taxonomy>
5796                     <clade>
5797                       <taxonomy>
5798                         <id provider="uniprot">29292</id>
5799                         <code>PYRAB</code>
5800                         <scientific_name>Pyrococcus abyssi</scientific_name>
5801                         <rank>species</rank>
5802                       </taxonomy>
5803                     </clade>
5804                     <clade>
5805                       <taxonomy>
5806                         <id provider="uniprot">53953</id>
5807                         <code>PYRHO</code>
5808                         <scientific_name>Pyrococcus horikoshii</scientific_name>
5809                         <rank>species</rank>
5810                       </taxonomy>
5811                     </clade>
5812                   </clade>
5813                 </clade>
5814                 <clade>
5815                   <taxonomy>
5816                     <id provider="uniprot">523850</id>
5817                     <code>THEON</code>
5818                     <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>
5819                   </taxonomy>
5820                 </clade>
5821               </clade>
5822             </clade>
5823             <clade>
5824               <name>a_55</name>
5825               <clade>
5826                 <taxonomy>
5827                   <id provider="uniprot">228908</id>
5828                   <code>NANEQ</code>
5829                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
5830                 </taxonomy>
5831               </clade>
5832               <clade>
5833                 <taxonomy>
5834                   <id provider="uniprot">436308</id>
5835                   <code>NITMS</code>
5836                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
5837                 </taxonomy>
5838               </clade>
5839             </clade>
5840           </clade>
5841           <clade>
5842             <taxonomy>
5843               <id provider="uniprot">2301</id>
5844               <scientific_name>Thermoplasmatales</scientific_name>
5845               <rank>order</rank>
5846             </taxonomy>
5847             <clade>
5848               <name>a_59</name>
5849               <taxonomy>
5850                 <id provider="uniprot">2302</id>
5851                 <scientific_name>Thermoplasma</scientific_name>
5852                 <rank>genus</rank>
5853               </taxonomy>
5854               <clade>
5855                 <taxonomy>
5856                   <id provider="uniprot">273075</id>
5857                   <code>THEAC</code>
5858                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
5859                 </taxonomy>
5860               </clade>
5861               <clade>
5862                 <taxonomy>
5863                   <id provider="uniprot">273116</id>
5864                   <code>THEVO</code>
5865                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
5866                 </taxonomy>
5867               </clade>
5868             </clade>
5869             <clade>
5870               <taxonomy>
5871                 <id provider="uniprot">263820</id>
5872                 <code>PICTO</code>
5873                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
5874               </taxonomy>
5875             </clade>
5876           </clade>
5877         </clade>
5878         <clade>
5879           <name>a_93</name>
5880           <clade>
5881             <taxonomy>
5882               <id provider="uniprot">183924</id>
5883               <scientific_name>Thermoprotei</scientific_name>
5884               <rank>class</rank>
5885             </taxonomy>
5886             <clade>
5887               <name>a_83</name>
5888               <clade>
5889                 <name>a_81</name>
5890                 <clade>
5891                   <taxonomy>
5892                     <id provider="uniprot">2267</id>
5893                     <scientific_name>Thermoproteaceae</scientific_name>
5894                     <rank>family</rank>
5895                   </taxonomy>
5896                   <clade>
5897                     <name>a_71</name>
5898                     <clade>
5899                       <name>a_67</name>
5900                       <taxonomy>
5901                         <id provider="uniprot">2276</id>
5902                         <scientific_name>Pyrobaculum</scientific_name>
5903                         <rank>genus</rank>
5904                       </taxonomy>
5905                       <clade>
5906                         <name>a_65</name>
5907                         <clade>
5908                           <taxonomy>
5909                             <id provider="uniprot">340102</id>
5910                             <code>PYRAR</code>
5911                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
5912                           </taxonomy>
5913                         </clade>
5914                         <clade>
5915                           <taxonomy>
5916                             <id provider="uniprot">410359</id>
5917                             <code>PYRCJ</code>
5918                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
5919                           </taxonomy>
5920                         </clade>
5921                       </clade>
5922                       <clade>
5923                         <taxonomy>
5924                           <id provider="uniprot">13773</id>
5925                           <code>PYRAE</code>
5926                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
5927                           <rank>species</rank>
5928                         </taxonomy>
5929                       </clade>
5930                     </clade>
5931                     <clade>
5932                       <name>a_70</name>
5933                       <clade>
5934                         <taxonomy>
5935                           <id provider="uniprot">384616</id>
5936                           <code>PYRIL</code>
5937                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
5938                         </taxonomy>
5939                       </clade>
5940                       <clade>
5941                         <taxonomy>
5942                           <id provider="uniprot">444157</id>
5943                           <code>THENV</code>
5944                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
5945                           <synonym>Thermoproteus neutrophilus</synonym>
5946                         </taxonomy>
5947                       </clade>
5948                     </clade>
5949                   </clade>
5950                   <clade>
5951                     <taxonomy>
5952                       <id provider="uniprot">397948</id>
5953                       <code>CALMQ</code>
5954                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
5955                     </taxonomy>
5956                   </clade>
5957                 </clade>
5958                 <clade>
5959                   <name>a_80</name>
5960                   <taxonomy>
5961                     <id provider="uniprot">118883</id>
5962                     <scientific_name>Sulfolobaceae</scientific_name>
5963                     <rank>family</rank>
5964                   </taxonomy>
5965                   <clade>
5966                     <name>a_78</name>
5967                     <taxonomy>
5968                       <id provider="uniprot">2284</id>
5969                       <scientific_name>Sulfolobus</scientific_name>
5970                       <rank>genus</rank>
5971                     </taxonomy>
5972                     <clade>
5973                       <name>a_76</name>
5974                       <clade>
5975                         <taxonomy>
5976                           <id provider="uniprot">2285</id>
5977                           <code>SULAC</code>
5978                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
5979                           <rank>species</rank>
5980                         </taxonomy>
5981                       </clade>
5982                       <clade>
5983                         <taxonomy>
5984                           <id provider="uniprot">273063</id>
5985                           <code>SULTO</code>
5986                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
5987                         </taxonomy>
5988                       </clade>
5989                     </clade>
5990                     <clade>
5991                       <taxonomy>
5992                         <id provider="uniprot">2287</id>
5993                         <code>SULSO</code>
5994                         <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>
5995                         <synonym>Sulfolobus solfataricus P2</synonym>
5996                         <rank>strain</rank>
5997                       </taxonomy>
5998                     </clade>
5999                   </clade>
6000                   <clade>
6001                     <taxonomy>
6002                       <id provider="uniprot">399549</id>
6003                       <code>METS5</code>
6004                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
6005                     </taxonomy>
6006                   </clade>
6007                 </clade>
6008               </clade>
6009               <clade>
6010                 <taxonomy>
6011                   <id provider="uniprot">56636</id>
6012                   <code>AERPE</code>
6013                   <scientific_name>Aeropyrum pernix</scientific_name>
6014                   <rank>species</rank>
6015                 </taxonomy>
6016               </clade>
6017             </clade>
6018             <clade>
6019               <name>a_90</name>
6020               <clade>
6021                 <name>a_88</name>
6022                 <clade>
6023                   <name>a_86</name>
6024                   <clade>
6025                     <taxonomy>
6026                       <id provider="uniprot">399550</id>
6027                       <code>STAMF</code>
6028                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
6029                     </taxonomy>
6030                   </clade>
6031                   <clade>
6032                     <taxonomy>
6033                       <id provider="uniprot">368408</id>
6034                       <code>THEPD</code>
6035                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
6036                     </taxonomy>
6037                   </clade>
6038                 </clade>
6039                 <clade>
6040                   <taxonomy>
6041                     <id provider="uniprot">415426</id>
6042                     <code>HYPBU</code>
6043                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
6044                   </taxonomy>
6045                 </clade>
6046               </clade>
6047               <clade>
6048                 <taxonomy>
6049                   <id provider="uniprot">453591</id>
6050                   <code>IGNH4</code>
6051                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
6052                 </taxonomy>
6053               </clade>
6054             </clade>
6055           </clade>
6056           <clade>
6057             <taxonomy>
6058               <id provider="uniprot">374847</id>
6059               <code>KORCO</code>
6060               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
6061             </taxonomy>
6062           </clade>
6063         </clade>
6064       </clade>
6065     </clade>
6066     <clade>
6067       <taxonomy>
6068         <id provider="uniprot">2</id>
6069         <scientific_name>Bacteria</scientific_name>
6070         <rank>superkingdom</rank>
6071       </taxonomy>
6072       <clade>
6073         <name>b_278</name>
6074         <clade>
6075           <name>b_268</name>
6076           <clade>
6077             <name>b_226</name>
6078             <clade>
6079               <name>b_200</name>
6080               <clade>
6081                 <name>b_194</name>
6082                 <clade>
6083                   <name>b_104</name>
6084                   <clade>
6085                     <name>b_80</name>
6086                     <clade>
6087                       <taxonomy>
6088                         <id provider="uniprot">1224</id>
6089                         <scientific_name>Proteobacteria</scientific_name>
6090                         <rank>phylum</rank>
6091                       </taxonomy>
6092                       <clade>
6093                         <name>b_52</name>
6094                         <clade>
6095                           <name>b_44</name>
6096                           <clade>
6097                             <name>b_30</name>
6098                             <clade>
6099                               <name>b_24</name>
6100                               <taxonomy>
6101                                 <id provider="uniprot">1236</id>
6102                                 <scientific_name>Gammaproteobacteria</scientific_name>
6103                                 <rank>class</rank>
6104                               </taxonomy>
6105                               <clade>
6106                                 <name>b_16</name>
6107                                 <clade>
6108                                   <taxonomy>
6109                                     <id provider="uniprot">543</id>
6110                                     <scientific_name>Enterobacteriaceae</scientific_name>
6111                                     <rank>family</rank>
6112                                   </taxonomy>
6113                                   <clade>
6114                                     <name>b_8</name>
6115                                     <clade>
6116                                       <name>b_6</name>
6117                                       <clade>
6118                                         <name>b_4</name>
6119                                         <clade>
6120                                           <taxonomy>
6121                                             <id provider="uniprot">561</id>
6122                                             <scientific_name>Escherichia</scientific_name>
6123                                             <rank>genus</rank>
6124                                           </taxonomy>
6125                                           <clade>
6126                                             <taxonomy>
6127                                               <id provider="uniprot">83333</id>
6128                                               <code>ECOLI</code>
6129                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
6130                                             </taxonomy>
6131                                           </clade>
6132                                           <clade>
6133                                             <taxonomy>
6134                                               <id provider="uniprot">83334</id>
6135                                               <code>ECO57</code>
6136                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
6137                                             </taxonomy>
6138                                           </clade>
6139                                         </clade>
6140                                         <clade>
6141                                           <taxonomy>
6142                                             <id provider="uniprot">623</id>
6143                                             <code>SHIFL</code>
6144                                             <scientific_name>Shigella flexneri</scientific_name>
6145                                             <rank>species</rank>
6146                                           </taxonomy>
6147                                         </clade>
6148                                       </clade>
6149                                       <clade>
6150                                         <taxonomy>
6151                                           <id provider="uniprot">90371</id>
6152                                           <code>SALTY</code>
6153                                           <scientific_name>Salmonella typhimurium</scientific_name>
6154                                         </taxonomy>
6155                                       </clade>
6156                                     </clade>
6157                                     <clade>
6158                                       <taxonomy>
6159                                         <id provider="uniprot">632</id>
6160                                         <code>YERPE</code>
6161                                         <scientific_name>Yersinia pestis</scientific_name>
6162                                         <rank>species</rank>
6163                                       </taxonomy>
6164                                     </clade>
6165                                   </clade>
6166                                   <clade>
6167                                     <taxonomy>
6168                                       <id provider="uniprot">29488</id>
6169                                       <code>PHOLU</code>
6170                                       <scientific_name>Photorhabdus luminescens</scientific_name>
6171                                       <synonym>Xenorhabdus luminescens</synonym>
6172                                       <rank>species</rank>
6173                                     </taxonomy>
6174                                   </clade>
6175                                 </clade>
6176                                 <clade>
6177                                   <name>b_15</name>
6178                                   <clade>
6179                                     <name>b_13</name>
6180                                     <taxonomy>
6181                                       <id provider="uniprot">641</id>
6182                                       <scientific_name>Vibrionaceae</scientific_name>
6183                                       <rank>family</rank>
6184                                     </taxonomy>
6185                                     <clade>
6186                                       <taxonomy>
6187                                         <id provider="uniprot">74109</id>
6188                                         <code>PHOPR</code>
6189                                         <scientific_name>Photobacterium profundum</scientific_name>
6190                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
6191                                         <rank>species</rank>
6192                                       </taxonomy>
6193                                     </clade>
6194                                     <clade>
6195                                       <taxonomy>
6196                                         <id provider="uniprot">666</id>
6197                                         <code>VIBCH</code>
6198                                         <scientific_name>Vibrio cholerae</scientific_name>
6199                                         <rank>species</rank>
6200                                       </taxonomy>
6201                                     </clade>
6202                                   </clade>
6203                                   <clade>
6204                                     <taxonomy>
6205                                       <id provider="uniprot">318161</id>
6206                                       <code>SHEDO</code>
6207                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
6208                                     </taxonomy>
6209                                   </clade>
6210                                 </clade>
6211                               </clade>
6212                               <clade>
6213                                 <name>b_23</name>
6214                                 <clade>
6215                                   <name>b_21</name>
6216                                   <taxonomy>
6217                                     <id provider="uniprot">286</id>
6218                                     <scientific_name>Pseudomonas</scientific_name>
6219                                     <rank>genus</rank>
6220                                   </taxonomy>
6221                                   <clade>
6222                                     <name>b_19</name>
6223                                     <clade>
6224                                       <taxonomy>
6225                                         <id provider="uniprot">220664</id>
6226                                         <code>PSEF5</code>
6227                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
6228                                       </taxonomy>
6229                                     </clade>
6230                                     <clade>
6231                                       <taxonomy>
6232                                         <id provider="uniprot">205922</id>
6233                                         <code>PSEPF</code>
6234                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
6235                                       </taxonomy>
6236                                     </clade>
6237                                   </clade>
6238                                   <clade>
6239                                     <taxonomy>
6240                                       <id provider="uniprot">287</id>
6241                                       <code>PSEAE</code>
6242                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
6243                                       <rank>species</rank>
6244                                     </taxonomy>
6245                                   </clade>
6246                                 </clade>
6247                                 <clade>
6248                                   <taxonomy>
6249                                     <id provider="uniprot">290398</id>
6250                                     <code>CHRSD</code>
6251                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
6252                                   </taxonomy>
6253                                 </clade>
6254                               </clade>
6255                             </clade>
6256                             <clade>
6257                               <name>b_29</name>
6258                               <taxonomy>
6259                                 <id provider="uniprot">28216</id>
6260                                 <scientific_name>Betaproteobacteria</scientific_name>
6261                                 <rank>class</rank>
6262                               </taxonomy>
6263                               <clade>
6264                                 <taxonomy>
6265                                   <id provider="uniprot">159087</id>
6266                                   <code>DECAR</code>
6267                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
6268                                 </taxonomy>
6269                               </clade>
6270                               <clade>
6271                                 <taxonomy>
6272                                   <id provider="uniprot">266264</id>
6273                                   <code>RALME</code>
6274                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
6275                                 </taxonomy>
6276                               </clade>
6277                             </clade>
6278                           </clade>
6279                           <clade>
6280                             <name>b_43</name>
6281                             <clade>
6282                               <name>b_41</name>
6283                               <clade>
6284                                 <name>b_35</name>
6285                                 <taxonomy>
6286                                   <id provider="uniprot">28216</id>
6287                                   <scientific_name>Betaproteobacteria</scientific_name>
6288                                   <rank>class</rank>
6289                                 </taxonomy>
6290                                 <clade>
6291                                   <name>b_33</name>
6292                                   <taxonomy>
6293                                     <id provider="uniprot">206379</id>
6294                                     <scientific_name>Nitrosomonadaceae</scientific_name>
6295                                     <rank>family</rank>
6296                                   </taxonomy>
6297                                   <clade>
6298                                     <taxonomy>
6299                                       <id provider="uniprot">915</id>
6300                                       <code>NITEU</code>
6301                                       <scientific_name>Nitrosomonas europaea</scientific_name>
6302                                       <rank>species</rank>
6303                                     </taxonomy>
6304                                   </clade>
6305                                   <clade>
6306                                     <taxonomy>
6307                                       <id provider="uniprot">323848</id>
6308                                       <code>NITMU</code>
6309                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
6310                                     </taxonomy>
6311                                   </clade>
6312                                 </clade>
6313                                 <clade>
6314                                   <taxonomy>
6315                                     <id provider="uniprot">36861</id>
6316                                     <code>THIDE</code>
6317                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
6318                                     <rank>species</rank>
6319                                   </taxonomy>
6320                                 </clade>
6321                               </clade>
6322                               <clade>
6323                                 <name>b_40</name>
6324                                 <taxonomy>
6325                                   <id provider="uniprot">135613</id>
6326                                   <scientific_name>Chromatiales</scientific_name>
6327                                   <rank>order</rank>
6328                                 </taxonomy>
6329                                 <clade>
6330                                   <name>b_38</name>
6331                                   <taxonomy>
6332                                     <id provider="uniprot">72276</id>
6333                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
6334                                     <common_name>purple sulfur bacteria</common_name>
6335                                     <rank>family</rank>
6336                                   </taxonomy>
6337                                   <clade>
6338                                     <taxonomy>
6339                                       <id provider="uniprot">187272</id>
6340                                       <code>ALHEH</code>
6341                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
6342                                     </taxonomy>
6343                                   </clade>
6344                                   <clade>
6345                                     <taxonomy>
6346                                       <id provider="uniprot">349124</id>
6347                                       <code>HALHL</code>
6348                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
6349                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
6350                                     </taxonomy>
6351                                   </clade>
6352                                 </clade>
6353                                 <clade>
6354                                   <taxonomy>
6355                                     <id provider="uniprot">323261</id>
6356                                     <code>NITOC</code>
6357                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
6358                                   </taxonomy>
6359                                 </clade>
6360                               </clade>
6361                             </clade>
6362                             <clade>
6363                               <taxonomy>
6364                                 <id provider="uniprot">317025</id>
6365                                 <code>THICR</code>
6366                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
6367                               </taxonomy>
6368                             </clade>
6369                           </clade>
6370                         </clade>
6371                         <clade>
6372                           <name>b_51</name>
6373                           <taxonomy>
6374                             <id provider="uniprot">1236</id>
6375                             <scientific_name>Gammaproteobacteria</scientific_name>
6376                             <rank>class</rank>
6377                           </taxonomy>
6378                           <clade>
6379                             <name>b_47</name>
6380                             <clade>
6381                               <taxonomy>
6382                                 <id provider="uniprot">135577</id>
6383                                 <code>IDILO</code>
6384                                 <scientific_name>Idiomarina loihiensis</scientific_name>
6385                                 <rank>species</rank>
6386                               </taxonomy>
6387                             </clade>
6388                             <clade>
6389                               <taxonomy>
6390                                 <id provider="uniprot">446</id>
6391                                 <code>LEGPN</code>
6392                                 <scientific_name>Legionella pneumophila</scientific_name>
6393                                 <rank>species</rank>
6394                               </taxonomy>
6395                             </clade>
6396                           </clade>
6397                           <clade>
6398                             <name>b_50</name>
6399                             <taxonomy>
6400                               <id provider="uniprot">32033</id>
6401                               <scientific_name>Xanthomonadaceae</scientific_name>
6402                               <rank>family</rank>
6403                             </taxonomy>
6404                             <clade>
6405                               <taxonomy>
6406                                 <id provider="uniprot">190486</id>
6407                                 <code>XANAC</code>
6408                                 <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>
6409                                 <synonym>Xanthomonas citri pv. citri str. 306</synonym>
6410                               </taxonomy>
6411                             </clade>
6412                             <clade>
6413                               <taxonomy>
6414                                 <id provider="uniprot">183190</id>
6415                                 <code>XYLFT</code>
6416                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
6417                               </taxonomy>
6418                             </clade>
6419                           </clade>
6420                         </clade>
6421                       </clade>
6422                       <clade>
6423                         <name>b_71</name>
6424                         <taxonomy>
6425                           <id provider="uniprot">28211</id>
6426                           <scientific_name>Alphaproteobacteria</scientific_name>
6427                           <rank>class</rank>
6428                         </taxonomy>
6429                         <clade>
6430                           <name>b_67</name>
6431                           <clade>
6432                             <name>b_65</name>
6433                             <clade>
6434                               <name>b_61</name>
6435                               <taxonomy>
6436                                 <id provider="uniprot">356</id>
6437                                 <scientific_name>Rhizobiales</scientific_name>
6438                                 <rank>order</rank>
6439                               </taxonomy>
6440                               <clade>
6441                                 <name>b_57</name>
6442                                 <taxonomy>
6443                                   <id provider="uniprot">227290</id>
6444                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
6445                                 </taxonomy>
6446                                 <clade>
6447                                   <taxonomy>
6448                                     <id provider="uniprot">176299</id>
6449                                     <code>AGRT5</code>
6450                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
6451                                   </taxonomy>
6452                                 </clade>
6453                                 <clade>
6454                                   <taxonomy>
6455                                     <id provider="uniprot">347834</id>
6456                                     <code>RHIEC</code>
6457                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
6458                                   </taxonomy>
6459                                 </clade>
6460                               </clade>
6461                               <clade>
6462                                 <name>b_60</name>
6463                                 <taxonomy>
6464                                   <id provider="uniprot">41294</id>
6465                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
6466                                   <rank>family</rank>
6467                                 </taxonomy>
6468                                 <clade>
6469                                   <taxonomy>
6470                                     <id provider="uniprot">375</id>
6471                                     <code>BRAJA</code>
6472                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
6473                                     <rank>species</rank>
6474                                   </taxonomy>
6475                                 </clade>
6476                                 <clade>
6477                                   <taxonomy>
6478                                     <id provider="uniprot">395960</id>
6479                                     <code>RHOPT</code>
6480                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
6481                                   </taxonomy>
6482                                 </clade>
6483                               </clade>
6484                             </clade>
6485                             <clade>
6486                               <name>b_64</name>
6487                               <taxonomy>
6488                                 <id provider="uniprot">31989</id>
6489                                 <scientific_name>Rhodobacteraceae</scientific_name>
6490                                 <rank>family</rank>
6491                               </taxonomy>
6492                               <clade>
6493                                 <taxonomy>
6494                                   <id provider="uniprot">349101</id>
6495                                   <code>RHOS1</code>
6496                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
6497                                 </taxonomy>
6498                               </clade>
6499                               <clade>
6500                                 <taxonomy>
6501                                   <id provider="uniprot">375451</id>
6502                                   <code>ROSDO</code>
6503                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
6504                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
6505                                   <synonym>Roseobacter denitrificans</synonym>
6506                                 </taxonomy>
6507                               </clade>
6508                             </clade>
6509                           </clade>
6510                           <clade>
6511                             <taxonomy>
6512                               <id provider="uniprot">155892</id>
6513                               <code>CAUCR</code>
6514                               <scientific_name>Caulobacter crescentus</scientific_name>
6515                               <synonym>Caulobacter vibrioides</synonym>
6516                               <rank>species</rank>
6517                             </taxonomy>
6518                           </clade>
6519                         </clade>
6520                         <clade>
6521                           <name>b_70</name>
6522                           <taxonomy>
6523                             <id provider="uniprot">204441</id>
6524                             <scientific_name>Rhodospirillales</scientific_name>
6525                             <rank>order</rank>
6526                           </taxonomy>
6527                           <clade>
6528                             <taxonomy>
6529                               <id provider="uniprot">524</id>
6530                               <code>ACICY</code>
6531                               <scientific_name>Acidiphilium cryptum</scientific_name>
6532                               <rank>species</rank>
6533                             </taxonomy>
6534                           </clade>
6535                           <clade>
6536                             <taxonomy>
6537                               <id provider="uniprot">1085</id>
6538                               <code>RHORU</code>
6539                               <scientific_name>Rhodospirillum rubrum</scientific_name>
6540                               <rank>species</rank>
6541                             </taxonomy>
6542                           </clade>
6543                         </clade>
6544                       </clade>
6545                     </clade>
6546                     <clade>
6547                       <name>b_79</name>
6548                       <clade>
6549                         <name>b_77</name>
6550                         <taxonomy>
6551                           <id provider="uniprot">1224</id>
6552                           <scientific_name>Proteobacteria</scientific_name>
6553                           <rank>phylum</rank>
6554                         </taxonomy>
6555                         <clade>
6556                           <name>b_75</name>
6557                           <taxonomy>
6558                             <id provider="uniprot">712</id>
6559                             <scientific_name>Pasteurellaceae</scientific_name>
6560                             <rank>family</rank>
6561                           </taxonomy>
6562                           <clade>
6563                             <taxonomy>
6564                               <id provider="uniprot">727</id>
6565                               <code>HAEIN</code>
6566                               <scientific_name>Haemophilus influenzae</scientific_name>
6567                               <rank>species</rank>
6568                             </taxonomy>
6569                           </clade>
6570                           <clade>
6571                             <taxonomy>
6572                               <id provider="uniprot">747</id>
6573                               <code>PASMU</code>
6574                               <scientific_name>Pasteurella multocida</scientific_name>
6575                               <rank>species</rank>
6576                             </taxonomy>
6577                           </clade>
6578                         </clade>
6579                         <clade>
6580                           <taxonomy>
6581                             <id provider="uniprot">487</id>
6582                             <code>NEIME</code>
6583                             <scientific_name>Neisseria meningitidis</scientific_name>
6584                             <rank>species</rank>
6585                           </taxonomy>
6586                         </clade>
6587                       </clade>
6588                       <clade>
6589                         <taxonomy>
6590                           <id provider="uniprot">905</id>
6591                           <code>ACIFE</code>
6592                           <scientific_name>Acidaminococcus fermentans</scientific_name>
6593                           <rank>species</rank>
6594                         </taxonomy>
6595                       </clade>
6596                     </clade>
6597                   </clade>
6598                   <clade>
6599                     <name>b_103</name>
6600                     <clade>
6601                       <name>b_91</name>
6602                       <taxonomy>
6603                         <id provider="uniprot">28221</id>
6604                         <scientific_name>Deltaproteobacteria</scientific_name>
6605                         <rank>class</rank>
6606                       </taxonomy>
6607                       <clade>
6608                         <name>b_87</name>
6609                         <clade>
6610                           <name>b_83</name>
6611                           <clade>
6612                             <taxonomy>
6613                               <id provider="uniprot">84980</id>
6614                               <code>DESPS</code>
6615                               <scientific_name>Desulfotalea psychrophila</scientific_name>
6616                               <rank>species</rank>
6617                             </taxonomy>
6618                           </clade>
6619                           <clade>
6620                             <taxonomy>
6621                               <id provider="uniprot">876</id>
6622                               <code>DESDE</code>
6623                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
6624                               <rank>species</rank>
6625                             </taxonomy>
6626                           </clade>
6627                         </clade>
6628                         <clade>
6629                           <taxonomy>
6630                             <id provider="uniprot">56780</id>
6631                             <code>SYNAS</code>
6632                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
6633                           </taxonomy>
6634                         </clade>
6635                       </clade>
6636                       <clade>
6637                         <name>b_90</name>
6638                         <taxonomy>
6639                           <id provider="uniprot">28231</id>
6640                           <scientific_name>Geobacter</scientific_name>
6641                           <rank>genus</rank>
6642                         </taxonomy>
6643                         <clade>
6644                           <taxonomy>
6645                             <id provider="uniprot">28232</id>
6646                             <code>GEOME</code>
6647                             <scientific_name>Geobacter metallireducens</scientific_name>
6648                             <rank>species</rank>
6649                           </taxonomy>
6650                         </clade>
6651                         <clade>
6652                           <taxonomy>
6653                             <id provider="uniprot">35554</id>
6654                             <code>GEOSL</code>
6655                             <scientific_name>Geobacter sulfurreducens</scientific_name>
6656                             <rank>species</rank>
6657                           </taxonomy>
6658                         </clade>
6659                       </clade>
6660                     </clade>
6661                     <clade>
6662                       <name>b_102</name>
6663                       <clade>
6664                         <name>b_98</name>
6665                         <clade>
6666                           <name>b_94</name>
6667                           <taxonomy>
6668                             <id provider="uniprot">31</id>
6669                             <scientific_name>Myxococcaceae</scientific_name>
6670                             <rank>family</rank>
6671                           </taxonomy>
6672                           <clade>
6673                             <taxonomy>
6674                               <id provider="uniprot">290397</id>
6675                               <code>ANADE</code>
6676                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
6677                             </taxonomy>
6678                           </clade>
6679                           <clade>
6680                             <taxonomy>
6681                               <id provider="uniprot">34</id>
6682                               <code>MYXXA</code>
6683                               <scientific_name>Myxococcus xanthus</scientific_name>
6684                               <rank>species</rank>
6685                             </taxonomy>
6686                           </clade>
6687                         </clade>
6688                         <clade>
6689                           <name>b_97</name>
6690                           <taxonomy>
6691                             <id provider="uniprot">57723</id>
6692                             <scientific_name>Acidobacteria</scientific_name>
6693                             <rank>phylum</rank>
6694                           </taxonomy>
6695                           <clade>
6696                             <taxonomy>
6697                               <id provider="uniprot">204669</id>
6698                               <code>KORVE</code>
6699                               <scientific_name>Koribacter versatilis (strain Ellin345)</scientific_name>
6700                               <synonym>Acidobacteria bacterium Ellin345</synonym>
6701                               <synonym>Candidatus Koribacter versatilis Ellin345</synonym>
6702                             </taxonomy>
6703                           </clade>
6704                           <clade>
6705                             <taxonomy>
6706                               <id provider="uniprot">332163</id>
6707                               <code>SOLUS</code>
6708                               <scientific_name>Solibacter usitatus</scientific_name>
6709                               <rank>species</rank>
6710                             </taxonomy>
6711                           </clade>
6712                         </clade>
6713                       </clade>
6714                       <clade>
6715                         <taxonomy>
6716                           <id provider="uniprot">265606</id>
6717                           <code>RHOBA</code>
6718                           <scientific_name>Rhodopirellula baltica</scientific_name>
6719                           <rank>species</rank>
6720                         </taxonomy>
6721                       </clade>
6722                     </clade>
6723                   </clade>
6724                 </clade>
6725                 <clade>
6726                   <name>b_193</name>
6727                   <clade>
6728                     <name>b_163</name>
6729                     <clade>
6730                       <name>b_133</name>
6731                       <clade>
6732                         <name>Chloroflexi &amp; Actinobacteria</name>
6733                         <clade>
6734                           <taxonomy>
6735                             <id provider="uniprot">201174</id>
6736                             <scientific_name>Actinobacteria</scientific_name>
6737                             <rank>phylum</rank>
6738                           </taxonomy>
6739                           <clade>
6740                             <taxonomy>
6741                               <id provider="uniprot">2037</id>
6742                               <scientific_name>Actinomycetales</scientific_name>
6743                               <rank>order</rank>
6744                             </taxonomy>
6745                             <clade>
6746                               <name>b_115</name>
6747                               <clade>
6748                                 <taxonomy>
6749                                   <id provider="uniprot">266940</id>
6750                                   <code>KINRD</code>
6751                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
6752                                 </taxonomy>
6753                               </clade>
6754                               <clade>
6755                                 <taxonomy>
6756                                   <id provider="uniprot">378753</id>
6757                                   <code>KOCRD</code>
6758                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
6759                                 </taxonomy>
6760                               </clade>
6761                               <clade>
6762                                 <taxonomy>
6763                                   <id provider="uniprot">1032480</id>
6764                                   <code>MICPN</code>
6765                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
6766                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
6767                                   <rank>strain</rank>
6768                                 </taxonomy>
6769                               </clade>
6770                               <clade>
6771                                 <taxonomy>
6772                                   <id provider="uniprot">1902</id>
6773                                   <code>STRCO</code>
6774                                   <scientific_name>Streptomyces coelicolor</scientific_name>
6775                                   <rank>species</rank>
6776                                 </taxonomy>
6777                               </clade>
6778                               <clade>
6779                                 <taxonomy>
6780                                   <id provider="uniprot">269800</id>
6781                                   <code>THEFY</code>
6782                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
6783                                 </taxonomy>
6784                               </clade>
6785                             </clade>
6786                             <clade>
6787                               <taxonomy>
6788                                 <id provider="uniprot">85007</id>
6789                                 <scientific_name>Corynebacterineae</scientific_name>
6790                                 <rank>suborder</rank>
6791                               </taxonomy>
6792                               <clade>
6793                                 <taxonomy>
6794                                   <id provider="uniprot">1763</id>
6795                                   <scientific_name>Mycobacterium</scientific_name>
6796                                   <rank>genus</rank>
6797                                 </taxonomy>
6798                                 <clade>
6799                                   <taxonomy>
6800                                     <id provider="uniprot">1769</id>
6801                                     <code>MYCLE</code>
6802                                     <scientific_name>Mycobacterium leprae</scientific_name>
6803                                     <rank>species</rank>
6804                                   </taxonomy>
6805                                 </clade>
6806                                 <clade>
6807                                   <taxonomy>
6808                                     <id provider="uniprot">1773</id>
6809                                     <code>MYCTU</code>
6810                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
6811                                     <rank>species</rank>
6812                                   </taxonomy>
6813                                 </clade>
6814                               </clade>
6815                               <clade>
6816                                 <taxonomy>
6817                                   <id provider="uniprot">306537</id>
6818                                   <code>CORJK</code>
6819                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
6820                                 </taxonomy>
6821                               </clade>
6822                               <clade>
6823                                 <taxonomy>
6824                                   <id provider="uniprot">632772</id>
6825                                   <code>RHOOB</code>
6826                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
6827                                   <rank>strain</rank>
6828                                 </taxonomy>
6829                               </clade>
6830                             </clade>
6831                           </clade>
6832                           <clade>
6833                             <taxonomy>
6834                               <id provider="uniprot">266117</id>
6835                               <code>RUBXD</code>
6836                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
6837                             </taxonomy>
6838                           </clade>
6839                         </clade>
6840                         <clade>
6841                           <taxonomy>
6842                             <id provider="uniprot">200795</id>
6843                             <scientific_name>Chloroflexi</scientific_name>
6844                             <common_name>GNS bacteria</common_name>
6845                             <synonym>Thermomicrobia</synonym>
6846                             <rank>phylum</rank>
6847                           </taxonomy>
6848                           <clade>
6849                             <taxonomy>
6850                               <id provider="uniprot">32061</id>
6851                               <scientific_name>Chloroflexi (class)</scientific_name>
6852                               <synonym>Chloroflecales</synonym>
6853                               <synonym>Chloroflexus/Deinococcus group</synonym>
6854                               <rank>class</rank>
6855                             </taxonomy>
6856                             <clade>
6857                               <taxonomy>
6858                                 <id provider="uniprot">1106</id>
6859                                 <scientific_name>Chloroflexaceae</scientific_name>
6860                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
6861                                 <rank>family</rank>
6862                               </taxonomy>
6863                               <clade>
6864                                 <taxonomy>
6865                                   <id provider="uniprot">1108</id>
6866                                   <code>CHLAU</code>
6867                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
6868                                   <rank>species</rank>
6869                                 </taxonomy>
6870                               </clade>
6871                               <clade>
6872                                 <taxonomy>
6873                                   <id provider="uniprot">383372</id>
6874                                   <code>ROSCS</code>
6875                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
6876                                   <rank>species</rank>
6877                                 </taxonomy>
6878                               </clade>
6879                             </clade>
6880                             <clade>
6881                               <taxonomy>
6882                                 <id provider="uniprot">65</id>
6883                                 <code>HERAU</code>
6884                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
6885                                 <synonym>Herpetosiphon giganteus</synonym>
6886                                 <rank>species</rank>
6887                               </taxonomy>
6888                             </clade>
6889                           </clade>
6890                           <clade>
6891                             <taxonomy>
6892                               <id provider="uniprot">479434</id>
6893                               <code>SPHTD</code>
6894                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
6895                               <rank>strain</rank>
6896                             </taxonomy>
6897                           </clade>
6898                         </clade>
6899                       </clade>
6900                       <clade>
6901                         <name>b_132</name>
6902                         <taxonomy>
6903                           <id provider="uniprot">188787</id>
6904                           <scientific_name>Deinococci</scientific_name>
6905                           <rank>class</rank>
6906                         </taxonomy>
6907                         <clade>
6908                           <taxonomy>
6909                             <id provider="uniprot">1298</id>
6910                             <scientific_name>Deinococcus</scientific_name>
6911                             <rank>genus</rank>
6912                           </taxonomy>
6913                           <clade>
6914                             <taxonomy>
6915                               <id provider="uniprot">319795</id>
6916                               <code>DEIGD</code>
6917                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
6918                             </taxonomy>
6919                           </clade>
6920                           <clade>
6921                             <taxonomy>
6922                               <id provider="uniprot">1299</id>
6923                               <code>DEIRA</code>
6924                               <scientific_name>Deinococcus radiodurans</scientific_name>
6925                               <rank>species</rank>
6926                             </taxonomy>
6927                           </clade>
6928                         </clade>
6929                         <clade>
6930                           <taxonomy>
6931                             <id provider="uniprot">300852</id>
6932                             <code>THET8</code>
6933                             <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>
6934                             <rank>strain</rank>
6935                           </taxonomy>
6936                         </clade>
6937                       </clade>
6938                     </clade>
6939                     <clade>
6940                       <name>b_162</name>
6941                       <taxonomy>
6942                         <id provider="uniprot">1117</id>
6943                         <scientific_name>Cyanobacteria</scientific_name>
6944                         <rank>phylum</rank>
6945                       </taxonomy>
6946                       <clade>
6947                         <name>b_154</name>
6948                         <clade>
6949                           <name>b_152</name>
6950                           <clade>
6951                             <name>b_146</name>
6952                             <clade>
6953                               <name>b_144</name>
6954                               <clade>
6955                                 <name>b_142</name>
6956                                 <clade>
6957                                   <name>b_138</name>
6958                                   <taxonomy>
6959                                     <id provider="uniprot">1162</id>
6960                                     <scientific_name>Nostocaceae</scientific_name>
6961                                     <rank>family</rank>
6962                                   </taxonomy>
6963                                   <clade>
6964                                     <name>b_136</name>
6965                                     <clade>
6966                                       <taxonomy>
6967                                         <id provider="uniprot">240292</id>
6968                                         <code>ANAVT</code>
6969                                         <scientific_name>Anabaena variabilis (strain ATCC 29413 / PCC 7937)</scientific_name>
6970                                         <synonym>Anabaena flos-aquae (strain IUCC 1444)</synonym>
6971                                         <rank>strain</rank>
6972                                       </taxonomy>
6973                                     </clade>
6974                                     <clade>
6975                                       <taxonomy>
6976                                         <id provider="uniprot">28072</id>
6977                                         <code>NOSS7</code>
6978                                         <scientific_name>Nostoc sp. (strain ATCC 29411 / PCC 7524)</scientific_name>
6979                                         <rank>species</rank>
6980                                       </taxonomy>
6981                                     </clade>
6982                                   </clade>
6983                                   <clade>
6984                                     <taxonomy>
6985                                       <id provider="uniprot">63737</id>
6986                                       <code>NOSP7</code>
6987                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
6988                                       <rank>strain</rank>
6989                                     </taxonomy>
6990                                   </clade>
6991                                 </clade>
6992                                 <clade>
6993                                   <taxonomy>
6994                                     <id provider="uniprot">329726</id>
6995                                     <code>ACAM1</code>
6996                                     <scientific_name>Acaryochloris marina (strain MBIC 11017</scientific_name>
6997                                     <rank>strain</rank>
6998                                   </taxonomy>
6999                                 </clade>
7000                               </clade>
7001                               <clade>
7002                                 <taxonomy>
7003                                   <id provider="uniprot">449447</id>
7004                                   <code>MICAN</code>
7005                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
7006                                 </taxonomy>
7007                               </clade>
7008                             </clade>
7009                             <clade>
7010                               <taxonomy>
7011                                 <id provider="uniprot">1206</id>
7012                                 <code>TRIER</code>
7013                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
7014                                 <rank>species</rank>
7015                               </taxonomy>
7016                             </clade>
7017                           </clade>
7018                           <clade>
7019                             <taxonomy>
7020                               <id provider="uniprot">1118</id>
7021                               <scientific_name>Chroococcales</scientific_name>
7022                               <rank>order</rank>
7023                             </taxonomy>
7024                             <clade>
7025                               <taxonomy>
7026                                 <id provider="uniprot">32046</id>
7027                                 <code>SYNEL</code>
7028                                 <scientific_name>Synechococcus elongatus</scientific_name>
7029                                 <rank>species</rank>
7030                               </taxonomy>
7031                             </clade>
7032                             <clade>
7033                               <taxonomy>
7034                                 <id provider="uniprot">1111708</id>
7035                                 <code>SYNY3</code>
7036                                 <scientific_name>Synechocystis sp. (strain PCC 6803 / Kazusa)</scientific_name>
7037                               </taxonomy>
7038                             </clade>
7039                           </clade>
7040                         </clade>
7041                         <clade>
7042                           <taxonomy>
7043                             <id provider="uniprot">33072</id>
7044                             <code>GLOVI</code>
7045                             <scientific_name>Gloeobacter violaceus</scientific_name>
7046                             <rank>species</rank>
7047                           </taxonomy>
7048                         </clade>
7049                       </clade>
7050                       <clade>
7051                         <name>b_161</name>
7052                         <clade>
7053                           <name>b_159</name>
7054                           <taxonomy>
7055                             <id provider="uniprot">1218</id>
7056                             <scientific_name>Prochlorococcus</scientific_name>
7057                             <rank>genus</rank>
7058                           </taxonomy>
7059                           <clade>
7060                             <name>b_157</name>
7061                             <clade>
7062                               <taxonomy>
7063                                 <id provider="uniprot">1219</id>
7064                                 <code>PROMA</code>
7065                                 <scientific_name>Prochlorococcus marinus</scientific_name>
7066                                 <rank>species</rank>
7067                               </taxonomy>
7068                             </clade>
7069                             <clade>
7070                               <taxonomy>
7071                                 <id provider="uniprot">59919</id>
7072                                 <code>PROMP</code>
7073                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
7074                               </taxonomy>
7075                             </clade>
7076                           </clade>
7077                           <clade>
7078                             <taxonomy>
7079                               <id provider="uniprot">74547</id>
7080                               <code>PROMM</code>
7081                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
7082                             </taxonomy>
7083                           </clade>
7084                         </clade>
7085                         <clade>
7086                           <taxonomy>
7087                             <id provider="uniprot">64471</id>
7088                             <code>SYNS3</code>
7089                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
7090                             <rank>species</rank>
7091                           </taxonomy>
7092                         </clade>
7093                       </clade>
7094                     </clade>
7095                   </clade>
7096                   <clade>
7097                     <name>b_192</name>
7098                     <clade>
7099                       <name>b_190</name>
7100                       <clade>
7101                         <name>b_178</name>
7102                         <clade>
7103                           <name>b_176</name>
7104                           <taxonomy>
7105                             <id provider="uniprot">191412</id>
7106                             <scientific_name>Chlorobiaceae</scientific_name>
7107                             <rank>family</rank>
7108                           </taxonomy>
7109                           <clade>
7110                             <name>b_170</name>
7111                             <clade>
7112                               <name>b_166</name>
7113                               <clade>
7114                                 <taxonomy>
7115                                   <id provider="uniprot">331678</id>
7116                                   <code>CHLPB</code>
7117                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
7118                                 </taxonomy>
7119                               </clade>
7120                               <clade>
7121                                 <taxonomy>
7122                                   <id provider="uniprot">1102</id>
7123                                   <code>PROAE</code>
7124                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
7125                                   <rank>species</rank>
7126                                 </taxonomy>
7127                               </clade>
7128                             </clade>
7129                             <clade>
7130                               <name>b_169</name>
7131                               <taxonomy>
7132                                 <id provider="uniprot">274493</id>
7133                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
7134                               </taxonomy>
7135                               <clade>
7136                                 <taxonomy>
7137                                   <id provider="uniprot">1100</id>
7138                                   <code>PELLU</code>
7139                                   <scientific_name>Pelodictyon luteolum</scientific_name>
7140                                   <rank>species</rank>
7141                                 </taxonomy>
7142                               </clade>
7143                               <clade>
7144                                 <taxonomy>
7145                                   <id provider="uniprot">290318</id>
7146                                   <code>PROVI</code>
7147                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
7148                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
7149                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
7150                                 </taxonomy>
7151                               </clade>
7152                             </clade>
7153                           </clade>
7154                           <clade>
7155                             <name>b_175</name>
7156                             <clade>
7157                               <taxonomy>
7158                                 <id provider="uniprot">256319</id>
7159                                 <scientific_name>Chlorobaculum</scientific_name>
7160                                 <rank>genus</rank>
7161                               </taxonomy>
7162                               <clade>
7163                                 <taxonomy>
7164                                   <id provider="uniprot">517417</id>
7165                                   <code>CHLP8</code>
7166                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
7167                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
7168                                 </taxonomy>
7169                               </clade>
7170                               <clade>
7171                                 <taxonomy>
7172                                   <id provider="uniprot">1097</id>
7173                                   <code>CHLTE</code>
7174                                   <scientific_name>Chlorobium tepidum</scientific_name>
7175                                   <rank>species</rank>
7176                                 </taxonomy>
7177                               </clade>
7178                             </clade>
7179                             <clade>
7180                               <taxonomy>
7181                                 <id provider="uniprot">340177</id>
7182                                 <code>CHLCH</code>
7183                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
7184                               </taxonomy>
7185                             </clade>
7186                           </clade>
7187                         </clade>
7188                         <clade>
7189                           <taxonomy>
7190                             <id provider="uniprot">315277</id>
7191                             <code>CHLTA</code>
7192                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
7193                           </taxonomy>
7194                         </clade>
7195                       </clade>
7196                       <clade>
7197                         <name>b_189</name>
7198                         <taxonomy>
7199                           <id provider="uniprot">976</id>
7200                           <scientific_name>Bacteroidetes</scientific_name>
7201                           <rank>phylum</rank>
7202                         </taxonomy>
7203                         <clade>
7204                           <name>b_183</name>
7205                           <clade>
7206                             <name>b_181</name>
7207                             <taxonomy>
7208                               <id provider="uniprot">49546</id>
7209                               <scientific_name>Flavobacteriaceae</scientific_name>
7210                               <rank>family</rank>
7211                             </taxonomy>
7212                             <clade>
7213                               <taxonomy>
7214                                 <id provider="uniprot">986</id>
7215                                 <code>FLAJO</code>
7216                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
7217                                 <synonym>Cytophaga johnsonae</synonym>
7218                                 <rank>species</rank>
7219                               </taxonomy>
7220                             </clade>
7221                             <clade>
7222                               <taxonomy>
7223                                 <id provider="uniprot">411154</id>
7224                                 <code>GRAFK</code>
7225                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
7226                               </taxonomy>
7227                             </clade>
7228                           </clade>
7229                           <clade>
7230                             <taxonomy>
7231                               <id provider="uniprot">269798</id>
7232                               <code>CYTH3</code>
7233                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
7234                             </taxonomy>
7235                           </clade>
7236                         </clade>
7237                         <clade>
7238                           <name>b_188</name>
7239                           <taxonomy>
7240                             <id provider="uniprot">171549</id>
7241                             <scientific_name>Bacteroidales</scientific_name>
7242                             <rank>order</rank>
7243                           </taxonomy>
7244                           <clade>
7245                             <name>b_186</name>
7246                             <taxonomy>
7247                               <id provider="uniprot">816</id>
7248                               <scientific_name>Bacteroides</scientific_name>
7249                               <rank>genus</rank>
7250                             </taxonomy>
7251                             <clade>
7252                               <taxonomy>
7253                                 <id provider="uniprot">817</id>
7254                                 <code>BACFR</code>
7255                                 <scientific_name>Bacteroides fragilis</scientific_name>
7256                                 <rank>species</rank>
7257                               </taxonomy>
7258                             </clade>
7259                             <clade>
7260                               <taxonomy>
7261                                 <id provider="uniprot">818</id>
7262                                 <code>BACTN</code>
7263                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
7264                                 <rank>species</rank>
7265                               </taxonomy>
7266                             </clade>
7267                           </clade>
7268                           <clade>
7269                             <taxonomy>
7270                               <id provider="uniprot">837</id>
7271                               <code>PORGI</code>
7272                               <scientific_name>Porphyromonas gingivalis</scientific_name>
7273                               <synonym>Bacteroides gingivalis</synonym>
7274                               <rank>species</rank>
7275                             </taxonomy>
7276                           </clade>
7277                         </clade>
7278                       </clade>
7279                     </clade>
7280                     <clade>
7281                       <taxonomy>
7282                         <id provider="uniprot">309807</id>
7283                         <code>SALRD</code>
7284                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
7285                       </taxonomy>
7286                     </clade>
7287                   </clade>
7288                 </clade>
7289               </clade>
7290               <clade>
7291                 <name>b_199</name>
7292                 <clade>
7293                   <name>b_197</name>
7294                   <taxonomy>
7295                     <scientific_name>Verrucomicrobia</scientific_name>
7296                   </taxonomy>
7297                   <clade>
7298                     <taxonomy>
7299                       <id provider="uniprot">349741</id>
7300                       <code>AKKM8</code>
7301                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
7302                     </taxonomy>
7303                   </clade>
7304                   <clade>
7305                     <taxonomy>
7306                       <id provider="uniprot">481448</id>
7307                       <code>METI4</code>
7308                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
7309                       <synonym>Methylokorus infernorum (strain V4)</synonym>
7310                     </taxonomy>
7311                   </clade>
7312                 </clade>
7313                 <clade>
7314                   <taxonomy>
7315                     <id provider="uniprot">44275</id>
7316                     <code>LEPIC</code>
7317                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
7318                   </taxonomy>
7319                 </clade>
7320               </clade>
7321             </clade>
7322             <clade>
7323               <name>b_225</name>
7324               <clade>
7325                 <name>b_219</name>
7326                 <taxonomy>
7327                   <id provider="uniprot">1239</id>
7328                   <scientific_name>Firmicutes</scientific_name>
7329                   <rank>phylum</rank>
7330                 </taxonomy>
7331                 <clade>
7332                   <name>b_213</name>
7333                   <clade>
7334                     <taxonomy>
7335                       <id provider="uniprot">1385</id>
7336                       <scientific_name>Bacillales</scientific_name>
7337                       <rank>order</rank>
7338                     </taxonomy>
7339                     <clade>
7340                       <taxonomy>
7341                         <id provider="uniprot">186817</id>
7342                         <scientific_name>Bacillaceae</scientific_name>
7343                         <rank>family</rank>
7344                       </taxonomy>
7345                       <clade>
7346                         <taxonomy>
7347                           <id provider="uniprot">1386</id>
7348                           <scientific_name>Bacillus</scientific_name>
7349                           <rank>genus</rank>
7350                         </taxonomy>
7351                         <clade>
7352                           <taxonomy>
7353                             <id provider="uniprot">86661</id>
7354                             <scientific_name>Bacillus cereus group</scientific_name>
7355                           </taxonomy>
7356                           <clade>
7357                             <taxonomy>
7358                               <id provider="uniprot">1392</id>
7359                               <code>BACAN</code>
7360                               <scientific_name>Bacillus anthracis</scientific_name>
7361                               <rank>species</rank>
7362                             </taxonomy>
7363                           </clade>
7364                           <clade>
7365                             <taxonomy>
7366                               <id provider="uniprot">572264</id>
7367                               <code>BACC3</code>
7368                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
7369                               <rank>strain</rank>
7370                             </taxonomy>
7371                           </clade>
7372                         </clade>
7373                         <clade>
7374                           <taxonomy>
7375                             <id provider="uniprot">224308</id>
7376                             <code>BACSU</code>
7377                             <scientific_name>Bacillus subtilis (strain 168)</scientific_name>
7378                             <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>
7379                           </taxonomy>
7380                         </clade>
7381                       </clade>
7382                       <clade>
7383                         <name>b_206</name>
7384                         <clade>
7385                           <taxonomy>
7386                             <id provider="uniprot">86665</id>
7387                             <code>BACHD</code>
7388                             <scientific_name>Bacillus halodurans</scientific_name>
7389                             <rank>species</rank>
7390                           </taxonomy>
7391                         </clade>
7392                         <clade>
7393                           <taxonomy>
7394                             <id provider="uniprot">1462</id>
7395                             <code>GEOKA</code>
7396                             <scientific_name>Geobacillus kaustophilus</scientific_name>
7397                             <rank>species</rank>
7398                           </taxonomy>
7399                         </clade>
7400                       </clade>
7401                     </clade>
7402                     <clade>
7403                       <name>b_210</name>
7404                       <clade>
7405                         <taxonomy>
7406                           <id provider="uniprot">1639</id>
7407                           <code>LISMO</code>
7408                           <scientific_name>Listeria monocytogenes</scientific_name>
7409                           <rank>species</rank>
7410                         </taxonomy>
7411                       </clade>
7412                       <clade>
7413                         <taxonomy>
7414                           <id provider="uniprot">1280</id>
7415                           <code>STAAU</code>
7416                           <scientific_name>Staphylococcus aureus</scientific_name>
7417                           <rank>species</rank>
7418                         </taxonomy>
7419                       </clade>
7420                     </clade>
7421                   </clade>
7422                   <clade>
7423                     <taxonomy>
7424                       <id provider="uniprot">195103</id>
7425                       <code>CLOP1</code>
7426                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
7427                     </taxonomy>
7428                   </clade>
7429                 </clade>
7430                 <clade>
7431                   <name>Clostridia</name>
7432                   <taxonomy>
7433                     <id provider="uniprot">186801</id>
7434                     <scientific_name>Clostridia</scientific_name>
7435                     <rank>class</rank>
7436                   </taxonomy>
7437                   <clade>
7438                     <name>b_218</name>
7439                     <clade>
7440                       <name>b_216</name>
7441                       <taxonomy>
7442                         <id provider="uniprot">186814</id>
7443                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
7444                         <rank>family</rank>
7445                       </taxonomy>
7446                       <clade>
7447                         <taxonomy>
7448                           <id provider="uniprot">246194</id>
7449                           <code>CARHZ</code>
7450                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
7451                         </taxonomy>
7452                       </clade>
7453                       <clade>
7454                         <taxonomy>
7455                           <id provider="uniprot">119072</id>
7456                           <code>THETN</code>
7457                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
7458                           <rank>species</rank>
7459                         </taxonomy>
7460                       </clade>
7461                     </clade>
7462                     <clade>
7463                       <taxonomy>
7464                         <id provider="uniprot">49338</id>
7465                         <code>DESHA</code>
7466                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
7467                         <synonym>Desulfitobacterium frappieri</synonym>
7468                         <rank>species</rank>
7469                       </taxonomy>
7470                     </clade>
7471                   </clade>
7472                   <clade>
7473                     <taxonomy>
7474                       <id provider="uniprot">515619</id>
7475                       <code>EUBR3</code>
7476                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
7477                     </taxonomy>
7478                   </clade>
7479                 </clade>
7480               </clade>
7481               <clade>
7482                 <name>b_224</name>
7483                 <taxonomy>
7484                   <id provider="uniprot">188709</id>
7485                   <scientific_name>Thermotogaceae</scientific_name>
7486                   <rank>family</rank>
7487                 </taxonomy>
7488                 <clade>
7489                   <name>b_222</name>
7490                   <clade>
7491                     <taxonomy>
7492                       <id provider="uniprot">381764</id>
7493                       <code>FERNB</code>
7494                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
7495                     </taxonomy>
7496                   </clade>
7497                   <clade>
7498                     <taxonomy>
7499                       <id provider="uniprot">416591</id>
7500                       <code>THELT</code>
7501                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
7502                     </taxonomy>
7503                   </clade>
7504                 </clade>
7505                 <clade>
7506                   <taxonomy>
7507                     <id provider="uniprot">2336</id>
7508                     <code>THEMA</code>
7509                     <scientific_name>Thermotoga maritima</scientific_name>
7510                     <rank>species</rank>
7511                   </taxonomy>
7512                 </clade>
7513               </clade>
7514             </clade>
7515           </clade>
7516           <clade>
7517             <name>b_267</name>
7518             <clade>
7519               <name>b_263</name>
7520               <clade>
7521                 <name>b_251</name>
7522                 <clade>
7523                   <name>b_249</name>
7524                   <clade>
7525                     <name>b_245</name>
7526                     <clade>
7527                       <name>b_237</name>
7528                       <clade>
7529                         <name>b_233</name>
7530                         <taxonomy>
7531                           <id provider="uniprot">31969</id>
7532                           <scientific_name>Mollicutes</scientific_name>
7533                           <rank>class</rank>
7534                         </taxonomy>
7535                         <clade>
7536                           <name>b_231</name>
7537                           <clade>
7538                             <name>b_229</name>
7539                             <taxonomy>
7540                               <scientific_name>Mycoplasma</scientific_name>
7541                             </taxonomy>
7542                             <clade>
7543                               <taxonomy>
7544                                 <id provider="uniprot">2097</id>
7545                                 <code>MYCGE</code>
7546                                 <scientific_name>Mycoplasma genitalium</scientific_name>
7547                                 <rank>species</rank>
7548                               </taxonomy>
7549                             </clade>
7550                             <clade>
7551                               <taxonomy>
7552                                 <id provider="uniprot">2104</id>
7553                                 <code>MYCPN</code>
7554                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
7555                                 <rank>species</rank>
7556                               </taxonomy>
7557                             </clade>
7558                           </clade>
7559                           <clade>
7560                             <taxonomy>
7561                               <id provider="uniprot">2151</id>
7562                               <code>MESFL</code>
7563                               <scientific_name>Mesoplasma florum</scientific_name>
7564                               <synonym>Acholeplasma florum</synonym>
7565                               <rank>species</rank>
7566                             </taxonomy>
7567                           </clade>
7568                         </clade>
7569                         <clade>
7570                           <taxonomy>
7571                             <id provider="uniprot">134821</id>
7572                             <code>UREPA</code>
7573                             <scientific_name>Ureaplasma parvum</scientific_name>
7574                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
7575                             <rank>species</rank>
7576                           </taxonomy>
7577                         </clade>
7578                       </clade>
7579                       <clade>
7580                         <name>b_236</name>
7581                         <taxonomy>
7582                           <id provider="uniprot">137</id>
7583                           <scientific_name>Spirochaetaceae</scientific_name>
7584                           <rank>family</rank>
7585                         </taxonomy>
7586                         <clade>
7587                           <taxonomy>
7588                             <id provider="uniprot">139</id>
7589                             <code>BORBU</code>
7590                             <scientific_name>Borrelia burgdorferi</scientific_name>
7591                             <common_name>Lyme disease spirochete</common_name>
7592                             <rank>species</rank>
7593                           </taxonomy>
7594                         </clade>
7595                         <clade>
7596                           <taxonomy>
7597                             <id provider="uniprot">160</id>
7598                             <code>TREPA</code>
7599                             <scientific_name>Treponema pallidum</scientific_name>
7600                             <rank>species</rank>
7601                           </taxonomy>
7602                         </clade>
7603                       </clade>
7604                     </clade>
7605                     <clade>
7606                       <name>b_244</name>
7607                       <clade>
7608                         <name>b_242</name>
7609                         <taxonomy>
7610                           <id provider="uniprot">1113537</id>
7611                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
7612                         </taxonomy>
7613                         <clade>
7614                           <name>b_240</name>
7615                           <clade>
7616                             <taxonomy>
7617                               <id provider="uniprot">83558</id>
7618                               <code>CHLPN</code>
7619                               <scientific_name>Chlamydia pneumoniae</scientific_name>
7620                               <synonym>Chlamydophila pneumoniae</synonym>
7621                               <rank>species</rank>
7622                             </taxonomy>
7623                           </clade>
7624                           <clade>
7625                             <taxonomy>
7626                               <id provider="uniprot">264202</id>
7627                               <code>CHLFF</code>
7628                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
7629                             </taxonomy>
7630                           </clade>
7631                         </clade>
7632                         <clade>
7633                           <taxonomy>
7634                             <id provider="uniprot">83560</id>
7635                             <code>CHLMU</code>
7636                             <scientific_name>Chlamydia muridarum</scientific_name>
7637                             <rank>species</rank>
7638                           </taxonomy>
7639                         </clade>
7640                       </clade>
7641                       <clade>
7642                         <taxonomy>
7643                           <id provider="uniprot">785</id>
7644                           <code>RICTY</code>
7645                           <scientific_name>Rickettsia typhi</scientific_name>
7646                           <rank>species</rank>
7647                         </taxonomy>
7648                       </clade>
7649                     </clade>
7650                   </clade>
7651                   <clade>
7652                     <taxonomy>
7653                       <id provider="uniprot">28211</id>
7654                       <scientific_name>Alphaproteobacteria</scientific_name>
7655                       <rank>class</rank>
7656                     </taxonomy>
7657                     <clade>
7658                       <taxonomy>
7659                         <id provider="uniprot">38323</id>
7660                         <code>BARHE</code>
7661                         <scientific_name>Bartonella henselae</scientific_name>
7662                         <synonym>Rochalimaea henselae</synonym>
7663                         <rank>species</rank>
7664                       </taxonomy>
7665                     </clade>
7666                     <clade>
7667                       <taxonomy>
7668                         <id provider="uniprot">198252</id>
7669                         <code>PELUB</code>
7670                         <scientific_name>Pelagibacter ubique</scientific_name>
7671                         <rank>species</rank>
7672                       </taxonomy>
7673                     </clade>
7674                     <clade>
7675                       <taxonomy>
7676                         <id provider="uniprot">780</id>
7677                         <scientific_name>Rickettsia</scientific_name>
7678                         <rank>genus</rank>
7679                       </taxonomy>
7680                       <clade>
7681                         <taxonomy>
7682                           <id provider="uniprot">391896</id>
7683                           <code>RICB8</code>
7684                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
7685                         </taxonomy>
7686                       </clade>
7687                       <clade>
7688                         <taxonomy>
7689                           <id provider="uniprot">452659</id>
7690                           <code>RICRO</code>
7691                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
7692                           <rank>strain</rank>
7693                         </taxonomy>
7694                       </clade>
7695                     </clade>
7696                   </clade>
7697                 </clade>
7698                 <clade>
7699                   <taxonomy>
7700                     <id provider="uniprot">263</id>
7701                     <code>FRATU</code>
7702                     <scientific_name>Francisella tularensis</scientific_name>
7703                     <rank>species</rank>
7704                   </taxonomy>
7705                 </clade>
7706               </clade>
7707               <clade>
7708                 <name>b_262</name>
7709                 <clade>
7710                   <name>b_260</name>
7711                   <clade>
7712                     <name>b_258</name>
7713                     <taxonomy>
7714                       <id provider="uniprot">186826</id>
7715                       <scientific_name>Lactobacillales</scientific_name>
7716                       <rank>order</rank>
7717                     </taxonomy>
7718                     <clade>
7719                       <name>b_256</name>
7720                       <taxonomy>
7721                         <id provider="uniprot">1300</id>
7722                         <scientific_name>Streptococcaceae</scientific_name>
7723                         <rank>family</rank>
7724                       </taxonomy>
7725                       <clade>
7726                         <name>b_254</name>
7727                         <taxonomy>
7728                           <id provider="uniprot">1301</id>
7729                           <scientific_name>Streptococcus</scientific_name>
7730                           <rank>genus</rank>
7731                         </taxonomy>
7732                         <clade>
7733                           <taxonomy>
7734                             <id provider="uniprot">1313</id>
7735                             <code>STRPN</code>
7736                             <scientific_name>Streptococcus pneumoniae</scientific_name>
7737                             <rank>species</rank>
7738                           </taxonomy>
7739                         </clade>
7740                         <clade>
7741                           <taxonomy>
7742                             <id provider="uniprot">1314</id>
7743                             <code>STRPY</code>
7744                             <scientific_name>Streptococcus pyogenes</scientific_name>
7745                             <rank>species</rank>
7746                           </taxonomy>
7747                         </clade>
7748                       </clade>
7749                       <clade>
7750                         <taxonomy>
7751                           <id provider="uniprot">1360</id>
7752                           <code>LACLA</code>
7753                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
7754                           <synonym>Streptococcus lactis</synonym>
7755                           <rank>subspecies</rank>
7756                         </taxonomy>
7757                       </clade>
7758                     </clade>
7759                     <clade>
7760                       <taxonomy>
7761                         <id provider="uniprot">1579</id>
7762                         <code>LACAC</code>
7763                         <scientific_name>Lactobacillus acidophilus</scientific_name>
7764                         <rank>species</rank>
7765                       </taxonomy>
7766                     </clade>
7767                   </clade>
7768                   <clade>
7769                     <taxonomy>
7770                       <id provider="uniprot">216816</id>
7771                       <code>BIFLO</code>
7772                       <scientific_name>Bifidobacterium longum</scientific_name>
7773                       <rank>species</rank>
7774                     </taxonomy>
7775                   </clade>
7776                 </clade>
7777                 <clade>
7778                   <taxonomy>
7779                     <id provider="uniprot">851</id>
7780                     <code>FUSNU</code>
7781                     <scientific_name>Fusobacterium nucleatum</scientific_name>
7782                     <rank>species</rank>
7783                   </taxonomy>
7784                 </clade>
7785               </clade>
7786             </clade>
7787             <clade>
7788               <name>b_266</name>
7789               <taxonomy>
7790                 <id provider="uniprot">61434</id>
7791                 <scientific_name>Dehalococcoides</scientific_name>
7792                 <rank>genus</rank>
7793               </taxonomy>
7794               <clade>
7795                 <taxonomy>
7796                   <id provider="uniprot">243164</id>
7797                   <code>DEHE1</code>
7798                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
7799                 </taxonomy>
7800               </clade>
7801               <clade>
7802                 <taxonomy>
7803                   <id provider="uniprot">216389</id>
7804                   <code>DEHSB</code>
7805                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
7806                   <rank>species</rank>
7807                 </taxonomy>
7808               </clade>
7809             </clade>
7810           </clade>
7811         </clade>
7812         <clade>
7813           <name>b_277</name>
7814           <taxonomy>
7815             <id provider="uniprot">29547</id>
7816             <scientific_name>Epsilonproteobacteria</scientific_name>
7817             <rank>class</rank>
7818           </taxonomy>
7819           <clade>
7820             <name>b_273</name>
7821             <clade>
7822               <taxonomy>
7823                 <id provider="uniprot">387092</id>
7824                 <code>NITSB</code>
7825                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
7826                 <rank>species</rank>
7827               </taxonomy>
7828             </clade>
7829             <clade>
7830               <taxonomy>
7831                 <id provider="uniprot">387093</id>
7832                 <code>SULNB</code>
7833                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
7834                 <rank>species</rank>
7835               </taxonomy>
7836             </clade>
7837           </clade>
7838           <clade>
7839             <name>b_276</name>
7840             <taxonomy>
7841               <id provider="uniprot">213849</id>
7842               <scientific_name>Campylobacterales</scientific_name>
7843               <rank>order</rank>
7844             </taxonomy>
7845             <clade>
7846               <taxonomy>
7847                 <id provider="uniprot">197</id>
7848                 <code>CAMJE</code>
7849                 <scientific_name>Campylobacter jejuni</scientific_name>
7850                 <rank>species</rank>
7851               </taxonomy>
7852             </clade>
7853             <clade>
7854               <taxonomy>
7855                 <id provider="uniprot">357544</id>
7856                 <code>HELPH</code>
7857                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
7858               </taxonomy>
7859             </clade>
7860           </clade>
7861         </clade>
7862       </clade>
7863       <clade>
7864         <taxonomy>
7865           <id provider="uniprot">224324</id>
7866           <code>AQUAE</code>
7867           <scientific_name>Aquifex aeolicus (strain VF5)</scientific_name>
7868           <rank>strain</rank>
7869         </taxonomy>
7870       </clade>
7871     </clade>
7872   </clade>
7873 </phylogeny>
7874 </phyloxml>