2a620bb3f3fdcb2128bd98ba1e777a5afec85359
[jalview.git] / forester / data / tol_154.xml
1 <?xml version="1.0" encoding="UTF-8"?>\r
2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
3 <phylogeny rooted="true" rerootable="false">\r
4   <name>tol_154.xml</name>\r
5   <clade>\r
6     <taxonomy>\r
7       <id provider="uniprot">131567</id>\r
8       <scientific_name>cellular organisms</scientific_name>\r
9     </taxonomy>\r
10     <clade>\r
11       <taxonomy>\r
12         <scientific_name>Neomura</scientific_name>\r
13       </taxonomy>\r
14       <clade>\r
15         <taxonomy>\r
16           <id provider="uniprot">2759</id>\r
17           <scientific_name>Eukaryota</scientific_name>\r
18           <rank>superkingdom</rank>\r
19         </taxonomy>\r
20         <clade>\r
21           <name>Unikonta</name>\r
22           <clade>\r
23             <taxonomy>\r
24               <id provider="uniprot">33154</id>\r
25               <scientific_name>Opisthokonta</scientific_name>\r
26               <common_name>Fungi/Metazoa group</common_name>\r
27             </taxonomy>\r
28             <clade>\r
29               <taxonomy>\r
30                 <scientific_name>Holozoa</scientific_name>\r
31               </taxonomy>\r
32               <clade>\r
33                 <name>Choanoflagellatea &amp; Metazoa</name>\r
34                 <clade>\r
35                   <taxonomy>\r
36                     <id provider="uniprot">33208</id>\r
37                     <scientific_name>Metazoa</scientific_name>\r
38                     <rank>kingdom</rank>\r
39                   </taxonomy>\r
40                   <clade>\r
41                     <taxonomy>\r
42                       <id provider="uniprot">6072</id>\r
43                       <scientific_name>Eumetazoa</scientific_name>\r
44                     </taxonomy>\r
45                     <reference doi="10.1038/nature06614">\r
46                     </reference>\r
47                     <clade>\r
48                       <name>Bilateria &amp; Cnidaria</name>\r
49                       <clade>\r
50                         <taxonomy>\r
51                           <id provider="uniprot">33213</id>\r
52                           <scientific_name>Bilateria</scientific_name>\r
53                         </taxonomy>\r
54                         <clade>\r
55                           <taxonomy>\r
56                             <id provider="uniprot">33511</id>\r
57                             <scientific_name>Deuterostomia</scientific_name>\r
58                           </taxonomy>\r
59                           <reference doi="10.1038/nature04336">\r
60                           </reference>\r
61                           <clade>\r
62                             <taxonomy>\r
63                               <id provider="uniprot">7711</id>\r
64                               <scientific_name>Chordata</scientific_name>\r
65                               <rank>phylum</rank>\r
66                             </taxonomy>\r
67                             <clade>\r
68                               <name>Urochordata &amp; Vertebrata</name>\r
69                               <clade>\r
70                                 <taxonomy>\r
71                                   <id provider="uniprot">7742</id>\r
72                                   <scientific_name>Vertebrata</scientific_name>\r
73                                 </taxonomy>\r
74                                 <clade>\r
75                                   <taxonomy>\r
76                                     <id provider="uniprot">7776</id>\r
77                                     <scientific_name>Gnathostomata</scientific_name>\r
78                                     <common_name>jawed vertebrates</common_name>\r
79                                     <rank>superclass</rank>\r
80                                   </taxonomy>\r
81                                   <clade>\r
82                                     <taxonomy>\r
83                                       <id provider="uniprot">117571</id>\r
84                                       <scientific_name>Euteleostomi</scientific_name>\r
85                                       <common_name>bony vertebrates</common_name>\r
86                                     </taxonomy>\r
87                                     <clade>\r
88                                       <taxonomy>\r
89                                         <id provider="uniprot">8287</id>\r
90                                         <scientific_name>Sarcopterygii</scientific_name>\r
91                                         <common_name>lobe-finned fish</common_name>\r
92                                       </taxonomy>\r
93                                       <clade>\r
94                                         <taxonomy>\r
95                                           <id provider="uniprot">32523</id>\r
96                                           <scientific_name>Tetrapoda</scientific_name>\r
97                                         </taxonomy>\r
98                                         <clade>\r
99                                           <taxonomy>\r
100                                             <id provider="uniprot">32524</id>\r
101                                             <scientific_name>Amniota</scientific_name>\r
102                                           </taxonomy>\r
103                                           <clade>\r
104                                             <taxonomy>\r
105                                               <id provider="uniprot">40674</id>\r
106                                               <scientific_name>Mammalia</scientific_name>\r
107                                               <rank>class</rank>\r
108                                             </taxonomy>\r
109                                             <clade>\r
110                                               <name>Theria</name>\r
111                                               <clade>\r
112                                                 <taxonomy>\r
113                                                   <id provider="uniprot">9347</id>\r
114                                                   <scientific_name>Eutheria</scientific_name>\r
115                                                   <common_name>Placental mammals</common_name>\r
116                                                 </taxonomy>\r
117                                                 <reference doi="10.1002/bies.200900053">\r
118                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
119                                                 </reference>\r
120                                                 <clade>\r
121                                                   <taxonomy>\r
122                                                     <scientific_name>Boreoeutheria</scientific_name>\r
123                                                     <synonym>Boreotheria</synonym>\r
124                                                   </taxonomy>\r
125                                                   <clade>\r
126                                                     <taxonomy>\r
127                                                       <id provider="uniprot">314146</id>\r
128                                                       <scientific_name>Euarchontoglires</scientific_name>\r
129                                                       <rank>superorder</rank>\r
130                                                     </taxonomy>\r
131                                                     <clade>\r
132                                                       <taxonomy>\r
133                                                         <scientific_name>Euarchonta</scientific_name>\r
134                                                       </taxonomy>\r
135                                                       <clade>\r
136                                                         <taxonomy>\r
137                                                           <id provider="uniprot">9443</id>\r
138                                                           <scientific_name>Primates</scientific_name>\r
139                                                           <rank>order</rank>\r
140                                                         </taxonomy>\r
141                                                         <clade>\r
142                                                           <taxonomy>\r
143                                                             <id provider="uniprot">376913</id>\r
144                                                             <scientific_name>Haplorrhini</scientific_name>\r
145                                                             <rank>suborder</rank>\r
146                                                           </taxonomy>\r
147                                                           <clade>\r
148                                                             <taxonomy>\r
149                                                               <id provider="uniprot">314293</id>\r
150                                                               <scientific_name>Simiiformes</scientific_name>\r
151                                                               <rank>infraorder</rank>\r
152                                                             </taxonomy>\r
153                                                             <clade>\r
154                                                               <taxonomy>\r
155                                                                 <id provider="uniprot">9526</id>\r
156                                                                 <scientific_name>Catarrhini</scientific_name>\r
157                                                               </taxonomy>\r
158                                                               <clade>\r
159                                                                 <taxonomy>\r
160                                                                   <id provider="uniprot">314295</id>\r
161                                                                   <scientific_name>Hominoidea</scientific_name>\r
162                                                                   <common_name>Apes</common_name>\r
163                                                                   <rank>superfamily</rank>\r
164                                                                 </taxonomy>\r
165                                                                 <clade>\r
166                                                                   <taxonomy>\r
167                                                                     <id provider="uniprot">9604</id>\r
168                                                                     <scientific_name>Hominidae</scientific_name>\r
169                                                                     <common_name>Great apes</common_name>\r
170                                                                     <rank>family</rank>\r
171                                                                   </taxonomy>\r
172                                                                   <clade>\r
173                                                                     <taxonomy>\r
174                                                                       <id provider="uniprot">207598</id>\r
175                                                                       <scientific_name>Homininae</scientific_name>\r
176                                                                       <rank>subfamily</rank>\r
177                                                                     </taxonomy>\r
178                                                                     <clade>\r
179                                                                       <taxonomy>\r
180                                                                         <scientific_name>Hominini</scientific_name>\r
181                                                                         <rank>tribe</rank>\r
182                                                                       </taxonomy>\r
183                                                                       <clade>\r
184                                                                         <taxonomy>\r
185                                                                           <id provider="uniprot">9606</id>\r
186                                                                           <code>HUMAN</code>\r
187                                                                           <scientific_name>Homo sapiens</scientific_name>\r
188                                                                           <common_name>Human</common_name>\r
189                                                                           <rank>species</rank>\r
190                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
191                                                                         </taxonomy>\r
192                                                                       </clade>\r
193                                                                       <clade>\r
194                                                                         <taxonomy>\r
195                                                                           <id provider="uniprot">9598</id>\r
196                                                                           <code>PANTR</code>\r
197                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
198                                                                           <common_name>Chimpanzee</common_name>\r
199                                                                           <rank>species</rank>\r
200                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
201                                                                         </taxonomy>\r
202                                                                       </clade>\r
203                                                                     </clade>\r
204                                                                     <clade>\r
205                                                                       <taxonomy>\r
206                                                                         <id provider="uniprot">9595</id>\r
207                                                                         <code>GORGO</code>\r
208                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
209                                                                         <common_name>Western lowland gorilla</common_name>\r
210                                                                         <rank>subspecies</rank>\r
211                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
212                                                                       </taxonomy>\r
213                                                                     </clade>\r
214                                                                   </clade>\r
215                                                                   <clade>\r
216                                                                     <taxonomy>\r
217                                                                       <id provider="uniprot">9601</id>\r
218                                                                       <code>PONAB</code>\r
219                                                                       <scientific_name>Pongo abelii</scientific_name>\r
220                                                                       <common_name>Sumatran orangutan</common_name>\r
221                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
222                                                                       <rank>species</rank>\r
223                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>\r
224                                                                     </taxonomy>\r
225                                                                   </clade>\r
226                                                                 </clade>\r
227                                                                 <clade>\r
228                                                                   <taxonomy>\r
229                                                                     <id provider="uniprot">61853</id>\r
230                                                                     <code>NOMLE</code>\r
231                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
232                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
233                                                                     <synonym>Hylobates leucogenys</synonym>\r
234                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
235                                                                     <rank>species</rank>\r
236                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
237                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
238                                                                   </taxonomy>\r
239                                                                 </clade>\r
240                                                               </clade>\r
241                                                               <clade>\r
242                                                                 <taxonomy>\r
243                                                                   <id provider="uniprot">9528</id>\r
244                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
245                                                                   <rank>subfamily</rank>\r
246                                                                 </taxonomy>\r
247                                                                 <clade>\r
248                                                                   <taxonomy>\r
249                                                                     <id provider="uniprot">9544</id>\r
250                                                                     <code>MACMU</code>\r
251                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
252                                                                     <common_name>Rhesus macaque</common_name>\r
253                                                                     <rank>species</rank>\r
254                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>\r
255                                                                   </taxonomy>\r
256                                                                 </clade>\r
257                                                                 <clade>\r
258                                                                   <taxonomy>\r
259                                                                     <id provider="uniprot">9557</id>\r
260                                                                     <code>PAPHA</code>\r
261                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
262                                                                     <common_name>Hamadryas baboon</common_name>\r
263                                                                     <rank>species</rank>\r
264                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
265                                                                   </taxonomy>\r
266                                                                 </clade>\r
267                                                               </clade>\r
268                                                             </clade>\r
269                                                             <clade>\r
270                                                               <taxonomy>\r
271                                                                 <id provider="uniprot">9483</id>\r
272                                                                 <code>CALJA</code>\r
273                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
274                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
275                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
276                                                                 <rank>species</rank>\r
277                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
278                                                               </taxonomy>\r
279                                                             </clade>\r
280                                                           </clade>\r
281                                                           <clade>\r
282                                                             <taxonomy>\r
283                                                               <id provider="uniprot">9478</id>\r
284                                                               <code>TARSY</code>\r
285                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
286                                                               <common_name>Philippine tarsier</common_name>\r
287                                                               <rank>species</rank>\r
288                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
289                                                             </taxonomy>\r
290                                                           </clade>\r
291                                                         </clade>\r
292                                                         <clade>\r
293                                                           <taxonomy>\r
294                                                             <id provider="uniprot">376911</id>\r
295                                                             <scientific_name>Strepsirrhini</scientific_name>\r
296                                                             <rank>suborder</rank>\r
297                                                           </taxonomy>\r
298                                                           <clade>\r
299                                                             <taxonomy>\r
300                                                               <id provider="uniprot">30608</id>\r
301                                                               <code>MICMU</code>\r
302                                                               <scientific_name>Microcebus murinus</scientific_name>\r
303                                                               <common_name>Lesser mouse lemur</common_name>\r
304                                                               <synonym>Gray Mouse Lemur</synonym>\r
305                                                               <rank>species</rank>\r
306                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
307                                                             </taxonomy>\r
308                                                           </clade>\r
309                                                           <clade>\r
310                                                             <taxonomy>\r
311                                                               <id provider="uniprot">30611</id>\r
312                                                               <code>OTOGA</code>\r
313                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
314                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
315                                                               <synonym>Galago garnetti</synonym>\r
316                                                               <synonym>Small-eared galago</synonym>\r
317                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
318                                                               <rank>species</rank>\r
319                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
320                                                             </taxonomy>\r
321                                                           </clade>\r
322                                                         </clade>\r
323                                                       </clade>\r
324                                                       <clade>\r
325                                                         <taxonomy>\r
326                                                           <id provider="uniprot">37347</id>\r
327                                                           <code>TUPBE</code>\r
328                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
329                                                           <common_name>Common tree shrew</common_name>\r
330                                                           <synonym>Tupaia glis belangeri</synonym>\r
331                                                           <rank>species</rank>\r
332                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
333                                                         </taxonomy>\r
334                                                       </clade>\r
335                                                     </clade>\r
336                                                     <clade>\r
337                                                       <taxonomy>\r
338                                                         <id provider="uniprot">314147</id>\r
339                                                         <scientific_name>Glires</scientific_name>\r
340                                                         <common_name>Rodents and rabbits</common_name>\r
341                                                       </taxonomy>\r
342                                                       <clade>\r
343                                                         <taxonomy>\r
344                                                           <id provider="uniprot">9989</id>\r
345                                                           <scientific_name>Rodentia</scientific_name>\r
346                                                           <rank>order</rank>\r
347                                                         </taxonomy>\r
348                                                         <clade>\r
349                                                           <name>Hystricomorpha &amp; Sciurognathi</name>\r
350                                                           <reference doi="10.1186/1471-2148-9-71">\r
351                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
352                                                           </reference>\r
353                                                           <clade>\r
354                                                             <taxonomy>\r
355                                                               <id provider="uniprot">33553</id>\r
356                                                               <scientific_name>Sciurognathi</scientific_name>\r
357                                                               <rank>suborder</rank>\r
358                                                             </taxonomy>\r
359                                                             <clade>\r
360                                                               <taxonomy>\r
361                                                                 <id provider="uniprot">337687</id>\r
362                                                                 <scientific_name>Muroidea</scientific_name>\r
363                                                               </taxonomy>\r
364                                                               <clade>\r
365                                                                 <taxonomy>\r
366                                                                   <id provider="uniprot">39107</id>\r
367                                                                   <scientific_name>Murinae</scientific_name>\r
368                                                                   <rank>subfamily</rank>\r
369                                                                 </taxonomy>\r
370                                                                 <clade>\r
371                                                                   <taxonomy>\r
372                                                                     <id provider="uniprot">10090</id>\r
373                                                                     <code>MOUSE</code>\r
374                                                                     <scientific_name>Mus musculus</scientific_name>\r
375                                                                     <common_name>Mouse</common_name>\r
376                                                                     <rank>species</rank>\r
377                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>\r
378                                                                   </taxonomy>\r
379                                                                 </clade>\r
380                                                                 <clade>\r
381                                                                   <taxonomy>\r
382                                                                     <id provider="uniprot">10116</id>\r
383                                                                     <code>RAT</code>\r
384                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
385                                                                     <common_name>Rat</common_name>\r
386                                                                     <rank>species</rank>\r
387                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
388                                                                   </taxonomy>\r
389                                                                 </clade>\r
390                                                               </clade>\r
391                                                               <clade>\r
392                                                                 <taxonomy>\r
393                                                                   <id provider="uniprot">10036</id>\r
394                                                                   <code>MESAU</code>\r
395                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
396                                                                   <common_name>Golden hamster</common_name>\r
397                                                                   <rank>species</rank>\r
398                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG</uri>\r
399                                                                 </taxonomy>\r
400                                                               </clade>\r
401                                                             </clade>\r
402                                                             <clade>\r
403                                                               <taxonomy>\r
404                                                                 <id provider="uniprot">10020</id>\r
405                                                                 <code>DIPOR</code>\r
406                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
407                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
408                                                                 <rank>species</rank>\r
409                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
410                                                               </taxonomy>\r
411                                                             </clade>\r
412                                                           </clade>\r
413                                                           <clade>\r
414                                                             <taxonomy>\r
415                                                               <id provider="uniprot">33550</id>\r
416                                                               <scientific_name>Hystricognathi</scientific_name>\r
417                                                               <rank>suborder</rank>\r
418                                                             </taxonomy>\r
419                                                             <clade>\r
420                                                               <taxonomy>\r
421                                                                 <id provider="uniprot">10141</id>\r
422                                                                 <code>CAVPO</code>\r
423                                                                 <scientific_name>Cavia porcellus</scientific_name>\r
424                                                                 <common_name>Guinea pig</common_name>\r
425                                                                 <rank>species</rank>\r
426                                                                 <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>\r
427                                                               </taxonomy>\r
428                                                             </clade>\r
429                                                             <clade>\r
430                                                               <taxonomy>\r
431                                                                 <id provider="uniprot">10181</id>\r
432                                                                 <code>HETGA</code>\r
433                                                                 <scientific_name>Heterocephalus glaber</scientific_name>\r
434                                                                 <common_name>Naked mole rat</common_name>\r
435                                                                 <rank>species</rank>\r
436                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg</uri>\r
437                                                               </taxonomy>\r
438                                                             </clade>\r
439                                                           </clade>\r
440                                                         </clade>\r
441                                                         <clade>\r
442                                                           <taxonomy>\r
443                                                             <id provider="uniprot">43179</id>\r
444                                                             <code>SPETR</code>\r
445                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
446                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
447                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
448                                                             <rank>species</rank>\r
449                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
450                                                           </taxonomy>\r
451                                                         </clade>\r
452                                                       </clade>\r
453                                                       <clade>\r
454                                                         <taxonomy>\r
455                                                           <id provider="uniprot">9975</id>\r
456                                                           <scientific_name>Lagomorpha</scientific_name>\r
457                                                           <rank>order</rank>\r
458                                                         </taxonomy>\r
459                                                         <clade>\r
460                                                           <taxonomy>\r
461                                                             <id provider="uniprot">9978</id>\r
462                                                             <code>OCHPR</code>\r
463                                                             <scientific_name>Ochotona princeps</scientific_name>\r
464                                                             <common_name>Southern American pika</common_name>\r
465                                                             <rank>species</rank>\r
466                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
467                                                           </taxonomy>\r
468                                                         </clade>\r
469                                                         <clade>\r
470                                                           <taxonomy>\r
471                                                             <id provider="uniprot">9986</id>\r
472                                                             <code>RABIT</code>\r
473                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
474                                                             <common_name>Rabbit</common_name>\r
475                                                             <rank>species</rank>\r
476                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>\r
477                                                           </taxonomy>\r
478                                                         </clade>\r
479                                                       </clade>\r
480                                                     </clade>\r
481                                                   </clade>\r
482                                                   <clade>\r
483                                                     <taxonomy>\r
484                                                       <id provider="uniprot">314145</id>\r
485                                                       <scientific_name>Laurasiatheria</scientific_name>\r
486                                                       <rank>superorder</rank>\r
487                                                     </taxonomy>\r
488                                                     <clade>\r
489                                                       <taxonomy>\r
490                                                         <scientific_name>Scrotifera</scientific_name>\r
491                                                       </taxonomy>\r
492                                                       <clade>\r
493                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
494                                                         <clade>\r
495                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
496                                                           <clade>\r
497                                                             <taxonomy>\r
498                                                               <id provider="uniprot">91561</id>\r
499                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
500                                                               <common_name>Even-toed ungulates</common_name>\r
501                                                             </taxonomy>\r
502                                                             <clade>\r
503                                                               <name>Cetruminantia &amp; Suina</name>\r
504                                                               <clade>\r
505                                                                 <taxonomy>\r
506                                                                   <scientific_name>Cetruminantia</scientific_name>\r
507                                                                 </taxonomy>\r
508                                                                 <clade>\r
509                                                                   <taxonomy>\r
510                                                                     <id provider="uniprot">9895</id>\r
511                                                                     <scientific_name>Bovidae</scientific_name>\r
512                                                                     <rank>family</rank>\r
513                                                                   </taxonomy>\r
514                                                                   <clade>\r
515                                                                     <taxonomy>\r
516                                                                       <id provider="uniprot">9913</id>\r
517                                                                       <code>BOVIN</code>\r
518                                                                       <scientific_name>Bos taurus</scientific_name>\r
519                                                                       <common_name>Bovine</common_name>\r
520                                                                       <synonym>Bos bovis</synonym>\r
521                                                                       <rank>species</rank>\r
522                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>\r
523                                                                     </taxonomy>\r
524                                                                   </clade>\r
525                                                                   <clade>\r
526                                                                     <taxonomy>\r
527                                                                       <id provider="uniprot">9940</id>\r
528                                                                       <code>SHEEP</code>\r
529                                                                       <scientific_name>Ovis aries</scientific_name>\r
530                                                                       <common_name>Sheep</common_name>\r
531                                                                       <rank>species</rank>\r
532                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
533                                                                     </taxonomy>\r
534                                                                   </clade>\r
535                                                                 </clade>\r
536                                                                 <clade>\r
537                                                                   <taxonomy>\r
538                                                                     <id provider="uniprot">9721</id>\r
539                                                                     <scientific_name>Cetacea</scientific_name>\r
540                                                                     <common_name>Whales</common_name>\r
541                                                                     <rank>order</rank>\r
542                                                                   </taxonomy>\r
543                                                                   <clade>\r
544                                                                     <taxonomy>\r
545                                                                       <id provider="uniprot">9771</id>\r
546                                                                       <code>BALMU</code>\r
547                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
548                                                                       <common_name>Blue whale</common_name>\r
549                                                                       <rank>species</rank>\r
550                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
551                                                                     </taxonomy>\r
552                                                                   </clade>\r
553                                                                   <clade>\r
554                                                                     <taxonomy>\r
555                                                                       <id provider="uniprot">9739</id>\r
556                                                                       <code>TURTR</code>\r
557                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
558                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
559                                                                       <synonym>Delphinus truncatus</synonym>\r
560                                                                       <rank>species</rank>\r
561                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
562                                                                     </taxonomy>\r
563                                                                   </clade>\r
564                                                                 </clade>\r
565                                                               </clade>\r
566                                                               <clade>\r
567                                                                 <taxonomy>\r
568                                                                   <id provider="uniprot">9823</id>\r
569                                                                   <code>PIG</code>\r
570                                                                   <scientific_name>Sus scrofa</scientific_name>\r
571                                                                   <common_name>Pig</common_name>\r
572                                                                   <rank>species</rank>\r
573                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
574                                                                 </taxonomy>\r
575                                                               </clade>\r
576                                                             </clade>\r
577                                                             <clade>\r
578                                                               <taxonomy>\r
579                                                                 <id provider="uniprot">30538</id>\r
580                                                                 <code>LAMPA</code>\r
581                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
582                                                                 <common_name>Alpaca</common_name>\r
583                                                                 <synonym>Lama pacos</synonym>\r
584                                                                 <rank>species</rank>\r
585                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>\r
586                                                               </taxonomy>\r
587                                                             </clade>\r
588                                                           </clade>\r
589                                                           <clade>\r
590                                                             <taxonomy>\r
591                                                               <id provider="uniprot">9796</id>\r
592                                                               <code>HORSE</code>\r
593                                                               <scientific_name>Equus caballus</scientific_name>\r
594                                                               <common_name>Horse</common_name>\r
595                                                               <rank>species</rank>\r
596                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
597                                                             </taxonomy>\r
598                                                           </clade>\r
599                                                         </clade>\r
600                                                         <clade>\r
601                                                           <taxonomy>\r
602                                                             <id provider="uniprot">9397</id>\r
603                                                             <scientific_name>Chiroptera</scientific_name>\r
604                                                             <common_name>Bats</common_name>\r
605                                                             <rank>order</rank>\r
606                                                           </taxonomy>\r
607                                                           <clade>\r
608                                                             <taxonomy>\r
609                                                               <id provider="uniprot">59463</id>\r
610                                                               <code>MYOLU</code>\r
611                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
612                                                               <common_name>Little brown bat</common_name>\r
613                                                               <rank>species</rank>\r
614                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
615                                                             </taxonomy>\r
616                                                           </clade>\r
617                                                           <clade>\r
618                                                             <taxonomy>\r
619                                                               <id provider="uniprot">132908</id>\r
620                                                               <code>PTEVA</code>\r
621                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
622                                                               <common_name>Large flying fox</common_name>\r
623                                                               <rank>species</rank>\r
624                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
625                                                             </taxonomy>\r
626                                                           </clade>\r
627                                                         </clade>\r
628                                                       </clade>\r
629                                                       <clade>\r
630                                                         <name>Carnivora</name>\r
631                                                         <taxonomy>\r
632                                                           <id provider="uniprot">33554</id>\r
633                                                           <scientific_name>Carnivora</scientific_name>\r
634                                                           <rank>order</rank>\r
635                                                         </taxonomy>\r
636                                                         <clade>\r
637                                                           <taxonomy>\r
638                                                             <id provider="uniprot">379584</id>\r
639                                                             <scientific_name>Caniformia</scientific_name>\r
640                                                             <rank>suborder</rank>\r
641                                                           </taxonomy>\r
642                                                           <clade>\r
643                                                             <taxonomy>\r
644                                                               <id provider="uniprot">9646</id>\r
645                                                               <code>AILME</code>\r
646                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
647                                                               <common_name>Giant panda</common_name>\r
648                                                               <rank>species</rank>\r
649                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
650                                                             </taxonomy>\r
651                                                           </clade>\r
652                                                           <clade>\r
653                                                             <taxonomy>\r
654                                                               <id provider="uniprot">9615</id>\r
655                                                               <code>CANFA</code>\r
656                                                               <scientific_name>Canis familiaris</scientific_name>\r
657                                                               <common_name>Dog</common_name>\r
658                                                               <synonym>Canis lupus familiaris</synonym>\r
659                                                               <rank>subspecies</rank>\r
660                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
661                                                             </taxonomy>\r
662                                                           </clade>\r
663                                                         </clade>\r
664                                                         <clade>\r
665                                                           <taxonomy>\r
666                                                             <id provider="uniprot">9685</id>\r
667                                                             <code>FELCA</code>\r
668                                                             <scientific_name>Felis catus</scientific_name>\r
669                                                             <common_name>Cat</common_name>\r
670                                                             <synonym>Felis silvestris catus</synonym>\r
671                                                             <rank>species</rank>\r
672                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
673                                                           </taxonomy>\r
674                                                         </clade>\r
675                                                       </clade>\r
676                                                     </clade>\r
677                                                     <clade>\r
678                                                       <taxonomy>\r
679                                                         <id provider="uniprot">9362</id>\r
680                                                         <scientific_name>Insectivora</scientific_name>\r
681                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
682                                                         <rank>order</rank>\r
683                                                       </taxonomy>\r
684                                                       <clade>\r
685                                                         <taxonomy>\r
686                                                           <id provider="uniprot">9365</id>\r
687                                                           <code>ERIEU</code>\r
688                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
689                                                           <common_name>Western European hedgehog</common_name>\r
690                                                           <rank>species</rank>\r
691                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
692                                                         </taxonomy>\r
693                                                       </clade>\r
694                                                       <clade>\r
695                                                         <taxonomy>\r
696                                                           <id provider="uniprot">42254</id>\r
697                                                           <code>SORAR</code>\r
698                                                           <scientific_name>Sorex araneus</scientific_name>\r
699                                                           <common_name>Eurasian common shrew</common_name>\r
700                                                           <synonym>European shrew</synonym>\r
701                                                           <rank>species</rank>\r
702                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
703                                                         </taxonomy>\r
704                                                       </clade>\r
705                                                     </clade>\r
706                                                   </clade>\r
707                                                 </clade>\r
708                                                 <clade>\r
709                                                   <taxonomy>\r
710                                                     <scientific_name>Atlantogenata</scientific_name>\r
711                                                   </taxonomy>\r
712                                                   <clade>\r
713                                                     <taxonomy>\r
714                                                       <id provider="uniprot">311790</id>\r
715                                                       <scientific_name>Afrotheria</scientific_name>\r
716                                                       <rank>superorder</rank>\r
717                                                     </taxonomy>\r
718                                                     <clade>\r
719                                                       <taxonomy>\r
720                                                         <scientific_name>Paenungulata</scientific_name>\r
721                                                       </taxonomy>\r
722                                                       <clade>\r
723                                                         <taxonomy>\r
724                                                           <id provider="uniprot">9785</id>\r
725                                                           <code>LOXAF</code>\r
726                                                           <scientific_name>Loxodonta africana</scientific_name>\r
727                                                           <common_name>African savanna elephant</common_name>\r
728                                                           <rank>species</rank>\r
729                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
730                                                         </taxonomy>\r
731                                                       </clade>\r
732                                                       <clade>\r
733                                                         <taxonomy>\r
734                                                           <id provider="uniprot">9813</id>\r
735                                                           <code>PROCA</code>\r
736                                                           <scientific_name>Procavia capensis</scientific_name>\r
737                                                           <common_name>Cape hyrax</common_name>\r
738                                                           <synonym>Rock dassie</synonym>\r
739                                                           <rank>species</rank>\r
740                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
741                                                         </taxonomy>\r
742                                                       </clade>\r
743                                                     </clade>\r
744                                                     <clade>\r
745                                                       <taxonomy>\r
746                                                         <id provider="uniprot">9371</id>\r
747                                                         <code>ECHTE</code>\r
748                                                         <scientific_name>Echinops telfairi</scientific_name>\r
749                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
750                                                         <rank>species</rank>\r
751                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
752                                                       </taxonomy>\r
753                                                     </clade>\r
754                                                   </clade>\r
755                                                   <clade>\r
756                                                     <taxonomy>\r
757                                                       <id provider="uniprot">9348</id>\r
758                                                       <scientific_name>Xenarthra</scientific_name>\r
759                                                       <synonym>Edentata</synonym>\r
760                                                       <rank>superorder</rank>\r
761                                                     </taxonomy>\r
762                                                     <clade>\r
763                                                       <taxonomy>\r
764                                                         <id provider="uniprot">9358</id>\r
765                                                         <code>CHOHO</code>\r
766                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
767                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
768                                                         <rank>species</rank>\r
769                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
770                                                       </taxonomy>\r
771                                                     </clade>\r
772                                                     <clade>\r
773                                                       <taxonomy>\r
774                                                         <id provider="uniprot">9361</id>\r
775                                                         <code>DASNO</code>\r
776                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
777                                                         <common_name>Nine-banded armadillo</common_name>\r
778                                                         <rank>species</rank>\r
779                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
780                                                       </taxonomy>\r
781                                                     </clade>\r
782                                                   </clade>\r
783                                                 </clade>\r
784                                               </clade>\r
785                                               <clade>\r
786                                                 <taxonomy>\r
787                                                   <id provider="uniprot">9263</id>\r
788                                                   <scientific_name>Metatheria</scientific_name>\r
789                                                   <common_name>Marsupials</common_name>\r
790                                                 </taxonomy>\r
791                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
792                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
793                                                 </reference>\r
794                                                 <reference>\r
795                                                 </reference>\r
796                                                 <clade>\r
797                                                   <taxonomy>\r
798                                                     <scientific_name>Eometatheria</scientific_name>\r
799                                                   </taxonomy>\r
800                                                   <clade>\r
801                                                     <taxonomy>\r
802                                                       <id provider="uniprot">9315</id>\r
803                                                       <code>MACEU</code>\r
804                                                       <scientific_name>Macropus eugenii</scientific_name>\r
805                                                       <common_name>Tammar wallaby</common_name>\r
806                                                       <rank>species</rank>\r
807                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
808                                                     </taxonomy>\r
809                                                   </clade>\r
810                                                   <clade>\r
811                                                     <taxonomy>\r
812                                                       <id provider="uniprot">9305</id>\r
813                                                       <code>SARHA</code>\r
814                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
815                                                       <common_name>Tasmanian devil</common_name>\r
816                                                       <synonym>Sarcophilus laniarius</synonym>\r
817                                                       <rank>species</rank>\r
818                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
819                                                     </taxonomy>\r
820                                                   </clade>\r
821                                                 </clade>\r
822                                                 <clade>\r
823                                                   <taxonomy>\r
824                                                     <id provider="uniprot">13616</id>\r
825                                                     <code>MONDO</code>\r
826                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
827                                                     <common_name>Short-tailed gray opossum</common_name>\r
828                                                     <rank>species</rank>\r
829                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
830                                                   </taxonomy>\r
831                                                 </clade>\r
832                                               </clade>\r
833                                             </clade>\r
834                                             <clade>\r
835                                               <taxonomy>\r
836                                                 <id provider="uniprot">9258</id>\r
837                                                 <code>ORNAN</code>\r
838                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
839                                                 <common_name>Duckbill platypus</common_name>\r
840                                                 <rank>species</rank>\r
841                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>\r
842                                               </taxonomy>\r
843                                             </clade>\r
844                                           </clade>\r
845                                           <clade>\r
846                                             <taxonomy>\r
847                                               <id provider="uniprot">8457</id>\r
848                                               <scientific_name>Sauropsida</scientific_name>\r
849                                             </taxonomy>\r
850                                             <clade>\r
851                                               <taxonomy>\r
852                                                 <id provider="uniprot">1329799</id>\r
853                                                 <scientific_name>Testudines + Archosauria group</scientific_name>\r
854                                               </taxonomy>\r
855                                               <reference doi="10.1038/ng.2615">\r
856                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
857                                               </reference>\r
858                                               <reference>\r
859                                               </reference>\r
860                                               <reference>\r
861                                               </reference>\r
862                                               <clade>\r
863                                                 <taxonomy>\r
864                                                   <id provider="uniprot">8492</id>\r
865                                                   <scientific_name>Archosauria</scientific_name>\r
866                                                 </taxonomy>\r
867                                                 <clade>\r
868                                                   <taxonomy>\r
869                                                     <id provider="uniprot">8825</id>\r
870                                                     <scientific_name>Neognathae</scientific_name>\r
871                                                     <rank>superorder</rank>\r
872                                                   </taxonomy>\r
873                                                   <clade>\r
874                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
875                                                     <clade>\r
876                                                       <taxonomy>\r
877                                                         <id provider="uniprot">9005</id>\r
878                                                         <scientific_name>Phasianidae</scientific_name>\r
879                                                         <rank>family</rank>\r
880                                                       </taxonomy>\r
881                                                       <clade>\r
882                                                         <taxonomy>\r
883                                                           <id provider="uniprot">9031</id>\r
884                                                           <code>CHICK</code>\r
885                                                           <scientific_name>Gallus gallus</scientific_name>\r
886                                                           <common_name>Chicken</common_name>\r
887                                                           <synonym>Gallus domesticus</synonym>\r
888                                                           <rank>species</rank>\r
889                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
890                                                         </taxonomy>\r
891                                                       </clade>\r
892                                                       <clade>\r
893                                                         <taxonomy>\r
894                                                           <id provider="uniprot">9103</id>\r
895                                                           <code>MELGA</code>\r
896                                                           <scientific_name>Meleagris gallopavo</scientific_name>\r
897                                                           <common_name>Common turkey</common_name>\r
898                                                           <rank>species</rank>\r
899                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
900                                                         </taxonomy>\r
901                                                       </clade>\r
902                                                     </clade>\r
903                                                     <clade>\r
904                                                       <taxonomy>\r
905                                                         <id provider="uniprot">8839</id>\r
906                                                         <code>ANAPL</code>\r
907                                                         <scientific_name>Anas platyrhynchos</scientific_name>\r
908                                                         <common_name>Domestic duck</common_name>\r
909                                                         <synonym>Anas boschas</synonym>\r
910                                                         <rank>species</rank>\r
911                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
912                                                       </taxonomy>\r
913                                                     </clade>\r
914                                                   </clade>\r
915                                                   <clade>\r
916                                                     <taxonomy>\r
917                                                       <id provider="uniprot">9126</id>\r
918                                                       <scientific_name>Passeriformes</scientific_name>\r
919                                                       <rank>order</rank>\r
920                                                     </taxonomy>\r
921                                                     <clade>\r
922                                                       <taxonomy>\r
923                                                         <id provider="uniprot">59729</id>\r
924                                                         <code>TAEGU</code>\r
925                                                         <scientific_name>Taeniopygia guttata</scientific_name>\r
926                                                         <common_name>Zebra finch</common_name>\r
927                                                         <synonym>Poephila guttata</synonym>\r
928                                                         <rank>species</rank>\r
929                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
930                                                       </taxonomy>\r
931                                                     </clade>\r
932                                                     <clade>\r
933                                                       <taxonomy>\r
934                                                         <id provider="uniprot">59894</id>\r
935                                                         <code>FICAL</code>\r
936                                                         <scientific_name>Ficedula albicollis</scientific_name>\r
937                                                         <common_name>Collared flycatcher</common_name>\r
938                                                         <synonym>Muscicapa albicollis</synonym>\r
939                                                         <rank>species</rank>\r
940                                                         <uri>http://www.biolib.cz/IMG/GAL/156619.jpg</uri>\r
941                                                       </taxonomy>\r
942                                                     </clade>\r
943                                                   </clade>\r
944                                                 </clade>\r
945                                                 <clade>\r
946                                                   <taxonomy>\r
947                                                     <id provider="uniprot">8496</id>\r
948                                                     <code>ALLMI</code>\r
949                                                     <scientific_name>Alligator mississippiensis</scientific_name>\r
950                                                     <common_name>American alligator</common_name>\r
951                                                     <rank>species</rank>\r
952                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>\r
953                                                   </taxonomy>\r
954                                                 </clade>\r
955                                               </clade>\r
956                                               <clade>\r
957                                                 <taxonomy>\r
958                                                   <id provider="uniprot">13735</id>\r
959                                                   <code>PELSI</code>\r
960                                                   <scientific_name>Pelodiscus sinensis</scientific_name>\r
961                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>\r
962                                                   <common_name>Chinese softshell turtle</common_name>\r
963                                                   <synonym>Trionyx sinensis</synonym>\r
964                                                   <rank>species</rank>\r
965                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>\r
966                                                 </taxonomy>\r
967                                               </clade>\r
968                                             </clade>\r
969                                             <clade>\r
970                                               <taxonomy>\r
971                                                 <id provider="uniprot">1329911</id>\r
972                                                 <scientific_name>Toxicofera</scientific_name>\r
973                                               </taxonomy>\r
974                                               <clade>\r
975                                                 <taxonomy>\r
976                                                   <id provider="uniprot">8570</id>\r
977                                                   <scientific_name>Serpentes</scientific_name>\r
978                                                   <common_name>snakes</common_name>\r
979                                                   <rank>infraorder</rank>\r
980                                                 </taxonomy>\r
981                                                 <clade>\r
982                                                   <taxonomy>\r
983                                                     <id provider="uniprot">8665</id>\r
984                                                     <code>OPHHA</code>\r
985                                                     <scientific_name>Ophiophagus hannah</scientific_name>\r
986                                                     <common_name>King cobra</common_name>\r
987                                                     <synonym>Naja hannah</synonym>\r
988                                                     <rank>species</rank>\r
989                                                     <uri>http://www.thehindu.com/multimedia/dynamic/01674/KING_COBRA_1674012e.jpg</uri>\r
990                                                   </taxonomy>\r
991                                                 </clade>\r
992                                                 <clade>\r
993                                                   <taxonomy>\r
994                                                     <id provider="uniprot">176946</id>\r
995                                                     <code>PYTBI</code>\r
996                                                     <scientific_name>Python bivittatus</scientific_name>\r
997                                                     <common_name>Burmese python</common_name>\r
998                                                     <synonym>Python molurus bivittatus</synonym>\r
999                                                     <rank>species</rank>\r
1000                                                     <uri>http://www.nps.gov/ever/parknews/images/KLwoodrat_python_5626.jpg</uri>\r
1001                                                   </taxonomy>\r
1002                                                 </clade>\r
1003                                               </clade>\r
1004                                               <clade>\r
1005                                                 <taxonomy>\r
1006                                                   <id provider="uniprot">28377</id>\r
1007                                                   <code>ANOCA</code>\r
1008                                                   <scientific_name>Anolis carolinensis</scientific_name>\r
1009                                                   <authority>Voigt, 1832</authority>\r
1010                                                   <common_name>Green anole</common_name>\r
1011                                                   <synonym>American chameleon</synonym>\r
1012                                                   <rank>species</rank>\r
1013                                                   <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
1014                                                   <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
1015                                                 </taxonomy>\r
1016                                               </clade>\r
1017                                             </clade>\r
1018                                           </clade>\r
1019                                         </clade>\r
1020                                         <clade>\r
1021                                           <taxonomy>\r
1022                                             <id provider="uniprot">8353</id>\r
1023                                             <scientific_name>Xenopus</scientific_name>\r
1024                                             <rank>genus</rank>\r
1025                                           </taxonomy>\r
1026                                           <clade>\r
1027                                             <taxonomy>\r
1028                                               <id provider="uniprot">8355</id>\r
1029                                               <code>XENLA</code>\r
1030                                               <scientific_name>Xenopus laevis</scientific_name>\r
1031                                               <authority>Daudin, 1802</authority>\r
1032                                               <common_name>African clawed frog</common_name>\r
1033                                               <synonym>Bufo laevis</synonym>\r
1034                                               <rank>species</rank>\r
1035                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
1036                                             </taxonomy>\r
1037                                           </clade>\r
1038                                           <clade>\r
1039                                             <taxonomy>\r
1040                                               <id provider="uniprot">8364</id>\r
1041                                               <code>XENTR</code>\r
1042                                               <scientific_name>Xenopus tropicalis</scientific_name>\r
1043                                               <common_name>Western clawed frog</common_name>\r
1044                                               <synonym>Silurana tropicalis</synonym>\r
1045                                               <rank>species</rank>\r
1046                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
1047                                             </taxonomy>\r
1048                                           </clade>\r
1049                                         </clade>\r
1050                                       </clade>\r
1051                                       <clade>\r
1052                                         <taxonomy>\r
1053                                           <id provider="uniprot">7897</id>\r
1054                                           <code>LATCH</code>\r
1055                                           <scientific_name>Latimeria chalumnae</scientific_name>\r
1056                                           <common_name>West Indian ocean coelacanth</common_name>\r
1057                                           <rank>species</rank>\r
1058                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>\r
1059                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>\r
1060                                         </taxonomy>\r
1061                                       </clade>\r
1062                                     </clade>\r
1063                                     <clade>\r
1064                                       <name>Teleostei</name>\r
1065                                       <taxonomy>\r
1066                                         <id provider="uniprot">32443</id>\r
1067                                         <scientific_name>Teleostei</scientific_name>\r
1068                                       </taxonomy>\r
1069                                       <clade>\r
1070                                         <taxonomy>\r
1071                                           <id provider="uniprot">123368</id>\r
1072                                           <scientific_name>Acanthomorpha</scientific_name>\r
1073                                         </taxonomy>\r
1074                                         <clade>\r
1075                                           <taxonomy>\r
1076                                             <id provider="uniprot">32485</id>\r
1077                                             <scientific_name>Percomorpha</scientific_name>\r
1078                                           </taxonomy>\r
1079                                           <clade>\r
1080                                             <taxonomy>\r
1081                                               <id provider="uniprot">129949</id>\r
1082                                               <scientific_name>Smegmamorpha</scientific_name>\r
1083                                             </taxonomy>\r
1084                                             <clade>\r
1085                                               <taxonomy>\r
1086                                                 <id provider="uniprot">32456</id>\r
1087                                                 <scientific_name>Atherinomorpha</scientific_name>\r
1088                                               </taxonomy>\r
1089                                               <clade>\r
1090                                                 <taxonomy>\r
1091                                                   <id provider="uniprot">8090</id>\r
1092                                                   <code>ORYLA</code>\r
1093                                                   <scientific_name>Oryzias latipes</scientific_name>\r
1094                                                   <common_name>Medaka fish</common_name>\r
1095                                                   <synonym>Japanese ricefish</synonym>\r
1096                                                   <rank>species</rank>\r
1097                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
1098                                                 </taxonomy>\r
1099                                               </clade>\r
1100                                               <clade>\r
1101                                                 <taxonomy>\r
1102                                                   <id provider="uniprot">8083</id>\r
1103                                                   <code>XIPMA</code>\r
1104                                                   <scientific_name>Xiphophorus maculatus</scientific_name>\r
1105                                                   <authority>Guenther, 1866</authority>\r
1106                                                   <common_name>Southern platyfish</common_name>\r
1107                                                   <synonym>Platypoecilus maculatus</synonym>\r
1108                                                   <rank>species</rank>\r
1109                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>\r
1110                                                 </taxonomy>\r
1111                                               </clade>\r
1112                                             </clade>\r
1113                                             <clade>\r
1114                                               <taxonomy>\r
1115                                                 <id provider="uniprot">69293</id>\r
1116                                                 <code>GASAC</code>\r
1117                                                 <scientific_name>Gasterosteus aculeatus</scientific_name>\r
1118                                                 <common_name>Three-spined stickleback</common_name>\r
1119                                                 <rank>species</rank>\r
1120                                                 <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>\r
1121                                               </taxonomy>\r
1122                                             </clade>\r
1123                                           </clade>\r
1124                                           <clade>\r
1125                                             <taxonomy>\r
1126                                               <id provider="uniprot">31031</id>\r
1127                                               <scientific_name>Tetraodontidae</scientific_name>\r
1128                                               <common_name>puffers</common_name>\r
1129                                               <rank>family</rank>\r
1130                                             </taxonomy>\r
1131                                             <clade>\r
1132                                               <taxonomy>\r
1133                                                 <id provider="uniprot">31033</id>\r
1134                                                 <code>TAKRU</code>\r
1135                                                 <scientific_name>Takifugu rubripes</scientific_name>\r
1136                                                 <common_name>Japanese pufferfish</common_name>\r
1137                                                 <synonym>Fugu rubripes</synonym>\r
1138                                                 <rank>species</rank>\r
1139                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
1140                                               </taxonomy>\r
1141                                             </clade>\r
1142                                             <clade>\r
1143                                               <taxonomy>\r
1144                                                 <id provider="uniprot">99883</id>\r
1145                                                 <code>TETNG</code>\r
1146                                                 <scientific_name>Tetraodon nigroviridis</scientific_name>\r
1147                                                 <common_name>Green puffer</common_name>\r
1148                                                 <synonym>Chelonodon nigroviridis</synonym>\r
1149                                                 <rank>species</rank>\r
1150                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
1151                                               </taxonomy>\r
1152                                             </clade>\r
1153                                           </clade>\r
1154                                           <clade>\r
1155                                             <taxonomy>\r
1156                                               <id provider="uniprot">8128</id>\r
1157                                               <code>ORENI</code>\r
1158                                               <scientific_name>Tilapia nilotica</scientific_name>\r
1159                                               <authority>Linnaeus, 1758</authority>\r
1160                                               <common_name>Nile tilapia</common_name>\r
1161                                               <synonym>Tilapia nilotica</synonym>\r
1162                                               <rank>species</rank>\r
1163                                               <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>\r
1164                                             </taxonomy>\r
1165                                           </clade>\r
1166                                         </clade>\r
1167                                         <clade>\r
1168                                           <taxonomy>\r
1169                                             <id provider="uniprot">8049</id>\r
1170                                             <code>GADMO</code>\r
1171                                             <scientific_name>Gadus morhua</scientific_name>\r
1172                                             <common_name>Atlantic cod</common_name>\r
1173                                             <rank>species</rank>\r
1174                                             <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
1175                                           </taxonomy>\r
1176                                         </clade>\r
1177                                       </clade>\r
1178                                       <clade>\r
1179                                         <taxonomy>\r
1180                                           <id provider="uniprot">7955</id>\r
1181                                           <code>DANRE</code>\r
1182                                           <scientific_name>Danio rerio</scientific_name>\r
1183                                           <common_name>Zebrafish</common_name>\r
1184                                           <synonym>Brachydanio rerio</synonym>\r
1185                                           <rank>species</rank>\r
1186                                           <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>\r
1187                                         </taxonomy>\r
1188                                       </clade>\r
1189                                     </clade>\r
1190                                   </clade>\r
1191                                   <clade>\r
1192                                     <taxonomy>\r
1193                                       <id provider="uniprot">7868</id>\r
1194                                       <code>CALMI</code>\r
1195                                       <scientific_name>Callorhynchus milii</scientific_name>\r
1196                                       <common_name>Australian ghost shark</common_name>\r
1197                                       <synonym>Australian ghost shark</synonym>\r
1198                                       <rank>species</rank>\r
1199                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1200                                     </taxonomy>\r
1201                                   </clade>\r
1202                                 </clade>\r
1203                                 <clade>\r
1204                                   <taxonomy>\r
1205                                     <id provider="uniprot">7757</id>\r
1206                                     <code>PETMA</code>\r
1207                                     <scientific_name>Petromyzon marinus</scientific_name>\r
1208                                     <common_name>Sea lamprey</common_name>\r
1209                                     <rank>species</rank>\r
1210                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1211                                   </taxonomy>\r
1212                                 </clade>\r
1213                               </clade>\r
1214                               <clade>\r
1215                                 <name>Urochordata</name>\r
1216                                 <taxonomy>\r
1217                                   <id provider="uniprot">7712</id>\r
1218                                   <scientific_name>Urochordata</scientific_name>\r
1219                                   <rank>subphylum</rank>\r
1220                                 </taxonomy>\r
1221                                 <clade>\r
1222                                   <taxonomy>\r
1223                                     <id provider="uniprot">7718</id>\r
1224                                     <scientific_name>Ciona</scientific_name>\r
1225                                     <rank>genus</rank>\r
1226                                   </taxonomy>\r
1227                                   <clade>\r
1228                                     <taxonomy>\r
1229                                       <id provider="uniprot">7719</id>\r
1230                                       <code>CIOIN</code>\r
1231                                       <scientific_name>Ciona intestinalis</scientific_name>\r
1232                                       <common_name>Transparent sea squirt</common_name>\r
1233                                       <synonym>Ascidia intestinalis</synonym>\r
1234                                       <rank>species</rank>\r
1235                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1236                                     </taxonomy>\r
1237                                   </clade>\r
1238                                   <clade>\r
1239                                     <taxonomy>\r
1240                                       <id provider="uniprot">51511</id>\r
1241                                       <code>CIOSA</code>\r
1242                                       <scientific_name>Ciona savignyi</scientific_name>\r
1243                                       <common_name>Pacific transparent sea squirt</common_name>\r
1244                                       <rank>species</rank>\r
1245                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1246                                     </taxonomy>\r
1247                                   </clade>\r
1248                                 </clade>\r
1249                                 <clade>\r
1250                                   <taxonomy>\r
1251                                     <id provider="ncbi">34765</id>\r
1252                                     <code>OIKDI</code>\r
1253                                     <scientific_name>Oikopleura dioica</scientific_name>\r
1254                                     <common_name>Tunicate</common_name>\r
1255                                     <rank>species</rank>\r
1256                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1257                                   </taxonomy>\r
1258                                 </clade>\r
1259                               </clade>\r
1260                             </clade>\r
1261                             <clade>\r
1262                               <taxonomy>\r
1263                                 <id provider="uniprot">7739</id>\r
1264                                 <code>BRAFL</code>\r
1265                                 <scientific_name>Branchiostoma floridae</scientific_name>\r
1266                                 <common_name>Florida lancelet</common_name>\r
1267                                 <synonym>Amphioxus</synonym>\r
1268                                 <rank>species</rank>\r
1269                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>\r
1270                               </taxonomy>\r
1271                             </clade>\r
1272                           </clade>\r
1273                           <clade>\r
1274                             <name>Hemichordata &amp; Echinodermata</name>\r
1275                             <taxonomy>\r
1276                             </taxonomy>\r
1277                             <clade>\r
1278                               <taxonomy>\r
1279                                 <id provider="uniprot">7586</id>\r
1280                                 <scientific_name>Echinodermata</scientific_name>\r
1281                                 <rank>phylum</rank>\r
1282                               </taxonomy>\r
1283                               <clade>\r
1284                                 <taxonomy>\r
1285                                   <id provider="uniprot">133551</id>\r
1286                                   <scientific_name>Eleutherozoa</scientific_name>\r
1287                                   <rank>subphylum</rank>\r
1288                                 </taxonomy>\r
1289                                 <clade>\r
1290                                   <taxonomy>\r
1291                                     <id provider="uniprot">7674</id>\r
1292                                     <scientific_name>Echinacea</scientific_name>\r
1293                                     <rank>superorder</rank>\r
1294                                   </taxonomy>\r
1295                                   <clade>\r
1296                                     <taxonomy>\r
1297                                       <id provider="uniprot">7654</id>\r
1298                                       <code>LYTVA</code>\r
1299                                       <scientific_name>Lytechinus variegatus</scientific_name>\r
1300                                       <common_name>Green sea urchin</common_name>\r
1301                                       <synonym>Variegated urchin</synonym>\r
1302                                       <rank>species</rank>\r
1303                                       <uri>http://imagess3.enature.com/seashore/seashore_l/sc0090_1l.jpg</uri>\r
1304                                     </taxonomy>\r
1305                                   </clade>\r
1306                                   <clade>\r
1307                                     <taxonomy>\r
1308                                       <id provider="uniprot">7668</id>\r
1309                                       <code>STRPU</code>\r
1310                                       <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1311                                       <common_name>Purple sea urchin</common_name>\r
1312                                       <rank>species</rank>\r
1313                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1314                                     </taxonomy>\r
1315                                   </clade>\r
1316                                 </clade>\r
1317                                 <clade>\r
1318                                   <taxonomy>\r
1319                                     <id provider="uniprot">46514</id>\r
1320                                     <code>PATMI</code>\r
1321                                     <scientific_name>Patiria miniata</scientific_name>\r
1322                                     <common_name>Bat star</common_name>\r
1323                                     <synonym>Asterina miniata</synonym>\r
1324                                     <rank>species</rank>\r
1325                                     <uri>http://calphotos.berkeley.edu/imgs/256x384/9092_3191/3549/0105.jpeg</uri>\r
1326                                   </taxonomy>\r
1327                                 </clade>\r
1328                               </clade>\r
1329                               <clade>\r
1330                                 <taxonomy>\r
1331                                   <id provider="uniprot">73431</id>\r
1332                                   <scientific_name>Florometra serratissima</scientific_name>\r
1333                                   <common_name>common feather star</common_name>\r
1334                                   <rank>species</rank>\r
1335                                   <uri>http://www.alaska-in-pictures.com/data/media/1/feather-star-pattern_6081.jpg</uri>\r
1336                                 </taxonomy>\r
1337                               </clade>\r
1338                             </clade>\r
1339                             <clade>\r
1340                               <taxonomy>\r
1341                                 <id provider="uniprot">10224</id>\r
1342                                 <code>SACKO</code>\r
1343                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1344                                 <authority>Agassiz, 1873</authority>\r
1345                                 <common_name>Acorn worm</common_name>\r
1346                                 <rank>species</rank>\r
1347                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>\r
1348                               </taxonomy>\r
1349                             </clade>\r
1350                           </clade>\r
1351                         </clade>\r
1352                         <clade>\r
1353                           <taxonomy>\r
1354                             <id provider="uniprot">33317</id>\r
1355                             <scientific_name>Protostomia</scientific_name>\r
1356                           </taxonomy>\r
1357                           <clade>\r
1358                             <taxonomy>\r
1359                               <id provider="uniprot">1206794</id>\r
1360                               <scientific_name>Ecdysozoa</scientific_name>\r
1361                             </taxonomy>\r
1362                             <reference doi="10.1098/rstb.2007.2243">\r
1363                               <desc>The evolution of the Ecdysozoa</desc>\r
1364                             </reference>\r
1365                             <clade>\r
1366                               <taxonomy>\r
1367                                 <id provider="uniprot">88770</id>\r
1368                                 <scientific_name>Panarthropoda</scientific_name>\r
1369                               </taxonomy>\r
1370                               <clade>\r
1371                                 <name>Onychophora &amp; Arthropoda</name>\r
1372                                 <reference doi="10.1073/pnas.1105499108">\r
1373                                   <desc>MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda</desc>\r
1374                                 </reference>\r
1375                                 <clade>\r
1376                                   <taxonomy>\r
1377                                     <id provider="uniprot">6656</id>\r
1378                                     <scientific_name>Arthropoda</scientific_name>\r
1379                                     <rank>phylum</rank>\r
1380                                   </taxonomy>\r
1381                                   <reference doi="10.1098/rspb.2010.0590">\r
1382                                     <desc>A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata</desc>\r
1383                                   </reference>\r
1384                                   <clade>\r
1385                                     <taxonomy>\r
1386                                       <id provider="uniprot">197563</id>\r
1387                                       <scientific_name>Mandibulata</scientific_name>\r
1388                                     </taxonomy>\r
1389                                     <reference doi="doi:10.1038/ncomms3485">\r
1390                                       <desc>Arthropod fossil data increase congruence of morphological and molecular phylogenies</desc>\r
1391                                     </reference>\r
1392                                     <reference>\r
1393                                     </reference>\r
1394                                     <clade>\r
1395                                       <taxonomy>\r
1396                                         <id provider="uniprot">197562</id>\r
1397                                         <scientific_name>Pancrustacea</scientific_name>\r
1398                                       </taxonomy>\r
1399                                       <clade>\r
1400                                         <taxonomy>\r
1401                                           <id provider="uniprot">6960</id>\r
1402                                           <scientific_name>Hexapoda</scientific_name>\r
1403                                           <rank>superclass</rank>\r
1404                                         </taxonomy>\r
1405                                         <clade>\r
1406                                           <taxonomy>\r
1407                                             <id provider="uniprot">50557</id>\r
1408                                             <scientific_name>Insecta</scientific_name>\r
1409                                             <common_name>true insects</common_name>\r
1410                                             <rank>class</rank>\r
1411                                           </taxonomy>\r
1412                                           <clade>\r
1413                                             <taxonomy>\r
1414                                               <id provider="uniprot">33340</id>\r
1415                                               <scientific_name>Neoptera</scientific_name>\r
1416                                               <rank>subclass</rank>\r
1417                                             </taxonomy>\r
1418                                             <clade>\r
1419                                               <taxonomy>\r
1420                                                 <id provider="uniprot">33392</id>\r
1421                                                 <scientific_name>Endopterygota</scientific_name>\r
1422                                                 <rank>infraclass</rank>\r
1423                                               </taxonomy>\r
1424                                               <clade>\r
1425                                                 <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>\r
1426                                                 <clade>\r
1427                                                   <name>Lepidoptera &amp; Diptera</name>\r
1428                                                   <clade>\r
1429                                                     <taxonomy>\r
1430                                                       <id provider="uniprot">7147</id>\r
1431                                                       <scientific_name>Diptera</scientific_name>\r
1432                                                       <rank>order</rank>\r
1433                                                     </taxonomy>\r
1434                                                     <clade>\r
1435                                                       <taxonomy>\r
1436                                                         <id provider="uniprot">7215</id>\r
1437                                                         <scientific_name>Drosophila</scientific_name>\r
1438                                                         <common_name>fruit flies</common_name>\r
1439                                                         <rank>genus</rank>\r
1440                                                       </taxonomy>\r
1441                                                       <reference doi="10.1534/genetics.111.126540">\r
1442                                                         <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
1443                                                       </reference>\r
1444                                                       <clade>\r
1445                                                         <taxonomy>\r
1446                                                           <id provider="uniprot">32341</id>\r
1447                                                           <scientific_name>Sophophora</scientific_name>\r
1448                                                           <rank>subgenus</rank>\r
1449                                                         </taxonomy>\r
1450                                                         <clade>\r
1451                                                           <name>melanogaster &amp; pseudoobscura subgroups</name>\r
1452                                                           <clade>\r
1453                                                             <taxonomy>\r
1454                                                               <id provider="uniprot">32346</id>\r
1455                                                               <scientific_name>melanogaster group</scientific_name>\r
1456                                                             </taxonomy>\r
1457                                                             <clade>\r
1458                                                               <taxonomy>\r
1459                                                                 <id provider="uniprot">32351</id>\r
1460                                                                 <scientific_name>melanogaster subgroup</scientific_name>\r
1461                                                               </taxonomy>\r
1462                                                               <clade>\r
1463                                                                 <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
1464                                                                 <clade>\r
1465                                                                   <name>DROSE &amp; DROSI &amp; DROME</name>\r
1466                                                                   <clade>\r
1467                                                                     <name>DROSE &amp; DROSI</name>\r
1468                                                                     <clade>\r
1469                                                                       <taxonomy>\r
1470                                                                         <id provider="uniprot">7238</id>\r
1471                                                                         <code>DROSE</code>\r
1472                                                                         <scientific_name>Drosophila sechellia</scientific_name>\r
1473                                                                         <common_name>Fruit fly</common_name>\r
1474                                                                         <rank>species</rank>\r
1475                                                                       </taxonomy>\r
1476                                                                     </clade>\r
1477                                                                     <clade>\r
1478                                                                       <taxonomy>\r
1479                                                                         <id provider="uniprot">7240</id>\r
1480                                                                         <code>DROSI</code>\r
1481                                                                         <scientific_name>Drosophila simulans</scientific_name>\r
1482                                                                         <common_name>Fruit fly</common_name>\r
1483                                                                         <rank>species</rank>\r
1484                                                                       </taxonomy>\r
1485                                                                     </clade>\r
1486                                                                   </clade>\r
1487                                                                   <clade>\r
1488                                                                     <taxonomy>\r
1489                                                                       <id provider="uniprot">7227</id>\r
1490                                                                       <code>DROME</code>\r
1491                                                                       <scientific_name>Drosophila melanogaster</scientific_name>\r
1492                                                                       <common_name>Fruit fly</common_name>\r
1493                                                                       <rank>species</rank>\r
1494                                                                       <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
1495                                                                     </taxonomy>\r
1496                                                                   </clade>\r
1497                                                                 </clade>\r
1498                                                                 <clade>\r
1499                                                                   <taxonomy>\r
1500                                                                     <id provider="uniprot">7245</id>\r
1501                                                                     <code>DROYA</code>\r
1502                                                                     <scientific_name>Drosophila yakuba</scientific_name>\r
1503                                                                     <common_name>Fruit fly</common_name>\r
1504                                                                     <rank>species</rank>\r
1505                                                                   </taxonomy>\r
1506                                                                 </clade>\r
1507                                                               </clade>\r
1508                                                               <clade>\r
1509                                                                 <taxonomy>\r
1510                                                                   <id provider="uniprot">7220</id>\r
1511                                                                   <code>DROER</code>\r
1512                                                                   <scientific_name>Drosophila erecta</scientific_name>\r
1513                                                                   <common_name>Fruit fly</common_name>\r
1514                                                                   <rank>species</rank>\r
1515                                                                 </taxonomy>\r
1516                                                               </clade>\r
1517                                                             </clade>\r
1518                                                             <clade>\r
1519                                                               <taxonomy>\r
1520                                                                 <id provider="uniprot">7217</id>\r
1521                                                                 <code>DROAN</code>\r
1522                                                                 <scientific_name>Drosophila ananassae</scientific_name>\r
1523                                                                 <common_name>Fruit fly</common_name>\r
1524                                                                 <rank>species</rank>\r
1525                                                               </taxonomy>\r
1526                                                             </clade>\r
1527                                                           </clade>\r
1528                                                           <clade>\r
1529                                                             <taxonomy>\r
1530                                                               <id provider="uniprot">32358</id>\r
1531                                                               <scientific_name>pseudoobscura subgroup</scientific_name>\r
1532                                                             </taxonomy>\r
1533                                                             <clade>\r
1534                                                               <taxonomy>\r
1535                                                                 <id provider="uniprot">7234</id>\r
1536                                                                 <code>DROPE</code>\r
1537                                                                 <scientific_name>Drosophila persimilis</scientific_name>\r
1538                                                                 <common_name>Fruit fly</common_name>\r
1539                                                                 <rank>species</rank>\r
1540                                                               </taxonomy>\r
1541                                                             </clade>\r
1542                                                             <clade>\r
1543                                                               <taxonomy>\r
1544                                                                 <id provider="uniprot">46245</id>\r
1545                                                                 <code>DROPS</code>\r
1546                                                                 <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1547                                                                 <common_name>Fruit fly</common_name>\r
1548                                                                 <rank>subspecies</rank>\r
1549                                                                 <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
1550                                                               </taxonomy>\r
1551                                                             </clade>\r
1552                                                           </clade>\r
1553                                                         </clade>\r
1554                                                         <clade>\r
1555                                                           <taxonomy>\r
1556                                                             <id provider="uniprot">7260</id>\r
1557                                                             <code>DROWI</code>\r
1558                                                             <scientific_name>Drosophila willistoni</scientific_name>\r
1559                                                             <common_name>Fruit fly</common_name>\r
1560                                                             <rank>species</rank>\r
1561                                                           </taxonomy>\r
1562                                                         </clade>\r
1563                                                       </clade>\r
1564                                                       <clade>\r
1565                                                         <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
1566                                                         <clade>\r
1567                                                           <name>Drosophila subgenus</name>\r
1568                                                           <clade>\r
1569                                                             <taxonomy>\r
1570                                                               <id provider="uniprot">7230</id>\r
1571                                                               <code>DROMO</code>\r
1572                                                               <scientific_name>Drosophila mojavensis</scientific_name>\r
1573                                                               <common_name>Fruit fly</common_name>\r
1574                                                               <rank>species</rank>\r
1575                                                             </taxonomy>\r
1576                                                           </clade>\r
1577                                                           <clade>\r
1578                                                             <taxonomy>\r
1579                                                               <id provider="uniprot">7244</id>\r
1580                                                               <code>DROVI</code>\r
1581                                                               <scientific_name>Drosophila virilis</scientific_name>\r
1582                                                               <common_name>Fruit fly</common_name>\r
1583                                                               <rank>species</rank>\r
1584                                                             </taxonomy>\r
1585                                                           </clade>\r
1586                                                         </clade>\r
1587                                                         <clade>\r
1588                                                           <taxonomy>\r
1589                                                             <id provider="uniprot">7222</id>\r
1590                                                             <code>DROGR</code>\r
1591                                                             <scientific_name>Drosophila grimshawi</scientific_name>\r
1592                                                             <common_name>Fruit fly</common_name>\r
1593                                                             <synonym>Idiomyia grimshawi</synonym>\r
1594                                                             <rank>species</rank>\r
1595                                                             <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
1596                                                           </taxonomy>\r
1597                                                         </clade>\r
1598                                                       </clade>\r
1599                                                     </clade>\r
1600                                                     <clade>\r
1601                                                       <taxonomy>\r
1602                                                         <id provider="uniprot">7157</id>\r
1603                                                         <scientific_name>Culicidae</scientific_name>\r
1604                                                         <common_name>mosquitos</common_name>\r
1605                                                         <rank>family</rank>\r
1606                                                       </taxonomy>\r
1607                                                       <clade>\r
1608                                                         <taxonomy>\r
1609                                                           <id provider="uniprot">7159</id>\r
1610                                                           <code>AEDAE</code>\r
1611                                                           <scientific_name>Aedes aegypti</scientific_name>\r
1612                                                           <common_name>Yellowfever mosquito</common_name>\r
1613                                                           <synonym>Culex aegypti</synonym>\r
1614                                                           <rank>species</rank>\r
1615                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1616                                                         </taxonomy>\r
1617                                                       </clade>\r
1618                                                       <clade>\r
1619                                                         <taxonomy>\r
1620                                                           <id provider="uniprot">7165</id>\r
1621                                                           <code>ANOGA</code>\r
1622                                                           <scientific_name>Anopheles gambiae</scientific_name>\r
1623                                                           <common_name>African malaria mosquito</common_name>\r
1624                                                           <rank>species</rank>\r
1625                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1626                                                         </taxonomy>\r
1627                                                       </clade>\r
1628                                                       <clade>\r
1629                                                         <taxonomy>\r
1630                                                           <id provider="uniprot">7175</id>\r
1631                                                           <code>CULPI</code>\r
1632                                                           <scientific_name>Culex pipiens</scientific_name>\r
1633                                                           <common_name>House mosquito</common_name>\r
1634                                                           <rank>species</rank>\r
1635                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg</uri>\r
1636                                                         </taxonomy>\r
1637                                                       </clade>\r
1638                                                     </clade>\r
1639                                                   </clade>\r
1640                                                   <clade>\r
1641                                                     <taxonomy>\r
1642                                                       <id provider="uniprot">104431</id>\r
1643                                                       <scientific_name>Obtectomera</scientific_name>\r
1644                                                     </taxonomy>\r
1645                                                     <clade>\r
1646                                                       <taxonomy>\r
1647                                                         <id provider="uniprot">7091</id>\r
1648                                                         <code>BOMMO</code>\r
1649                                                         <scientific_name>Bombyx mori</scientific_name>\r
1650                                                         <common_name>Silk moth</common_name>\r
1651                                                         <rank>species</rank>\r
1652                                                         <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>\r
1653                                                       </taxonomy>\r
1654                                                     </clade>\r
1655                                                     <clade>\r
1656                                                       <taxonomy>\r
1657                                                         <id provider="uniprot">13037</id>\r
1658                                                         <code>DANPL</code>\r
1659                                                         <scientific_name>Danaus plexippus</scientific_name>\r
1660                                                         <common_name>Monarch butterfly</common_name>\r
1661                                                         <rank>species</rank>\r
1662                                                         <uri>http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg</uri>\r
1663                                                         <uri>http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg</uri>\r
1664                                                       </taxonomy>\r
1665                                                     </clade>\r
1666                                                   </clade>\r
1667                                                 </clade>\r
1668                                                 <clade>\r
1669                                                   <taxonomy>\r
1670                                                     <id provider="uniprot">7400</id>\r
1671                                                     <scientific_name>Apocrita</scientific_name>\r
1672                                                     <common_name>wasps, ants and bees</common_name>\r
1673                                                   </taxonomy>\r
1674                                                   <clade>\r
1675                                                     <taxonomy>\r
1676                                                       <id provider="uniprot">7434</id>\r
1677                                                       <scientific_name>Aculeata</scientific_name>\r
1678                                                       <rank>suborder</rank>\r
1679                                                     </taxonomy>\r
1680                                                     <clade>\r
1681                                                       <taxonomy>\r
1682                                                         <id provider="uniprot">36668</id>\r
1683                                                         <scientific_name>Formicidae</scientific_name>\r
1684                                                         <common_name>ants</common_name>\r
1685                                                         <rank>family</rank>\r
1686                                                       </taxonomy>\r
1687                                                       <clade>\r
1688                                                         <taxonomy>\r
1689                                                           <id provider="uniprot">143999</id>\r
1690                                                           <scientific_name>Attini</scientific_name>\r
1691                                                           <rank>tribe</rank>\r
1692                                                         </taxonomy>\r
1693                                                         <clade>\r
1694                                                           <taxonomy>\r
1695                                                             <id provider="uniprot">12957</id>\r
1696                                                             <code>ATTCE</code>\r
1697                                                             <scientific_name>Atta cephalotes</scientific_name>\r
1698                                                             <authority>Linnaeus, 1758</authority>\r
1699                                                             <common_name>Leafcutter ant</common_name>\r
1700                                                             <rank>species</rank>\r
1701                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
1702                                                           </taxonomy>\r
1703                                                         </clade>\r
1704                                                         <clade>\r
1705                                                           <taxonomy>\r
1706                                                             <id provider="uniprot">103372</id>\r
1707                                                             <code>ACREC</code>\r
1708                                                             <scientific_name>Acromyrmex echinatior</scientific_name>\r
1709                                                             <authority>Forel, 1899</authority>\r
1710                                                             <common_name>Panamanian leafcutter ant</common_name>\r
1711                                                             <synonym>Acromyrmex octospinosus echinatior</synonym>\r
1712                                                             <rank>species</rank>\r
1713                                                             <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>\r
1714                                                           </taxonomy>\r
1715                                                         </clade>\r
1716                                                       </clade>\r
1717                                                       <clade>\r
1718                                                         <taxonomy>\r
1719                                                           <id provider="uniprot">104421</id>\r
1720                                                           <code>CAMFO</code>\r
1721                                                           <scientific_name>Camponotus floridanus</scientific_name>\r
1722                                                           <authority>Buckley, 1866</authority>\r
1723                                                           <common_name>Florida carpenter ant</common_name>\r
1724                                                           <rank>species</rank>\r
1725                                                           <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>\r
1726                                                         </taxonomy>\r
1727                                                       </clade>\r
1728                                                     </clade>\r
1729                                                     <clade>\r
1730                                                       <taxonomy>\r
1731                                                         <id provider="uniprot">7460</id>\r
1732                                                         <code>APIME</code>\r
1733                                                         <scientific_name>Apis mellifera</scientific_name>\r
1734                                                         <common_name>Honeybee</common_name>\r
1735                                                         <rank>species</rank>\r
1736                                                         <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
1737                                                       </taxonomy>\r
1738                                                     </clade>\r
1739                                                   </clade>\r
1740                                                   <clade>\r
1741                                                     <taxonomy>\r
1742                                                       <id provider="uniprot">7425</id>\r
1743                                                       <code>NASVI</code>\r
1744                                                       <scientific_name>Nasonia vitripennis</scientific_name>\r
1745                                                       <common_name>Parasitic wasp</common_name>\r
1746                                                       <rank>species</rank>\r
1747                                                       <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
1748                                                     </taxonomy>\r
1749                                                   </clade>\r
1750                                                 </clade>\r
1751                                               </clade>\r
1752                                               <clade>\r
1753                                                 <taxonomy>\r
1754                                                   <id provider="uniprot">7070</id>\r
1755                                                   <code>TRICA</code>\r
1756                                                   <scientific_name>Tribolium castaneum</scientific_name>\r
1757                                                   <common_name>Red flour beetle</common_name>\r
1758                                                   <rank>species</rank>\r
1759                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>\r
1760                                                 </taxonomy>\r
1761                                               </clade>\r
1762                                             </clade>\r
1763                                             <clade>\r
1764                                               <taxonomy>\r
1765                                                 <id provider="uniprot">33342</id>\r
1766                                                 <scientific_name>Paraneoptera</scientific_name>\r
1767                                                 <rank>infraclass</rank>\r
1768                                               </taxonomy>\r
1769                                               <clade>\r
1770                                                 <taxonomy>\r
1771                                                   <id provider="uniprot">7524</id>\r
1772                                                   <scientific_name>Hemiptera</scientific_name>\r
1773                                                   <rank>order</rank>\r
1774                                                 </taxonomy>\r
1775                                                 <clade>\r
1776                                                   <taxonomy>\r
1777                                                     <id provider="uniprot">7029</id>\r
1778                                                     <code>ACYPI</code>\r
1779                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>\r
1780                                                     <common_name>Pea aphid</common_name>\r
1781                                                     <rank>species</rank>\r
1782                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
1783                                                   </taxonomy>\r
1784                                                 </clade>\r
1785                                                 <clade>\r
1786                                                   <taxonomy>\r
1787                                                     <id provider="uniprot">13249</id>\r
1788                                                     <code>RHOPR</code>\r
1789                                                     <scientific_name>Rhodnius prolixus</scientific_name>\r
1790                                                     <common_name>Triatomid bug</common_name>\r
1791                                                     <rank>species</rank>\r
1792                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
1793                                                   </taxonomy>\r
1794                                                 </clade>\r
1795                                               </clade>\r
1796                                               <clade>\r
1797                                                 <taxonomy>\r
1798                                                   <id provider="uniprot">121224</id>\r
1799                                                   <code>PEDHC</code>\r
1800                                                   <scientific_name>Pediculus humanus subsp. corporis</scientific_name>\r
1801                                                   <common_name>Body louse</common_name>\r
1802                                                   <rank>subspecies</rank>\r
1803                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>\r
1804                                                 </taxonomy>\r
1805                                               </clade>\r
1806                                             </clade>\r
1807                                           </clade>\r
1808                                           <clade>\r
1809                                             <taxonomy>\r
1810                                               <id provider="uniprot">568273</id>\r
1811                                               <scientific_name>Machilis germanica</scientific_name>\r
1812                                               <rank>species</rank>\r
1813                                               <uri>http://www.naturefg.com/images/c-animals/machilis.jpg</uri>\r
1814                                             </taxonomy>\r
1815                                           </clade>\r
1816                                         </clade>\r
1817                                         <clade>\r
1818                                           <taxonomy>\r
1819                                             <id provider="uniprot">383857</id>\r
1820                                             <scientific_name>Campodea fragilis</scientific_name>\r
1821                                             <rank>species</rank>\r
1822                                             <uri>http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg</uri>\r
1823                                           </taxonomy>\r
1824                                         </clade>\r
1825                                       </clade>\r
1826                                       <clade>\r
1827                                         <taxonomy>\r
1828                                           <id provider="uniprot">6657</id>\r
1829                                           <scientific_name>Crustacea</scientific_name>\r
1830                                           <rank>subphylum</rank>\r
1831                                         </taxonomy>\r
1832                                         <clade>\r
1833                                           <taxonomy>\r
1834                                             <id provider="uniprot">6658</id>\r
1835                                             <scientific_name>Branchiopoda</scientific_name>\r
1836                                             <rank>class</rank>\r
1837                                           </taxonomy>\r
1838                                           <clade>\r
1839                                             <taxonomy>\r
1840                                               <id provider="uniprot">6661</id>\r
1841                                               <code>ARTSF</code>\r
1842                                               <scientific_name>Artemia franciscana</scientific_name>\r
1843                                               <common_name>Brine shrimp</common_name>\r
1844                                               <synonym>Artemia sanfranciscana</synonym>\r
1845                                               <rank>species</rank>\r
1846                                               <uri>http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg</uri>\r
1847                                             </taxonomy>\r
1848                                           </clade>\r
1849                                           <clade>\r
1850                                             <taxonomy>\r
1851                                               <id provider="uniprot">6669</id>\r
1852                                               <code>DAPPU</code>\r
1853                                               <scientific_name>Daphnia pulex</scientific_name>\r
1854                                               <common_name>Water flea</common_name>\r
1855                                               <rank>species</rank>\r
1856                                               <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
1857                                             </taxonomy>\r
1858                                           </clade>\r
1859                                         </clade>\r
1860                                         <clade>\r
1861                                           <taxonomy>\r
1862                                             <id provider="uniprot">6706</id>\r
1863                                             <code>HOMAM</code>\r
1864                                             <scientific_name>Homarus americanus</scientific_name>\r
1865                                             <common_name>American lobster</common_name>\r
1866                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg</uri>\r
1867                                           </taxonomy>\r
1868                                         </clade>\r
1869                                       </clade>\r
1870                                     </clade>\r
1871                                     <clade>\r
1872                                       <taxonomy>\r
1873                                         <id provider="uniprot">61985</id>\r
1874                                         <scientific_name>Myriapoda</scientific_name>\r
1875                                         <rank>subphylum</rank>\r
1876                                       </taxonomy>\r
1877                                       <clade>\r
1878                                         <taxonomy>\r
1879                                           <id provider="uniprot">7553</id>\r
1880                                           <scientific_name>Diplopoda</scientific_name>\r
1881                                           <common_name>millipedes</common_name>\r
1882                                           <rank>class</rank>\r
1883                                         </taxonomy>\r
1884                                         <clade>\r
1885                                           <taxonomy>\r
1886                                             <id provider="uniprot">118561</id>\r
1887                                             <scientific_name>Helminthomorpha</scientific_name>\r
1888                                             <rank>subclass</rank>\r
1889                                           </taxonomy>\r
1890                                           <clade>\r
1891                                             <taxonomy>\r
1892                                               <id provider="uniprot">364406</id>\r
1893                                               <code>ANTGC</code>\r
1894                                               <scientific_name>Antrokoreana gracilipes</scientific_name>\r
1895                                               <common_name>Troglobite millipede</common_name>\r
1896                                               <rank>species</rank>\r
1897                                             </taxonomy>\r
1898                                           </clade>\r
1899                                           <clade>\r
1900                                             <taxonomy>\r
1901                                               <id provider="uniprot">174156</id>\r
1902                                               <code>NARAN</code>\r
1903                                               <scientific_name>Narceus annularis</scientific_name>\r
1904                                               <common_name>Millipede</common_name>\r
1905                                               <rank>species</rank>\r
1906                                               <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
1907                                             </taxonomy>\r
1908                                           </clade>\r
1909                                         </clade>\r
1910                                         <clade>\r
1911                                           <taxonomy>\r
1912                                             <id provider="uniprot">52428</id>\r
1913                                             <scientific_name>Polyxenus lagurus</scientific_name>\r
1914                                             <common_name>bristly millipede</common_name>\r
1915                                             <rank>species</rank>\r
1916                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
1917                                           </taxonomy>\r
1918                                         </clade>\r
1919                                       </clade>\r
1920                                       <clade>\r
1921                                         <taxonomy>\r
1922                                           <id provider="uniprot">7540</id>\r
1923                                           <scientific_name>Chilopoda</scientific_name>\r
1924                                           <common_name>centipedes</common_name>\r
1925                                           <rank>class</rank>\r
1926                                         </taxonomy>\r
1927                                         <clade>\r
1928                                           <taxonomy>\r
1929                                             <id provider="uniprot">29022</id>\r
1930                                             <code>SCUCO</code>\r
1931                                             <scientific_name>Scutigera coleoptrata</scientific_name>\r
1932                                             <common_name>House centipede</common_name>\r
1933                                             <rank>species</rank>\r
1934                                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
1935                                           </taxonomy>\r
1936                                         </clade>\r
1937                                         <clade>\r
1938                                           <taxonomy>\r
1939                                             <id provider="uniprot">126957</id>\r
1940                                             <code>STRMM</code>\r
1941                                             <scientific_name>Strigamia maritima</scientific_name>\r
1942                                             <common_name>European centipede</common_name>\r
1943                                             <synonym>Geophilus maritimus</synonym>\r
1944                                             <rank>species</rank>\r
1945                                             <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
1946                                           </taxonomy>\r
1947                                         </clade>\r
1948                                       </clade>\r
1949                                     </clade>\r
1950                                   </clade>\r
1951                                   <clade>\r
1952                                     <taxonomy>\r
1953                                       <id provider="uniprot">6843</id>\r
1954                                       <scientific_name>Chelicerata</scientific_name>\r
1955                                       <rank>subphylum</rank>\r
1956                                     </taxonomy>\r
1957                                     <reference doi="10.1016/j.ympev.2009.08.014">\r
1958                                       <desc>A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)</desc>\r
1959                                     </reference>\r
1960                                     <reference>\r
1961                                     </reference>\r
1962                                     <reference>\r
1963                                     </reference>\r
1964                                     <reference>\r
1965                                     </reference>\r
1966                                     <clade>\r
1967                                       <name>Arachnida &amp; Merostomata</name>\r
1968                                       <taxonomy>\r
1969                                         <id>Sea spider</id>\r
1970                                       </taxonomy>\r
1971                                       <clade>\r
1972                                         <taxonomy>\r
1973                                           <id provider="uniprot">6854</id>\r
1974                                           <scientific_name>Arachnida</scientific_name>\r
1975                                           <rank>class</rank>\r
1976                                         </taxonomy>\r
1977                                         <clade>\r
1978                                           <taxonomy>\r
1979                                             <id provider="uniprot">6933</id>\r
1980                                             <scientific_name>Acari</scientific_name>\r
1981                                             <common_name>mites &amp; ticks</common_name>\r
1982                                             <rank>subclass</rank>\r
1983                                           </taxonomy>\r
1984                                           <clade>\r
1985                                             <taxonomy>\r
1986                                               <id provider="uniprot">6945</id>\r
1987                                               <code>IXOSC</code>\r
1988                                               <scientific_name>Ixodes scapularis</scientific_name>\r
1989                                               <common_name>Black-legged tick</common_name>\r
1990                                               <synonym>Deer tick</synonym>\r
1991                                               <rank>species</rank>\r
1992                                               <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
1993                                             </taxonomy>\r
1994                                           </clade>\r
1995                                           <clade>\r
1996                                             <taxonomy>\r
1997                                               <id provider="uniprot">32264</id>\r
1998                                               <code>TETUR</code>\r
1999                                               <scientific_name>Tetranychus urticae</scientific_name>\r
2000                                               <common_name>Two-spotted spider mite</common_name>\r
2001                                               <rank>species</rank>\r
2002                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg</uri>\r
2003                                             </taxonomy>\r
2004                                           </clade>\r
2005                                         </clade>\r
2006                                         <clade>\r
2007                                           <taxonomy>\r
2008                                             <id provider="uniprot">34649</id>\r
2009                                             <code>MESMA</code>\r
2010                                             <scientific_name>Mesobuthus martensii</scientific_name>\r
2011                                             <authority>Karsch, 1879</authority>\r
2012                                             <common_name>Manchurian scorpion</common_name>\r
2013                                             <synonym>Buthus martensi</synonym>\r
2014                                             <synonym>Buthus martensii</synonym>\r
2015                                             <rank>species</rank>\r
2016                                             <uri>http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg</uri>\r
2017                                           </taxonomy>\r
2018                                         </clade>\r
2019                                       </clade>\r
2020                                       <clade>\r
2021                                         <taxonomy>\r
2022                                           <id provider="uniprot">6850</id>\r
2023                                           <code>LIMPO</code>\r
2024                                           <scientific_name>Limulus polyphemus</scientific_name>\r
2025                                           <common_name>Atlantic horseshoe crab</common_name>\r
2026                                           <rank>species</rank>\r
2027                                           <uri>http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG</uri>\r
2028                                         </taxonomy>\r
2029                                       </clade>\r
2030                                     </clade>\r
2031                                     <clade>\r
2032                                       <taxonomy>\r
2033                                         <id provider="uniprot">258330</id>\r
2034                                         <scientific_name>Ammothea hilgendorfi</scientific_name>\r
2035                                         <rank>species</rank>\r
2036                                         <uri>http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg</uri>\r
2037                                       </taxonomy>\r
2038                                     </clade>\r
2039                                   </clade>\r
2040                                 </clade>\r
2041                                 <clade>\r
2042                                   <taxonomy>\r
2043                                     <id provider="uniprot">488523</id>\r
2044                                     <scientific_name>Euperipatoides kanangrensis</scientific_name>\r
2045                                     <authority>Reid, 1996</authority>\r
2046                                     <rank>species</rank>\r
2047                                     <uri>http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg</uri>\r
2048                                     <uri>http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg</uri>\r
2049                                   </taxonomy>\r
2050                                 </clade>\r
2051                               </clade>\r
2052                               <clade>\r
2053                                 <taxonomy>\r
2054                                   <id provider="uniprot">232323</id>\r
2055                                   <code>HYPDU</code>\r
2056                                   <scientific_name>Hypsibius dujardini</scientific_name>\r
2057                                   <common_name>Water bear</common_name>\r
2058                                   <synonym>Macrobiotus dujardini</synonym>\r
2059                                   <rank>species</rank>\r
2060                                   <uri>http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg</uri>\r
2061                                 </taxonomy>\r
2062                               </clade>\r
2063                             </clade>\r
2064                             <clade>\r
2065                               <taxonomy>\r
2066                                 <id provider="uniprot">6231</id>\r
2067                                 <scientific_name>Nematoda</scientific_name>\r
2068                                 <common_name>roundworms</common_name>\r
2069                                 <rank>phylum</rank>\r
2070                               </taxonomy>\r
2071                               <clade>\r
2072                                 <taxonomy>\r
2073                                   <id provider="uniprot">119089</id>\r
2074                                   <scientific_name>Chromadorea</scientific_name>\r
2075                                   <rank>class</rank>\r
2076                                 </taxonomy>\r
2077                                 <reference doi="10.1038/32160">\r
2078                                 </reference>\r
2079                                 <clade>\r
2080                                   <name>nematode Clade V</name>\r
2081                                   <clade>\r
2082                                     <taxonomy>\r
2083                                       <id provider="uniprot">6237</id>\r
2084                                       <scientific_name>Caenorhabditis</scientific_name>\r
2085                                       <rank>genus</rank>\r
2086                                     </taxonomy>\r
2087                                     <reference doi="10.1073/pnas.0403094101">\r
2088                                       <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>\r
2089                                     </reference>\r
2090                                     <clade>\r
2091                                       <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>\r
2092                                       <clade>\r
2093                                         <name>CAEBR &amp; CAERE &amp; CAEBE</name>\r
2094                                         <clade>\r
2095                                           <name>CAEBR &amp; CAERE</name>\r
2096                                           <clade>\r
2097                                             <taxonomy>\r
2098                                               <id provider="uniprot">6238</id>\r
2099                                               <code>CAEBR</code>\r
2100                                               <scientific_name>Caenorhabditis briggsae</scientific_name>\r
2101                                               <rank>species</rank>\r
2102                                               <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>\r
2103                                             </taxonomy>\r
2104                                           </clade>\r
2105                                           <clade>\r
2106                                             <taxonomy>\r
2107                                               <id provider="uniprot">31234</id>\r
2108                                               <code>CAERE</code>\r
2109                                               <scientific_name>Caenorhabditis remanei</scientific_name>\r
2110                                               <synonym>Caenorhabditis vulgaris</synonym>\r
2111                                               <rank>species</rank>\r
2112                                               <uri>http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg</uri>\r
2113                                             </taxonomy>\r
2114                                           </clade>\r
2115                                         </clade>\r
2116                                         <clade>\r
2117                                           <taxonomy>\r
2118                                             <id provider="uniprot">135651</id>\r
2119                                             <code>CAEBE</code>\r
2120                                             <scientific_name>Caenorhabditis brenneri</scientific_name>\r
2121                                             <common_name>Nematode worm</common_name>\r
2122                                             <synonym>Caenorhabditis CB5161</synonym>\r
2123                                             <rank>species</rank>\r
2124                                           </taxonomy>\r
2125                                         </clade>\r
2126                                       </clade>\r
2127                                       <clade>\r
2128                                         <taxonomy>\r
2129                                           <id provider="uniprot">6239</id>\r
2130                                           <code>CAEEL</code>\r
2131                                           <scientific_name>Caenorhabditis elegans</scientific_name>\r
2132                                           <rank>species</rank>\r
2133                                           <uri>http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif</uri>\r
2134                                         </taxonomy>\r
2135                                       </clade>\r
2136                                     </clade>\r
2137                                     <clade>\r
2138                                       <taxonomy>\r
2139                                         <id provider="uniprot">281687</id>\r
2140                                         <code>CAEJA</code>\r
2141                                         <scientific_name>Caenorhabditis japonica</scientific_name>\r
2142                                         <rank>species</rank>\r
2143                                       </taxonomy>\r
2144                                     </clade>\r
2145                                   </clade>\r
2146                                   <clade>\r
2147                                     <taxonomy>\r
2148                                       <id provider="uniprot">54126</id>\r
2149                                       <code>PRIPA</code>\r
2150                                       <scientific_name>Pristionchus pacificus</scientific_name>\r
2151                                       <common_name>Parasitic nematode</common_name>\r
2152                                       <rank>species</rank>\r
2153                                       <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>\r
2154                                     </taxonomy>\r
2155                                   </clade>\r
2156                                 </clade>\r
2157                                 <clade>\r
2158                                   <taxonomy>\r
2159                                     <id provider="uniprot">6296</id>\r
2160                                     <scientific_name>Onchocercidae</scientific_name>\r
2161                                     <rank>family</rank>\r
2162                                   </taxonomy>\r
2163                                   <clade>\r
2164                                     <taxonomy>\r
2165                                       <id provider="uniprot">6279</id>\r
2166                                       <code>BRUMA</code>\r
2167                                       <scientific_name>Brugia malayi</scientific_name>\r
2168                                       <common_name>Filarial nematode worm</common_name>\r
2169                                       <rank>species</rank>\r
2170                                       <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>\r
2171                                     </taxonomy>\r
2172                                   </clade>\r
2173                                   <clade>\r
2174                                     <taxonomy>\r
2175                                       <id provider="uniprot">6293</id>\r
2176                                       <code>WUCBA</code>\r
2177                                       <scientific_name>Wuchereria bancrofti</scientific_name>\r
2178                                       <rank>species</rank>\r
2179                                       <uri>http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG</uri>\r
2180                                     </taxonomy>\r
2181                                   </clade>\r
2182                                 </clade>\r
2183                               </clade>\r
2184                               <clade>\r
2185                                 <taxonomy>\r
2186                                   <id provider="uniprot">6334</id>\r
2187                                   <code>TRISP</code>\r
2188                                   <scientific_name>Trichinella spiralis</scientific_name>\r
2189                                   <common_name>Trichina worm</common_name>\r
2190                                   <rank>species</rank>\r
2191                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG</uri>\r
2192                                 </taxonomy>\r
2193                               </clade>\r
2194                             </clade>\r
2195                           </clade>\r
2196                           <clade>\r
2197                             <taxonomy>\r
2198                               <id provider="uniprot">1206795</id>\r
2199                               <scientific_name>Lophotrochozoa</scientific_name>\r
2200                             </taxonomy>\r
2201                             <clade>\r
2202                               <name>Annelida &amp; Mollusca</name>\r
2203                               <clade>\r
2204                                 <taxonomy>\r
2205                                   <id provider="uniprot">6447</id>\r
2206                                   <scientific_name>Mollusca</scientific_name>\r
2207                                   <rank>phylum</rank>\r
2208                                 </taxonomy>\r
2209                                 <clade>\r
2210                                   <taxonomy>\r
2211                                     <id provider="uniprot">6448</id>\r
2212                                     <scientific_name>Gastropoda</scientific_name>\r
2213                                     <rank>class</rank>\r
2214                                   </taxonomy>\r
2215                                   <clade>\r
2216                                     <taxonomy>\r
2217                                       <id provider="uniprot">6500</id>\r
2218                                       <code>APLCA</code>\r
2219                                       <scientific_name>Aplysia californica</scientific_name>\r
2220                                       <common_name>California sea hare</common_name>\r
2221                                       <rank>species</rank>\r
2222                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>\r
2223                                     </taxonomy>\r
2224                                   </clade>\r
2225                                   <clade>\r
2226                                     <taxonomy>\r
2227                                       <id provider="uniprot">225164</id>\r
2228                                       <code>LOTGI</code>\r
2229                                       <scientific_name>Lottia gigantea</scientific_name>\r
2230                                       <common_name>Owl limpet</common_name>\r
2231                                       <rank>species</rank>\r
2232                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>\r
2233                                     </taxonomy>\r
2234                                   </clade>\r
2235                                 </clade>\r
2236                                 <clade>\r
2237                                   <taxonomy>\r
2238                                     <id provider="uniprot">6545</id>\r
2239                                     <scientific_name>Pteriomorphia</scientific_name>\r
2240                                     <synonym>Pteriomorpha</synonym>\r
2241                                     <rank>subclass</rank>\r
2242                                   </taxonomy>\r
2243                                   <clade>\r
2244                                     <taxonomy>\r
2245                                       <id provider="uniprot">29159</id>\r
2246                                       <code>CRAGI</code>\r
2247                                       <scientific_name>Crassostrea gigas</scientific_name>\r
2248                                       <authority>Thunberg, 1793</authority>\r
2249                                       <common_name>Pacific oyster</common_name>\r
2250                                       <synonym>Crassotrea gigas</synonym>\r
2251                                       <synonym>Crassostrea angulata</synonym>\r
2252                                       <synonym>Ostrea gigas</synonym>\r
2253                                       <rank>species</rank>\r
2254                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>\r
2255                                     </taxonomy>\r
2256                                   </clade>\r
2257                                   <clade>\r
2258                                     <taxonomy>\r
2259                                       <id provider="uniprot">50426</id>\r
2260                                       <code>PINFU</code>\r
2261                                       <scientific_name>Pinctada fucata</scientific_name>\r
2262                                       <common_name>Pearl oyster</common_name>\r
2263                                       <rank>species</rank>\r
2264                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>\r
2265                                     </taxonomy>\r
2266                                   </clade>\r
2267                                 </clade>\r
2268                               </clade>\r
2269                               <clade>\r
2270                                 <taxonomy>\r
2271                                   <id provider="uniprot">6340</id>\r
2272                                   <scientific_name>Annelida</scientific_name>\r
2273                                   <rank>phylum</rank>\r
2274                                 </taxonomy>\r
2275                                 <clade>\r
2276                                   <taxonomy>\r
2277                                     <id provider="uniprot">283909</id>\r
2278                                     <code>CTEXX</code>\r
2279                                     <scientific_name>Capitella teleta</scientific_name>\r
2280                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>\r
2281                                     <synonym>Capitella sp. I</synonym>\r
2282                                     <rank>species</rank>\r
2283                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>\r
2284                                   </taxonomy>\r
2285                                 </clade>\r
2286                                 <clade>\r
2287                                   <taxonomy>\r
2288                                     <id provider="uniprot">6412</id>\r
2289                                     <code>HELRO</code>\r
2290                                     <scientific_name>Helobdella robusta</scientific_name>\r
2291                                     <common_name>Californian leech</common_name>\r
2292                                     <rank>species</rank>\r
2293                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>\r
2294                                   </taxonomy>\r
2295                                 </clade>\r
2296                               </clade>\r
2297                             </clade>\r
2298                             <clade>\r
2299                               <taxonomy>\r
2300                                 <id provider="uniprot">6157</id>\r
2301                                 <scientific_name>Platyhelminthes</scientific_name>\r
2302                                 <rank>phylum</rank>\r
2303                               </taxonomy>\r
2304                               <clade>\r
2305                                 <taxonomy>\r
2306                                   <scientific_name>Neodermata</scientific_name>\r
2307                                 </taxonomy>\r
2308                                 <clade>\r
2309                                   <taxonomy>\r
2310                                     <id provider="uniprot">6179</id>\r
2311                                     <scientific_name>Digenea</scientific_name>\r
2312                                     <common_name>flukes</common_name>\r
2313                                     <rank>subclass</rank>\r
2314                                   </taxonomy>\r
2315                                   <clade>\r
2316                                     <taxonomy>\r
2317                                       <id provider="uniprot">6183</id>\r
2318                                       <code>SCHMA</code>\r
2319                                       <scientific_name>Schistosoma mansoni</scientific_name>\r
2320                                       <common_name>Blood fluke</common_name>\r
2321                                       <rank>species</rank>\r
2322                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>\r
2323                                     </taxonomy>\r
2324                                   </clade>\r
2325                                   <clade>\r
2326                                     <taxonomy>\r
2327                                       <id provider="uniprot">79923</id>\r
2328                                       <code>CLOSI</code>\r
2329                                       <scientific_name>Clonorchis sinensi</scientific_name>\r
2330                                       <authority>Cobbold, 1875</authority>\r
2331                                       <common_name>Chinese liver fluke</common_name>\r
2332                                       <rank>species</rank>\r
2333                                       <uri>http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg</uri>\r
2334                                     </taxonomy>\r
2335                                   </clade>\r
2336                                 </clade>\r
2337                                 <clade>\r
2338                                   <taxonomy>\r
2339                                     <id provider="uniprot">6211</id>\r
2340                                     <code>ECHMU</code>\r
2341                                     <scientific_name>Echinococcus multilocularis</scientific_name>\r
2342                                     <rank>species</rank>\r
2343                                     <uri>http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg</uri>\r
2344                                   </taxonomy>\r
2345                                 </clade>\r
2346                               </clade>\r
2347                               <clade>\r
2348                                 <taxonomy>\r
2349                                   <id provider="uniprot">79327</id>\r
2350                                   <code>SCHMD</code>\r
2351                                   <scientific_name>Schmidtea mediterranea</scientific_name>\r
2352                                   <common_name>Freshwater planarian flatworm</common_name>\r
2353                                   <rank>species</rank>\r
2354                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>\r
2355                                 </taxonomy>\r
2356                               </clade>\r
2357                             </clade>\r
2358                           </clade>\r
2359                         </clade>\r
2360                       </clade>\r
2361                       <clade>\r
2362                         <name>Cnidaria</name>\r
2363                         <taxonomy>\r
2364                           <id provider="uniprot">6073</id>\r
2365                           <scientific_name>Cnidaria</scientific_name>\r
2366                           <rank>phylum</rank>\r
2367                         </taxonomy>\r
2368                         <clade>\r
2369                           <taxonomy>\r
2370                             <id provider="uniprot">6102</id>\r
2371                             <scientific_name>Hexacorallia</scientific_name>\r
2372                             <synonym>Ceriantipatharia</synonym>\r
2373                             <synonym>Zoantharia</synonym>\r
2374                             <rank>subclass</rank>\r
2375                           </taxonomy>\r
2376                           <clade>\r
2377                             <taxonomy>\r
2378                               <id provider="uniprot">70779</id>\r
2379                               <code>ACRDI</code>\r
2380                               <scientific_name>Acropora digitifera</scientific_name>\r
2381                               <common_name>Staghorn coral</common_name>\r
2382                               <rank>species</rank>\r
2383                               <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>\r
2384                             </taxonomy>\r
2385                           </clade>\r
2386                           <clade>\r
2387                             <taxonomy>\r
2388                               <id provider="uniprot">45351</id>\r
2389                               <code>NEMVE</code>\r
2390                               <scientific_name>Nematostella vectensis</scientific_name>\r
2391                               <common_name>Starlet sea anemone</common_name>\r
2392                               <rank>species</rank>\r
2393                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>\r
2394                             </taxonomy>\r
2395                           </clade>\r
2396                         </clade>\r
2397                         <clade>\r
2398                           <taxonomy>\r
2399                             <id provider="uniprot">6085</id>\r
2400                             <code>HMAXX</code>\r
2401                             <scientific_name>Hydra magnipapillata</scientific_name>\r
2402                             <authority>Ito, 1947</authority>\r
2403                             <rank>species</rank>\r
2404                             <uri>http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif</uri>\r
2405                           </taxonomy>\r
2406                         </clade>\r
2407                       </clade>\r
2408                     </clade>\r
2409                     <clade>\r
2410                       <taxonomy>\r
2411                         <id provider="uniprot">10228</id>\r
2412                         <code>TRIAD</code>\r
2413                         <scientific_name>Trichoplax adhaerens</scientific_name>\r
2414                         <synonym>Trichoplax reptans</synonym>\r
2415                         <rank>species</rank>\r
2416                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>\r
2417                       </taxonomy>\r
2418                       <reference doi="10.1073/pnas.0602076103">\r
2419                       </reference>\r
2420                     </clade>\r
2421                   </clade>\r
2422                   <clade>\r
2423                     <taxonomy>\r
2424                       <id provider="uniprot">27923</id>\r
2425                       <code>MNELE</code>\r
2426                       <scientific_name>Mnemiopsis leidyi</scientific_name>\r
2427                       <authority>A. gassiz, 1865</authority>\r
2428                       <common_name>Sea walnut</common_name>\r
2429                       <synonym>Warty comb jellyfish</synonym>\r
2430                       <rank>species</rank>\r
2431                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>\r
2432                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>\r
2433                     </taxonomy>\r
2434                   </clade>\r
2435                   <clade>\r
2436                     <taxonomy>\r
2437                       <id provider="uniprot">400682</id>\r
2438                       <code>AMPQE</code>\r
2439                       <scientific_name>Amphimedon queenslandica</scientific_name>\r
2440                       <authority>Hooper &amp; Van Soest, 2006</authority>\r
2441                       <common_name>Sponge</common_name>\r
2442                       <synonym>Reniera sp. JGI-2005</synonym>\r
2443                       <rank>species</rank>\r
2444                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>\r
2445                     </taxonomy>\r
2446                   </clade>\r
2447                 </clade>\r
2448                 <clade>\r
2449                   <taxonomy>\r
2450                     <id provider="uniprot">81524</id>\r
2451                     <scientific_name>Codonosigidae</scientific_name>\r
2452                     <rank>family</rank>\r
2453                   </taxonomy>\r
2454                   <clade>\r
2455                     <taxonomy>\r
2456                       <id provider="uniprot">81824</id>\r
2457                       <code>MONBE</code>\r
2458                       <scientific_name>Monosiga brevicollis</scientific_name>\r
2459                       <common_name>Choanoflagellate</common_name>\r
2460                       <rank>species</rank>\r
2461                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>\r
2462                     </taxonomy>\r
2463                   </clade>\r
2464                   <clade>\r
2465                     <taxonomy>\r
2466                       <id provider="uniprot">946362</id>\r
2467                       <code>SALS5</code>\r
2468                       <scientific_name>Salpingoeca rosetta</scientific_name>\r
2469                       <synonym>Proterospongia sp. ATCC 50818</synonym>\r
2470                       <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
2471                       <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>\r
2472                       <rank>species</rank>\r
2473                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>\r
2474                     </taxonomy>\r
2475                   </clade>\r
2476                 </clade>\r
2477               </clade>\r
2478               <clade>\r
2479                 <name>Ichthyophonida &amp; Filasterea</name>\r
2480                 <clade>\r
2481                   <taxonomy>\r
2482                     <id provider="uniprot">198625</id>\r
2483                     <scientific_name>Ichthyophonida</scientific_name>\r
2484                     <rank>order</rank>\r
2485                   </taxonomy>\r
2486                   <clade>\r
2487                     <taxonomy>\r
2488                       <id provider="uniprot">4881</id>\r
2489                       <code>AMOPA</code>\r
2490                       <scientific_name>Amoebidium parasiticum</scientific_name>\r
2491                       <rank>species</rank>\r
2492                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>\r
2493                     </taxonomy>\r
2494                   </clade>\r
2495                   <clade>\r
2496                     <taxonomy>\r
2497                       <id provider="uniprot">72019</id>\r
2498                       <code>SARXX</code>\r
2499                       <scientific_name>Sphaeroforma arctica</scientific_name>\r
2500                       <rank>species</rank>\r
2501                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
2502                     </taxonomy>\r
2503                   </clade>\r
2504                 </clade>\r
2505                 <clade>\r
2506                   <taxonomy>\r
2507                     <scientific_name>Filasterea</scientific_name>\r
2508                   </taxonomy>\r
2509                   <reference doi="10.1371/journal.pone.0002098">\r
2510                   </reference>\r
2511                   <reference>\r
2512                   </reference>\r
2513                   <clade>\r
2514                     <taxonomy>\r
2515                       <id provider="uniprot">595528</id>\r
2516                       <code>CAPO3</code>\r
2517                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>\r
2518                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>\r
2519                     </taxonomy>\r
2520                   </clade>\r
2521                   <clade>\r
2522                     <taxonomy>\r
2523                       <id provider="uniprot">134558</id>\r
2524                       <scientific_name>Ministeria vibrans</scientific_name>\r
2525                       <rank>species</rank>\r
2526                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>\r
2527                     </taxonomy>\r
2528                   </clade>\r
2529                 </clade>\r
2530               </clade>\r
2531             </clade>\r
2532             <clade>\r
2533               <taxonomy>\r
2534                 <scientific_name>Holomycota</scientific_name>\r
2535                 <synonym>Nucletmycea</synonym>\r
2536               </taxonomy>\r
2537               <reference doi="10.1186/1471-2148-9-272">\r
2538                 <desc>Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support</desc>\r
2539               </reference>\r
2540               <clade>\r
2541                 <taxonomy>\r
2542                   <id provider="uniprot">4751</id>\r
2543                   <scientific_name>Fungi</scientific_name>\r
2544                   <rank>kingdom</rank>\r
2545                 </taxonomy>\r
2546                 <reference doi="10.1186/1741-7007-10-47">\r
2547                   <desc>Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi</desc>\r
2548                 </reference>\r
2549                 <clade>\r
2550                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
2551                   <clade>\r
2552                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
2553                     <clade>\r
2554                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
2555                       <clade>\r
2556                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
2557                         <clade>\r
2558                           <name>Dikarya &amp; Mucoromycotina</name>\r
2559                           <clade>\r
2560                             <taxonomy>\r
2561                               <id provider="uniprot">451864</id>\r
2562                               <scientific_name>Dikarya</scientific_name>\r
2563                               <rank>subkingdom</rank>\r
2564                             </taxonomy>\r
2565                             <reference doi="10.1038/nature05110">\r
2566                             </reference>\r
2567                             <reference>\r
2568                             </reference>\r
2569                             <clade>\r
2570                               <taxonomy>\r
2571                                 <id provider="uniprot">4890</id>\r
2572                                 <scientific_name>Ascomycota</scientific_name>\r
2573                                 <rank>phylum</rank>\r
2574                               </taxonomy>\r
2575                               <clade>\r
2576                                 <name>Pezizomycotina &amp; Saccharomycetales</name>\r
2577                                 <clade>\r
2578                                   <taxonomy>\r
2579                                     <id provider="uniprot">147538</id>\r
2580                                     <scientific_name>Pezizomycotina</scientific_name>\r
2581                                     <synonym>Euascomycota</synonym>\r
2582                                     <rank>subphylum</rank>\r
2583                                   </taxonomy>\r
2584                                   <reference doi="0.3852/mycologia.98.6.1018">\r
2585                                     <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
2586                                   </reference>\r
2587                                   <reference>\r
2588                                   </reference>\r
2589                                   <clade>\r
2590                                     <taxonomy>\r
2591                                       <id provider="uniprot">716546</id>\r
2592                                       <scientific_name>Leotiomyceta</scientific_name>\r
2593                                     </taxonomy>\r
2594                                     <clade>\r
2595                                       <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
2596                                       <clade>\r
2597                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
2598                                         <clade>\r
2599                                           <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
2600                                           <clade>\r
2601                                             <taxonomy>\r
2602                                               <id provider="uniprot">715989</id>\r
2603                                               <scientific_name>Sordariomyceta</scientific_name>\r
2604                                             </taxonomy>\r
2605                                             <clade>\r
2606                                               <taxonomy>\r
2607                                                 <id provider="uniprot">147550</id>\r
2608                                                 <scientific_name>Sordariomycetes</scientific_name>\r
2609                                                 <rank>class</rank>\r
2610                                               </taxonomy>\r
2611                                               <clade>\r
2612                                                 <name>Magnaporthales &amp; Hypocreales</name>\r
2613                                                 <clade>\r
2614                                                   <taxonomy>\r
2615                                                     <id provider="uniprot">5125</id>\r
2616                                                     <scientific_name>Hypocreales</scientific_name>\r
2617                                                     <rank>order</rank>\r
2618                                                   </taxonomy>\r
2619                                                   <clade>\r
2620                                                     <taxonomy>\r
2621                                                       <id provider="uniprot">398408</id>\r
2622                                                       <code>AALXX</code>\r
2623                                                       <scientific_name>Acremonium alcalophilum</scientific_name>\r
2624                                                       <rank>species</rank>\r
2625                                                       <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
2626                                                     </taxonomy>\r
2627                                                   </clade>\r
2628                                                   <clade>\r
2629                                                     <taxonomy>\r
2630                                                       <id provider="uniprot">229533</id>\r
2631                                                       <code>GIBZE</code>\r
2632                                                       <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>\r
2633                                                       <common_name>Wheat head blight fungus</common_name>\r
2634                                                       <synonym>Fusarium graminearum</synonym>\r
2635                                                       <synonym>Gibberella zeae PH-1</synonym>\r
2636                                                       <rank>strain</rank>\r
2637                                                       <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>\r
2638                                                     </taxonomy>\r
2639                                                   </clade>\r
2640                                                   <clade>\r
2641                                                     <taxonomy>\r
2642                                                       <id provider="uniprot">413071</id>\r
2643                                                       <code>HYPVG</code>\r
2644                                                       <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>\r
2645                                                       <common_name>Gliocladium virens</common_name>\r
2646                                                       <synonym>Trichoderma virens</synonym>\r
2647                                                       <synonym>Gliocladium flavofuscum</synonym>\r
2648                                                       <synonym>Trichoderma virens Gv29-8</synonym>\r
2649                                                       <synonym>Gliocladium virens</synonym>\r
2650                                                       <rank>strain</rank>\r
2651                                                       <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>\r
2652                                                     </taxonomy>\r
2653                                                   </clade>\r
2654                                                 </clade>\r
2655                                                 <clade>\r
2656                                                   <taxonomy>\r
2657                                                     <id provider="uniprot">148305</id>\r
2658                                                     <code>MAGGR</code>\r
2659                                                     <scientific_name>Magnaporthe grisea</scientific_name>\r
2660                                                     <common_name>Rice blast fungus</common_name>\r
2661                                                     <synonym>Pyricularia grisea</synonym>\r
2662                                                     <rank>species</rank>\r
2663                                                     <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>\r
2664                                                   </taxonomy>\r
2665                                                 </clade>\r
2666                                               </clade>\r
2667                                               <clade>\r
2668                                                 <taxonomy>\r
2669                                                   <id provider="uniprot">5139</id>\r
2670                                                   <scientific_name>Sordariales</scientific_name>\r
2671                                                   <rank>order</rank>\r
2672                                                 </taxonomy>\r
2673                                                 <clade>\r
2674                                                   <taxonomy>\r
2675                                                     <id provider="uniprot">35718</id>\r
2676                                                     <scientific_name>Chaetomiaceae</scientific_name>\r
2677                                                     <rank>family</rank>\r
2678                                                   </taxonomy>\r
2679                                                   <clade>\r
2680                                                     <taxonomy>\r
2681                                                       <id provider="uniprot">35719</id>\r
2682                                                       <scientific_name>Thielavia</scientific_name>\r
2683                                                       <rank>genus</rank>\r
2684                                                     </taxonomy>\r
2685                                                     <clade>\r
2686                                                       <taxonomy>\r
2687                                                         <id provider="uniprot">573729</id>\r
2688                                                         <code>THIHA</code>\r
2689                                                         <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>\r
2690                                                         <authority>(Apinis) Oorschot 1977</authority>\r
2691                                                         <synonym>Sporotrichum thermophilum</synonym>\r
2692                                                         <synonym>Myceliophthora thermophila</synonym>\r
2693                                                         <rank>species</rank>\r
2694                                                         <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
2695                                                       </taxonomy>\r
2696                                                     </clade>\r
2697                                                     <clade>\r
2698                                                       <taxonomy>\r
2699                                                         <id provider="uniprot">578455</id>\r
2700                                                         <code>THITE</code>\r
2701                                                         <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>\r
2702                                                         <synonym>Acremonium alabamense</synonym>\r
2703                                                         <synonym>Thielavia terrestris NRRL 8126</synonym>\r
2704                                                         <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
2705                                                       </taxonomy>\r
2706                                                     </clade>\r
2707                                                   </clade>\r
2708                                                   <clade>\r
2709                                                     <taxonomy>\r
2710                                                       <id provider="uniprot">306901</id>\r
2711                                                       <code>CHAGB</code>\r
2712                                                       <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>\r
2713                                                       <authority>Kunze 1817</authority>\r
2714                                                       <common_name>Soil fungus</common_name>\r
2715                                                       <rank>strain</rank>\r
2716                                                     </taxonomy>\r
2717                                                   </clade>\r
2718                                                 </clade>\r
2719                                                 <clade>\r
2720                                                   <taxonomy>\r
2721                                                     <id provider="uniprot">367110</id>\r
2722                                                     <code>NEUCR</code>\r
2723                                                     <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>\r
2724                                                     <rank>strain</rank>\r
2725                                                   </taxonomy>\r
2726                                                 </clade>\r
2727                                               </clade>\r
2728                                             </clade>\r
2729                                             <clade>\r
2730                                               <taxonomy>\r
2731                                                 <id provider="uniprot">147548</id>\r
2732                                                 <scientific_name>Leotiomycetes</scientific_name>\r
2733                                                 <rank>class</rank>\r
2734                                               </taxonomy>\r
2735                                               <clade>\r
2736                                                 <taxonomy>\r
2737                                                   <id provider="uniprot">28983</id>\r
2738                                                   <scientific_name>Sclerotiniaceae</scientific_name>\r
2739                                                   <rank>family</rank>\r
2740                                                 </taxonomy>\r
2741                                                 <clade>\r
2742                                                   <taxonomy>\r
2743                                                     <id provider="uniprot">999810</id>\r
2744                                                     <code>BOTF4</code>\r
2745                                                     <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>\r
2746                                                     <common_name>Noble rot fungus</common_name>\r
2747                                                     <synonym>Botrytis cinerea</synonym>\r
2748                                                     <rank>strain</rank>\r
2749                                                   </taxonomy>\r
2750                                                 </clade>\r
2751                                                 <clade>\r
2752                                                   <taxonomy>\r
2753                                                     <id provider="uniprot">665079</id>\r
2754                                                     <code>SCLS1</code>\r
2755                                                     <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>\r
2756                                                     <common_name>White mold</common_name>\r
2757                                                     <synonym>Whetzelinia sclerotiorum</synonym>\r
2758                                                     <rank>strain</rank>\r
2759                                                   </taxonomy>\r
2760                                                 </clade>\r
2761                                               </clade>\r
2762                                               <clade>\r
2763                                                 <taxonomy>\r
2764                                                   <id provider="uniprot">78148</id>\r
2765                                                   <scientific_name>Oidiodendron maius</scientific_name>\r
2766                                                   <rank>species</rank>\r
2767                                                 </taxonomy>\r
2768                                               </clade>\r
2769                                             </clade>\r
2770                                           </clade>\r
2771                                           <clade>\r
2772                                             <taxonomy>\r
2773                                               <id provider="uniprot">388435</id>\r
2774                                               <scientific_name>Lecanoromycetidae</scientific_name>\r
2775                                               <rank>subclass</rank>\r
2776                                             </taxonomy>\r
2777                                             <clade>\r
2778                                               <taxonomy>\r
2779                                                 <id provider="uniprot">27339</id>\r
2780                                                 <scientific_name>Cladonia grayi</scientific_name>\r
2781                                                 <synonym>Cladonia grayi Merr</synonym>\r
2782                                                 <rank>species</rank>\r
2783                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
2784                                               </taxonomy>\r
2785                                             </clade>\r
2786                                             <clade>\r
2787                                               <taxonomy>\r
2788                                                 <id provider="uniprot">107463</id>\r
2789                                                 <scientific_name>Xanthoria parietina</scientific_name>\r
2790                                                 <rank>species</rank>\r
2791                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
2792                                               </taxonomy>\r
2793                                             </clade>\r
2794                                           </clade>\r
2795                                         </clade>\r
2796                                         <clade>\r
2797                                           <taxonomy>\r
2798                                             <id provider="uniprot">147541</id>\r
2799                                             <scientific_name>Dothideomycetes</scientific_name>\r
2800                                             <common_name>bitunicate ascomycetes</common_name>\r
2801                                             <rank>class</rank>\r
2802                                           </taxonomy>\r
2803                                           <reference doi="10.3114/sim.2009.64.01">\r
2804                                             <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
2805                                           </reference>\r
2806                                           <clade>\r
2807                                             <taxonomy>\r
2808                                               <id provider="uniprot">451867</id>\r
2809                                               <scientific_name>Dothideomycetidae</scientific_name>\r
2810                                               <rank>subclass</rank>\r
2811                                             </taxonomy>\r
2812                                             <reference doi="10.3852/mycologia.98.6.1041">\r
2813                                               <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>\r
2814                                             </reference>\r
2815                                             <reference>\r
2816                                             </reference>\r
2817                                             <reference>\r
2818                                             </reference>\r
2819                                             <clade>\r
2820                                               <taxonomy>\r
2821                                                 <id provider="uniprot">134362</id>\r
2822                                                 <scientific_name>Capnodiales</scientific_name>\r
2823                                                 <rank>order</rank>\r
2824                                               </taxonomy>\r
2825                                               <clade>\r
2826                                                 <taxonomy>\r
2827                                                   <id provider="uniprot">41254</id>\r
2828                                                   <scientific_name>Mycosphaerella</scientific_name>\r
2829                                                   <rank>genus</rank>\r
2830                                                 </taxonomy>\r
2831                                                 <clade>\r
2832                                                   <taxonomy>\r
2833                                                     <id provider="uniprot">83344</id>\r
2834                                                     <code>PFIXX</code>\r
2835                                                     <scientific_name>Pseudocercospora fijiensis</scientific_name>\r
2836                                                     <synonym>Mycosphaerella fijiensis</synonym>\r
2837                                                     <rank>species</rank>\r
2838                                                   </taxonomy>\r
2839                                                 </clade>\r
2840                                                 <clade>\r
2841                                                   <taxonomy>\r
2842                                                     <id provider="uniprot">336722</id>\r
2843                                                     <code>MYCGM</code>\r
2844                                                     <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>\r
2845                                                     <common_name>Speckled leaf blotch fungus</common_name>\r
2846                                                     <synonym>Zymoseptoria tritici IPO323</synonym>\r
2847                                                     <synonym>Mycosphaerella graminicola IPO323</synonym>\r
2848                                                     <synonym>Septoria tritici</synonym>\r
2849                                                     <rank>strain</rank>\r
2850                                                   </taxonomy>\r
2851                                                 </clade>\r
2852                                                 <clade>\r
2853                                                   <taxonomy>\r
2854                                                     <id provider="uniprot">64363</id>\r
2855                                                     <code>MYCPJ</code>\r
2856                                                     <scientific_name>Mycosphaerella pini</scientific_name>\r
2857                                                     <common_name>Red band needle blight disease fungus</common_name>\r
2858                                                     <synonym>Dothistroma septosporum</synonym>\r
2859                                                     <synonym>Dothistroma pini</synonym>\r
2860                                                     <rank>species</rank>\r
2861                                                   </taxonomy>\r
2862                                                 </clade>\r
2863                                                 <clade>\r
2864                                                   <taxonomy>\r
2865                                                     <id provider="uniprot">692275</id>\r
2866                                                     <code>MPSXX</code>\r
2867                                                     <scientific_name>Mycosphaerella populorum SO2202</scientific_name>\r
2868                                                     <synonym>Septoria musiva SO2202</synonym>\r
2869                                                     <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>\r
2870                                                   </taxonomy>\r
2871                                                 </clade>\r
2872                                               </clade>\r
2873                                               <clade>\r
2874                                                 <taxonomy>\r
2875                                                   <id provider="uniprot">430998</id>\r
2876                                                   <code>BCOXX</code>\r
2877                                                   <scientific_name>Baudoinia compniacensis</scientific_name>\r
2878                                                   <common_name>Angels&apos; Share fungus</common_name>\r
2879                                                   <synonym>Torula compniacensis</synonym>\r
2880                                                   <rank>species</rank>\r
2881                                                   <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>\r
2882                                                 </taxonomy>\r
2883                                               </clade>\r
2884                                             </clade>\r
2885                                             <clade>\r
2886                                               <taxonomy>\r
2887                                                 <id provider="uniprot">5580</id>\r
2888                                                 <code>AURPU</code>\r
2889                                                 <scientific_name>Aureobasidium pullulans</scientific_name>\r
2890                                                 <common_name>Black yeast</common_name>\r
2891                                                 <synonym>Pullularia pullulans</synonym>\r
2892                                                 <rank>species</rank>\r
2893                                               </taxonomy>\r
2894                                               <clade>\r
2895                                                 <taxonomy>\r
2896                                                   <id provider="uniprot">178873</id>\r
2897                                                   <code>APPXX</code>\r
2898                                                   <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>\r
2899                                                   <rank>varietas</rank>\r
2900                                                 </taxonomy>\r
2901                                               </clade>\r
2902                                               <clade>\r
2903                                                 <taxonomy>\r
2904                                                   <id provider="uniprot">46634</id>\r
2905                                                   <code>APMXX</code>\r
2906                                                   <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>\r
2907                                                   <rank>varietas</rank>\r
2908                                                   <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>\r
2909                                                 </taxonomy>\r
2910                                               </clade>\r
2911                                               <clade>\r
2912                                                 <taxonomy>\r
2913                                                   <id provider="uniprot">1042127</id>\r
2914                                                   <code>APSXX</code>\r
2915                                                   <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>\r
2916                                                   <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>\r
2917                                                   <rank>varietas</rank>\r
2918                                                 </taxonomy>\r
2919                                               </clade>\r
2920                                             </clade>\r
2921                                           </clade>\r
2922                                           <clade>\r
2923                                             <taxonomy>\r
2924                                               <id provider="uniprot">715340</id>\r
2925                                               <scientific_name>Pleosporineae</scientific_name>\r
2926                                               <rank>suborder</rank>\r
2927                                             </taxonomy>\r
2928                                             <clade>\r
2929                                               <taxonomy>\r
2930                                                 <id provider="uniprot">28556</id>\r
2931                                                 <scientific_name>Pleosporaceae</scientific_name>\r
2932                                                 <rank>family</rank>\r
2933                                               </taxonomy>\r
2934                                               <clade>\r
2935                                                 <name>Cochliobolus &amp; Setosphaeria</name>\r
2936                                                 <clade>\r
2937                                                   <taxonomy>\r
2938                                                     <id provider="uniprot">45130</id>\r
2939                                                     <code>COCSA</code>\r
2940                                                     <scientific_name>Cochliobolus sativus</scientific_name>\r
2941                                                     <synonym>Bipolaris sorokiniana</synonym>\r
2942                                                     <rank>species</rank>\r
2943                                                     <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
2944                                                   </taxonomy>\r
2945                                                 </clade>\r
2946                                                 <clade>\r
2947                                                   <taxonomy>\r
2948                                                     <id provider="uniprot">93612</id>\r
2949                                                     <code>SETTU</code>\r
2950                                                     <scientific_name>Setosphaeria turcica</scientific_name>\r
2951                                                     <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
2952                                                     <common_name>Northern corn leaf blight disease fungus</common_name>\r
2953                                                     <synonym>Exserohilum turcicum</synonym>\r
2954                                                     <synonym>Helminthosporium turcicum</synonym>\r
2955                                                     <rank>species</rank>\r
2956                                                   </taxonomy>\r
2957                                                 </clade>\r
2958                                               </clade>\r
2959                                               <clade>\r
2960                                                 <taxonomy>\r
2961                                                   <id provider="uniprot">426418</id>\r
2962                                                   <code>PYRTR</code>\r
2963                                                   <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
2964                                                   <common_name>Wheat tan spot fungus</common_name>\r
2965                                                   <synonym>Drechslera tritici-repentis</synonym>\r
2966                                                   <rank>strain</rank>\r
2967                                                 </taxonomy>\r
2968                                               </clade>\r
2969                                             </clade>\r
2970                                             <clade>\r
2971                                               <taxonomy>\r
2972                                                 <id provider="uniprot">321614</id>\r
2973                                                 <code>PHANO</code>\r
2974                                                 <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>\r
2975                                                 <common_name>Glume blotch fungus</common_name>\r
2976                                                 <synonym>Septoria nodorum</synonym>\r
2977                                                 <rank>strain</rank>\r
2978                                               </taxonomy>\r
2979                                             </clade>\r
2980                                           </clade>\r
2981                                         </clade>\r
2982                                       </clade>\r
2983                                       <clade>\r
2984                                         <taxonomy>\r
2985                                           <id provider="uniprot">28568</id>\r
2986                                           <scientific_name>Trichocomaceae</scientific_name>\r
2987                                           <rank>family</rank>\r
2988                                         </taxonomy>\r
2989                                         <clade>\r
2990                                           <taxonomy>\r
2991                                             <id provider="uniprot">5052</id>\r
2992                                             <scientific_name>Aspergillus</scientific_name>\r
2993                                             <rank>genus</rank>\r
2994                                           </taxonomy>\r
2995                                           <clade>\r
2996                                             <taxonomy>\r
2997                                               <id provider="uniprot">332952</id>\r
2998                                               <code>ASPFN</code>\r
2999                                               <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>\r
3000                                               <synonym>Aspergillus flavus NRRL3357</synonym>\r
3001                                               <rank>strain</rank>\r
3002                                               <uri>http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg</uri>\r
3003                                             </taxonomy>\r
3004                                           </clade>\r
3005                                           <clade>\r
3006                                             <taxonomy>\r
3007                                               <id provider="uniprot">425011</id>\r
3008                                               <code>ASPNC</code>\r
3009                                               <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>\r
3010                                               <synonym>Aspergillus niger CBS 513.88</synonym>\r
3011                                               <rank>strain</rank>\r
3012                                               <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>\r
3013                                             </taxonomy>\r
3014                                           </clade>\r
3015                                           <clade>\r
3016                                             <taxonomy>\r
3017                                               <id provider="uniprot">344612</id>\r
3018                                               <code>ASPCL</code>\r
3019                                               <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>\r
3020                                               <synonym>Aspergillus clavatus NRRL 1</synonym>\r
3021                                             </taxonomy>\r
3022                                           </clade>\r
3023                                         </clade>\r
3024                                         <clade>\r
3025                                           <name>Neosartorya &amp; Emericella</name>\r
3026                                           <clade>\r
3027                                             <taxonomy>\r
3028                                               <id provider="uniprot">227321</id>\r
3029                                               <code>EMENI</code>\r
3030                                               <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>\r
3031                                               <authority>Vuill. 1927</authority>\r
3032                                               <synonym>Aspergillus nidulans</synonym>\r
3033                                               <rank>strain</rank>\r
3034                                             </taxonomy>\r
3035                                           </clade>\r
3036                                           <clade>\r
3037                                             <taxonomy>\r
3038                                               <id provider="uniprot">331117</id>\r
3039                                               <code>NEOFI</code>\r
3040                                               <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
3041                                               <synonym>Aspergillus fischerianus</synonym>\r
3042                                               <rank>strain</rank>\r
3043                                             </taxonomy>\r
3044                                           </clade>\r
3045                                         </clade>\r
3046                                       </clade>\r
3047                                     </clade>\r
3048                                     <clade>\r
3049                                       <taxonomy>\r
3050                                         <id provider="uniprot">33183</id>\r
3051                                         <scientific_name>Onygenales</scientific_name>\r
3052                                         <rank>order</rank>\r
3053                                       </taxonomy>\r
3054                                       <reference>\r
3055                                         <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>\r
3056                                       </reference>\r
3057                                       <reference>\r
3058                                       </reference>\r
3059                                       <clade>\r
3060                                         <name>mitosporic Onygenales &amp; Onygenaceae</name>\r
3061                                         <clade>\r
3062                                           <taxonomy>\r
3063                                             <id provider="uniprot">246410</id>\r
3064                                             <code>COCIM</code>\r
3065                                             <scientific_name>Coccidioides immitis (strain RS)</scientific_name>\r
3066                                             <common_name>Valley fever fungus</common_name>\r
3067                                             <synonym>Coccidioides immitis RS</synonym>\r
3068                                           </taxonomy>\r
3069                                         </clade>\r
3070                                         <clade>\r
3071                                           <taxonomy>\r
3072                                             <id provider="uniprot">336963</id>\r
3073                                             <code>UNCRE</code>\r
3074                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
3075                                             <rank>strain</rank>\r
3076                                           </taxonomy>\r
3077                                         </clade>\r
3078                                       </clade>\r
3079                                       <clade>\r
3080                                         <taxonomy>\r
3081                                           <id provider="uniprot">447093</id>\r
3082                                           <code>AJECG</code>\r
3083                                           <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>\r
3084                                           <common_name>Darling&apos;s disease fungus</common_name>\r
3085                                           <synonym>Histoplasma capsulatum</synonym>\r
3086                                         </taxonomy>\r
3087                                       </clade>\r
3088                                     </clade>\r
3089                                   </clade>\r
3090                                   <clade>\r
3091                                     <taxonomy>\r
3092                                       <id provider="uniprot">656061</id>\r
3093                                       <code>TUBMM</code>\r
3094                                       <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
3095                                       <common_name>Perigord black truffle</common_name>\r
3096                                       <synonym>Tuber melanosporum Mel28</synonym>\r
3097                                       <rank>strain</rank>\r
3098                                       <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>\r
3099                                     </taxonomy>\r
3100                                   </clade>\r
3101                                 </clade>\r
3102                                 <clade>\r
3103                                   <taxonomy>\r
3104                                     <id provider="uniprot">4892</id>\r
3105                                     <scientific_name>Saccharomycetales</scientific_name>\r
3106                                     <common_name>budding yeasts</common_name>\r
3107                                     <rank>order</rank>\r
3108                                   </taxonomy>\r
3109                                   <reference doi="10.1186/1471-2148-6-99">\r
3110                                     <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>\r
3111                                   </reference>\r
3112                                   <reference>\r
3113                                   </reference>\r
3114                                   <clade>\r
3115                                     <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>\r
3116                                     <clade>\r
3117                                       <taxonomy>\r
3118                                         <id provider="uniprot">4893</id>\r
3119                                         <scientific_name>Saccharomycetaceae</scientific_name>\r
3120                                         <rank>family</rank>\r
3121                                       </taxonomy>\r
3122                                       <clade>\r
3123                                         <name>Naumovozyma &amp; Saccharomyces</name>\r
3124                                         <clade>\r
3125                                           <taxonomy>\r
3126                                             <id provider="uniprot">1064592</id>\r
3127                                             <code>NAUCC</code>\r
3128                                             <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>\r
3129                                             <common_name>Yeast</common_name>\r
3130                                             <synonym>Saccharomyces castellii</synonym>\r
3131                                             <rank>strain</rank>\r
3132                                           </taxonomy>\r
3133                                         </clade>\r
3134                                         <clade>\r
3135                                           <taxonomy>\r
3136                                             <id provider="uniprot">559292</id>\r
3137                                             <code>YEAST</code>\r
3138                                             <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>\r
3139                                             <common_name>Baker&apos;s yeast</common_name>\r
3140                                             <rank>strain</rank>\r
3141                                           </taxonomy>\r
3142                                         </clade>\r
3143                                       </clade>\r
3144                                       <clade>\r
3145                                         <name>Eremothecium &amp; Kluyveromyces</name>\r
3146                                         <clade>\r
3147                                           <taxonomy>\r
3148                                             <id provider="uniprot">284590</id>\r
3149                                             <code>KLULA</code>\r
3150                                             <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>\r
3151                                             <common_name>Yeast</common_name>\r
3152                                             <synonym>Candida sphaerica</synonym>\r
3153                                             <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>\r
3154                                           </taxonomy>\r
3155                                         </clade>\r
3156                                         <clade>\r
3157                                           <taxonomy>\r
3158                                             <id provider="uniprot">284811</id>\r
3159                                             <code>ASHGO</code>\r
3160                                             <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>\r
3161                                             <common_name>Yeast</common_name>\r
3162                                             <synonym>Eremothecium gossypii</synonym>\r
3163                                           </taxonomy>\r
3164                                         </clade>\r
3165                                       </clade>\r
3166                                     </clade>\r
3167                                     <clade>\r
3168                                       <name>Debaryomyces &amp; Candida</name>\r
3169                                       <clade>\r
3170                                         <taxonomy>\r
3171                                           <id provider="uniprot">5475</id>\r
3172                                           <scientific_name>Candida</scientific_name>\r
3173                                           <synonym>Torulopsis</synonym>\r
3174                                           <rank>genus</rank>\r
3175                                         </taxonomy>\r
3176                                         <clade>\r
3177                                           <taxonomy>\r
3178                                             <id provider="uniprot">237561</id>\r
3179                                             <code>CANAL</code>\r
3180                                             <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>\r
3181                                             <common_name>Yeast</common_name>\r
3182                                             <rank>strain</rank>\r
3183                                           </taxonomy>\r
3184                                         </clade>\r
3185                                         <clade>\r
3186                                           <taxonomy>\r
3187                                             <id provider="uniprot">294747</id>\r
3188                                             <code>CANTT</code>\r
3189                                             <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>\r
3190                                             <common_name>Yeast</common_name>\r
3191                                             <rank>strain</rank>\r
3192                                           </taxonomy>\r
3193                                         </clade>\r
3194                                       </clade>\r
3195                                       <clade>\r
3196                                         <taxonomy>\r
3197                                           <id provider="uniprot">284592</id>\r
3198                                           <code>DEBHA</code>\r
3199                                           <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>\r
3200                                           <common_name>Yeast</common_name>\r
3201                                           <synonym>Torulaspora hansenii</synonym>\r
3202                                           <synonym>Debaryomyces hansenii CBS767</synonym>\r
3203                                         </taxonomy>\r
3204                                       </clade>\r
3205                                     </clade>\r
3206                                   </clade>\r
3207                                   <clade>\r
3208                                     <taxonomy>\r
3209                                       <id provider="uniprot">284591</id>\r
3210                                       <code>YARLI</code>\r
3211                                       <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>\r
3212                                       <common_name>Yeast</common_name>\r
3213                                       <synonym>Candida lipolytica</synonym>\r
3214                                       <rank>strain</rank>\r
3215                                     </taxonomy>\r
3216                                   </clade>\r
3217                                 </clade>\r
3218                               </clade>\r
3219                               <clade>\r
3220                                 <taxonomy>\r
3221                                   <id provider="uniprot">451866</id>\r
3222                                   <scientific_name>Taphrinomycotina</scientific_name>\r
3223                                   <rank>subphylum</rank>\r
3224                                 </taxonomy>\r
3225                                 <clade>\r
3226                                   <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
3227                                   <clade>\r
3228                                     <taxonomy>\r
3229                                       <id provider="uniprot">4895</id>\r
3230                                       <scientific_name>Schizosaccharomyces</scientific_name>\r
3231                                       <rank>genus</rank>\r
3232                                     </taxonomy>\r
3233                                     <clade>\r
3234                                       <taxonomy>\r
3235                                         <id provider="uniprot">402676</id>\r
3236                                         <code>SCHJY</code>\r
3237                                         <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>\r
3238                                         <common_name>Fission yeast</common_name>\r
3239                                         <rank>strain</rank>\r
3240                                       </taxonomy>\r
3241                                     </clade>\r
3242                                     <clade>\r
3243                                       <taxonomy>\r
3244                                         <id provider="uniprot">4899</id>\r
3245                                         <code>SCHOT</code>\r
3246                                         <scientific_name>Schizosaccharomyces octosporus</scientific_name>\r
3247                                         <common_name>Fission yeast</common_name>\r
3248                                         <rank>species</rank>\r
3249                                         <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>\r
3250                                       </taxonomy>\r
3251                                     </clade>\r
3252                                     <clade>\r
3253                                       <taxonomy>\r
3254                                         <id provider="uniprot">284812</id>\r
3255                                         <code>SCHPO</code>\r
3256                                         <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>\r
3257                                         <common_name>Fission yeast</common_name>\r
3258                                         <rank>strain</rank>\r
3259                                       </taxonomy>\r
3260                                     </clade>\r
3261                                   </clade>\r
3262                                   <clade>\r
3263                                     <taxonomy>\r
3264                                       <id provider="uniprot">4754</id>\r
3265                                       <code>PNECA</code>\r
3266                                       <scientific_name>Pneumocystis carinii</scientific_name>\r
3267                                       <rank>species</rank>\r
3268                                     </taxonomy>\r
3269                                   </clade>\r
3270                                 </clade>\r
3271                                 <clade>\r
3272                                   <taxonomy>\r
3273                                     <id provider="uniprot">5606</id>\r
3274                                     <scientific_name>Saitoella complicata</scientific_name>\r
3275                                     <rank>species</rank>\r
3276                                   </taxonomy>\r
3277                                 </clade>\r
3278                               </clade>\r
3279                             </clade>\r
3280                             <clade>\r
3281                               <taxonomy>\r
3282                                 <id provider="uniprot">5204</id>\r
3283                                 <scientific_name>Basidiomycota</scientific_name>\r
3284                                 <rank>phylum</rank>\r
3285                               </taxonomy>\r
3286                               <clade>\r
3287                                 <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
3288                                 <clade>\r
3289                                   <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
3290                                   <clade>\r
3291                                     <taxonomy>\r
3292                                       <id provider="uniprot">5302</id>\r
3293                                       <scientific_name>Agaricomycotina</scientific_name>\r
3294                                     </taxonomy>\r
3295                                     <clade>\r
3296                                       <taxonomy>\r
3297                                         <id provider="uniprot">155619</id>\r
3298                                         <scientific_name>Homobasidiomycetes</scientific_name>\r
3299                                         <rank>class</rank>\r
3300                                       </taxonomy>\r
3301                                       <reference doi="10.1098/rspb.2002.2123">\r
3302                                         <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
3303                                       </reference>\r
3304                                       <clade>\r
3305                                         <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
3306                                         <clade>\r
3307                                           <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
3308                                           <clade>\r
3309                                             <taxonomy>\r
3310                                               <id provider="uniprot">452333</id>\r
3311                                               <scientific_name>Agaricomycetidae</scientific_name>\r
3312                                               <rank>subclass</rank>\r
3313                                             </taxonomy>\r
3314                                             <clade>\r
3315                                               <name>Agaricales &amp; Boletales</name>\r
3316                                               <clade>\r
3317                                                 <taxonomy>\r
3318                                                   <id provider="uniprot">5338</id>\r
3319                                                   <scientific_name>Agaricales</scientific_name>\r
3320                                                   <rank>order</rank>\r
3321                                                 </taxonomy>\r
3322                                                 <clade>\r
3323                                                   <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
3324                                                   <clade>\r
3325                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
3326                                                     <clade>\r
3327                                                       <name>Agaricus &amp; Coprinopsis</name>\r
3328                                                       <clade>\r
3329                                                         <taxonomy>\r
3330                                                           <id provider="uniprot">597362</id>\r
3331                                                           <code>AGABU</code>\r
3332                                                           <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>\r
3333                                                           <common_name>White button mushroom</common_name>\r
3334                                                           <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>\r
3335                                                           <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
3336                                                         </taxonomy>\r
3337                                                       </clade>\r
3338                                                       <clade>\r
3339                                                         <taxonomy>\r
3340                                                           <id provider="uniprot">5346</id>\r
3341                                                           <code>COPC7</code>\r
3342                                                           <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>\r
3343                                                           <common_name>Inky cap fungus</common_name>\r
3344                                                           <synonym>Hormographiella aspergillata</synonym>\r
3345                                                           <rank>strain</rank>\r
3346                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>\r
3347                                                         </taxonomy>\r
3348                                                       </clade>\r
3349                                                     </clade>\r
3350                                                     <clade>\r
3351                                                       <taxonomy>\r
3352                                                         <id provider="uniprot">486041</id>\r
3353                                                         <code>LACBS</code>\r
3354                                                         <scientific_name>Laccaria bicolor</scientific_name>\r
3355                                                         <common_name>Bicoloured deceiver</common_name>\r
3356                                                         <synonym>Laccaria laccata var. bicolor</synonym>\r
3357                                                         <synonym>Laccaria bicolor S238N-H82</synonym>\r
3358                                                         <rank>strain</rank>\r
3359                                                         <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>\r
3360                                                       </taxonomy>\r
3361                                                     </clade>\r
3362                                                   </clade>\r
3363                                                   <clade>\r
3364                                                     <taxonomy>\r
3365                                                       <id provider="uniprot">206324</id>\r
3366                                                       <scientific_name>Gymnopus luxurians</scientific_name>\r
3367                                                       <rank>species</rank>\r
3368                                                       <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
3369                                                     </taxonomy>\r
3370                                                   </clade>\r
3371                                                 </clade>\r
3372                                                 <clade>\r
3373                                                   <taxonomy>\r
3374                                                     <id provider="uniprot">5322</id>\r
3375                                                     <code>PLEOS</code>\r
3376                                                     <scientific_name>Pleurotus ostreatus</scientific_name>\r
3377                                                     <common_name>Oyster mushroom</common_name>\r
3378                                                     <synonym>White-rot fungus</synonym>\r
3379                                                     <rank>species</rank>\r
3380                                                     <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
3381                                                   </taxonomy>\r
3382                                                 </clade>\r
3383                                               </clade>\r
3384                                               <clade>\r
3385                                                 <taxonomy>\r
3386                                                   <id provider="uniprot">68889</id>\r
3387                                                   <scientific_name>Boletales</scientific_name>\r
3388                                                   <synonym>Melanogastrales</synonym>\r
3389                                                   <synonym>Sclerodermatales</synonym>\r
3390                                                   <rank>order</rank>\r
3391                                                 </taxonomy>\r
3392                                                 <clade>\r
3393                                                   <taxonomy>\r
3394                                                     <id provider="uniprot">227334</id>\r
3395                                                     <scientific_name>Coniophorineae</scientific_name>\r
3396                                                     <rank>suborder</rank>\r
3397                                                   </taxonomy>\r
3398                                                   <clade>\r
3399                                                     <taxonomy>\r
3400                                                       <id provider="uniprot">80637</id>\r
3401                                                       <code>CPUXX</code>\r
3402                                                       <scientific_name>Coniophora puteana</scientific_name>\r
3403                                                       <authority>Schum. ex Fries</authority>\r
3404                                                       <common_name>cellar fungus</common_name>\r
3405                                                       <rank>species</rank>\r
3406                                                       <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
3407                                                     </taxonomy>\r
3408                                                   </clade>\r
3409                                                   <clade>\r
3410                                                     <taxonomy>\r
3411                                                       <id provider="uniprot">578457</id>\r
3412                                                       <code>SERL9</code>\r
3413                                                       <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>\r
3414                                                       <common_name>Dry rot fungus</common_name>\r
3415                                                       <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>\r
3416                                                     </taxonomy>\r
3417                                                   </clade>\r
3418                                                 </clade>\r
3419                                                 <clade>\r
3420                                                   <taxonomy>\r
3421                                                     <id provider="uniprot">388859</id>\r
3422                                                     <scientific_name>Hydnomerulius pinastri</scientific_name>\r
3423                                                     <common_name>Spiny dry rot fungus</common_name>\r
3424                                                     <rank>species</rank>\r
3425                                                     <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>\r
3426                                                   </taxonomy>\r
3427                                                 </clade>\r
3428                                               </clade>\r
3429                                             </clade>\r
3430                                             <clade>\r
3431                                               <taxonomy>\r
3432                                                 <id provider="uniprot">202697</id>\r
3433                                                 <code>JARXX</code>\r
3434                                                 <scientific_name>Jaapia argillacea</scientific_name>\r
3435                                                 <rank>species</rank>\r
3436                                                 <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>\r
3437                                               </taxonomy>\r
3438                                             </clade>\r
3439                                           </clade>\r
3440                                           <clade>\r
3441                                             <taxonomy>\r
3442                                               <id provider="uniprot">104355</id>\r
3443                                               <code>GLOTR</code>\r
3444                                               <scientific_name>Gloeophyllum trabeum</scientific_name>\r
3445                                               <common_name>Brown rot fungus</common_name>\r
3446                                               <rank>species</rank>\r
3447                                               <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>\r
3448                                             </taxonomy>\r
3449                                           </clade>\r
3450                                         </clade>\r
3451                                         <clade>\r
3452                                           <taxonomy>\r
3453                                             <id provider="uniprot">5303</id>\r
3454                                             <scientific_name>Aphyllophorales</scientific_name>\r
3455                                             <authority>Gäum. (1926)</authority>\r
3456                                             <common_name>Shelf Fungi</common_name>\r
3457                                             <synonym>Polyporales</synonym>\r
3458                                             <rank>order</rank>\r
3459                                           </taxonomy>\r
3460                                           <clade>\r
3461                                             <taxonomy>\r
3462                                               <id provider="uniprot">83233</id>\r
3463                                               <scientific_name>Coriolaceae</scientific_name>\r
3464                                               <rank>family</rank>\r
3465                                             </taxonomy>\r
3466                                             <reference doi="10.1017/S1477200005001623">\r
3467                                               <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
3468                                             </reference>\r
3469                                             <reference>\r
3470                                             </reference>\r
3471                                             <reference>\r
3472                                             </reference>\r
3473                                             <clade>\r
3474                                               <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
3475                                               <clade>\r
3476                                                 <name>Antrodia clade</name>\r
3477                                                 <taxonomy>\r
3478                                                   <common_name>Antrodia clade</common_name>\r
3479                                                 </taxonomy>\r
3480                                                 <clade>\r
3481                                                   <taxonomy>\r
3482                                                     <id provider="uniprot">40483</id>\r
3483                                                     <code>FPIXX</code>\r
3484                                                     <scientific_name>Fomitopsis pinicola</scientific_name>\r
3485                                                     <authority>(Swartz) P. Karsten</authority>\r
3486                                                     <common_name>Red banded polypore</common_name>\r
3487                                                     <synonym>Fomes pinicola</synonym>\r
3488                                                     <synonym>Boletus pinicola</synonym>\r
3489                                                     <rank>species</rank>\r
3490                                                     <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>\r
3491                                                   </taxonomy>\r
3492                                                 </clade>\r
3493                                                 <clade>\r
3494                                                   <taxonomy>\r
3495                                                     <id provider="uniprot">104341</id>\r
3496                                                     <code>PPLXX</code>\r
3497                                                     <scientific_name>Postia placenta</scientific_name>\r
3498                                                     <synonym>Rhodonia placenta</synonym>\r
3499                                                     <rank>species</rank>\r
3500                                                     <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
3501                                                   </taxonomy>\r
3502                                                 </clade>\r
3503                                               </clade>\r
3504                                               <clade>\r
3505                                                 <name>core polyporoid clade</name>\r
3506                                                 <taxonomy>\r
3507                                                   <common_name>core polyporoid clade</common_name>\r
3508                                                 </taxonomy>\r
3509                                                 <clade>\r
3510                                                   <taxonomy>\r
3511                                                     <id provider="uniprot">5325</id>\r
3512                                                     <code>TRAVE</code>\r
3513                                                     <scientific_name>Trametes versicolor</scientific_name>\r
3514                                                     <authority>(L.) Lloyd 1921</authority>\r
3515                                                     <common_name>White-rot fungus</common_name>\r
3516                                                     <synonym>Coriolus versicolor</synonym>\r
3517                                                     <synonym>Bjerkandera versicolor</synonym>\r
3518                                                     <rank>species</rank>\r
3519                                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg</uri>\r
3520                                                   </taxonomy>\r
3521                                                 </clade>\r
3522                                                 <clade>\r
3523                                                   <taxonomy>\r
3524                                                     <id provider="uniprot">742152</id>\r
3525                                                     <code>WOLCO</code>\r
3526                                                     <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>\r
3527                                                     <common_name>Brown rot fungus</common_name>\r
3528                                                     <synonym>Wolfiporia cocos MD-104 SS10</synonym>\r
3529                                                     <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>\r
3530                                                   </taxonomy>\r
3531                                                 </clade>\r
3532                                               </clade>\r
3533                                             </clade>\r
3534                                             <clade>\r
3535                                               <taxonomy>\r
3536                                                 <id provider="uniprot">42742</id>\r
3537                                                 <code>CERSU</code>\r
3538                                                 <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
3539                                                 <rank>species</rank>\r
3540                                               </taxonomy>\r
3541                                             </clade>\r
3542                                           </clade>\r
3543                                           <clade>\r
3544                                             <taxonomy>\r
3545                                               <id provider="uniprot">732165</id>\r
3546                                               <code>DICSQ</code>\r
3547                                               <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>\r
3548                                               <common_name>Western red white-rot fungus</common_name>\r
3549                                               <synonym>Dichomitus squalens LYAD-421 SS1</synonym>\r
3550                                               <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
3551                                             </taxonomy>\r
3552                                           </clade>\r
3553                                         </clade>\r
3554                                       </clade>\r
3555                                       <clade>\r
3556                                         <taxonomy>\r
3557                                           <id provider="uniprot">13563</id>\r
3558                                           <code>HETAN</code>\r
3559                                           <scientific_name>Heterobasidion annosum</scientific_name>\r
3560                                           <common_name>Root rot fungus</common_name>\r
3561                                           <rank>species</rank>\r
3562                                         </taxonomy>\r
3563                                       </clade>\r
3564                                     </clade>\r
3565                                     <clade>\r
3566                                       <taxonomy>\r
3567                                         <id provider="uniprot">5215</id>\r
3568                                         <scientific_name>Tremellaceae</scientific_name>\r
3569                                         <rank>family</rank>\r
3570                                       </taxonomy>\r
3571                                       <clade>\r
3572                                         <taxonomy>\r
3573                                           <id provider="uniprot">5207</id>\r
3574                                           <code>CRYNE</code>\r
3575                                           <scientific_name>Cryptococcus neoformans</scientific_name>\r
3576                                           <synonym>Filobasidiella neoformans</synonym>\r
3577                                           <rank>species</rank>\r
3578                                         </taxonomy>\r
3579                                       </clade>\r
3580                                       <clade>\r
3581                                         <taxonomy>\r
3582                                           <id provider="eol">1029985</id>\r
3583                                           <code>TREME</code>\r
3584                                           <scientific_name>Tremella mesenterica</scientific_name>\r
3585                                           <authority>Pers. 1800</authority>\r
3586                                           <common_name>Jelly fungus</common_name>\r
3587                                           <synonym>Yellow Brain</synonym>\r
3588                                           <synonym>Tremella lutescens</synonym>\r
3589                                           <rank>species</rank>\r
3590                                         </taxonomy>\r
3591                                       </clade>\r
3592                                     </clade>\r
3593                                   </clade>\r
3594                                   <clade>\r
3595                                     <taxonomy>\r
3596                                       <id provider="uniprot">452284</id>\r
3597                                       <scientific_name>Ustilaginomycotina</scientific_name>\r
3598                                       <rank>subphylum</rank>\r
3599                                     </taxonomy>\r
3600                                     <clade>\r
3601                                       <taxonomy>\r
3602                                         <id provider="uniprot">425265</id>\r
3603                                         <code>MALGO</code>\r
3604                                         <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
3605                                         <common_name>Dandruff-associated fungus</common_name>\r
3606                                       </taxonomy>\r
3607                                     </clade>\r
3608                                     <clade>\r
3609                                       <taxonomy>\r
3610                                         <id provider="uniprot">237631</id>\r
3611                                         <code>USTMA</code>\r
3612                                         <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>\r
3613                                         <common_name>Corn smut fungus</common_name>\r
3614                                         <rank>species</rank>\r
3615                                       </taxonomy>\r
3616                                     </clade>\r
3617                                   </clade>\r
3618                                 </clade>\r
3619                                 <clade>\r
3620                                   <taxonomy>\r
3621                                     <id provider="uniprot">29000</id>\r
3622                                     <scientific_name>Pucciniomycotina</scientific_name>\r
3623                                     <rank>subphylum</rank>\r
3624                                   </taxonomy>\r
3625                                   <clade>\r
3626                                     <taxonomy>\r
3627                                       <id provider="uniprot">5258</id>\r
3628                                       <scientific_name>Pucciniales</scientific_name>\r
3629                                       <common_name>rusts</common_name>\r
3630                                       <rank>order</rank>\r
3631                                     </taxonomy>\r
3632                                     <clade>\r
3633                                       <taxonomy>\r
3634                                         <id provider="uniprot">747676</id>\r
3635                                         <code>MELLP</code>\r
3636                                         <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>\r
3637                                         <authority>Kleb. 1902</authority>\r
3638                                         <common_name>Poplar leaf rust fungus</common_name>\r
3639                                         <synonym>Melampsora larici-populina 98AG31</synonym>\r
3640                                         <synonym>Melampsora laricis-populina 98AG31</synonym>\r
3641                                         <rank>strain</rank>\r
3642                                       </taxonomy>\r
3643                                     </clade>\r
3644                                     <clade>\r
3645                                       <taxonomy>\r
3646                                         <id provider="uniprot">5297</id>\r
3647                                         <code>PUCGR</code>\r
3648                                         <scientific_name>Puccinia graminis</scientific_name>\r
3649                                         <authority>Pers. 1794</authority>\r
3650                                         <common_name>Black stem rust fungus</common_name>\r
3651                                         <rank>species</rank>\r
3652                                       </taxonomy>\r
3653                                     </clade>\r
3654                                   </clade>\r
3655                                   <clade>\r
3656                                     <taxonomy>\r
3657                                       <id provider="uniprot">89013</id>\r
3658                                       <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
3659                                     </taxonomy>\r
3660                                     <clade>\r
3661                                       <taxonomy>\r
3662                                         <id provider="uniprot">29898</id>\r
3663                                         <code>RHOGR</code>\r
3664                                         <scientific_name>Rhodotorula graminis</scientific_name>\r
3665                                         <common_name>Yeast</common_name>\r
3666                                         <rank>species</rank>\r
3667                                       </taxonomy>\r
3668                                     </clade>\r
3669                                     <clade>\r
3670                                       <taxonomy>\r
3671                                         <id provider="uniprot">40563</id>\r
3672                                         <code>SPORO</code>\r
3673                                         <scientific_name>Sporobolomyces roseus</scientific_name>\r
3674                                         <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
3675                                         <rank>species</rank>\r
3676                                       </taxonomy>\r
3677                                     </clade>\r
3678                                   </clade>\r
3679                                 </clade>\r
3680                               </clade>\r
3681                               <clade>\r
3682                                 <taxonomy>\r
3683                                   <id provider="uniprot">671144</id>\r
3684                                   <code>WALSC</code>\r
3685                                   <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>\r
3686                                   <rank>strain</rank>\r
3687                                 </taxonomy>\r
3688                               </clade>\r
3689                             </clade>\r
3690                           </clade>\r
3691                           <clade>\r
3692                             <taxonomy>\r
3693                               <id provider="uniprot">451507</id>\r
3694                               <scientific_name>Mucoromycotina</scientific_name>\r
3695                               <rank>subphylum</rank>\r
3696                             </taxonomy>\r
3697                             <clade>\r
3698                               <taxonomy>\r
3699                                 <id provider="uniprot">34489</id>\r
3700                                 <scientific_name>Mucoraceae</scientific_name>\r
3701                                 <rank>family</rank>\r
3702                               </taxonomy>\r
3703                               <clade>\r
3704                                 <taxonomy>\r
3705                                   <id provider="uniprot">36080</id>\r
3706                                   <code>MUCCI</code>\r
3707                                   <scientific_name>Mucor circinelloides</scientific_name>\r
3708                                   <synonym>Mucor griseo-roseus</synonym>\r
3709                                   <rank>species</rank>\r
3710                                 </taxonomy>\r
3711                               </clade>\r
3712                               <clade>\r
3713                                 <taxonomy>\r
3714                                   <id provider="uniprot">4837</id>\r
3715                                   <code>PHYBL</code>\r
3716                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>\r
3717                                   <rank>species</rank>\r
3718                                 </taxonomy>\r
3719                               </clade>\r
3720                               <clade>\r
3721                                 <taxonomy>\r
3722                                   <id provider="uniprot">64495</id>\r
3723                                   <code>RHIOR</code>\r
3724                                   <scientific_name>Rhizopus oryzae</scientific_name>\r
3725                                   <common_name>Mucormycosis agent</common_name>\r
3726                                   <synonym>Rhizopus delemar</synonym>\r
3727                                   <synonym>Rhizopus arrhizus var. delemar</synonym>\r
3728                                   <rank>species</rank>\r
3729                                 </taxonomy>\r
3730                               </clade>\r
3731                             </clade>\r
3732                             <clade>\r
3733                               <taxonomy>\r
3734                                 <id provider="uniprot">1069443</id>\r
3735                                 <code>MVNXX</code>\r
3736                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>\r
3737                                 <rank>species</rank>\r
3738                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>\r
3739                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
3740                               </taxonomy>\r
3741                             </clade>\r
3742                           </clade>\r
3743                         </clade>\r
3744                         <clade>\r
3745                           <taxonomy>\r
3746                             <id provider="uniprot">61392</id>\r
3747                             <code>CREXX</code>\r
3748                             <scientific_name>Coemansia reversa</scientific_name>\r
3749                             <rank>species</rank>\r
3750                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>\r
3751                           </taxonomy>\r
3752                         </clade>\r
3753                       </clade>\r
3754                       <clade>\r
3755                         <taxonomy>\r
3756                           <id provider="uniprot">28583</id>\r
3757                           <code>ALLMA</code>\r
3758                           <scientific_name>Allomyces macrogynus</scientific_name>\r
3759                           <rank>species</rank>\r
3760                         </taxonomy>\r
3761                       </clade>\r
3762                     </clade>\r
3763                     <clade>\r
3764                       <taxonomy>\r
3765                         <id provider="uniprot">4761</id>\r
3766                         <scientific_name>Chytridiomycota</scientific_name>\r
3767                         <common_name>chytrids</common_name>\r
3768                         <synonym>Mastigomycotina</synonym>\r
3769                         <rank>phylum</rank>\r
3770                       </taxonomy>\r
3771                       <clade>\r
3772                         <taxonomy>\r
3773                           <id provider="uniprot">451435</id>\r
3774                           <scientific_name>Chytridiomycetes</scientific_name>\r
3775                           <rank>class</rank>\r
3776                         </taxonomy>\r
3777                         <clade>\r
3778                           <taxonomy>\r
3779                             <id provider="uniprot">684364</id>\r
3780                             <code>BATDJ</code>\r
3781                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>\r
3782                             <common_name>Frog chytrid fungus</common_name>\r
3783                             <rank>strain</rank>\r
3784                           </taxonomy>\r
3785                         </clade>\r
3786                         <clade>\r
3787                           <taxonomy>\r
3788                             <id provider="uniprot">109760</id>\r
3789                             <code>SPIPN</code>\r
3790                             <scientific_name>Spizellomyces punctatus</scientific_name>\r
3791                             <rank>species</rank>\r
3792                           </taxonomy>\r
3793                         </clade>\r
3794                       </clade>\r
3795                       <clade>\r
3796                         <taxonomy>\r
3797                           <id provider="uniprot">1123529</id>\r
3798                           <code>GONPR</code>\r
3799                           <scientific_name>Gonapodya prolifera</scientific_name>\r
3800                           <authority>A. Fisch. 1892</authority>\r
3801                           <common_name>Aquatic fungus</common_name>\r
3802                           <rank>species</rank>\r
3803                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
3804                         </taxonomy>\r
3805                       </clade>\r
3806                     </clade>\r
3807                   </clade>\r
3808                   <clade>\r
3809                     <taxonomy>\r
3810                       <id provider="uniprot">73868</id>\r
3811                       <code>PIRSE</code>\r
3812                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>\r
3813                       <rank>species</rank>\r
3814                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
3815                     </taxonomy>\r
3816                   </clade>\r
3817                 </clade>\r
3818                 <clade>\r
3819                   <taxonomy>\r
3820                     <id provider="uniprot">6029</id>\r
3821                     <scientific_name>Microsporidia</scientific_name>\r
3822                     <rank>phylum</rank>\r
3823                   </taxonomy>\r
3824                   <reference>\r
3825                     <desc>Disseminated Infection Caused by Novel Species of Microsporidium, Thailand</desc>\r
3826                   </reference>\r
3827                   <clade>\r
3828                     <taxonomy>\r
3829                       <id provider="uniprot">6032</id>\r
3830                       <scientific_name>Apansporoblastina</scientific_name>\r
3831                       <rank>suborder</rank>\r
3832                     </taxonomy>\r
3833                     <clade>\r
3834                       <taxonomy>\r
3835                         <id provider="uniprot">6033</id>\r
3836                         <scientific_name>Encephalitozoon</scientific_name>\r
3837                         <rank>genus</rank>\r
3838                       </taxonomy>\r
3839                       <clade>\r
3840                         <taxonomy>\r
3841                           <id provider="uniprot">284813</id>\r
3842                           <code>ENCCU</code>\r
3843                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>\r
3844                           <common_name>Microsporidian parasite</common_name>\r
3845                           <rank>strain</rank>\r
3846                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>\r
3847                         </taxonomy>\r
3848                       </clade>\r
3849                       <clade>\r
3850                         <taxonomy>\r
3851                           <id provider="uniprot">907965</id>\r
3852                           <code>ENCHA</code>\r
3853                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>\r
3854                           <common_name>Microsporidian parasite</common_name>\r
3855                           <rank>strain</rank>\r
3856                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>\r
3857                         </taxonomy>\r
3858                       </clade>\r
3859                     </clade>\r
3860                     <clade>\r
3861                       <name>Nosematidae &amp; Enterocytozoonidae</name>\r
3862                       <clade>\r
3863                         <taxonomy>\r
3864                           <id provider="uniprot">993615</id>\r
3865                           <code>VITCO</code>\r
3866                           <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>\r
3867                           <common_name>Microsporidian parasite</common_name>\r
3868                           <synonym>Nosema corneum</synonym>\r
3869                         </taxonomy>\r
3870                       </clade>\r
3871                       <clade>\r
3872                         <taxonomy>\r
3873                           <id provider="uniprot">481877</id>\r
3874                           <code>ENTBH</code>\r
3875                           <scientific_name>Enterocytozoon bieneusi (strain H348)</scientific_name>\r
3876                           <common_name>Microsporidian parasite</common_name>\r
3877                           <uri>http://www.biolib.cz/IMG/GAL/17310.jpg</uri>\r
3878                         </taxonomy>\r
3879                       </clade>\r
3880                     </clade>\r
3881                   </clade>\r
3882                   <clade>\r
3883                     <taxonomy>\r
3884                       <id provider="uniprot">35232</id>\r
3885                       <scientific_name>Pleistophoridae</scientific_name>\r
3886                       <rank>family</rank>\r
3887                     </taxonomy>\r
3888                     <clade>\r
3889                       <taxonomy>\r
3890                         <id provider="uniprot">72359</id>\r
3891                         <code>TRAHO</code>\r
3892                         <scientific_name>Trachipleistophora hominis</scientific_name>\r
3893                         <common_name>Microsporidian parasite</common_name>\r
3894                         <rank>species</rank>\r
3895                       </taxonomy>\r
3896                     </clade>\r
3897                     <clade>\r
3898                       <taxonomy>\r
3899                         <id provider="uniprot">948595</id>\r
3900                         <code>VAVCU</code>\r
3901                         <scientific_name>Vavraia culicis (isolate floridensis)</scientific_name>\r
3902                         <common_name>Microsporidian parasite</common_name>\r
3903                       </taxonomy>\r
3904                     </clade>\r
3905                   </clade>\r
3906                   <clade>\r
3907                     <taxonomy>\r
3908                       <id provider="uniprot">1003232</id>\r
3909                       <code>EDHAE</code>\r
3910                       <scientific_name>Edhazardia aedis (strain USNM 41457)</scientific_name>\r
3911                       <common_name>Microsporidian parasite</common_name>\r
3912                       <uri>http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg</uri>\r
3913                     </taxonomy>\r
3914                   </clade>\r
3915                 </clade>\r
3916               </clade>\r
3917               <clade>\r
3918                 <taxonomy>\r
3919                   <id provider="uniprot">1001604</id>\r
3920                   <scientific_name>Nucleariidae and Fonticula group</scientific_name>\r
3921                 </taxonomy>\r
3922                 <reference doi="10.1093/molbev/msp185">\r
3923                   <desc>Phylogeny of the ï¿½Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta</desc>\r
3924                 </reference>\r
3925                 <clade>\r
3926                   <taxonomy>\r
3927                     <id provider="uniprot">691883</id>\r
3928                     <code>FALXX</code>\r
3929                     <scientific_name>Fonticula alba</scientific_name>\r
3930                     <authority>Worley, Raper &amp; Hohl. 1979</authority>\r
3931                     <rank>species</rank>\r
3932                     <uri>http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif</uri>\r
3933                   </taxonomy>\r
3934                 </clade>\r
3935                 <clade>\r
3936                   <taxonomy>\r
3937                     <id provider="uniprot">154970</id>\r
3938                     <scientific_name>Nuclearia simplex</scientific_name>\r
3939                     <rank>species</rank>\r
3940                   </taxonomy>\r
3941                 </clade>\r
3942               </clade>\r
3943             </clade>\r
3944           </clade>\r
3945           <clade>\r
3946             <taxonomy>\r
3947               <id provider="uniprot">554915</id>\r
3948               <scientific_name>Amoebozoa</scientific_name>\r
3949             </taxonomy>\r
3950             <clade>\r
3951               <taxonomy>\r
3952                 <id provider="uniprot">33083</id>\r
3953                 <scientific_name>Dictyosteliida</scientific_name>\r
3954                 <common_name>dictyostelid cellular slime molds</common_name>\r
3955                 <rank>order</rank>\r
3956               </taxonomy>\r
3957               <clade>\r
3958                 <taxonomy>\r
3959                   <id provider="uniprot">5782</id>\r
3960                   <scientific_name>Dictyostelium</scientific_name>\r
3961                   <rank>genus</rank>\r
3962                 </taxonomy>\r
3963                 <reference doi="10.1186/1471-2148-11-84">\r
3964                   <desc>An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns</desc>\r
3965                 </reference>\r
3966                 <reference>\r
3967                 </reference>\r
3968                 <reference>\r
3969                 </reference>\r
3970                 <clade>\r
3971                   <name>group 4</name>\r
3972                   <clade>\r
3973                     <taxonomy>\r
3974                       <id provider="uniprot">44689</id>\r
3975                       <code>DICDI</code>\r
3976                       <scientific_name>Dictyostelium discoideum</scientific_name>\r
3977                       <common_name>Slime mold</common_name>\r
3978                       <rank>species</rank>\r
3979                       <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>\r
3980                     </taxonomy>\r
3981                   </clade>\r
3982                   <clade>\r
3983                     <taxonomy>\r
3984                       <id provider="uniprot">5786</id>\r
3985                       <code>DICPU</code>\r
3986                       <scientific_name>Dictyostelium purpureum</scientific_name>\r
3987                       <common_name>Slime mold</common_name>\r
3988                       <rank>species</rank>\r
3989                     </taxonomy>\r
3990                   </clade>\r
3991                 </clade>\r
3992                 <clade>\r
3993                   <taxonomy>\r
3994                     <id provider="uniprot">1054147</id>\r
3995                     <code>DICFS</code>\r
3996                     <scientific_name>Dictyostelium fasciculatum (strain SH3)</scientific_name>\r
3997                     <common_name>Slime mold</common_name>\r
3998                     <rank>strain</rank>\r
3999                   </taxonomy>\r
4000                 </clade>\r
4001               </clade>\r
4002               <clade>\r
4003                 <taxonomy>\r
4004                   <id provider="uniprot">13642</id>\r
4005                   <code>POLPA</code>\r
4006                   <scientific_name>Polysphondylium pallidum</scientific_name>\r
4007                   <common_name>Cellular slime mold</common_name>\r
4008                   <rank>species</rank>\r
4009                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>\r
4010                 </taxonomy>\r
4011               </clade>\r
4012             </clade>\r
4013             <clade>\r
4014               <taxonomy>\r
4015                 <id provider="uniprot">5758</id>\r
4016                 <scientific_name>Entamoeba</scientific_name>\r
4017                 <rank>genus</rank>\r
4018               </taxonomy>\r
4019               <clade>\r
4020                 <taxonomy>\r
4021                   <id provider="uniprot">5759</id>\r
4022                   <code>ENTHI</code>\r
4023                   <scientific_name>Entamoeba histolytica</scientific_name>\r
4024                   <rank>species</rank>\r
4025                   <uri>http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg</uri>\r
4026                 </taxonomy>\r
4027               </clade>\r
4028               <clade>\r
4029                 <taxonomy>\r
4030                   <id provider="uniprot">370354</id>\r
4031                   <code>ENTDS</code>\r
4032                   <scientific_name>Entamoeba dispar (strain ATCC PRA-260 / SAW760)</scientific_name>\r
4033                 </taxonomy>\r
4034               </clade>\r
4035             </clade>\r
4036           </clade>\r
4037         </clade>\r
4038         <clade>\r
4039           <name>Bikonta</name>\r
4040           <reference doi="10.1099/ijs.0.63216-0">\r
4041           </reference>\r
4042           <clade>\r
4043             <name>Plants+HC+SAR megagroup</name>\r
4044             <clade>\r
4045               <name>Plants+HC</name>\r
4046               <clade>\r
4047                 <name>Archaeplastida</name>\r
4048                 <clade>\r
4049                   <taxonomy>\r
4050                     <id provider="uniprot">33090</id>\r
4051                     <scientific_name>Viridiplantae</scientific_name>\r
4052                     <common_name>green plants</common_name>\r
4053                     <rank>kingdom</rank>\r
4054                   </taxonomy>\r
4055                   <clade>\r
4056                     <taxonomy>\r
4057                       <id provider="uniprot">3193</id>\r
4058                       <scientific_name>Embryophyta</scientific_name>\r
4059                     </taxonomy>\r
4060                     <clade>\r
4061                       <taxonomy>\r
4062                         <id provider="uniprot">58023</id>\r
4063                         <scientific_name>Tracheophyta</scientific_name>\r
4064                         <common_name>vascular plants</common_name>\r
4065                       </taxonomy>\r
4066                       <clade>\r
4067                         <taxonomy>\r
4068                           <id provider="uniprot">58024</id>\r
4069                           <scientific_name>Spermatophyta</scientific_name>\r
4070                           <common_name>seed plants</common_name>\r
4071                         </taxonomy>\r
4072                         <clade>\r
4073                           <taxonomy>\r
4074                             <id provider="uniprot">3398</id>\r
4075                             <scientific_name>Magnoliophyta</scientific_name>\r
4076                             <common_name>flowering plants</common_name>\r
4077                             <synonym>Angiospermae</synonym>\r
4078                           </taxonomy>\r
4079                           <clade>\r
4080                             <taxonomy>\r
4081                               <id provider="uniprot">71240</id>\r
4082                               <scientific_name>eudicotyledons</scientific_name>\r
4083                             </taxonomy>\r
4084                             <clade>\r
4085                               <taxonomy>\r
4086                                 <id provider="uniprot">91827</id>\r
4087                                 <scientific_name>core eudicotyledons</scientific_name>\r
4088                               </taxonomy>\r
4089                               <clade>\r
4090                                 <taxonomy>\r
4091                                   <id provider="uniprot">71275</id>\r
4092                                   <scientific_name>rosids</scientific_name>\r
4093                                   <rank>subclass</rank>\r
4094                                 </taxonomy>\r
4095                                 <clade>\r
4096                                   <name>fabids &amp; malvids</name>\r
4097                                   <clade>\r
4098                                     <taxonomy>\r
4099                                       <id provider="uniprot">91835</id>\r
4100                                       <scientific_name>fabids</scientific_name>\r
4101                                     </taxonomy>\r
4102                                     <clade>\r
4103                                       <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
4104                                       <clade>\r
4105                                         <name>Rosales &amp; Cucurbitales</name>\r
4106                                         <clade>\r
4107                                           <taxonomy>\r
4108                                             <id provider="uniprot">3745</id>\r
4109                                             <scientific_name>Rosaceae</scientific_name>\r
4110                                             <rank>family</rank>\r
4111                                           </taxonomy>\r
4112                                           <clade>\r
4113                                             <taxonomy>\r
4114                                               <id provider="uniprot">57918</id>\r
4115                                               <code>FRAVE</code>\r
4116                                               <scientific_name>Fragaria vesca</scientific_name>\r
4117                                               <common_name>Woodland strawberry</common_name>\r
4118                                               <synonym>Fragaria vesca L.</synonym>\r
4119                                               <synonym>European strawberry</synonym>\r
4120                                               <synonym>alpine strawberry</synonym>\r
4121                                               <rank>species</rank>\r
4122                                               <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>\r
4123                                               <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>\r
4124                                             </taxonomy>\r
4125                                           </clade>\r
4126                                           <clade>\r
4127                                             <taxonomy>\r
4128                                               <id provider="uniprot">3760</id>\r
4129                                               <code>PRUPE</code>\r
4130                                               <scientific_name>Prunus persica</scientific_name>\r
4131                                               <common_name>Peach</common_name>\r
4132                                               <synonym>Persica vulgaris</synonym>\r
4133                                               <synonym>Amygdalus persica</synonym>\r
4134                                               <rank>species</rank>\r
4135                                               <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
4136                                             </taxonomy>\r
4137                                           </clade>\r
4138                                         </clade>\r
4139                                         <clade>\r
4140                                           <taxonomy>\r
4141                                             <id provider="uniprot">3659</id>\r
4142                                             <code>CUCSA</code>\r
4143                                             <scientific_name>Cucumis sativus</scientific_name>\r
4144                                             <common_name>Cucumber</common_name>\r
4145                                             <rank>species</rank>\r
4146                                           </taxonomy>\r
4147                                         </clade>\r
4148                                       </clade>\r
4149                                       <clade>\r
4150                                         <taxonomy>\r
4151                                           <id provider="uniprot">3814</id>\r
4152                                           <scientific_name>Papilionoideae</scientific_name>\r
4153                                           <rank>subfamily</rank>\r
4154                                         </taxonomy>\r
4155                                         <clade>\r
4156                                           <taxonomy>\r
4157                                             <id provider="uniprot">3847</id>\r
4158                                             <code>SOYBN</code>\r
4159                                             <scientific_name>Glycine max</scientific_name>\r
4160                                             <authority>cv. Wye</authority>\r
4161                                             <common_name>Soybean</common_name>\r
4162                                             <synonym>Glycine hispida</synonym>\r
4163                                             <rank>species</rank>\r
4164                                           </taxonomy>\r
4165                                         </clade>\r
4166                                         <clade>\r
4167                                           <taxonomy>\r
4168                                             <id provider="uniprot">3880</id>\r
4169                                             <code>MEDTR</code>\r
4170                                             <scientific_name>Medicago truncatula</scientific_name>\r
4171                                             <common_name>Barrel medic</common_name>\r
4172                                             <synonym>Medicago tribuloides</synonym>\r
4173                                             <rank>species</rank>\r
4174                                             <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
4175                                           </taxonomy>\r
4176                                         </clade>\r
4177                                       </clade>\r
4178                                     </clade>\r
4179                                     <clade>\r
4180                                       <taxonomy>\r
4181                                         <id provider="uniprot">3646</id>\r
4182                                         <scientific_name>Malpighiales</scientific_name>\r
4183                                         <rank>order</rank>\r
4184                                       </taxonomy>\r
4185                                       <clade>\r
4186                                         <taxonomy>\r
4187                                           <id provider="uniprot">3977</id>\r
4188                                           <scientific_name>Euphorbiaceae</scientific_name>\r
4189                                           <rank>family</rank>\r
4190                                         </taxonomy>\r
4191                                         <clade>\r
4192                                           <taxonomy>\r
4193                                             <id provider="uniprot">3983</id>\r
4194                                             <code>MANES</code>\r
4195                                             <scientific_name>Manihot esculenta</scientific_name>\r
4196                                             <common_name>Tapioca</common_name>\r
4197                                             <synonym>Jatropha manihot</synonym>\r
4198                                             <rank>species</rank>\r
4199                                             <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
4200                                           </taxonomy>\r
4201                                         </clade>\r
4202                                         <clade>\r
4203                                           <taxonomy>\r
4204                                             <id provider="uniprot">3988</id>\r
4205                                             <code>RICCO</code>\r
4206                                             <scientific_name>Ricinus communis</scientific_name>\r
4207                                             <common_name>Castor bean</common_name>\r
4208                                             <synonym>Ricinus sanguineus</synonym>\r
4209                                             <rank>species</rank>\r
4210                                             <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
4211                                           </taxonomy>\r
4212                                         </clade>\r
4213                                       </clade>\r
4214                                       <clade>\r
4215                                         <taxonomy>\r
4216                                           <id provider="uniprot">3694</id>\r
4217                                           <code>POPTR</code>\r
4218                                           <scientific_name>Populus trichocarpa</scientific_name>\r
4219                                           <common_name>Western balsam poplar</common_name>\r
4220                                           <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
4221                                           <rank>species</rank>\r
4222                                         </taxonomy>\r
4223                                       </clade>\r
4224                                     </clade>\r
4225                                   </clade>\r
4226                                   <clade>\r
4227                                     <taxonomy>\r
4228                                       <id provider="uniprot">91836</id>\r
4229                                       <scientific_name>malvids</scientific_name>\r
4230                                     </taxonomy>\r
4231                                     <clade>\r
4232                                       <name>Brassicales &amp; Sapindales</name>\r
4233                                       <clade>\r
4234                                         <taxonomy>\r
4235                                           <id provider="uniprot">3699</id>\r
4236                                           <scientific_name>Brassicales</scientific_name>\r
4237                                           <rank>order</rank>\r
4238                                         </taxonomy>\r
4239                                         <clade>\r
4240                                           <taxonomy>\r
4241                                             <id provider="uniprot">3700</id>\r
4242                                             <scientific_name>Brassicaceae</scientific_name>\r
4243                                             <rank>family</rank>\r
4244                                           </taxonomy>\r
4245                                           <clade>\r
4246                                             <taxonomy>\r
4247                                               <id provider="uniprot">3701</id>\r
4248                                               <scientific_name>Arabidopsis</scientific_name>\r
4249                                               <rank>genus</rank>\r
4250                                             </taxonomy>\r
4251                                             <clade>\r
4252                                               <taxonomy>\r
4253                                                 <id provider="uniprot">59689</id>\r
4254                                                 <code>ARALY</code>\r
4255                                                 <scientific_name>Arabidopsis lyrata</scientific_name>\r
4256                                                 <common_name>Lyre-leaved rock-cress</common_name>\r
4257                                                 <synonym>Arabis lyrata</synonym>\r
4258                                                 <rank>species</rank>\r
4259                                               </taxonomy>\r
4260                                             </clade>\r
4261                                             <clade>\r
4262                                               <taxonomy>\r
4263                                                 <id provider="uniprot">3702</id>\r
4264                                                 <code>ARATH</code>\r
4265                                                 <scientific_name>Arabidopsis thaliana</scientific_name>\r
4266                                                 <common_name>Mouse-ear cress</common_name>\r
4267                                                 <rank>species</rank>\r
4268                                               </taxonomy>\r
4269                                             </clade>\r
4270                                           </clade>\r
4271                                           <clade>\r
4272                                             <taxonomy>\r
4273                                               <id provider="uniprot">98038</id>\r
4274                                               <code>THEHA</code>\r
4275                                               <scientific_name>Thellungiella halophila</scientific_name>\r
4276                                               <common_name>Salt cress</common_name>\r
4277                                               <rank>species</rank>\r
4278                                               <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>\r
4279                                             </taxonomy>\r
4280                                           </clade>\r
4281                                         </clade>\r
4282                                         <clade>\r
4283                                           <taxonomy>\r
4284                                             <id provider="uniprot">3649</id>\r
4285                                             <code>CARPA</code>\r
4286                                             <scientific_name>Carica papaya</scientific_name>\r
4287                                             <common_name>Papaya</common_name>\r
4288                                             <rank>species</rank>\r
4289                                             <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
4290                                             <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
4291                                           </taxonomy>\r
4292                                         </clade>\r
4293                                       </clade>\r
4294                                       <clade>\r
4295                                         <taxonomy>\r
4296                                           <id provider="uniprot">2706</id>\r
4297                                           <scientific_name>Citrus</scientific_name>\r
4298                                           <rank>genus</rank>\r
4299                                         </taxonomy>\r
4300                                         <clade>\r
4301                                           <taxonomy>\r
4302                                             <id provider="uniprot">85681</id>\r
4303                                             <code>CCLXX</code>\r
4304                                             <scientific_name>Citrus clementina</scientific_name>\r
4305                                             <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
4306                                             <rank>species</rank>\r
4307                                             <uri>http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg</uri>\r
4308                                           </taxonomy>\r
4309                                         </clade>\r
4310                                         <clade>\r
4311                                           <taxonomy>\r
4312                                             <id provider="uniprot">2711</id>\r
4313                                             <code>CITSI</code>\r
4314                                             <scientific_name>Citrus sinensis</scientific_name>\r
4315                                             <common_name>Sweet orange</common_name>\r
4316                                             <synonym>Citrus x sinensis</synonym>\r
4317                                             <synonym>Citrus aurantium var. sinensis</synonym>\r
4318                                             <rank>species</rank>\r
4319                                             <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
4320                                           </taxonomy>\r
4321                                         </clade>\r
4322                                       </clade>\r
4323                                     </clade>\r
4324                                     <clade>\r
4325                                       <taxonomy>\r
4326                                         <id provider="uniprot">71139</id>\r
4327                                         <code>EUCGR</code>\r
4328                                         <scientific_name>Eucalyptus grandis</scientific_name>\r
4329                                         <common_name>Flooded gum</common_name>\r
4330                                         <rank>species</rank>\r
4331                                         <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
4332                                       </taxonomy>\r
4333                                     </clade>\r
4334                                   </clade>\r
4335                                 </clade>\r
4336                                 <clade>\r
4337                                   <taxonomy>\r
4338                                     <id provider="eol">582304</id>\r
4339                                     <code>VITVI</code>\r
4340                                     <scientific_name>Vitis vinifera</scientific_name>\r
4341                                     <common_name>Grape</common_name>\r
4342                                     <rank>species</rank>\r
4343                                   </taxonomy>\r
4344                                 </clade>\r
4345                               </clade>\r
4346                               <clade>\r
4347                                 <taxonomy>\r
4348                                   <id provider="uniprot">91888</id>\r
4349                                   <scientific_name>lamiids</scientific_name>\r
4350                                 </taxonomy>\r
4351                                 <clade>\r
4352                                   <taxonomy>\r
4353                                     <id provider="uniprot">4070</id>\r
4354                                     <scientific_name>Solanaceae</scientific_name>\r
4355                                     <rank>family</rank>\r
4356                                   </taxonomy>\r
4357                                   <clade>\r
4358                                     <taxonomy>\r
4359                                       <id provider="uniprot">4107</id>\r
4360                                       <scientific_name>Solanum</scientific_name>\r
4361                                       <rank>genus</rank>\r
4362                                     </taxonomy>\r
4363                                     <clade>\r
4364                                       <taxonomy>\r
4365                                         <id provider="uniprot">49274</id>\r
4366                                         <scientific_name>Lycopersicon</scientific_name>\r
4367                                         <rank>subgenus</rank>\r
4368                                       </taxonomy>\r
4369                                       <clade>\r
4370                                         <taxonomy>\r
4371                                           <id provider="uniprot">4081</id>\r
4372                                           <code>SOLLC</code>\r
4373                                           <scientific_name>Solanum lycopersicum</scientific_name>\r
4374                                           <common_name>Tomato</common_name>\r
4375                                           <synonym>Lycopersicon esculentum</synonym>\r
4376                                           <rank>species</rank>\r
4377                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
4378                                         </taxonomy>\r
4379                                       </clade>\r
4380                                       <clade>\r
4381                                         <taxonomy>\r
4382                                           <id provider="uniprot">4084</id>\r
4383                                           <code>SOLPI</code>\r
4384                                           <scientific_name>Solanum pimpinellifolium</scientific_name>\r
4385                                           <common_name>Currant tomato</common_name>\r
4386                                           <synonym>Lycopersicon pimpinellifolium</synonym>\r
4387                                           <rank>species</rank>\r
4388                                           <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>\r
4389                                         </taxonomy>\r
4390                                       </clade>\r
4391                                     </clade>\r
4392                                     <clade>\r
4393                                       <taxonomy>\r
4394                                         <id provider="uniprot">4113</id>\r
4395                                         <code>SOLTU</code>\r
4396                                         <scientific_name>Solanum tuberosum</scientific_name>\r
4397                                         <common_name>Potato</common_name>\r
4398                                         <rank>species</rank>\r
4399                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>\r
4400                                       </taxonomy>\r
4401                                     </clade>\r
4402                                   </clade>\r
4403                                   <clade>\r
4404                                     <taxonomy>\r
4405                                       <id provider="uniprot">4097</id>\r
4406                                       <code>TOBAC</code>\r
4407                                       <scientific_name>Nicotiana tabacum</scientific_name>\r
4408                                       <common_name>Common tobacco</common_name>\r
4409                                       <rank>species</rank>\r
4410                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
4411                                     </taxonomy>\r
4412                                   </clade>\r
4413                                 </clade>\r
4414                                 <clade>\r
4415                                   <taxonomy>\r
4416                                     <id provider="uniprot">4155</id>\r
4417                                     <code>MIMGU</code>\r
4418                                     <scientific_name>Mimulus guttatus</scientific_name>\r
4419                                     <common_name>Yellow monkey flower</common_name>\r
4420                                     <synonym>Yellow monkey flower</synonym>\r
4421                                     <rank>species</rank>\r
4422                                   </taxonomy>\r
4423                                 </clade>\r
4424                               </clade>\r
4425                             </clade>\r
4426                             <clade>\r
4427                               <taxonomy>\r
4428                                 <id provider="uniprot">218851</id>\r
4429                                 <code>AQUCA</code>\r
4430                                 <scientific_name>Aquilegia caerulea</scientific_name>\r
4431                                 <authority>E.James</authority>\r
4432                                 <common_name>Rocky mountain columbine</common_name>\r
4433                                 <synonym>Aquilegia coerulea</synonym>\r
4434                                 <rank>species</rank>\r
4435                                 <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>\r
4436                               </taxonomy>\r
4437                             </clade>\r
4438                           </clade>\r
4439                           <clade>\r
4440                             <taxonomy>\r
4441                               <id provider="uniprot">4447</id>\r
4442                               <scientific_name>Liliopsida</scientific_name>\r
4443                               <common_name>monocots</common_name>\r
4444                               <synonym>Monocotyledoneae</synonym>\r
4445                               <rank>class</rank>\r
4446                             </taxonomy>\r
4447                             <clade>\r
4448                               <taxonomy>\r
4449                                 <id provider="uniprot">4479</id>\r
4450                                 <scientific_name>Poaceae</scientific_name>\r
4451                                 <common_name>grass family</common_name>\r
4452                                 <synonym>Gramineae</synonym>\r
4453                                 <rank>family</rank>\r
4454                               </taxonomy>\r
4455                               <clade>\r
4456                                 <taxonomy>\r
4457                                   <id provider="uniprot">147369</id>\r
4458                                   <scientific_name>Panicoideae</scientific_name>\r
4459                                   <authority>Link, 1827</authority>\r
4460                                   <synonym>Centothecoideae</synonym>\r
4461                                   <rank>subfamily</rank>\r
4462                                 </taxonomy>\r
4463                                 <clade>\r
4464                                   <taxonomy>\r
4465                                     <id provider="uniprot">147429</id>\r
4466                                     <scientific_name>Andropogoneae</scientific_name>\r
4467                                     <authority>Dumort., 1824</authority>\r
4468                                     <rank>tribe</rank>\r
4469                                   </taxonomy>\r
4470                                   <clade>\r
4471                                     <taxonomy>\r
4472                                       <id provider="uniprot">4558</id>\r
4473                                       <code>SORBI</code>\r
4474                                       <scientific_name>Sorghum bicolor</scientific_name>\r
4475                                       <common_name>Sorghum</common_name>\r
4476                                       <synonym>Sorghum vulgare</synonym>\r
4477                                       <rank>species</rank>\r
4478                                     </taxonomy>\r
4479                                   </clade>\r
4480                                   <clade>\r
4481                                     <taxonomy>\r
4482                                       <id provider="uniprot">4577</id>\r
4483                                       <code>MAIZE</code>\r
4484                                       <scientific_name>Zea mays</scientific_name>\r
4485                                       <common_name>Maize</common_name>\r
4486                                       <rank>species</rank>\r
4487                                     </taxonomy>\r
4488                                   </clade>\r
4489                                 </clade>\r
4490                                 <clade>\r
4491                                   <taxonomy>\r
4492                                     <id provider="uniprot">147428</id>\r
4493                                     <scientific_name>Paniceae</scientific_name>\r
4494                                     <rank>tribe</rank>\r
4495                                   </taxonomy>\r
4496                                   <clade>\r
4497                                     <taxonomy>\r
4498                                       <id provider="uniprot">38727</id>\r
4499                                       <code>PANVG</code>\r
4500                                       <scientific_name>Panicum virgatum</scientific_name>\r
4501                                       <common_name>switchgrass</common_name>\r
4502                                       <rank>species</rank>\r
4503                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
4504                                     </taxonomy>\r
4505                                   </clade>\r
4506                                   <clade>\r
4507                                     <taxonomy>\r
4508                                       <id provider="uniprot">4555</id>\r
4509                                       <code>SETIT</code>\r
4510                                       <scientific_name>Setaria italica</scientific_name>\r
4511                                       <common_name>Foxtail millet</common_name>\r
4512                                       <synonym>Panicum italicum</synonym>\r
4513                                       <rank>species</rank>\r
4514                                       <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
4515                                     </taxonomy>\r
4516                                   </clade>\r
4517                                 </clade>\r
4518                               </clade>\r
4519                               <clade>\r
4520                                 <taxonomy>\r
4521                                   <id provider="uniprot">359160</id>\r
4522                                   <scientific_name>BEP clade</scientific_name>\r
4523                                 </taxonomy>\r
4524                                 <clade>\r
4525                                   <taxonomy>\r
4526                                     <id provider="uniprot">4527</id>\r
4527                                     <scientific_name>Oryza</scientific_name>\r
4528                                     <rank>genus</rank>\r
4529                                   </taxonomy>\r
4530                                   <clade>\r
4531                                     <taxonomy>\r
4532                                       <id provider="uniprot">4530</id>\r
4533                                       <code>ORYSA</code>\r
4534                                       <scientific_name>Oryza sativa</scientific_name>\r
4535                                       <common_name>Rice</common_name>\r
4536                                       <rank>species</rank>\r
4537                                     </taxonomy>\r
4538                                   </clade>\r
4539                                   <clade>\r
4540                                     <taxonomy>\r
4541                                       <id provider="uniprot">39947</id>\r
4542                                       <code>ORYSJ</code>\r
4543                                       <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
4544                                       <common_name>Rice</common_name>\r
4545                                     </taxonomy>\r
4546                                   </clade>\r
4547                                 </clade>\r
4548                                 <clade>\r
4549                                   <taxonomy>\r
4550                                     <id provider="uniprot">147368</id>\r
4551                                     <scientific_name>Pooideae</scientific_name>\r
4552                                     <rank>subfamily</rank>\r
4553                                   </taxonomy>\r
4554                                   <clade>\r
4555                                     <taxonomy>\r
4556                                       <id provider="uniprot">15368</id>\r
4557                                       <code>BRADI</code>\r
4558                                       <scientific_name>Brachypodium distachyon</scientific_name>\r
4559                                       <common_name>Purple false brome</common_name>\r
4560                                       <synonym>Trachynia distachya</synonym>\r
4561                                       <rank>species</rank>\r
4562                                       <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>\r
4563                                     </taxonomy>\r
4564                                   </clade>\r
4565                                   <clade>\r
4566                                     <taxonomy>\r
4567                                       <id provider="uniprot">112509</id>\r
4568                                       <code>HORVD</code>\r
4569                                       <scientific_name>Hordeum vulgare var. distichum</scientific_name>\r
4570                                       <common_name>Two-rowed barley</common_name>\r
4571                                       <rank>subspecies</rank>\r
4572                                       <uri>http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg</uri>\r
4573                                     </taxonomy>\r
4574                                   </clade>\r
4575                                 </clade>\r
4576                               </clade>\r
4577                             </clade>\r
4578                             <clade>\r
4579                               <taxonomy>\r
4580                                 <id provider="uniprot">214687</id>\r
4581                                 <code>MUSAM</code>\r
4582                                 <scientific_name>Musa acuminata subsp. malaccensis</scientific_name>\r
4583                                 <authority>(Ridl.) N.W.Simmonds</authority>\r
4584                                 <common_name>Wild banana</common_name>\r
4585                                 <synonym>Musa malaccensis</synonym>\r
4586                                 <rank>subspecies</rank>\r
4587                                 <uri>http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg</uri>\r
4588                               </taxonomy>\r
4589                             </clade>\r
4590                           </clade>\r
4591                         </clade>\r
4592                         <clade>\r
4593                           <taxonomy>\r
4594                             <id provider="uniprot">3329</id>\r
4595                             <code>PICAB</code>\r
4596                             <scientific_name>Picea abies</scientific_name>\r
4597                             <authority>H.Karst</authority>\r
4598                             <common_name>Norway spruce</common_name>\r
4599                             <synonym>Picea excelsa</synonym>\r
4600                             <rank>species</rank>\r
4601                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>\r
4602                           </taxonomy>\r
4603                         </clade>\r
4604                       </clade>\r
4605                       <clade>\r
4606                         <taxonomy>\r
4607                           <id provider="uniprot">88036</id>\r
4608                           <code>SELML</code>\r
4609                           <scientific_name>Selaginella moellendorffii</scientific_name>\r
4610                           <authority>Hieron</authority>\r
4611                           <common_name>Spikemoss</common_name>\r
4612                           <rank>species</rank>\r
4613                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>\r
4614                         </taxonomy>\r
4615                       </clade>\r
4616                     </clade>\r
4617                     <clade>\r
4618                       <taxonomy>\r
4619                         <id provider="uniprot">145481</id>\r
4620                         <code>PHYPA</code>\r
4621                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
4622                         <common_name>Moss</common_name>\r
4623                         <rank>subspecies</rank>\r
4624                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>\r
4625                       </taxonomy>\r
4626                     </clade>\r
4627                   </clade>\r
4628                   <clade>\r
4629                     <taxonomy>\r
4630                       <id provider="uniprot">3041</id>\r
4631                       <scientific_name>Chlorophyta</scientific_name>\r
4632                       <rank>phylum</rank>\r
4633                     </taxonomy>\r
4634                     <clade>\r
4635                       <taxonomy>\r
4636                         <id provider="uniprot">13792</id>\r
4637                         <scientific_name>Mamiellales</scientific_name>\r
4638                         <rank>order</rank>\r
4639                       </taxonomy>\r
4640                       <clade>\r
4641                         <taxonomy>\r
4642                           <id provider="uniprot">70447</id>\r
4643                           <scientific_name>Ostreococcus</scientific_name>\r
4644                           <rank>genus</rank>\r
4645                         </taxonomy>\r
4646                         <clade>\r
4647                           <taxonomy>\r
4648                             <id provider="uniprot">436017</id>\r
4649                             <code>OSTLU</code>\r
4650                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
4651                           </taxonomy>\r
4652                         </clade>\r
4653                         <clade>\r
4654                           <taxonomy>\r
4655                             <id provider="uniprot">385169</id>\r
4656                             <code>ORCXX</code>\r
4657                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>\r
4658                             <rank>species</rank>\r
4659                           </taxonomy>\r
4660                         </clade>\r
4661                         <clade>\r
4662                           <taxonomy>\r
4663                             <id provider="uniprot">70448</id>\r
4664                             <code>OSTTA</code>\r
4665                             <scientific_name>Ostreococcus tauri</scientific_name>\r
4666                             <rank>species</rank>\r
4667                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>\r
4668                           </taxonomy>\r
4669                         </clade>\r
4670                       </clade>\r
4671                       <clade>\r
4672                         <taxonomy>\r
4673                           <id provider="uniprot">38832</id>\r
4674                           <scientific_name>Micromonas</scientific_name>\r
4675                           <rank>genus</rank>\r
4676                         </taxonomy>\r
4677                         <clade>\r
4678                           <taxonomy>\r
4679                             <id provider="uniprot">564608</id>\r
4680                             <code>MICPC</code>\r
4681                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
4682                             <common_name>Picoplanktonic green alga</common_name>\r
4683                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>\r
4684                           </taxonomy>\r
4685                         </clade>\r
4686                         <clade>\r
4687                           <taxonomy>\r
4688                             <id provider="uniprot">296587</id>\r
4689                             <code>MICSR</code>\r
4690                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
4691                             <common_name>Picoplanktonic green alga</common_name>\r
4692                             <synonym>Micromonas sp. RCC299</synonym>\r
4693                             <rank>species</rank>\r
4694                           </taxonomy>\r
4695                         </clade>\r
4696                       </clade>\r
4697                     </clade>\r
4698                     <clade>\r
4699                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
4700                       <clade>\r
4701                         <taxonomy>\r
4702                           <id provider="uniprot">75966</id>\r
4703                           <scientific_name>Trebouxiophyceae</scientific_name>\r
4704                           <rank>class</rank>\r
4705                         </taxonomy>\r
4706                         <clade>\r
4707                           <taxonomy>\r
4708                             <id provider="uniprot">763042</id>\r
4709                             <code>ASCXX</code>\r
4710                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
4711                             <rank>species</rank>\r
4712                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
4713                           </taxonomy>\r
4714                         </clade>\r
4715                         <clade>\r
4716                           <taxonomy>\r
4717                             <id provider="uniprot">554065</id>\r
4718                             <code>CHLVA</code>\r
4719                             <scientific_name>Chlorella variabilis</scientific_name>\r
4720                             <authority>Shihira &amp; Krauss 1965</authority>\r
4721                             <common_name>Green alga</common_name>\r
4722                             <synonym>Chlorella sp. NC64A</synonym>\r
4723                             <synonym>Chlorella sp. Bnd1-ZK</synonym>\r
4724                             <rank>species</rank>\r
4725                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>\r
4726                           </taxonomy>\r
4727                         </clade>\r
4728                         <clade>\r
4729                           <taxonomy>\r
4730                             <id provider="uniprot">574566</id>\r
4731                             <code>CSUXX</code>\r
4732                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>\r
4733                             <synonym>Chlorella vulgaris C-169</synonym>\r
4734                             <synonym>Coccomyxa sp. C-169</synonym>\r
4735                             <rank>species</rank>\r
4736                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>\r
4737                           </taxonomy>\r
4738                         </clade>\r
4739                       </clade>\r
4740                       <clade>\r
4741                         <taxonomy>\r
4742                           <id provider="uniprot">3042</id>\r
4743                           <scientific_name>Chlamydomonadales</scientific_name>\r
4744                           <rank>order</rank>\r
4745                         </taxonomy>\r
4746                         <clade>\r
4747                           <taxonomy>\r
4748                             <id provider="uniprot">3055</id>\r
4749                             <code>CHLRE</code>\r
4750                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
4751                             <synonym>Chlamydomonas smithii</synonym>\r
4752                             <rank>species</rank>\r
4753                             <uri>http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif</uri>\r
4754                           </taxonomy>\r
4755                         </clade>\r
4756                         <clade>\r
4757                           <taxonomy>\r
4758                             <id provider="uniprot">3067</id>\r
4759                             <code>VOLCA</code>\r
4760                             <scientific_name>Volvox carteri</scientific_name>\r
4761                             <common_name>Green alga</common_name>\r
4762                             <rank>species</rank>\r
4763                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>\r
4764                           </taxonomy>\r
4765                         </clade>\r
4766                       </clade>\r
4767                     </clade>\r
4768                   </clade>\r
4769                 </clade>\r
4770                 <clade>\r
4771                   <taxonomy>\r
4772                     <id provider="uniprot">2763</id>\r
4773                     <scientific_name>Rhodophyta</scientific_name>\r
4774                     <common_name>red algae</common_name>\r
4775                   </taxonomy>\r
4776                   <clade>\r
4777                     <taxonomy>\r
4778                       <id provider="uniprot">265316</id>\r
4779                       <scientific_name>Cyanidiaceae</scientific_name>\r
4780                       <rank>family</rank>\r
4781                     </taxonomy>\r
4782                     <clade>\r
4783                       <taxonomy>\r
4784                         <id provider="uniprot">45157</id>\r
4785                         <code>CYAME</code>\r
4786                         <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
4787                         <common_name>Red alga</common_name>\r
4788                         <rank>species</rank>\r
4789                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>\r
4790                       </taxonomy>\r
4791                     </clade>\r
4792                     <clade>\r
4793                       <taxonomy>\r
4794                         <id provider="uniprot">130081</id>\r
4795                         <code>GALSU</code>\r
4796                         <scientific_name>Galdieria sulphuraria</scientific_name>\r
4797                         <common_name>Red alga</common_name>\r
4798                         <rank>species</rank>\r
4799                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>\r
4800                       </taxonomy>\r
4801                     </clade>\r
4802                   </clade>\r
4803                   <clade>\r
4804                     <taxonomy>\r
4805                       <id provider="uniprot">2769</id>\r
4806                       <code>CHOCR</code>\r
4807                       <scientific_name>Chondrus crispus</scientific_name>\r
4808                       <common_name>Carragheen moss</common_name>\r
4809                       <synonym>Irish moss</synonym>\r
4810                       <rank>species</rank>\r
4811                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>\r
4812                     </taxonomy>\r
4813                   </clade>\r
4814                 </clade>\r
4815                 <clade>\r
4816                   <taxonomy>\r
4817                     <id provider="uniprot">38254</id>\r
4818                     <scientific_name>Glaucocystophyceae</scientific_name>\r
4819                     <synonym>Glaucophyta</synonym>\r
4820                     <rank>class</rank>\r
4821                   </taxonomy>\r
4822                   <clade>\r
4823                     <taxonomy>\r
4824                       <id provider="uniprot">2762</id>\r
4825                       <code>CYAPA</code>\r
4826                       <scientific_name>Cyanophora paradoxa</scientific_name>\r
4827                       <rank>species</rank>\r
4828                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>\r
4829                     </taxonomy>\r
4830                   </clade>\r
4831                   <clade>\r
4832                     <taxonomy>\r
4833                       <id provider="uniprot">38271</id>\r
4834                       <scientific_name>Glaucocystis nostochinearum</scientific_name>\r
4835                       <rank>species</rank>\r
4836                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>\r
4837                     </taxonomy>\r
4838                   </clade>\r
4839                 </clade>\r
4840               </clade>\r
4841               <clade>\r
4842                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>\r
4843                 <clade>\r
4844                   <taxonomy>\r
4845                     <id provider="uniprot">2903</id>\r
4846                     <code>EMIHU</code>\r
4847                     <scientific_name>Emiliania huxleyi</scientific_name>\r
4848                     <synonym>Pontosphaera huxleyi</synonym>\r
4849                     <rank>species</rank>\r
4850                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>\r
4851                   </taxonomy>\r
4852                 </clade>\r
4853                 <clade>\r
4854                   <taxonomy>\r
4855                     <id provider="uniprot">55529</id>\r
4856                     <code>GUITH</code>\r
4857                     <scientific_name>Guillardia theta</scientific_name>\r
4858                     <synonym>Cryptomonas phi</synonym>\r
4859                     <rank>species</rank>\r
4860                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>\r
4861                   </taxonomy>\r
4862                   <reference doi="10.1016/j.cub.2007.03.069">\r
4863                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>\r
4864                   </reference>\r
4865                   <reference>\r
4866                   </reference>\r
4867                 </clade>\r
4868               </clade>\r
4869             </clade>\r
4870             <clade>\r
4871               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>\r
4872               <reference doi="10.1186/1471-2148-10-377">\r
4873                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>\r
4874               </reference>\r
4875               <reference>\r
4876               </reference>\r
4877               <clade>\r
4878                 <name>Stramenopiles &amp; Alveolata</name>\r
4879                 <clade>\r
4880                   <taxonomy>\r
4881                     <id provider="uniprot">33630</id>\r
4882                     <scientific_name>Alveolata</scientific_name>\r
4883                   </taxonomy>\r
4884                   <reference doi="10.1371/journal.pone.0019933">\r
4885                     <desc>Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates</desc>\r
4886                   </reference>\r
4887                   <clade>\r
4888                     <name>Myzozoa</name>\r
4889                     <clade>\r
4890                       <taxonomy>\r
4891                         <id provider="uniprot">5794</id>\r
4892                         <scientific_name>Apicomplexa</scientific_name>\r
4893                         <rank>phylum</rank>\r
4894                       </taxonomy>\r
4895                       <reference doi="10.1101/gr.083386.108">\r
4896                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>\r
4897                       </reference>\r
4898                       <reference>\r
4899                       </reference>\r
4900                       <clade>\r
4901                         <name>Aconoidasida &amp; Coccidia</name>\r
4902                         <clade>\r
4903                           <taxonomy>\r
4904                             <id provider="uniprot">422676</id>\r
4905                             <scientific_name>Aconoidasida</scientific_name>\r
4906                             <rank>class</rank>\r
4907                           </taxonomy>\r
4908                           <clade>\r
4909                             <taxonomy>\r
4910                               <id provider="uniprot">5820</id>\r
4911                               <scientific_name>Plasmodium</scientific_name>\r
4912                               <rank>genus</rank>\r
4913                             </taxonomy>\r
4914                             <clade>\r
4915                               <taxonomy>\r
4916                                 <id provider="uniprot">5825</id>\r
4917                                 <code>PLACH</code>\r
4918                                 <scientific_name>Plasmodium chabaudi</scientific_name>\r
4919                                 <rank>species</rank>\r
4920                               </taxonomy>\r
4921                             </clade>\r
4922                             <clade>\r
4923                               <taxonomy>\r
4924                                 <id provider="uniprot">36329</id>\r
4925                                 <code>PLAF7</code>\r
4926                                 <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>\r
4927                               </taxonomy>\r
4928                             </clade>\r
4929                             <clade>\r
4930                               <taxonomy>\r
4931                                 <id provider="uniprot">73239</id>\r
4932                                 <code>PLAYO</code>\r
4933                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
4934                                 <rank>subspecies</rank>\r
4935                               </taxonomy>\r
4936                             </clade>\r
4937                             <clade>\r
4938                               <taxonomy>\r
4939                                 <id provider="uniprot">126793</id>\r
4940                                 <code>PLAVS</code>\r
4941                                 <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>\r
4942                               </taxonomy>\r
4943                             </clade>\r
4944                           </clade>\r
4945                           <clade>\r
4946                             <taxonomy>\r
4947                               <id provider="uniprot">5863</id>\r
4948                               <scientific_name>Piroplasmida</scientific_name>\r
4949                               <common_name>Piroplasmids</common_name>\r
4950                             </taxonomy>\r
4951                             <clade>\r
4952                               <name>Theileria</name>\r
4953                               <taxonomy>\r
4954                                 <id provider="uniprot">5873</id>\r
4955                                 <scientific_name>Theileria</scientific_name>\r
4956                                 <rank>genus</rank>\r
4957                               </taxonomy>\r
4958                               <clade>\r
4959                                 <taxonomy>\r
4960                                   <id provider="uniprot">5874</id>\r
4961                                   <code>THEAN</code>\r
4962                                   <scientific_name>Theileria annulata</scientific_name>\r
4963                                   <rank>species</rank>\r
4964                                 </taxonomy>\r
4965                               </clade>\r
4966                               <clade>\r
4967                                 <taxonomy>\r
4968                                   <id provider="uniprot">5875</id>\r
4969                                   <code>THEPA</code>\r
4970                                   <scientific_name>Theileria parva</scientific_name>\r
4971                                   <common_name>East coast fever infection agent</common_name>\r
4972                                   <rank>species</rank>\r
4973                                 </taxonomy>\r
4974                               </clade>\r
4975                             </clade>\r
4976                             <clade>\r
4977                               <taxonomy>\r
4978                                 <id provider="uniprot">5865</id>\r
4979                                 <code>BABBO</code>\r
4980                                 <scientific_name>Babesia bovis</scientific_name>\r
4981                                 <rank>species</rank>\r
4982                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>\r
4983                               </taxonomy>\r
4984                             </clade>\r
4985                           </clade>\r
4986                         </clade>\r
4987                         <clade>\r
4988                           <taxonomy>\r
4989                             <id provider="uniprot">423054</id>\r
4990                             <scientific_name>Eimeriorina</scientific_name>\r
4991                             <rank>suborder</rank>\r
4992                           </taxonomy>\r
4993                           <reference doi="10.1093/molbev/msn213">\r
4994                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
4995                           </reference>\r
4996                           <reference>\r
4997                           </reference>\r
4998                           <clade>\r
4999                             <taxonomy>\r
5000                               <id provider="uniprot">5802</id>\r
5001                               <code>EIMTE</code>\r
5002                               <scientific_name>Eimeria tenella</scientific_name>\r
5003                               <common_name>Coccidian parasite</common_name>\r
5004                               <rank>species</rank>\r
5005                               <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
5006                             </taxonomy>\r
5007                           </clade>\r
5008                           <clade>\r
5009                             <taxonomy>\r
5010                               <id provider="uniprot">5811</id>\r
5011                               <code>TOXGO</code>\r
5012                               <scientific_name>Toxoplasma gondii</scientific_name>\r
5013                               <rank>species</rank>\r
5014                             </taxonomy>\r
5015                           </clade>\r
5016                         </clade>\r
5017                       </clade>\r
5018                       <clade>\r
5019                         <taxonomy>\r
5020                           <id provider="uniprot">5806</id>\r
5021                           <scientific_name>Cryptosporidium</scientific_name>\r
5022                           <rank>genus</rank>\r
5023                         </taxonomy>\r
5024                         <clade>\r
5025                           <taxonomy>\r
5026                             <id provider="uniprot">237895</id>\r
5027                             <code>CRYHO</code>\r
5028                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
5029                             <rank>species</rank>\r
5030                           </taxonomy>\r
5031                         </clade>\r
5032                         <clade>\r
5033                           <taxonomy>\r
5034                             <id provider="uniprot">5807</id>\r
5035                             <code>CRYPV</code>\r
5036                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
5037                             <rank>species</rank>\r
5038                           </taxonomy>\r
5039                         </clade>\r
5040                         <clade>\r
5041                           <taxonomy>\r
5042                             <id provider="uniprot">353152</id>\r
5043                             <code>CRYPI</code>\r
5044                             <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>\r
5045                           </taxonomy>\r
5046                         </clade>\r
5047                       </clade>\r
5048                     </clade>\r
5049                     <clade>\r
5050                       <name>Dinoflagellates &amp; Perkinsus</name>\r
5051                       <clade>\r
5052                         <taxonomy>\r
5053                           <id provider="uniprot">2864</id>\r
5054                           <scientific_name>Dinophyceae</scientific_name>\r
5055                           <rank>class</rank>\r
5056                         </taxonomy>\r
5057                         <clade>\r
5058                           <taxonomy>\r
5059                             <id provider="uniprot">2866</id>\r
5060                             <code>CRYCO</code>\r
5061                             <scientific_name>Crypthecodinium cohnii</scientific_name>\r
5062                             <common_name>Dinoflagellate</common_name>\r
5063                             <rank>species</rank>\r
5064                             <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>\r
5065                           </taxonomy>\r
5066                         </clade>\r
5067                         <clade>\r
5068                           <taxonomy>\r
5069                             <id provider="uniprot">2923</id>\r
5070                             <code>THOHE</code>\r
5071                             <scientific_name>Thoracosphaera heimii</scientific_name>\r
5072                             <common_name>Dinoflagellate</common_name>\r
5073                             <rank>species</rank>\r
5074                             <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>\r
5075                           </taxonomy>\r
5076                         </clade>\r
5077                       </clade>\r
5078                       <clade>\r
5079                         <taxonomy>\r
5080                           <id provider="uniprot">423536</id>\r
5081                           <code>PERM5</code>\r
5082                           <scientific_name>Perkinsus marinus (strain ATCC 50983 / TXsc)</scientific_name>\r
5083                           <uri>http://www.eurl-mollusc.eu/var/storage/images/medias-ifremer/medias-crlmollusc/images/perkinsus-zoosporangium/633746-1-eng-GB/Perkinsus-zoosporangium.jpg</uri>\r
5084                         </taxonomy>\r
5085                       </clade>\r
5086                     </clade>\r
5087                   </clade>\r
5088                   <clade>\r
5089                     <taxonomy>\r
5090                       <id provider="uniprot">5878</id>\r
5091                       <scientific_name>Ciliophora</scientific_name>\r
5092                     </taxonomy>\r
5093                     <clade>\r
5094                       <taxonomy>\r
5095                         <id provider="uniprot">431838</id>\r
5096                         <scientific_name>Intramacronucleata</scientific_name>\r
5097                         <rank>subphylum</rank>\r
5098                       </taxonomy>\r
5099                       <clade>\r
5100                         <taxonomy>\r
5101                           <id provider="uniprot">6020</id>\r
5102                           <scientific_name>Oligohymenophorea</scientific_name>\r
5103                           <rank>class</rank>\r
5104                         </taxonomy>\r
5105                         <clade>\r
5106                           <taxonomy>\r
5107                             <id provider="uniprot">31277</id>\r
5108                             <scientific_name>Hymenostomatida</scientific_name>\r
5109                             <rank>order</rank>\r
5110                           </taxonomy>\r
5111                           <clade>\r
5112                             <taxonomy>\r
5113                               <id provider="uniprot">857967</id>\r
5114                               <code>ICHMG</code>\r
5115                               <scientific_name>Ichthyophthirius multifiliis (strain G5)</scientific_name>\r
5116                               <common_name>White spot disease agent</common_name>\r
5117                               <synonym>Ich</synonym>\r
5118                               <uri>http://www.vet.cornell.edu/microbiology/FishDisease/aquaticprog/highlights/ich/ICH2.JPG</uri>\r
5119                             </taxonomy>\r
5120                           </clade>\r
5121                           <clade>\r
5122                             <taxonomy>\r
5123                               <id provider="uniprot">312017</id>\r
5124                               <code>TETTS</code>\r
5125                               <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>\r
5126                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>\r
5127                             </taxonomy>\r
5128                           </clade>\r
5129                         </clade>\r
5130                         <clade>\r
5131                           <taxonomy>\r
5132                             <id provider="uniprot">5888</id>\r
5133                             <code>PARTE</code>\r
5134                             <scientific_name>Paramecium tetraurelia</scientific_name>\r
5135                             <rank>species</rank>\r
5136                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>\r
5137                           </taxonomy>\r
5138                         </clade>\r
5139                       </clade>\r
5140                       <clade>\r
5141                         <taxonomy>\r
5142                           <id provider="uniprot">1172189</id>\r
5143                           <code>OTRXX</code>\r
5144                           <scientific_name>Oxytricha trifallax</scientific_name>\r
5145                           <authority>Stein, 1859</authority>\r
5146                           <rank>species</rank>\r
5147                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>\r
5148                         </taxonomy>\r
5149                       </clade>\r
5150                     </clade>\r
5151                     <clade>\r
5152                       <taxonomy>\r
5153                         <id provider="uniprot">5961</id>\r
5154                         <code>BLEJA</code>\r
5155                         <scientific_name>Blepharisma japonicum</scientific_name>\r
5156                         <rank>species</rank>\r
5157                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>\r
5158                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>\r
5159                       </taxonomy>\r
5160                     </clade>\r
5161                   </clade>\r
5162                 </clade>\r
5163                 <clade>\r
5164                   <taxonomy>\r
5165                     <id provider="uniprot">33634</id>\r
5166                     <scientific_name>Stramenopiles</scientific_name>\r
5167                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>\r
5168                     <synonym>Chromophyta</synonym>\r
5169                     <synonym>heterokonts</synonym>\r
5170                     <synonym>Heterokontophyta</synonym>\r
5171                   </taxonomy>\r
5172                   <clade>\r
5173                     <name>Labyrinthulomycetes &amp; Ochrophyta &amp; Oomycetes</name>\r
5174                     <clade>\r
5175                       <name>Ochrophyta &amp; Oomycetes</name>\r
5176                       <reference doi="10.1016/j.protis.2008.11.004">\r
5177                         <desc>Seven Gene Phylogeny of Heterokonts</desc>\r
5178                       </reference>\r
5179                       <reference>\r
5180                       </reference>\r
5181                       <clade>\r
5182                         <taxonomy>\r
5183                           <scientific_name>Ochrophyta</scientific_name>\r
5184                         </taxonomy>\r
5185                         <clade>\r
5186                           <taxonomy>\r
5187                             <id provider="uniprot">2836</id>\r
5188                             <scientific_name>Bacillariophyta</scientific_name>\r
5189                             <common_name>diatoms</common_name>\r
5190                             <rank>class</rank>\r
5191                           </taxonomy>\r
5192                           <clade>\r
5193                             <taxonomy>\r
5194                               <id provider="uniprot">33850</id>\r
5195                               <scientific_name>Bacillariophycidae</scientific_name>\r
5196                             </taxonomy>\r
5197                             <clade>\r
5198                               <taxonomy>\r
5199                                 <id provider="uniprot">186039</id>\r
5200                                 <code>FCYXX</code>\r
5201                                 <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
5202                                 <authority>Krieger</authority>\r
5203                                 <synonym>Nitzschia cylindrus</synonym>\r
5204                                 <rank>species</rank>\r
5205                                 <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>\r
5206                               </taxonomy>\r
5207                             </clade>\r
5208                             <clade>\r
5209                               <taxonomy>\r
5210                                 <id provider="uniprot">2850</id>\r
5211                                 <code>PHATR</code>\r
5212                                 <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
5213                                 <authority>Bohlin</authority>\r
5214                                 <rank>species</rank>\r
5215                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>\r
5216                               </taxonomy>\r
5217                             </clade>\r
5218                           </clade>\r
5219                           <clade>\r
5220                             <taxonomy>\r
5221                               <id provider="uniprot">35127</id>\r
5222                               <scientific_name>Thalassiosira</scientific_name>\r
5223                               <rank>genus</rank>\r
5224                             </taxonomy>\r
5225                             <clade>\r
5226                               <taxonomy>\r
5227                                 <id provider="uniprot">35128</id>\r
5228                                 <code>THAPS</code>\r
5229                                 <scientific_name>Thalassiosira pseudonana</scientific_name>\r
5230                                 <authority>Hasle &amp; Heimdal</authority>\r
5231                                 <common_name>Marine diatom</common_name>\r
5232                                 <synonym>Cyclotella nana</synonym>\r
5233                                 <rank>species</rank>\r
5234                                 <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>\r
5235                               </taxonomy>\r
5236                             </clade>\r
5237                             <clade>\r
5238                               <taxonomy>\r
5239                                 <id provider="uniprot">159749</id>\r
5240                                 <code>THAOC</code>\r
5241                                 <scientific_name>Thalassiosira oceanica</scientific_name>\r
5242                                 <common_name>Marine diatom</common_name>\r
5243                                 <rank>species</rank>\r
5244                               </taxonomy>\r
5245                             </clade>\r
5246                           </clade>\r
5247                         </clade>\r
5248                         <clade>\r
5249                           <name>Pelagophyceae &amp; Phaeophyceae</name>\r
5250                           <reference doi="10.1128/AEM.06952-11">\r
5251                             <desc>Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean</desc>\r
5252                           </reference>\r
5253                           <reference>\r
5254                           </reference>\r
5255                           <clade>\r
5256                             <taxonomy>\r
5257                               <id provider="uniprot">44056</id>\r
5258                               <code>AURAN</code>\r
5259                               <scientific_name>Aureococcus anophagefferens</scientific_name>\r
5260                               <authority>Hargraves &amp; Sieburth</authority>\r
5261                               <common_name>Harmful bloom alga</common_name>\r
5262                               <rank>species</rank>\r
5263                               <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>\r
5264                             </taxonomy>\r
5265                           </clade>\r
5266                           <clade>\r
5267                             <taxonomy>\r
5268                               <id provider="uniprot">2880</id>\r
5269                               <code>ECTSI</code>\r
5270                               <scientific_name>Ectocarpus siliculosus</scientific_name>\r
5271                               <common_name>Brown alga</common_name>\r
5272                               <rank>species</rank>\r
5273                               <uri>http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg</uri>\r
5274                             </taxonomy>\r
5275                           </clade>\r
5276                         </clade>\r
5277                       </clade>\r
5278                       <clade>\r
5279                         <taxonomy>\r
5280                           <id provider="uniprot">4762</id>\r
5281                           <scientific_name>Oomycetes</scientific_name>\r
5282                         </taxonomy>\r
5283                         <clade>\r
5284                           <taxonomy>\r
5285                             <id provider="uniprot">4776</id>\r
5286                             <scientific_name>Peronosporales</scientific_name>\r
5287                             <rank>order</rank>\r
5288                           </taxonomy>\r
5289                           <clade>\r
5290                             <taxonomy>\r
5291                               <id provider="uniprot">4783</id>\r
5292                               <scientific_name>Phytophthora</scientific_name>\r
5293                               <rank>genus</rank>\r
5294                             </taxonomy>\r
5295                             <clade>\r
5296                               <taxonomy>\r
5297                                 <id provider="uniprot">4787</id>\r
5298                                 <code>PHYIN</code>\r
5299                                 <scientific_name>Phytophthora infestans</scientific_name>\r
5300                                 <authority>(Mont.) de Bary 1876</authority>\r
5301                                 <common_name>Potato late blight fungus</common_name>\r
5302                                 <rank>species</rank>\r
5303                                 <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>\r
5304                               </taxonomy>\r
5305                             </clade>\r
5306                             <clade>\r
5307                               <taxonomy>\r
5308                                 <id provider="uniprot">164328</id>\r
5309                                 <code>PHYRM</code>\r
5310                                 <scientific_name>Phytophthora ramorum</scientific_name>\r
5311                                 <common_name>Sudden oak death agent</common_name>\r
5312                                 <rank>species</rank>\r
5313                                 <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>\r
5314                               </taxonomy>\r
5315                             </clade>\r
5316                             <clade>\r
5317                               <taxonomy>\r
5318                                 <id provider="uniprot">67593</id>\r
5319                                 <code>PHYSO</code>\r
5320                                 <scientific_name>Phytophthora sojae</scientific_name>\r
5321                                 <common_name>Soybean stem and root rot agent</common_name>\r
5322                                 <synonym>Phytophthora megasperma f. sp. glycines</synonym>\r
5323                                 <rank>species</rank>\r
5324                                 <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>\r
5325                               </taxonomy>\r
5326                             </clade>\r
5327                             <clade>\r
5328                               <taxonomy>\r
5329                                 <id provider="uniprot">4785</id>\r
5330                                 <code>PHYCI</code>\r
5331                                 <scientific_name>Phytophthora cinnamomi</scientific_name>\r
5332                                 <common_name>Cinnamon fungus</common_name>\r
5333                                 <rank>species</rank>\r
5334                                 <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>\r
5335                               </taxonomy>\r
5336                             </clade>\r
5337                             <clade>\r
5338                               <taxonomy>\r
5339                                 <id provider="uniprot">4784</id>\r
5340                                 <code>PHYCP</code>\r
5341                                 <scientific_name>Phytophthora capsici</scientific_name>\r
5342                                 <rank>species</rank>\r
5343                                 <uri>http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg</uri>\r
5344                               </taxonomy>\r
5345                             </clade>\r
5346                           </clade>\r
5347                           <clade>\r
5348                             <taxonomy>\r
5349                               <id provider="uniprot">559515</id>\r
5350                               <code>HYAAE</code>\r
5351                               <scientific_name>Hyaloperonospora arabidopsidis (strain Emoy2)</scientific_name>\r
5352                               <common_name>Downy mildew agent</common_name>\r
5353                               <synonym>Peronospora arabidopsidis</synonym>\r
5354                               <uri>http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg</uri>\r
5355                             </taxonomy>\r
5356                           </clade>\r
5357                         </clade>\r
5358                         <clade>\r
5359                           <taxonomy>\r
5360                             <id provider="uniprot">65071</id>\r
5361                             <code>PYTUL</code>\r
5362                             <scientific_name>Pythium ultimum</scientific_name>\r
5363                             <rank>species</rank>\r
5364                             <uri>http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg</uri>\r
5365                           </taxonomy>\r
5366                         </clade>\r
5367                       </clade>\r
5368                     </clade>\r
5369                     <clade>\r
5370                       <taxonomy>\r
5371                         <id provider="uniprot">33674</id>\r
5372                         <scientific_name>Thraustochytriaceae</scientific_name>\r
5373                         <synonym>Thraustochytriales</synonym>\r
5374                         <rank>family</rank>\r
5375                       </taxonomy>\r
5376                       <clade>\r
5377                         <taxonomy>\r
5378                           <id provider="uniprot">702273</id>\r
5379                           <code>AKEXX</code>\r
5380                           <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>\r
5381                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>\r
5382                         </taxonomy>\r
5383                       </clade>\r
5384                       <clade>\r
5385                         <taxonomy>\r
5386                           <id provider="uniprot">876976</id>\r
5387                           <code>SAGXX</code>\r
5388                           <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>\r
5389                           <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>\r
5390                         </taxonomy>\r
5391                       </clade>\r
5392                       <clade>\r
5393                         <taxonomy>\r
5394                           <id provider="uniprot">87102</id>\r
5395                           <code>ALIXX</code>\r
5396                           <scientific_name>Aurantiochytrium limacinum</scientific_name>\r
5397                           <synonym>Schizochytrium limacinum</synonym>\r
5398                           <rank>species</rank>\r
5399                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>\r
5400                         </taxonomy>\r
5401                       </clade>\r
5402                     </clade>\r
5403                   </clade>\r
5404                   <clade>\r
5405                     <taxonomy>\r
5406                       <id provider="uniprot">12968</id>\r
5407                       <code>BLAHO</code>\r
5408                       <scientific_name>Blastocystis hominis</scientific_name>\r
5409                       <rank>species</rank>\r
5410                     </taxonomy>\r
5411                   </clade>\r
5412                 </clade>\r
5413               </clade>\r
5414               <clade>\r
5415                 <taxonomy>\r
5416                   <id provider="uniprot">543769</id>\r
5417                   <scientific_name>Rhizaria</scientific_name>\r
5418                 </taxonomy>\r
5419                 <clade>\r
5420                   <taxonomy>\r
5421                     <id provider="uniprot">71427</id>\r
5422                     <scientific_name>Allogromia laticollaris</scientific_name>\r
5423                     <rank>species</rank>\r
5424                     <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
5425                   </taxonomy>\r
5426                 </clade>\r
5427                 <clade>\r
5428                   <taxonomy>\r
5429                     <id provider="uniprot">227086</id>\r
5430                     <code>BIGNA</code>\r
5431                     <scientific_name>Bigelowiella natans</scientific_name>\r
5432                     <common_name>Pedinomonas minutissima</common_name>\r
5433                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>\r
5434                     <synonym>Pedinomonas minutissima</synonym>\r
5435                     <rank>species</rank>\r
5436                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>\r
5437                   </taxonomy>\r
5438                 </clade>\r
5439               </clade>\r
5440             </clade>\r
5441           </clade>\r
5442           <clade>\r
5443             <name>Excavata</name>\r
5444             <reference doi="10.1038/nature04546">\r
5445             </reference>\r
5446             <clade>\r
5447               <name>Kinetoplastida &amp; Heterolobosea</name>\r
5448               <clade>\r
5449                 <taxonomy>\r
5450                   <id provider="uniprot">5653</id>\r
5451                   <scientific_name>Kinetoplastida</scientific_name>\r
5452                   <common_name>kinetoplasts</common_name>\r
5453                   <rank>order</rank>\r
5454                 </taxonomy>\r
5455                 <clade>\r
5456                   <taxonomy>\r
5457                     <id provider="uniprot">5654</id>\r
5458                     <scientific_name>Trypanosomatidae</scientific_name>\r
5459                     <rank>family</rank>\r
5460                   </taxonomy>\r
5461                   <clade>\r
5462                     <taxonomy>\r
5463                       <id provider="uniprot">5690</id>\r
5464                       <scientific_name>Trypanosoma</scientific_name>\r
5465                       <rank>genus</rank>\r
5466                     </taxonomy>\r
5467                     <clade>\r
5468                       <taxonomy>\r
5469                         <id provider="uniprot">999953</id>\r
5470                         <code>TRYB2</code>\r
5471                         <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>\r
5472                         <rank>strain</rank>\r
5473                       </taxonomy>\r
5474                     </clade>\r
5475                     <clade>\r
5476                       <taxonomy>\r
5477                         <id provider="uniprot">5693</id>\r
5478                         <code>TRYCR</code>\r
5479                         <scientific_name>Trypanosoma cruzi</scientific_name>\r
5480                         <rank>species</rank>\r
5481                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>\r
5482                       </taxonomy>\r
5483                     </clade>\r
5484                   </clade>\r
5485                   <clade>\r
5486                     <taxonomy>\r
5487                       <id provider="uniprot">5658</id>\r
5488                       <scientific_name>Leishmania</scientific_name>\r
5489                       <rank>genus</rank>\r
5490                     </taxonomy>\r
5491                     <clade>\r
5492                       <taxonomy>\r
5493                         <id provider="uniprot">5664</id>\r
5494                         <code>LEIMA</code>\r
5495                         <scientific_name>Leishmania major</scientific_name>\r
5496                         <rank>species</rank>\r
5497                       </taxonomy>\r
5498                     </clade>\r
5499                     <clade>\r
5500                       <taxonomy>\r
5501                         <id provider="uniprot">5671</id>\r
5502                         <code>LEIIN</code>\r
5503                         <scientific_name>Leishmania infantum</scientific_name>\r
5504                         <rank>species</rank>\r
5505                       </taxonomy>\r
5506                     </clade>\r
5507                     <clade>\r
5508                       <taxonomy>\r
5509                         <id provider="uniprot">5660</id>\r
5510                         <code>LEIBR</code>\r
5511                         <scientific_name>Leishmania braziliensis</scientific_name>\r
5512                         <rank>species</rank>\r
5513                       </taxonomy>\r
5514                     </clade>\r
5515                   </clade>\r
5516                 </clade>\r
5517                 <clade>\r
5518                   <taxonomy>\r
5519                     <id provider="uniprot">75058</id>\r
5520                     <code>BODSA</code>\r
5521                     <scientific_name>Bodo saltans</scientific_name>\r
5522                     <common_name>Flagellated protozoan</common_name>\r
5523                     <rank>species</rank>\r
5524                     <uri>http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg</uri>\r
5525                   </taxonomy>\r
5526                 </clade>\r
5527               </clade>\r
5528               <clade>\r
5529                 <taxonomy>\r
5530                   <id provider="uniprot">5762</id>\r
5531                   <code>NAEGR</code>\r
5532                   <scientific_name>Naegleria gruberi</scientific_name>\r
5533                   <common_name>Amoeba</common_name>\r
5534                   <rank>species</rank>\r
5535                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>\r
5536                 </taxonomy>\r
5537               </clade>\r
5538             </clade>\r
5539             <clade>\r
5540               <name>Metamonada</name>\r
5541               <clade>\r
5542                 <taxonomy>\r
5543                   <id provider="uniprot">184922</id>\r
5544                   <code>GIAIC</code>\r
5545                   <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>\r
5546                   <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>\r
5547                   <synonym>Giardia lamblia</synonym>\r
5548                   <rank>species</rank>\r
5549                 </taxonomy>\r
5550               </clade>\r
5551               <clade>\r
5552                 <taxonomy>\r
5553                   <id provider="uniprot">5722</id>\r
5554                   <code>TRIVA</code>\r
5555                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
5556                   <rank>species</rank>\r
5557                 </taxonomy>\r
5558               </clade>\r
5559             </clade>\r
5560           </clade>\r
5561           <clade>\r
5562             <taxonomy>\r
5563               <id provider="uniprot">554296</id>\r
5564               <scientific_name>Apusozoa</scientific_name>\r
5565             </taxonomy>\r
5566             <reference doi="10.1016/j.protis.2008.06.002">\r
5567               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>\r
5568             </reference>\r
5569             <clade>\r
5570               <taxonomy>\r
5571                 <id provider="uniprot">554453</id>\r
5572                 <scientific_name>Planomonas micra</scientific_name>\r
5573                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>\r
5574                 <synonym>Apusomonadidae sp. micra</synonym>\r
5575                 <rank>species</rank>\r
5576               </taxonomy>\r
5577             </clade>\r
5578             <clade>\r
5579               <taxonomy>\r
5580                 <id provider="uniprot">529818</id>\r
5581                 <code>TTRXX</code>\r
5582                 <scientific_name>Thecamonas trahens</scientific_name>\r
5583                 <authority>Larsen &amp; Patterson 1990</authority>\r
5584                 <synonym>Amastigomonas trahens</synonym>\r
5585                 <rank>species</rank>\r
5586                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>\r
5587               </taxonomy>\r
5588             </clade>\r
5589           </clade>\r
5590         </clade>\r
5591       </clade>\r
5592       <clade>\r
5593         <taxonomy>\r
5594           <id provider="uniprot">2157</id>\r
5595           <scientific_name>Archaea</scientific_name>\r
5596           <rank>superkingdom</rank>\r
5597         </taxonomy>\r
5598         <clade>\r
5599           <name>a_62</name>\r
5600           <clade>\r
5601             <name>a_56</name>\r
5602             <clade>\r
5603               <taxonomy>\r
5604                 <id provider="uniprot">28890</id>\r
5605                 <scientific_name>Euryarchaeota</scientific_name>\r
5606                 <rank>phylum</rank>\r
5607               </taxonomy>\r
5608               <clade>\r
5609                 <name>a_44</name>\r
5610                 <clade>\r
5611                   <name>a_28</name>\r
5612                   <clade>\r
5613                     <name>a_26</name>\r
5614                     <clade>\r
5615                       <taxonomy>\r
5616                         <id provider="uniprot">224756</id>\r
5617                         <scientific_name>Methanomicrobia</scientific_name>\r
5618                         <rank>class</rank>\r
5619                       </taxonomy>\r
5620                       <clade>\r
5621                         <name>a_14</name>\r
5622                         <clade>\r
5623                           <name>a_12</name>\r
5624                           <clade>\r
5625                             <taxonomy>\r
5626                               <id provider="uniprot">2206</id>\r
5627                               <scientific_name>Methanosarcinaceae</scientific_name>\r
5628                               <rank>family</rank>\r
5629                             </taxonomy>\r
5630                             <clade>\r
5631                               <taxonomy>\r
5632                                 <id provider="uniprot">2207</id>\r
5633                                 <scientific_name>Methanosarcina</scientific_name>\r
5634                                 <rank>genus</rank>\r
5635                               </taxonomy>\r
5636                               <clade>\r
5637                                 <name>a_2</name>\r
5638                                 <clade>\r
5639                                   <taxonomy>\r
5640                                     <id provider="uniprot">2214</id>\r
5641                                     <code>METAC</code>\r
5642                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
5643                                     <rank>species</rank>\r
5644                                   </taxonomy>\r
5645                                 </clade>\r
5646                                 <clade>\r
5647                                   <taxonomy>\r
5648                                     <id provider="uniprot">269797</id>\r
5649                                     <code>METBF</code>\r
5650                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
5651                                   </taxonomy>\r
5652                                 </clade>\r
5653                               </clade>\r
5654                               <clade>\r
5655                                 <taxonomy>\r
5656                                   <id provider="uniprot">2209</id>\r
5657                                   <code>METMA</code>\r
5658                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
5659                                   <synonym>Methanosarcina frisia</synonym>\r
5660                                   <rank>species</rank>\r
5661                                 </taxonomy>\r
5662                               </clade>\r
5663                             </clade>\r
5664                             <clade>\r
5665                               <taxonomy>\r
5666                                 <id provider="uniprot">259564</id>\r
5667                                 <code>METBU</code>\r
5668                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
5669                               </taxonomy>\r
5670                             </clade>\r
5671                           </clade>\r
5672                           <clade>\r
5673                             <name>a_11</name>\r
5674                             <taxonomy>\r
5675                               <id provider="uniprot">2191</id>\r
5676                               <scientific_name>Methanomicrobiales</scientific_name>\r
5677                               <rank>order</rank>\r
5678                             </taxonomy>\r
5679                             <clade>\r
5680                               <name>a_9</name>\r
5681                               <clade>\r
5682                                 <taxonomy>\r
5683                                   <id provider="uniprot">456442</id>\r
5684                                   <code>METB6</code>\r
5685                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
5686                                 </taxonomy>\r
5687                               </clade>\r
5688                               <clade>\r
5689                                 <taxonomy>\r
5690                                   <id provider="uniprot">2203</id>\r
5691                                   <code>METHU</code>\r
5692                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
5693                                   <rank>species</rank>\r
5694                                 </taxonomy>\r
5695                               </clade>\r
5696                             </clade>\r
5697                             <clade>\r
5698                               <taxonomy>\r
5699                                 <id provider="uniprot">368407</id>\r
5700                                 <code>METMJ</code>\r
5701                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
5702                               </taxonomy>\r
5703                             </clade>\r
5704                           </clade>\r
5705                         </clade>\r
5706                         <clade>\r
5707                           <taxonomy>\r
5708                             <id provider="uniprot">410358</id>\r
5709                             <code>METLZ</code>\r
5710                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
5711                           </taxonomy>\r
5712                         </clade>\r
5713                       </clade>\r
5714                       <clade>\r
5715                         <taxonomy>\r
5716                           <id provider="uniprot">349307</id>\r
5717                           <code>METTP</code>\r
5718                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
5719                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
5720                         </taxonomy>\r
5721                       </clade>\r
5722                     </clade>\r
5723                     <clade>\r
5724                       <taxonomy>\r
5725                         <id provider="uniprot">2236</id>\r
5726                         <scientific_name>Halobacteriaceae</scientific_name>\r
5727                         <rank>family</rank>\r
5728                       </taxonomy>\r
5729                       <clade>\r
5730                         <name>a_23</name>\r
5731                         <clade>\r
5732                           <name>a_19</name>\r
5733                           <clade>\r
5734                             <taxonomy>\r
5735                               <id provider="uniprot">2238</id>\r
5736                               <code>HALMA</code>\r
5737                               <scientific_name>Haloarcula marismortui</scientific_name>\r
5738                               <synonym>Halobacterium marismortui</synonym>\r
5739                               <rank>species</rank>\r
5740                             </taxonomy>\r
5741                           </clade>\r
5742                           <clade>\r
5743                             <taxonomy>\r
5744                               <id provider="uniprot">2257</id>\r
5745                               <code>NATPH</code>\r
5746                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
5747                               <common_name>Natronobacterium pharaonis</common_name>\r
5748                               <rank>species</rank>\r
5749                             </taxonomy>\r
5750                           </clade>\r
5751                         </clade>\r
5752                         <clade>\r
5753                           <name>a_22</name>\r
5754                           <taxonomy>\r
5755                             <id provider="uniprot">2239</id>\r
5756                             <scientific_name>Halobacterium</scientific_name>\r
5757                             <rank>genus</rank>\r
5758                           </taxonomy>\r
5759                           <clade>\r
5760                             <taxonomy>\r
5761                               <id provider="uniprot">478009</id>\r
5762                               <code>HALS3</code>\r
5763                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
5764                             </taxonomy>\r
5765                           </clade>\r
5766                           <clade>\r
5767                             <taxonomy>\r
5768                               <id provider="uniprot">2243</id>\r
5769                               <code>HALSP</code>\r
5770                               <scientific_name>Halobacterium sp.</scientific_name>\r
5771                               <rank>species</rank>\r
5772                             </taxonomy>\r
5773                           </clade>\r
5774                         </clade>\r
5775                       </clade>\r
5776                       <clade>\r
5777                         <taxonomy>\r
5778                           <id provider="uniprot">362976</id>\r
5779                           <code>HALWD</code>\r
5780                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
5781                         </taxonomy>\r
5782                       </clade>\r
5783                     </clade>\r
5784                   </clade>\r
5785                   <clade>\r
5786                     <taxonomy>\r
5787                       <id provider="uniprot">224325</id>\r
5788                       <code>ARCFU</code>\r
5789                       <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>\r
5790                       <rank>strain</rank>\r
5791                     </taxonomy>\r
5792                   </clade>\r
5793                 </clade>\r
5794                 <clade>\r
5795                   <name>a_43</name>\r
5796                   <clade>\r
5797                     <name>a_41</name>\r
5798                     <clade>\r
5799                       <taxonomy>\r
5800                         <id provider="uniprot">2182</id>\r
5801                         <scientific_name>Methanococcales</scientific_name>\r
5802                         <rank>order</rank>\r
5803                       </taxonomy>\r
5804                       <clade>\r
5805                         <name>a_31</name>\r
5806                         <clade>\r
5807                           <taxonomy>\r
5808                             <id provider="uniprot">2190</id>\r
5809                             <code>METJA</code>\r
5810                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
5811                             <synonym>Methanococcus jannaschii</synonym>\r
5812                             <rank>species</rank>\r
5813                           </taxonomy>\r
5814                         </clade>\r
5815                         <clade>\r
5816                           <taxonomy>\r
5817                             <id provider="uniprot">419665</id>\r
5818                             <code>META3</code>\r
5819                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
5820                           </taxonomy>\r
5821                         </clade>\r
5822                       </clade>\r
5823                       <clade>\r
5824                         <name>a_34</name>\r
5825                         <taxonomy>\r
5826                           <id provider="uniprot">2184</id>\r
5827                           <scientific_name>Methanococcus</scientific_name>\r
5828                           <rank>genus</rank>\r
5829                         </taxonomy>\r
5830                         <clade>\r
5831                           <taxonomy>\r
5832                             <id provider="uniprot">39152</id>\r
5833                             <code>METMP</code>\r
5834                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
5835                             <synonym>Methanococcus deltae</synonym>\r
5836                             <rank>species</rank>\r
5837                           </taxonomy>\r
5838                         </clade>\r
5839                         <clade>\r
5840                           <taxonomy>\r
5841                             <id provider="uniprot">406327</id>\r
5842                             <code>METVS</code>\r
5843                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
5844                           </taxonomy>\r
5845                         </clade>\r
5846                       </clade>\r
5847                     </clade>\r
5848                     <clade>\r
5849                       <name>a_40</name>\r
5850                       <taxonomy>\r
5851                         <id provider="uniprot">2159</id>\r
5852                         <scientific_name>Methanobacteriaceae</scientific_name>\r
5853                         <rank>family</rank>\r
5854                       </taxonomy>\r
5855                       <clade>\r
5856                         <name>a_38</name>\r
5857                         <clade>\r
5858                           <taxonomy>\r
5859                             <id provider="uniprot">420247</id>\r
5860                             <code>METS3</code>\r
5861                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
5862                           </taxonomy>\r
5863                         </clade>\r
5864                         <clade>\r
5865                           <taxonomy>\r
5866                             <id provider="uniprot">339860</id>\r
5867                             <code>METST</code>\r
5868                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
5869                           </taxonomy>\r
5870                         </clade>\r
5871                       </clade>\r
5872                       <clade>\r
5873                         <taxonomy>\r
5874                           <id provider="uniprot">187420</id>\r
5875                           <code>METTH</code>\r
5876                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
5877                           <synonym>Methanobacterium thermoautotrophicum</synonym>\r
5878                         </taxonomy>\r
5879                       </clade>\r
5880                     </clade>\r
5881                   </clade>\r
5882                   <clade>\r
5883                     <taxonomy>\r
5884                       <id provider="uniprot">2320</id>\r
5885                       <code>METKA</code>\r
5886                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
5887                       <rank>species</rank>\r
5888                     </taxonomy>\r
5889                   </clade>\r
5890                 </clade>\r
5891               </clade>\r
5892               <clade>\r
5893                 <taxonomy>\r
5894                   <id provider="uniprot">2259</id>\r
5895                   <scientific_name>Thermococcaceae</scientific_name>\r
5896                   <rank>family</rank>\r
5897                 </taxonomy>\r
5898                 <clade>\r
5899                   <name>PYRFU &amp; THEKO &amp; PYRAB &amp; PYRHO</name>\r
5900                   <clade>\r
5901                     <name>PYRFU &amp; THEKO</name>\r
5902                     <clade>\r
5903                       <taxonomy>\r
5904                         <id provider="uniprot">2261</id>\r
5905                         <code>PYRFU</code>\r
5906                         <scientific_name>Pyrococcus furiosus</scientific_name>\r
5907                         <rank>species</rank>\r
5908                       </taxonomy>\r
5909                     </clade>\r
5910                     <clade>\r
5911                       <taxonomy>\r
5912                         <id provider="uniprot">69014</id>\r
5913                         <code>THEKO</code>\r
5914                         <scientific_name>Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
5915                         <synonym>Pyrococcus kodakaraensis (strain KOD1)</synonym>\r
5916                       </taxonomy>\r
5917                     </clade>\r
5918                   </clade>\r
5919                   <clade>\r
5920                     <taxonomy>\r
5921                       <id provider="uniprot">2260</id>\r
5922                       <scientific_name>Pyrococcus</scientific_name>\r
5923                       <rank>genus</rank>\r
5924                     </taxonomy>\r
5925                     <clade>\r
5926                       <taxonomy>\r
5927                         <id provider="uniprot">29292</id>\r
5928                         <code>PYRAB</code>\r
5929                         <scientific_name>Pyrococcus abyssi</scientific_name>\r
5930                         <rank>species</rank>\r
5931                       </taxonomy>\r
5932                     </clade>\r
5933                     <clade>\r
5934                       <taxonomy>\r
5935                         <id provider="uniprot">53953</id>\r
5936                         <code>PYRHO</code>\r
5937                         <scientific_name>Pyrococcus horikoshii</scientific_name>\r
5938                         <rank>species</rank>\r
5939                       </taxonomy>\r
5940                     </clade>\r
5941                   </clade>\r
5942                 </clade>\r
5943                 <clade>\r
5944                   <taxonomy>\r
5945                     <id provider="uniprot">523850</id>\r
5946                     <code>THEON</code>\r
5947                     <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>\r
5948                   </taxonomy>\r
5949                 </clade>\r
5950               </clade>\r
5951             </clade>\r
5952             <clade>\r
5953               <name>a_55</name>\r
5954               <clade>\r
5955                 <taxonomy>\r
5956                   <id provider="uniprot">228908</id>\r
5957                   <code>NANEQ</code>\r
5958                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
5959                 </taxonomy>\r
5960               </clade>\r
5961               <clade>\r
5962                 <taxonomy>\r
5963                   <id provider="uniprot">436308</id>\r
5964                   <code>NITMS</code>\r
5965                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
5966                 </taxonomy>\r
5967               </clade>\r
5968             </clade>\r
5969           </clade>\r
5970           <clade>\r
5971             <taxonomy>\r
5972               <id provider="uniprot">2301</id>\r
5973               <scientific_name>Thermoplasmatales</scientific_name>\r
5974               <rank>order</rank>\r
5975             </taxonomy>\r
5976             <clade>\r
5977               <name>a_59</name>\r
5978               <taxonomy>\r
5979                 <id provider="uniprot">2302</id>\r
5980                 <scientific_name>Thermoplasma</scientific_name>\r
5981                 <rank>genus</rank>\r
5982               </taxonomy>\r
5983               <clade>\r
5984                 <taxonomy>\r
5985                   <id provider="uniprot">273075</id>\r
5986                   <code>THEAC</code>\r
5987                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
5988                 </taxonomy>\r
5989               </clade>\r
5990               <clade>\r
5991                 <taxonomy>\r
5992                   <id provider="uniprot">273116</id>\r
5993                   <code>THEVO</code>\r
5994                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
5995                 </taxonomy>\r
5996               </clade>\r
5997             </clade>\r
5998             <clade>\r
5999               <taxonomy>\r
6000                 <id provider="uniprot">263820</id>\r
6001                 <code>PICTO</code>\r
6002                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
6003               </taxonomy>\r
6004             </clade>\r
6005           </clade>\r
6006         </clade>\r
6007         <clade>\r
6008           <name>a_93</name>\r
6009           <clade>\r
6010             <taxonomy>\r
6011               <id provider="uniprot">183924</id>\r
6012               <scientific_name>Thermoprotei</scientific_name>\r
6013               <rank>class</rank>\r
6014             </taxonomy>\r
6015             <clade>\r
6016               <name>a_83</name>\r
6017               <clade>\r
6018                 <name>a_81</name>\r
6019                 <clade>\r
6020                   <taxonomy>\r
6021                     <id provider="uniprot">2267</id>\r
6022                     <scientific_name>Thermoproteaceae</scientific_name>\r
6023                     <rank>family</rank>\r
6024                   </taxonomy>\r
6025                   <clade>\r
6026                     <name>a_71</name>\r
6027                     <clade>\r
6028                       <name>a_67</name>\r
6029                       <taxonomy>\r
6030                         <id provider="uniprot">2276</id>\r
6031                         <scientific_name>Pyrobaculum</scientific_name>\r
6032                         <rank>genus</rank>\r
6033                       </taxonomy>\r
6034                       <clade>\r
6035                         <name>a_65</name>\r
6036                         <clade>\r
6037                           <taxonomy>\r
6038                             <id provider="uniprot">340102</id>\r
6039                             <code>PYRAR</code>\r
6040                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
6041                           </taxonomy>\r
6042                         </clade>\r
6043                         <clade>\r
6044                           <taxonomy>\r
6045                             <id provider="uniprot">410359</id>\r
6046                             <code>PYRCJ</code>\r
6047                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
6048                           </taxonomy>\r
6049                         </clade>\r
6050                       </clade>\r
6051                       <clade>\r
6052                         <taxonomy>\r
6053                           <id provider="uniprot">13773</id>\r
6054                           <code>PYRAE</code>\r
6055                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
6056                           <rank>species</rank>\r
6057                         </taxonomy>\r
6058                       </clade>\r
6059                     </clade>\r
6060                     <clade>\r
6061                       <name>a_70</name>\r
6062                       <clade>\r
6063                         <taxonomy>\r
6064                           <id provider="uniprot">384616</id>\r
6065                           <code>PYRIL</code>\r
6066                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
6067                         </taxonomy>\r
6068                       </clade>\r
6069                       <clade>\r
6070                         <taxonomy>\r
6071                           <id provider="uniprot">444157</id>\r
6072                           <code>THENV</code>\r
6073                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
6074                           <synonym>Thermoproteus neutrophilus</synonym>\r
6075                         </taxonomy>\r
6076                       </clade>\r
6077                     </clade>\r
6078                   </clade>\r
6079                   <clade>\r
6080                     <taxonomy>\r
6081                       <id provider="uniprot">397948</id>\r
6082                       <code>CALMQ</code>\r
6083                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
6084                     </taxonomy>\r
6085                   </clade>\r
6086                 </clade>\r
6087                 <clade>\r
6088                   <name>a_80</name>\r
6089                   <taxonomy>\r
6090                     <id provider="uniprot">118883</id>\r
6091                     <scientific_name>Sulfolobaceae</scientific_name>\r
6092                     <rank>family</rank>\r
6093                   </taxonomy>\r
6094                   <clade>\r
6095                     <name>a_78</name>\r
6096                     <taxonomy>\r
6097                       <id provider="uniprot">2284</id>\r
6098                       <scientific_name>Sulfolobus</scientific_name>\r
6099                       <rank>genus</rank>\r
6100                     </taxonomy>\r
6101                     <clade>\r
6102                       <name>a_76</name>\r
6103                       <clade>\r
6104                         <taxonomy>\r
6105                           <id provider="uniprot">2285</id>\r
6106                           <code>SULAC</code>\r
6107                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
6108                           <rank>species</rank>\r
6109                         </taxonomy>\r
6110                       </clade>\r
6111                       <clade>\r
6112                         <taxonomy>\r
6113                           <id provider="uniprot">273063</id>\r
6114                           <code>SULTO</code>\r
6115                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
6116                         </taxonomy>\r
6117                       </clade>\r
6118                     </clade>\r
6119                     <clade>\r
6120                       <taxonomy>\r
6121                         <id provider="uniprot">2287</id>\r
6122                         <code>SULSO</code>\r
6123                         <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>\r
6124                         <synonym>Sulfolobus solfataricus P2</synonym>\r
6125                         <rank>strain</rank>\r
6126                       </taxonomy>\r
6127                     </clade>\r
6128                   </clade>\r
6129                   <clade>\r
6130                     <taxonomy>\r
6131                       <id provider="uniprot">399549</id>\r
6132                       <code>METS5</code>\r
6133                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
6134                     </taxonomy>\r
6135                   </clade>\r
6136                 </clade>\r
6137               </clade>\r
6138               <clade>\r
6139                 <taxonomy>\r
6140                   <id provider="uniprot">56636</id>\r
6141                   <code>AERPE</code>\r
6142                   <scientific_name>Aeropyrum pernix</scientific_name>\r
6143                   <rank>species</rank>\r
6144                 </taxonomy>\r
6145               </clade>\r
6146             </clade>\r
6147             <clade>\r
6148               <name>a_90</name>\r
6149               <clade>\r
6150                 <name>a_88</name>\r
6151                 <clade>\r
6152                   <name>a_86</name>\r
6153                   <clade>\r
6154                     <taxonomy>\r
6155                       <id provider="uniprot">399550</id>\r
6156                       <code>STAMF</code>\r
6157                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
6158                     </taxonomy>\r
6159                   </clade>\r
6160                   <clade>\r
6161                     <taxonomy>\r
6162                       <id provider="uniprot">368408</id>\r
6163                       <code>THEPD</code>\r
6164                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
6165                     </taxonomy>\r
6166                   </clade>\r
6167                 </clade>\r
6168                 <clade>\r
6169                   <taxonomy>\r
6170                     <id provider="uniprot">415426</id>\r
6171                     <code>HYPBU</code>\r
6172                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
6173                   </taxonomy>\r
6174                 </clade>\r
6175               </clade>\r
6176               <clade>\r
6177                 <taxonomy>\r
6178                   <id provider="uniprot">453591</id>\r
6179                   <code>IGNH4</code>\r
6180                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
6181                 </taxonomy>\r
6182               </clade>\r
6183             </clade>\r
6184           </clade>\r
6185           <clade>\r
6186             <taxonomy>\r
6187               <id provider="uniprot">374847</id>\r
6188               <code>KORCO</code>\r
6189               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
6190             </taxonomy>\r
6191           </clade>\r
6192         </clade>\r
6193       </clade>\r
6194     </clade>\r
6195     <clade>\r
6196       <taxonomy>\r
6197         <id provider="uniprot">2</id>\r
6198         <scientific_name>Bacteria</scientific_name>\r
6199         <rank>superkingdom</rank>\r
6200       </taxonomy>\r
6201       <clade>\r
6202         <name>b_278</name>\r
6203         <clade>\r
6204           <name>b_268</name>\r
6205           <clade>\r
6206             <name>b_226</name>\r
6207             <clade>\r
6208               <name>b_200</name>\r
6209               <clade>\r
6210                 <name>b_194</name>\r
6211                 <clade>\r
6212                   <name>b_104</name>\r
6213                   <clade>\r
6214                     <name>b_80</name>\r
6215                     <clade>\r
6216                       <taxonomy>\r
6217                         <id provider="uniprot">1224</id>\r
6218                         <scientific_name>Proteobacteria</scientific_name>\r
6219                         <rank>phylum</rank>\r
6220                       </taxonomy>\r
6221                       <clade>\r
6222                         <name>b_52</name>\r
6223                         <clade>\r
6224                           <name>b_44</name>\r
6225                           <clade>\r
6226                             <name>b_30</name>\r
6227                             <clade>\r
6228                               <name>b_24</name>\r
6229                               <taxonomy>\r
6230                                 <id provider="uniprot">1236</id>\r
6231                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
6232                                 <rank>class</rank>\r
6233                               </taxonomy>\r
6234                               <clade>\r
6235                                 <name>b_16</name>\r
6236                                 <clade>\r
6237                                   <taxonomy>\r
6238                                     <id provider="uniprot">543</id>\r
6239                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
6240                                     <rank>family</rank>\r
6241                                   </taxonomy>\r
6242                                   <clade>\r
6243                                     <name>b_8</name>\r
6244                                     <clade>\r
6245                                       <name>b_6</name>\r
6246                                       <clade>\r
6247                                         <name>b_4</name>\r
6248                                         <clade>\r
6249                                           <taxonomy>\r
6250                                             <id provider="uniprot">561</id>\r
6251                                             <scientific_name>Escherichia</scientific_name>\r
6252                                             <rank>genus</rank>\r
6253                                           </taxonomy>\r
6254                                           <clade>\r
6255                                             <taxonomy>\r
6256                                               <id provider="uniprot">83333</id>\r
6257                                               <code>ECOLI</code>\r
6258                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
6259                                             </taxonomy>\r
6260                                           </clade>\r
6261                                           <clade>\r
6262                                             <taxonomy>\r
6263                                               <id provider="uniprot">83334</id>\r
6264                                               <code>ECO57</code>\r
6265                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
6266                                             </taxonomy>\r
6267                                           </clade>\r
6268                                         </clade>\r
6269                                         <clade>\r
6270                                           <taxonomy>\r
6271                                             <id provider="uniprot">623</id>\r
6272                                             <code>SHIFL</code>\r
6273                                             <scientific_name>Shigella flexneri</scientific_name>\r
6274                                             <rank>species</rank>\r
6275                                           </taxonomy>\r
6276                                         </clade>\r
6277                                       </clade>\r
6278                                       <clade>\r
6279                                         <taxonomy>\r
6280                                           <id provider="uniprot">90371</id>\r
6281                                           <code>SALTY</code>\r
6282                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
6283                                         </taxonomy>\r
6284                                       </clade>\r
6285                                     </clade>\r
6286                                     <clade>\r
6287                                       <taxonomy>\r
6288                                         <id provider="uniprot">632</id>\r
6289                                         <code>YERPE</code>\r
6290                                         <scientific_name>Yersinia pestis</scientific_name>\r
6291                                         <rank>species</rank>\r
6292                                       </taxonomy>\r
6293                                     </clade>\r
6294                                   </clade>\r
6295                                   <clade>\r
6296                                     <taxonomy>\r
6297                                       <id provider="uniprot">29488</id>\r
6298                                       <code>PHOLU</code>\r
6299                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
6300                                       <synonym>Xenorhabdus luminescens</synonym>\r
6301                                       <rank>species</rank>\r
6302                                     </taxonomy>\r
6303                                   </clade>\r
6304                                 </clade>\r
6305                                 <clade>\r
6306                                   <name>b_15</name>\r
6307                                   <clade>\r
6308                                     <name>b_13</name>\r
6309                                     <taxonomy>\r
6310                                       <id provider="uniprot">641</id>\r
6311                                       <scientific_name>Vibrionaceae</scientific_name>\r
6312                                       <rank>family</rank>\r
6313                                     </taxonomy>\r
6314                                     <clade>\r
6315                                       <taxonomy>\r
6316                                         <id provider="uniprot">74109</id>\r
6317                                         <code>PHOPR</code>\r
6318                                         <scientific_name>Photobacterium profundum</scientific_name>\r
6319                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
6320                                         <rank>species</rank>\r
6321                                       </taxonomy>\r
6322                                     </clade>\r
6323                                     <clade>\r
6324                                       <taxonomy>\r
6325                                         <id provider="uniprot">666</id>\r
6326                                         <code>VIBCH</code>\r
6327                                         <scientific_name>Vibrio cholerae</scientific_name>\r
6328                                         <rank>species</rank>\r
6329                                       </taxonomy>\r
6330                                     </clade>\r
6331                                   </clade>\r
6332                                   <clade>\r
6333                                     <taxonomy>\r
6334                                       <id provider="uniprot">318161</id>\r
6335                                       <code>SHEDO</code>\r
6336                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
6337                                     </taxonomy>\r
6338                                   </clade>\r
6339                                 </clade>\r
6340                               </clade>\r
6341                               <clade>\r
6342                                 <name>b_23</name>\r
6343                                 <clade>\r
6344                                   <name>b_21</name>\r
6345                                   <taxonomy>\r
6346                                     <id provider="uniprot">286</id>\r
6347                                     <scientific_name>Pseudomonas</scientific_name>\r
6348                                     <rank>genus</rank>\r
6349                                   </taxonomy>\r
6350                                   <clade>\r
6351                                     <name>b_19</name>\r
6352                                     <clade>\r
6353                                       <taxonomy>\r
6354                                         <id provider="uniprot">220664</id>\r
6355                                         <code>PSEF5</code>\r
6356                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
6357                                       </taxonomy>\r
6358                                     </clade>\r
6359                                     <clade>\r
6360                                       <taxonomy>\r
6361                                         <id provider="uniprot">205922</id>\r
6362                                         <code>PSEPF</code>\r
6363                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
6364                                       </taxonomy>\r
6365                                     </clade>\r
6366                                   </clade>\r
6367                                   <clade>\r
6368                                     <taxonomy>\r
6369                                       <id provider="uniprot">287</id>\r
6370                                       <code>PSEAE</code>\r
6371                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
6372                                       <rank>species</rank>\r
6373                                     </taxonomy>\r
6374                                   </clade>\r
6375                                 </clade>\r
6376                                 <clade>\r
6377                                   <taxonomy>\r
6378                                     <id provider="uniprot">290398</id>\r
6379                                     <code>CHRSD</code>\r
6380                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
6381                                   </taxonomy>\r
6382                                 </clade>\r
6383                               </clade>\r
6384                             </clade>\r
6385                             <clade>\r
6386                               <name>b_29</name>\r
6387                               <taxonomy>\r
6388                                 <id provider="uniprot">28216</id>\r
6389                                 <scientific_name>Betaproteobacteria</scientific_name>\r
6390                                 <rank>class</rank>\r
6391                               </taxonomy>\r
6392                               <clade>\r
6393                                 <taxonomy>\r
6394                                   <id provider="uniprot">159087</id>\r
6395                                   <code>DECAR</code>\r
6396                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
6397                                 </taxonomy>\r
6398                               </clade>\r
6399                               <clade>\r
6400                                 <taxonomy>\r
6401                                   <id provider="uniprot">266264</id>\r
6402                                   <code>RALME</code>\r
6403                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
6404                                 </taxonomy>\r
6405                               </clade>\r
6406                             </clade>\r
6407                           </clade>\r
6408                           <clade>\r
6409                             <name>b_43</name>\r
6410                             <clade>\r
6411                               <name>b_41</name>\r
6412                               <clade>\r
6413                                 <name>b_35</name>\r
6414                                 <taxonomy>\r
6415                                   <id provider="uniprot">28216</id>\r
6416                                   <scientific_name>Betaproteobacteria</scientific_name>\r
6417                                   <rank>class</rank>\r
6418                                 </taxonomy>\r
6419                                 <clade>\r
6420                                   <name>b_33</name>\r
6421                                   <taxonomy>\r
6422                                     <id provider="uniprot">206379</id>\r
6423                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
6424                                     <rank>family</rank>\r
6425                                   </taxonomy>\r
6426                                   <clade>\r
6427                                     <taxonomy>\r
6428                                       <id provider="uniprot">915</id>\r
6429                                       <code>NITEU</code>\r
6430                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
6431                                       <rank>species</rank>\r
6432                                     </taxonomy>\r
6433                                   </clade>\r
6434                                   <clade>\r
6435                                     <taxonomy>\r
6436                                       <id provider="uniprot">323848</id>\r
6437                                       <code>NITMU</code>\r
6438                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
6439                                     </taxonomy>\r
6440                                   </clade>\r
6441                                 </clade>\r
6442                                 <clade>\r
6443                                   <taxonomy>\r
6444                                     <id provider="uniprot">36861</id>\r
6445                                     <code>THIDE</code>\r
6446                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
6447                                     <rank>species</rank>\r
6448                                   </taxonomy>\r
6449                                 </clade>\r
6450                               </clade>\r
6451                               <clade>\r
6452                                 <name>b_40</name>\r
6453                                 <taxonomy>\r
6454                                   <id provider="uniprot">135613</id>\r
6455                                   <scientific_name>Chromatiales</scientific_name>\r
6456                                   <rank>order</rank>\r
6457                                 </taxonomy>\r
6458                                 <clade>\r
6459                                   <name>b_38</name>\r
6460                                   <taxonomy>\r
6461                                     <id provider="uniprot">72276</id>\r
6462                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
6463                                     <common_name>purple sulfur bacteria</common_name>\r
6464                                     <rank>family</rank>\r
6465                                   </taxonomy>\r
6466                                   <clade>\r
6467                                     <taxonomy>\r
6468                                       <id provider="uniprot">187272</id>\r
6469                                       <code>ALHEH</code>\r
6470                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
6471                                     </taxonomy>\r
6472                                   </clade>\r
6473                                   <clade>\r
6474                                     <taxonomy>\r
6475                                       <id provider="uniprot">349124</id>\r
6476                                       <code>HALHL</code>\r
6477                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
6478                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
6479                                     </taxonomy>\r
6480                                   </clade>\r
6481                                 </clade>\r
6482                                 <clade>\r
6483                                   <taxonomy>\r
6484                                     <id provider="uniprot">323261</id>\r
6485                                     <code>NITOC</code>\r
6486                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
6487                                   </taxonomy>\r
6488                                 </clade>\r
6489                               </clade>\r
6490                             </clade>\r
6491                             <clade>\r
6492                               <taxonomy>\r
6493                                 <id provider="uniprot">317025</id>\r
6494                                 <code>THICR</code>\r
6495                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
6496                               </taxonomy>\r
6497                             </clade>\r
6498                           </clade>\r
6499                         </clade>\r
6500                         <clade>\r
6501                           <name>b_51</name>\r
6502                           <taxonomy>\r
6503                             <id provider="uniprot">1236</id>\r
6504                             <scientific_name>Gammaproteobacteria</scientific_name>\r
6505                             <rank>class</rank>\r
6506                           </taxonomy>\r
6507                           <clade>\r
6508                             <name>b_47</name>\r
6509                             <clade>\r
6510                               <taxonomy>\r
6511                                 <id provider="uniprot">135577</id>\r
6512                                 <code>IDILO</code>\r
6513                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
6514                                 <rank>species</rank>\r
6515                               </taxonomy>\r
6516                             </clade>\r
6517                             <clade>\r
6518                               <taxonomy>\r
6519                                 <id provider="uniprot">446</id>\r
6520                                 <code>LEGPN</code>\r
6521                                 <scientific_name>Legionella pneumophila</scientific_name>\r
6522                                 <rank>species</rank>\r
6523                               </taxonomy>\r
6524                             </clade>\r
6525                           </clade>\r
6526                           <clade>\r
6527                             <name>b_50</name>\r
6528                             <taxonomy>\r
6529                               <id provider="uniprot">32033</id>\r
6530                               <scientific_name>Xanthomonadaceae</scientific_name>\r
6531                               <rank>family</rank>\r
6532                             </taxonomy>\r
6533                             <clade>\r
6534                               <taxonomy>\r
6535                                 <id provider="uniprot">190486</id>\r
6536                                 <code>XANAC</code>\r
6537                                 <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>\r
6538                                 <synonym>Xanthomonas citri pv. citri str. 306</synonym>\r
6539                               </taxonomy>\r
6540                             </clade>\r
6541                             <clade>\r
6542                               <taxonomy>\r
6543                                 <id provider="uniprot">183190</id>\r
6544                                 <code>XYLFT</code>\r
6545                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
6546                               </taxonomy>\r
6547                             </clade>\r
6548                           </clade>\r
6549                         </clade>\r
6550                       </clade>\r
6551                       <clade>\r
6552                         <name>b_71</name>\r
6553                         <taxonomy>\r
6554                           <id provider="uniprot">28211</id>\r
6555                           <scientific_name>Alphaproteobacteria</scientific_name>\r
6556                           <rank>class</rank>\r
6557                         </taxonomy>\r
6558                         <clade>\r
6559                           <name>b_67</name>\r
6560                           <clade>\r
6561                             <name>b_65</name>\r
6562                             <clade>\r
6563                               <name>b_61</name>\r
6564                               <taxonomy>\r
6565                                 <id provider="uniprot">356</id>\r
6566                                 <scientific_name>Rhizobiales</scientific_name>\r
6567                                 <rank>order</rank>\r
6568                               </taxonomy>\r
6569                               <clade>\r
6570                                 <name>b_57</name>\r
6571                                 <taxonomy>\r
6572                                   <id provider="uniprot">227290</id>\r
6573                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
6574                                 </taxonomy>\r
6575                                 <clade>\r
6576                                   <taxonomy>\r
6577                                     <id provider="uniprot">176299</id>\r
6578                                     <code>AGRT5</code>\r
6579                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
6580                                   </taxonomy>\r
6581                                 </clade>\r
6582                                 <clade>\r
6583                                   <taxonomy>\r
6584                                     <id provider="uniprot">347834</id>\r
6585                                     <code>RHIEC</code>\r
6586                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
6587                                   </taxonomy>\r
6588                                 </clade>\r
6589                               </clade>\r
6590                               <clade>\r
6591                                 <name>b_60</name>\r
6592                                 <taxonomy>\r
6593                                   <id provider="uniprot">41294</id>\r
6594                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
6595                                   <rank>family</rank>\r
6596                                 </taxonomy>\r
6597                                 <clade>\r
6598                                   <taxonomy>\r
6599                                     <id provider="uniprot">375</id>\r
6600                                     <code>BRAJA</code>\r
6601                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
6602                                     <rank>species</rank>\r
6603                                   </taxonomy>\r
6604                                 </clade>\r
6605                                 <clade>\r
6606                                   <taxonomy>\r
6607                                     <id provider="uniprot">395960</id>\r
6608                                     <code>RHOPT</code>\r
6609                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
6610                                   </taxonomy>\r
6611                                 </clade>\r
6612                               </clade>\r
6613                             </clade>\r
6614                             <clade>\r
6615                               <name>b_64</name>\r
6616                               <taxonomy>\r
6617                                 <id provider="uniprot">31989</id>\r
6618                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
6619                                 <rank>family</rank>\r
6620                               </taxonomy>\r
6621                               <clade>\r
6622                                 <taxonomy>\r
6623                                   <id provider="uniprot">349101</id>\r
6624                                   <code>RHOS1</code>\r
6625                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
6626                                 </taxonomy>\r
6627                               </clade>\r
6628                               <clade>\r
6629                                 <taxonomy>\r
6630                                   <id provider="uniprot">375451</id>\r
6631                                   <code>ROSDO</code>\r
6632                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
6633                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
6634                                   <synonym>Roseobacter denitrificans</synonym>\r
6635                                 </taxonomy>\r
6636                               </clade>\r
6637                             </clade>\r
6638                           </clade>\r
6639                           <clade>\r
6640                             <taxonomy>\r
6641                               <id provider="uniprot">155892</id>\r
6642                               <code>CAUCR</code>\r
6643                               <scientific_name>Caulobacter crescentus</scientific_name>\r
6644                               <synonym>Caulobacter vibrioides</synonym>\r
6645                               <rank>species</rank>\r
6646                             </taxonomy>\r
6647                           </clade>\r
6648                         </clade>\r
6649                         <clade>\r
6650                           <name>b_70</name>\r
6651                           <taxonomy>\r
6652                             <id provider="uniprot">204441</id>\r
6653                             <scientific_name>Rhodospirillales</scientific_name>\r
6654                             <rank>order</rank>\r
6655                           </taxonomy>\r
6656                           <clade>\r
6657                             <taxonomy>\r
6658                               <id provider="uniprot">524</id>\r
6659                               <code>ACICY</code>\r
6660                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
6661                               <rank>species</rank>\r
6662                             </taxonomy>\r
6663                           </clade>\r
6664                           <clade>\r
6665                             <taxonomy>\r
6666                               <id provider="uniprot">1085</id>\r
6667                               <code>RHORU</code>\r
6668                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
6669                               <rank>species</rank>\r
6670                             </taxonomy>\r
6671                           </clade>\r
6672                         </clade>\r
6673                       </clade>\r
6674                     </clade>\r
6675                     <clade>\r
6676                       <name>b_79</name>\r
6677                       <clade>\r
6678                         <name>b_77</name>\r
6679                         <taxonomy>\r
6680                           <id provider="uniprot">1224</id>\r
6681                           <scientific_name>Proteobacteria</scientific_name>\r
6682                           <rank>phylum</rank>\r
6683                         </taxonomy>\r
6684                         <clade>\r
6685                           <name>b_75</name>\r
6686                           <taxonomy>\r
6687                             <id provider="uniprot">712</id>\r
6688                             <scientific_name>Pasteurellaceae</scientific_name>\r
6689                             <rank>family</rank>\r
6690                           </taxonomy>\r
6691                           <clade>\r
6692                             <taxonomy>\r
6693                               <id provider="uniprot">727</id>\r
6694                               <code>HAEIN</code>\r
6695                               <scientific_name>Haemophilus influenzae</scientific_name>\r
6696                               <rank>species</rank>\r
6697                             </taxonomy>\r
6698                           </clade>\r
6699                           <clade>\r
6700                             <taxonomy>\r
6701                               <id provider="uniprot">747</id>\r
6702                               <code>PASMU</code>\r
6703                               <scientific_name>Pasteurella multocida</scientific_name>\r
6704                               <rank>species</rank>\r
6705                             </taxonomy>\r
6706                           </clade>\r
6707                         </clade>\r
6708                         <clade>\r
6709                           <taxonomy>\r
6710                             <id provider="uniprot">487</id>\r
6711                             <code>NEIME</code>\r
6712                             <scientific_name>Neisseria meningitidis</scientific_name>\r
6713                             <rank>species</rank>\r
6714                           </taxonomy>\r
6715                         </clade>\r
6716                       </clade>\r
6717                       <clade>\r
6718                         <taxonomy>\r
6719                           <id provider="uniprot">905</id>\r
6720                           <code>ACIFE</code>\r
6721                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
6722                           <rank>species</rank>\r
6723                         </taxonomy>\r
6724                       </clade>\r
6725                     </clade>\r
6726                   </clade>\r
6727                   <clade>\r
6728                     <name>b_103</name>\r
6729                     <clade>\r
6730                       <name>b_91</name>\r
6731                       <taxonomy>\r
6732                         <id provider="uniprot">28221</id>\r
6733                         <scientific_name>Deltaproteobacteria</scientific_name>\r
6734                         <rank>class</rank>\r
6735                       </taxonomy>\r
6736                       <clade>\r
6737                         <name>b_87</name>\r
6738                         <clade>\r
6739                           <name>b_83</name>\r
6740                           <clade>\r
6741                             <taxonomy>\r
6742                               <id provider="uniprot">84980</id>\r
6743                               <code>DESPS</code>\r
6744                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
6745                               <rank>species</rank>\r
6746                             </taxonomy>\r
6747                           </clade>\r
6748                           <clade>\r
6749                             <taxonomy>\r
6750                               <id provider="uniprot">876</id>\r
6751                               <code>DESDE</code>\r
6752                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
6753                               <rank>species</rank>\r
6754                             </taxonomy>\r
6755                           </clade>\r
6756                         </clade>\r
6757                         <clade>\r
6758                           <taxonomy>\r
6759                             <id provider="uniprot">56780</id>\r
6760                             <code>SYNAS</code>\r
6761                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
6762                           </taxonomy>\r
6763                         </clade>\r
6764                       </clade>\r
6765                       <clade>\r
6766                         <name>b_90</name>\r
6767                         <taxonomy>\r
6768                           <id provider="uniprot">28231</id>\r
6769                           <scientific_name>Geobacter</scientific_name>\r
6770                           <rank>genus</rank>\r
6771                         </taxonomy>\r
6772                         <clade>\r
6773                           <taxonomy>\r
6774                             <id provider="uniprot">28232</id>\r
6775                             <code>GEOME</code>\r
6776                             <scientific_name>Geobacter metallireducens</scientific_name>\r
6777                             <rank>species</rank>\r
6778                           </taxonomy>\r
6779                         </clade>\r
6780                         <clade>\r
6781                           <taxonomy>\r
6782                             <id provider="uniprot">35554</id>\r
6783                             <code>GEOSL</code>\r
6784                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
6785                             <rank>species</rank>\r
6786                           </taxonomy>\r
6787                         </clade>\r
6788                       </clade>\r
6789                     </clade>\r
6790                     <clade>\r
6791                       <name>b_102</name>\r
6792                       <clade>\r
6793                         <name>b_98</name>\r
6794                         <clade>\r
6795                           <name>b_94</name>\r
6796                           <taxonomy>\r
6797                             <id provider="uniprot">31</id>\r
6798                             <scientific_name>Myxococcaceae</scientific_name>\r
6799                             <rank>family</rank>\r
6800                           </taxonomy>\r
6801                           <clade>\r
6802                             <taxonomy>\r
6803                               <id provider="uniprot">290397</id>\r
6804                               <code>ANADE</code>\r
6805                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
6806                             </taxonomy>\r
6807                           </clade>\r
6808                           <clade>\r
6809                             <taxonomy>\r
6810                               <id provider="uniprot">34</id>\r
6811                               <code>MYXXA</code>\r
6812                               <scientific_name>Myxococcus xanthus</scientific_name>\r
6813                               <rank>species</rank>\r
6814                             </taxonomy>\r
6815                           </clade>\r
6816                         </clade>\r
6817                         <clade>\r
6818                           <name>b_97</name>\r
6819                           <taxonomy>\r
6820                             <id provider="uniprot">57723</id>\r
6821                             <scientific_name>Acidobacteria</scientific_name>\r
6822                             <rank>phylum</rank>\r
6823                           </taxonomy>\r
6824                           <clade>\r
6825                             <taxonomy>\r
6826                               <id provider="uniprot">204669</id>\r
6827                               <code>KORVE</code>\r
6828                               <scientific_name>Koribacter versatilis (strain Ellin345)</scientific_name>\r
6829                               <synonym>Acidobacteria bacterium Ellin345</synonym>\r
6830                               <synonym>Candidatus Koribacter versatilis Ellin345</synonym>\r
6831                             </taxonomy>\r
6832                           </clade>\r
6833                           <clade>\r
6834                             <taxonomy>\r
6835                               <id provider="uniprot">332163</id>\r
6836                               <code>SOLUS</code>\r
6837                               <scientific_name>Solibacter usitatus</scientific_name>\r
6838                               <rank>species</rank>\r
6839                             </taxonomy>\r
6840                           </clade>\r
6841                         </clade>\r
6842                       </clade>\r
6843                       <clade>\r
6844                         <taxonomy>\r
6845                           <id provider="uniprot">265606</id>\r
6846                           <code>RHOBA</code>\r
6847                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
6848                           <rank>species</rank>\r
6849                         </taxonomy>\r
6850                       </clade>\r
6851                     </clade>\r
6852                   </clade>\r
6853                 </clade>\r
6854                 <clade>\r
6855                   <name>b_193</name>\r
6856                   <clade>\r
6857                     <name>b_163</name>\r
6858                     <clade>\r
6859                       <name>b_133</name>\r
6860                       <clade>\r
6861                         <name>Chloroflexi &amp; Actinobacteria</name>\r
6862                         <clade>\r
6863                           <taxonomy>\r
6864                             <id provider="uniprot">201174</id>\r
6865                             <scientific_name>Actinobacteria</scientific_name>\r
6866                             <rank>phylum</rank>\r
6867                           </taxonomy>\r
6868                           <clade>\r
6869                             <taxonomy>\r
6870                               <id provider="uniprot">2037</id>\r
6871                               <scientific_name>Actinomycetales</scientific_name>\r
6872                               <rank>order</rank>\r
6873                             </taxonomy>\r
6874                             <clade>\r
6875                               <name>b_115</name>\r
6876                               <clade>\r
6877                                 <taxonomy>\r
6878                                   <id provider="uniprot">266940</id>\r
6879                                   <code>KINRD</code>\r
6880                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
6881                                 </taxonomy>\r
6882                               </clade>\r
6883                               <clade>\r
6884                                 <taxonomy>\r
6885                                   <id provider="uniprot">378753</id>\r
6886                                   <code>KOCRD</code>\r
6887                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>\r
6888                                 </taxonomy>\r
6889                               </clade>\r
6890                               <clade>\r
6891                                 <taxonomy>\r
6892                                   <id provider="uniprot">1032480</id>\r
6893                                   <code>MICPN</code>\r
6894                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
6895                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
6896                                   <rank>strain</rank>\r
6897                                 </taxonomy>\r
6898                               </clade>\r
6899                               <clade>\r
6900                                 <taxonomy>\r
6901                                   <id provider="uniprot">1902</id>\r
6902                                   <code>STRCO</code>\r
6903                                   <scientific_name>Streptomyces coelicolor</scientific_name>\r
6904                                   <rank>species</rank>\r
6905                                 </taxonomy>\r
6906                               </clade>\r
6907                               <clade>\r
6908                                 <taxonomy>\r
6909                                   <id provider="uniprot">269800</id>\r
6910                                   <code>THEFY</code>\r
6911                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>\r
6912                                 </taxonomy>\r
6913                               </clade>\r
6914                             </clade>\r
6915                             <clade>\r
6916                               <taxonomy>\r
6917                                 <id provider="uniprot">85007</id>\r
6918                                 <scientific_name>Corynebacterineae</scientific_name>\r
6919                                 <rank>suborder</rank>\r
6920                               </taxonomy>\r
6921                               <clade>\r
6922                                 <taxonomy>\r
6923                                   <id provider="uniprot">1763</id>\r
6924                                   <scientific_name>Mycobacterium</scientific_name>\r
6925                                   <rank>genus</rank>\r
6926                                 </taxonomy>\r
6927                                 <clade>\r
6928                                   <taxonomy>\r
6929                                     <id provider="uniprot">1769</id>\r
6930                                     <code>MYCLE</code>\r
6931                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
6932                                     <rank>species</rank>\r
6933                                   </taxonomy>\r
6934                                 </clade>\r
6935                                 <clade>\r
6936                                   <taxonomy>\r
6937                                     <id provider="uniprot">1773</id>\r
6938                                     <code>MYCTU</code>\r
6939                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
6940                                     <rank>species</rank>\r
6941                                   </taxonomy>\r
6942                                 </clade>\r
6943                               </clade>\r
6944                               <clade>\r
6945                                 <taxonomy>\r
6946                                   <id provider="uniprot">306537</id>\r
6947                                   <code>CORJK</code>\r
6948                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>\r
6949                                 </taxonomy>\r
6950                               </clade>\r
6951                               <clade>\r
6952                                 <taxonomy>\r
6953                                   <id provider="uniprot">632772</id>\r
6954                                   <code>RHOOB</code>\r
6955                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
6956                                   <rank>strain</rank>\r
6957                                 </taxonomy>\r
6958                               </clade>\r
6959                             </clade>\r
6960                           </clade>\r
6961                           <clade>\r
6962                             <taxonomy>\r
6963                               <id provider="uniprot">266117</id>\r
6964                               <code>RUBXD</code>\r
6965                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
6966                             </taxonomy>\r
6967                           </clade>\r
6968                         </clade>\r
6969                         <clade>\r
6970                           <taxonomy>\r
6971                             <id provider="uniprot">200795</id>\r
6972                             <scientific_name>Chloroflexi</scientific_name>\r
6973                             <common_name>GNS bacteria</common_name>\r
6974                             <synonym>Thermomicrobia</synonym>\r
6975                             <rank>phylum</rank>\r
6976                           </taxonomy>\r
6977                           <clade>\r
6978                             <taxonomy>\r
6979                               <id provider="uniprot">32061</id>\r
6980                               <scientific_name>Chloroflexi (class)</scientific_name>\r
6981                               <synonym>Chloroflecales</synonym>\r
6982                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
6983                               <rank>class</rank>\r
6984                             </taxonomy>\r
6985                             <clade>\r
6986                               <taxonomy>\r
6987                                 <id provider="uniprot">1106</id>\r
6988                                 <scientific_name>Chloroflexaceae</scientific_name>\r
6989                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
6990                                 <rank>family</rank>\r
6991                               </taxonomy>\r
6992                               <clade>\r
6993                                 <taxonomy>\r
6994                                   <id provider="uniprot">1108</id>\r
6995                                   <code>CHLAU</code>\r
6996                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
6997                                   <rank>species</rank>\r
6998                                 </taxonomy>\r
6999                               </clade>\r
7000                               <clade>\r
7001                                 <taxonomy>\r
7002                                   <id provider="uniprot">383372</id>\r
7003                                   <code>ROSCS</code>\r
7004                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
7005                                   <rank>species</rank>\r
7006                                 </taxonomy>\r
7007                               </clade>\r
7008                             </clade>\r
7009                             <clade>\r
7010                               <taxonomy>\r
7011                                 <id provider="uniprot">65</id>\r
7012                                 <code>HERAU</code>\r
7013                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
7014                                 <synonym>Herpetosiphon giganteus</synonym>\r
7015                                 <rank>species</rank>\r
7016                               </taxonomy>\r
7017                             </clade>\r
7018                           </clade>\r
7019                           <clade>\r
7020                             <taxonomy>\r
7021                               <id provider="uniprot">479434</id>\r
7022                               <code>SPHTD</code>\r
7023                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
7024                               <rank>strain</rank>\r
7025                             </taxonomy>\r
7026                           </clade>\r
7027                         </clade>\r
7028                       </clade>\r
7029                       <clade>\r
7030                         <name>b_132</name>\r
7031                         <taxonomy>\r
7032                           <id provider="uniprot">188787</id>\r
7033                           <scientific_name>Deinococci</scientific_name>\r
7034                           <rank>class</rank>\r
7035                         </taxonomy>\r
7036                         <clade>\r
7037                           <taxonomy>\r
7038                             <id provider="uniprot">1298</id>\r
7039                             <scientific_name>Deinococcus</scientific_name>\r
7040                             <rank>genus</rank>\r
7041                           </taxonomy>\r
7042                           <clade>\r
7043                             <taxonomy>\r
7044                               <id provider="uniprot">319795</id>\r
7045                               <code>DEIGD</code>\r
7046                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
7047                             </taxonomy>\r
7048                           </clade>\r
7049                           <clade>\r
7050                             <taxonomy>\r
7051                               <id provider="uniprot">1299</id>\r
7052                               <code>DEIRA</code>\r
7053                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
7054                               <rank>species</rank>\r
7055                             </taxonomy>\r
7056                           </clade>\r
7057                         </clade>\r
7058                         <clade>\r
7059                           <taxonomy>\r
7060                             <id provider="uniprot">300852</id>\r
7061                             <code>THET8</code>\r
7062                             <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>\r
7063                             <rank>strain</rank>\r
7064                           </taxonomy>\r
7065                         </clade>\r
7066                       </clade>\r
7067                     </clade>\r
7068                     <clade>\r
7069                       <name>b_162</name>\r
7070                       <taxonomy>\r
7071                         <id provider="uniprot">1117</id>\r
7072                         <scientific_name>Cyanobacteria</scientific_name>\r
7073                         <rank>phylum</rank>\r
7074                       </taxonomy>\r
7075                       <clade>\r
7076                         <name>b_154</name>\r
7077                         <clade>\r
7078                           <name>b_152</name>\r
7079                           <clade>\r
7080                             <name>b_146</name>\r
7081                             <clade>\r
7082                               <name>b_144</name>\r
7083                               <clade>\r
7084                                 <name>b_142</name>\r
7085                                 <clade>\r
7086                                   <name>b_138</name>\r
7087                                   <taxonomy>\r
7088                                     <id provider="uniprot">1162</id>\r
7089                                     <scientific_name>Nostocaceae</scientific_name>\r
7090                                     <rank>family</rank>\r
7091                                   </taxonomy>\r
7092                                   <clade>\r
7093                                     <name>b_136</name>\r
7094                                     <clade>\r
7095                                       <taxonomy>\r
7096                                         <id provider="uniprot">240292</id>\r
7097                                         <code>ANAVT</code>\r
7098                                         <scientific_name>Anabaena variabilis (strain ATCC 29413 / PCC 7937)</scientific_name>\r
7099                                         <synonym>Anabaena flos-aquae (strain IUCC 1444)</synonym>\r
7100                                         <rank>strain</rank>\r
7101                                       </taxonomy>\r
7102                                     </clade>\r
7103                                     <clade>\r
7104                                       <taxonomy>\r
7105                                         <id provider="uniprot">28072</id>\r
7106                                         <code>NOSS7</code>\r
7107                                         <scientific_name>Nostoc sp. (strain ATCC 29411 / PCC 7524)</scientific_name>\r
7108                                         <rank>species</rank>\r
7109                                       </taxonomy>\r
7110                                     </clade>\r
7111                                   </clade>\r
7112                                   <clade>\r
7113                                     <taxonomy>\r
7114                                       <id provider="uniprot">63737</id>\r
7115                                       <code>NOSP7</code>\r
7116                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
7117                                       <rank>strain</rank>\r
7118                                     </taxonomy>\r
7119                                   </clade>\r
7120                                 </clade>\r
7121                                 <clade>\r
7122                                   <taxonomy>\r
7123                                     <id provider="uniprot">329726</id>\r
7124                                     <code>ACAM1</code>\r
7125                                     <scientific_name>Acaryochloris marina (strain MBIC 11017</scientific_name>\r
7126                                     <rank>strain</rank>\r
7127                                   </taxonomy>\r
7128                                 </clade>\r
7129                               </clade>\r
7130                               <clade>\r
7131                                 <taxonomy>\r
7132                                   <id provider="uniprot">449447</id>\r
7133                                   <code>MICAN</code>\r
7134                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
7135                                 </taxonomy>\r
7136                               </clade>\r
7137                             </clade>\r
7138                             <clade>\r
7139                               <taxonomy>\r
7140                                 <id provider="uniprot">1206</id>\r
7141                                 <code>TRIER</code>\r
7142                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
7143                                 <rank>species</rank>\r
7144                               </taxonomy>\r
7145                             </clade>\r
7146                           </clade>\r
7147                           <clade>\r
7148                             <taxonomy>\r
7149                               <id provider="uniprot">1118</id>\r
7150                               <scientific_name>Chroococcales</scientific_name>\r
7151                               <rank>order</rank>\r
7152                             </taxonomy>\r
7153                             <clade>\r
7154                               <taxonomy>\r
7155                                 <id provider="uniprot">32046</id>\r
7156                                 <code>SYNEL</code>\r
7157                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
7158                                 <rank>species</rank>\r
7159                               </taxonomy>\r
7160                             </clade>\r
7161                             <clade>\r
7162                               <taxonomy>\r
7163                                 <id provider="uniprot">1111708</id>\r
7164                                 <code>SYNY3</code>\r
7165                                 <scientific_name>Synechocystis sp. (strain PCC 6803 / Kazusa)</scientific_name>\r
7166                               </taxonomy>\r
7167                             </clade>\r
7168                           </clade>\r
7169                         </clade>\r
7170                         <clade>\r
7171                           <taxonomy>\r
7172                             <id provider="uniprot">33072</id>\r
7173                             <code>GLOVI</code>\r
7174                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
7175                             <rank>species</rank>\r
7176                           </taxonomy>\r
7177                         </clade>\r
7178                       </clade>\r
7179                       <clade>\r
7180                         <name>b_161</name>\r
7181                         <clade>\r
7182                           <name>b_159</name>\r
7183                           <taxonomy>\r
7184                             <id provider="uniprot">1218</id>\r
7185                             <scientific_name>Prochlorococcus</scientific_name>\r
7186                             <rank>genus</rank>\r
7187                           </taxonomy>\r
7188                           <clade>\r
7189                             <name>b_157</name>\r
7190                             <clade>\r
7191                               <taxonomy>\r
7192                                 <id provider="uniprot">1219</id>\r
7193                                 <code>PROMA</code>\r
7194                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
7195                                 <rank>species</rank>\r
7196                               </taxonomy>\r
7197                             </clade>\r
7198                             <clade>\r
7199                               <taxonomy>\r
7200                                 <id provider="uniprot">59919</id>\r
7201                                 <code>PROMP</code>\r
7202                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
7203                               </taxonomy>\r
7204                             </clade>\r
7205                           </clade>\r
7206                           <clade>\r
7207                             <taxonomy>\r
7208                               <id provider="uniprot">74547</id>\r
7209                               <code>PROMM</code>\r
7210                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
7211                             </taxonomy>\r
7212                           </clade>\r
7213                         </clade>\r
7214                         <clade>\r
7215                           <taxonomy>\r
7216                             <id provider="uniprot">64471</id>\r
7217                             <code>SYNS3</code>\r
7218                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
7219                             <rank>species</rank>\r
7220                           </taxonomy>\r
7221                         </clade>\r
7222                       </clade>\r
7223                     </clade>\r
7224                   </clade>\r
7225                   <clade>\r
7226                     <name>b_192</name>\r
7227                     <clade>\r
7228                       <name>b_190</name>\r
7229                       <clade>\r
7230                         <name>b_178</name>\r
7231                         <clade>\r
7232                           <name>b_176</name>\r
7233                           <taxonomy>\r
7234                             <id provider="uniprot">191412</id>\r
7235                             <scientific_name>Chlorobiaceae</scientific_name>\r
7236                             <rank>family</rank>\r
7237                           </taxonomy>\r
7238                           <clade>\r
7239                             <name>b_170</name>\r
7240                             <clade>\r
7241                               <name>b_166</name>\r
7242                               <clade>\r
7243                                 <taxonomy>\r
7244                                   <id provider="uniprot">331678</id>\r
7245                                   <code>CHLPB</code>\r
7246                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
7247                                 </taxonomy>\r
7248                               </clade>\r
7249                               <clade>\r
7250                                 <taxonomy>\r
7251                                   <id provider="uniprot">1102</id>\r
7252                                   <code>PROAE</code>\r
7253                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
7254                                   <rank>species</rank>\r
7255                                 </taxonomy>\r
7256                               </clade>\r
7257                             </clade>\r
7258                             <clade>\r
7259                               <name>b_169</name>\r
7260                               <taxonomy>\r
7261                                 <id provider="uniprot">274493</id>\r
7262                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
7263                               </taxonomy>\r
7264                               <clade>\r
7265                                 <taxonomy>\r
7266                                   <id provider="uniprot">1100</id>\r
7267                                   <code>PELLU</code>\r
7268                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
7269                                   <rank>species</rank>\r
7270                                 </taxonomy>\r
7271                               </clade>\r
7272                               <clade>\r
7273                                 <taxonomy>\r
7274                                   <id provider="uniprot">290318</id>\r
7275                                   <code>PROVI</code>\r
7276                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
7277                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
7278                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
7279                                 </taxonomy>\r
7280                               </clade>\r
7281                             </clade>\r
7282                           </clade>\r
7283                           <clade>\r
7284                             <name>b_175</name>\r
7285                             <clade>\r
7286                               <taxonomy>\r
7287                                 <id provider="uniprot">256319</id>\r
7288                                 <scientific_name>Chlorobaculum</scientific_name>\r
7289                                 <rank>genus</rank>\r
7290                               </taxonomy>\r
7291                               <clade>\r
7292                                 <taxonomy>\r
7293                                   <id provider="uniprot">517417</id>\r
7294                                   <code>CHLP8</code>\r
7295                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
7296                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
7297                                 </taxonomy>\r
7298                               </clade>\r
7299                               <clade>\r
7300                                 <taxonomy>\r
7301                                   <id provider="uniprot">1097</id>\r
7302                                   <code>CHLTE</code>\r
7303                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
7304                                   <rank>species</rank>\r
7305                                 </taxonomy>\r
7306                               </clade>\r
7307                             </clade>\r
7308                             <clade>\r
7309                               <taxonomy>\r
7310                                 <id provider="uniprot">340177</id>\r
7311                                 <code>CHLCH</code>\r
7312                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
7313                               </taxonomy>\r
7314                             </clade>\r
7315                           </clade>\r
7316                         </clade>\r
7317                         <clade>\r
7318                           <taxonomy>\r
7319                             <id provider="uniprot">315277</id>\r
7320                             <code>CHLTA</code>\r
7321                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
7322                           </taxonomy>\r
7323                         </clade>\r
7324                       </clade>\r
7325                       <clade>\r
7326                         <name>b_189</name>\r
7327                         <taxonomy>\r
7328                           <id provider="uniprot">976</id>\r
7329                           <scientific_name>Bacteroidetes</scientific_name>\r
7330                           <rank>phylum</rank>\r
7331                         </taxonomy>\r
7332                         <clade>\r
7333                           <name>b_183</name>\r
7334                           <clade>\r
7335                             <name>b_181</name>\r
7336                             <taxonomy>\r
7337                               <id provider="uniprot">49546</id>\r
7338                               <scientific_name>Flavobacteriaceae</scientific_name>\r
7339                               <rank>family</rank>\r
7340                             </taxonomy>\r
7341                             <clade>\r
7342                               <taxonomy>\r
7343                                 <id provider="uniprot">986</id>\r
7344                                 <code>FLAJO</code>\r
7345                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
7346                                 <synonym>Cytophaga johnsonae</synonym>\r
7347                                 <rank>species</rank>\r
7348                               </taxonomy>\r
7349                             </clade>\r
7350                             <clade>\r
7351                               <taxonomy>\r
7352                                 <id provider="uniprot">411154</id>\r
7353                                 <code>GRAFK</code>\r
7354                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
7355                               </taxonomy>\r
7356                             </clade>\r
7357                           </clade>\r
7358                           <clade>\r
7359                             <taxonomy>\r
7360                               <id provider="uniprot">269798</id>\r
7361                               <code>CYTH3</code>\r
7362                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
7363                             </taxonomy>\r
7364                           </clade>\r
7365                         </clade>\r
7366                         <clade>\r
7367                           <name>b_188</name>\r
7368                           <taxonomy>\r
7369                             <id provider="uniprot">171549</id>\r
7370                             <scientific_name>Bacteroidales</scientific_name>\r
7371                             <rank>order</rank>\r
7372                           </taxonomy>\r
7373                           <clade>\r
7374                             <name>b_186</name>\r
7375                             <taxonomy>\r
7376                               <id provider="uniprot">816</id>\r
7377                               <scientific_name>Bacteroides</scientific_name>\r
7378                               <rank>genus</rank>\r
7379                             </taxonomy>\r
7380                             <clade>\r
7381                               <taxonomy>\r
7382                                 <id provider="uniprot">817</id>\r
7383                                 <code>BACFR</code>\r
7384                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
7385                                 <rank>species</rank>\r
7386                               </taxonomy>\r
7387                             </clade>\r
7388                             <clade>\r
7389                               <taxonomy>\r
7390                                 <id provider="uniprot">818</id>\r
7391                                 <code>BACTN</code>\r
7392                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
7393                                 <rank>species</rank>\r
7394                               </taxonomy>\r
7395                             </clade>\r
7396                           </clade>\r
7397                           <clade>\r
7398                             <taxonomy>\r
7399                               <id provider="uniprot">837</id>\r
7400                               <code>PORGI</code>\r
7401                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
7402                               <synonym>Bacteroides gingivalis</synonym>\r
7403                               <rank>species</rank>\r
7404                             </taxonomy>\r
7405                           </clade>\r
7406                         </clade>\r
7407                       </clade>\r
7408                     </clade>\r
7409                     <clade>\r
7410                       <taxonomy>\r
7411                         <id provider="uniprot">309807</id>\r
7412                         <code>SALRD</code>\r
7413                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
7414                       </taxonomy>\r
7415                     </clade>\r
7416                   </clade>\r
7417                 </clade>\r
7418               </clade>\r
7419               <clade>\r
7420                 <name>b_199</name>\r
7421                 <clade>\r
7422                   <name>b_197</name>\r
7423                   <taxonomy>\r
7424                     <scientific_name>Verrucomicrobia</scientific_name>\r
7425                   </taxonomy>\r
7426                   <clade>\r
7427                     <taxonomy>\r
7428                       <id provider="uniprot">349741</id>\r
7429                       <code>AKKM8</code>\r
7430                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
7431                     </taxonomy>\r
7432                   </clade>\r
7433                   <clade>\r
7434                     <taxonomy>\r
7435                       <id provider="uniprot">481448</id>\r
7436                       <code>METI4</code>\r
7437                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
7438                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
7439                     </taxonomy>\r
7440                   </clade>\r
7441                 </clade>\r
7442                 <clade>\r
7443                   <taxonomy>\r
7444                     <id provider="uniprot">44275</id>\r
7445                     <code>LEPIC</code>\r
7446                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
7447                   </taxonomy>\r
7448                 </clade>\r
7449               </clade>\r
7450             </clade>\r
7451             <clade>\r
7452               <name>b_225</name>\r
7453               <clade>\r
7454                 <name>b_219</name>\r
7455                 <taxonomy>\r
7456                   <id provider="uniprot">1239</id>\r
7457                   <scientific_name>Firmicutes</scientific_name>\r
7458                   <rank>phylum</rank>\r
7459                 </taxonomy>\r
7460                 <clade>\r
7461                   <name>b_213</name>\r
7462                   <clade>\r
7463                     <taxonomy>\r
7464                       <id provider="uniprot">1385</id>\r
7465                       <scientific_name>Bacillales</scientific_name>\r
7466                       <rank>order</rank>\r
7467                     </taxonomy>\r
7468                     <clade>\r
7469                       <taxonomy>\r
7470                         <id provider="uniprot">186817</id>\r
7471                         <scientific_name>Bacillaceae</scientific_name>\r
7472                         <rank>family</rank>\r
7473                       </taxonomy>\r
7474                       <clade>\r
7475                         <taxonomy>\r
7476                           <id provider="uniprot">1386</id>\r
7477                           <scientific_name>Bacillus</scientific_name>\r
7478                           <rank>genus</rank>\r
7479                         </taxonomy>\r
7480                         <clade>\r
7481                           <taxonomy>\r
7482                             <id provider="uniprot">86661</id>\r
7483                             <scientific_name>Bacillus cereus group</scientific_name>\r
7484                           </taxonomy>\r
7485                           <clade>\r
7486                             <taxonomy>\r
7487                               <id provider="uniprot">1392</id>\r
7488                               <code>BACAN</code>\r
7489                               <scientific_name>Bacillus anthracis</scientific_name>\r
7490                               <rank>species</rank>\r
7491                             </taxonomy>\r
7492                           </clade>\r
7493                           <clade>\r
7494                             <taxonomy>\r
7495                               <id provider="uniprot">572264</id>\r
7496                               <code>BACC3</code>\r
7497                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
7498                               <rank>strain</rank>\r
7499                             </taxonomy>\r
7500                           </clade>\r
7501                         </clade>\r
7502                         <clade>\r
7503                           <taxonomy>\r
7504                             <id provider="uniprot">224308</id>\r
7505                             <code>BACSU</code>\r
7506                             <scientific_name>Bacillus subtilis (strain 168)</scientific_name>\r
7507                             <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>\r
7508                           </taxonomy>\r
7509                         </clade>\r
7510                       </clade>\r
7511                       <clade>\r
7512                         <name>b_206</name>\r
7513                         <clade>\r
7514                           <taxonomy>\r
7515                             <id provider="uniprot">86665</id>\r
7516                             <code>BACHD</code>\r
7517                             <scientific_name>Bacillus halodurans</scientific_name>\r
7518                             <rank>species</rank>\r
7519                           </taxonomy>\r
7520                         </clade>\r
7521                         <clade>\r
7522                           <taxonomy>\r
7523                             <id provider="uniprot">1462</id>\r
7524                             <code>GEOKA</code>\r
7525                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
7526                             <rank>species</rank>\r
7527                           </taxonomy>\r
7528                         </clade>\r
7529                       </clade>\r
7530                     </clade>\r
7531                     <clade>\r
7532                       <name>b_210</name>\r
7533                       <clade>\r
7534                         <taxonomy>\r
7535                           <id provider="uniprot">1639</id>\r
7536                           <code>LISMO</code>\r
7537                           <scientific_name>Listeria monocytogenes</scientific_name>\r
7538                           <rank>species</rank>\r
7539                         </taxonomy>\r
7540                       </clade>\r
7541                       <clade>\r
7542                         <taxonomy>\r
7543                           <id provider="uniprot">1280</id>\r
7544                           <code>STAAU</code>\r
7545                           <scientific_name>Staphylococcus aureus</scientific_name>\r
7546                           <rank>species</rank>\r
7547                         </taxonomy>\r
7548                       </clade>\r
7549                     </clade>\r
7550                   </clade>\r
7551                   <clade>\r
7552                     <taxonomy>\r
7553                       <id provider="uniprot">195103</id>\r
7554                       <code>CLOP1</code>\r
7555                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
7556                     </taxonomy>\r
7557                   </clade>\r
7558                 </clade>\r
7559                 <clade>\r
7560                   <name>Clostridia</name>\r
7561                   <taxonomy>\r
7562                     <id provider="uniprot">186801</id>\r
7563                     <scientific_name>Clostridia</scientific_name>\r
7564                     <rank>class</rank>\r
7565                   </taxonomy>\r
7566                   <clade>\r
7567                     <name>b_218</name>\r
7568                     <clade>\r
7569                       <name>b_216</name>\r
7570                       <taxonomy>\r
7571                         <id provider="uniprot">186814</id>\r
7572                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
7573                         <rank>family</rank>\r
7574                       </taxonomy>\r
7575                       <clade>\r
7576                         <taxonomy>\r
7577                           <id provider="uniprot">246194</id>\r
7578                           <code>CARHZ</code>\r
7579                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
7580                         </taxonomy>\r
7581                       </clade>\r
7582                       <clade>\r
7583                         <taxonomy>\r
7584                           <id provider="uniprot">119072</id>\r
7585                           <code>THETN</code>\r
7586                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
7587                           <rank>species</rank>\r
7588                         </taxonomy>\r
7589                       </clade>\r
7590                     </clade>\r
7591                     <clade>\r
7592                       <taxonomy>\r
7593                         <id provider="uniprot">49338</id>\r
7594                         <code>DESHA</code>\r
7595                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
7596                         <synonym>Desulfitobacterium frappieri</synonym>\r
7597                         <rank>species</rank>\r
7598                       </taxonomy>\r
7599                     </clade>\r
7600                   </clade>\r
7601                   <clade>\r
7602                     <taxonomy>\r
7603                       <id provider="uniprot">515619</id>\r
7604                       <code>EUBR3</code>\r
7605                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
7606                     </taxonomy>\r
7607                   </clade>\r
7608                 </clade>\r
7609               </clade>\r
7610               <clade>\r
7611                 <name>b_224</name>\r
7612                 <taxonomy>\r
7613                   <id provider="uniprot">188709</id>\r
7614                   <scientific_name>Thermotogaceae</scientific_name>\r
7615                   <rank>family</rank>\r
7616                 </taxonomy>\r
7617                 <clade>\r
7618                   <name>b_222</name>\r
7619                   <clade>\r
7620                     <taxonomy>\r
7621                       <id provider="uniprot">381764</id>\r
7622                       <code>FERNB</code>\r
7623                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
7624                     </taxonomy>\r
7625                   </clade>\r
7626                   <clade>\r
7627                     <taxonomy>\r
7628                       <id provider="uniprot">416591</id>\r
7629                       <code>THELT</code>\r
7630                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
7631                     </taxonomy>\r
7632                   </clade>\r
7633                 </clade>\r
7634                 <clade>\r
7635                   <taxonomy>\r
7636                     <id provider="uniprot">2336</id>\r
7637                     <code>THEMA</code>\r
7638                     <scientific_name>Thermotoga maritima</scientific_name>\r
7639                     <rank>species</rank>\r
7640                   </taxonomy>\r
7641                 </clade>\r
7642               </clade>\r
7643             </clade>\r
7644           </clade>\r
7645           <clade>\r
7646             <name>b_267</name>\r
7647             <clade>\r
7648               <name>b_263</name>\r
7649               <clade>\r
7650                 <name>b_251</name>\r
7651                 <clade>\r
7652                   <name>b_249</name>\r
7653                   <clade>\r
7654                     <name>b_245</name>\r
7655                     <clade>\r
7656                       <name>b_237</name>\r
7657                       <clade>\r
7658                         <name>b_233</name>\r
7659                         <taxonomy>\r
7660                           <id provider="uniprot">31969</id>\r
7661                           <scientific_name>Mollicutes</scientific_name>\r
7662                           <rank>class</rank>\r
7663                         </taxonomy>\r
7664                         <clade>\r
7665                           <name>b_231</name>\r
7666                           <clade>\r
7667                             <name>b_229</name>\r
7668                             <taxonomy>\r
7669                               <scientific_name>Mycoplasma</scientific_name>\r
7670                             </taxonomy>\r
7671                             <clade>\r
7672                               <taxonomy>\r
7673                                 <id provider="uniprot">2097</id>\r
7674                                 <code>MYCGE</code>\r
7675                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
7676                                 <rank>species</rank>\r
7677                               </taxonomy>\r
7678                             </clade>\r
7679                             <clade>\r
7680                               <taxonomy>\r
7681                                 <id provider="uniprot">2104</id>\r
7682                                 <code>MYCPN</code>\r
7683                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
7684                                 <rank>species</rank>\r
7685                               </taxonomy>\r
7686                             </clade>\r
7687                           </clade>\r
7688                           <clade>\r
7689                             <taxonomy>\r
7690                               <id provider="uniprot">2151</id>\r
7691                               <code>MESFL</code>\r
7692                               <scientific_name>Mesoplasma florum</scientific_name>\r
7693                               <synonym>Acholeplasma florum</synonym>\r
7694                               <rank>species</rank>\r
7695                             </taxonomy>\r
7696                           </clade>\r
7697                         </clade>\r
7698                         <clade>\r
7699                           <taxonomy>\r
7700                             <id provider="uniprot">134821</id>\r
7701                             <code>UREPA</code>\r
7702                             <scientific_name>Ureaplasma parvum</scientific_name>\r
7703                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
7704                             <rank>species</rank>\r
7705                           </taxonomy>\r
7706                         </clade>\r
7707                       </clade>\r
7708                       <clade>\r
7709                         <name>b_236</name>\r
7710                         <taxonomy>\r
7711                           <id provider="uniprot">137</id>\r
7712                           <scientific_name>Spirochaetaceae</scientific_name>\r
7713                           <rank>family</rank>\r
7714                         </taxonomy>\r
7715                         <clade>\r
7716                           <taxonomy>\r
7717                             <id provider="uniprot">139</id>\r
7718                             <code>BORBU</code>\r
7719                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
7720                             <common_name>Lyme disease spirochete</common_name>\r
7721                             <rank>species</rank>\r
7722                           </taxonomy>\r
7723                         </clade>\r
7724                         <clade>\r
7725                           <taxonomy>\r
7726                             <id provider="uniprot">160</id>\r
7727                             <code>TREPA</code>\r
7728                             <scientific_name>Treponema pallidum</scientific_name>\r
7729                             <rank>species</rank>\r
7730                           </taxonomy>\r
7731                         </clade>\r
7732                       </clade>\r
7733                     </clade>\r
7734                     <clade>\r
7735                       <name>b_244</name>\r
7736                       <clade>\r
7737                         <name>b_242</name>\r
7738                         <taxonomy>\r
7739                           <id provider="uniprot">1113537</id>\r
7740                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
7741                         </taxonomy>\r
7742                         <clade>\r
7743                           <name>b_240</name>\r
7744                           <clade>\r
7745                             <taxonomy>\r
7746                               <id provider="uniprot">83558</id>\r
7747                               <code>CHLPN</code>\r
7748                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
7749                               <synonym>Chlamydophila pneumoniae</synonym>\r
7750                               <rank>species</rank>\r
7751                             </taxonomy>\r
7752                           </clade>\r
7753                           <clade>\r
7754                             <taxonomy>\r
7755                               <id provider="uniprot">264202</id>\r
7756                               <code>CHLFF</code>\r
7757                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
7758                             </taxonomy>\r
7759                           </clade>\r
7760                         </clade>\r
7761                         <clade>\r
7762                           <taxonomy>\r
7763                             <id provider="uniprot">83560</id>\r
7764                             <code>CHLMU</code>\r
7765                             <scientific_name>Chlamydia muridarum</scientific_name>\r
7766                             <rank>species</rank>\r
7767                           </taxonomy>\r
7768                         </clade>\r
7769                       </clade>\r
7770                       <clade>\r
7771                         <taxonomy>\r
7772                           <id provider="uniprot">785</id>\r
7773                           <code>RICTY</code>\r
7774                           <scientific_name>Rickettsia typhi</scientific_name>\r
7775                           <rank>species</rank>\r
7776                         </taxonomy>\r
7777                       </clade>\r
7778                     </clade>\r
7779                   </clade>\r
7780                   <clade>\r
7781                     <taxonomy>\r
7782                       <id provider="uniprot">28211</id>\r
7783                       <scientific_name>Alphaproteobacteria</scientific_name>\r
7784                       <rank>class</rank>\r
7785                     </taxonomy>\r
7786                     <clade>\r
7787                       <taxonomy>\r
7788                         <id provider="uniprot">38323</id>\r
7789                         <code>BARHE</code>\r
7790                         <scientific_name>Bartonella henselae</scientific_name>\r
7791                         <synonym>Rochalimaea henselae</synonym>\r
7792                         <rank>species</rank>\r
7793                       </taxonomy>\r
7794                     </clade>\r
7795                     <clade>\r
7796                       <taxonomy>\r
7797                         <id provider="uniprot">198252</id>\r
7798                         <code>PELUB</code>\r
7799                         <scientific_name>Pelagibacter ubique</scientific_name>\r
7800                         <rank>species</rank>\r
7801                       </taxonomy>\r
7802                     </clade>\r
7803                     <clade>\r
7804                       <taxonomy>\r
7805                         <id provider="uniprot">780</id>\r
7806                         <scientific_name>Rickettsia</scientific_name>\r
7807                         <rank>genus</rank>\r
7808                       </taxonomy>\r
7809                       <clade>\r
7810                         <taxonomy>\r
7811                           <id provider="uniprot">391896</id>\r
7812                           <code>RICB8</code>\r
7813                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
7814                         </taxonomy>\r
7815                       </clade>\r
7816                       <clade>\r
7817                         <taxonomy>\r
7818                           <id provider="uniprot">452659</id>\r
7819                           <code>RICRO</code>\r
7820                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
7821                           <rank>strain</rank>\r
7822                         </taxonomy>\r
7823                       </clade>\r
7824                     </clade>\r
7825                   </clade>\r
7826                 </clade>\r
7827                 <clade>\r
7828                   <taxonomy>\r
7829                     <id provider="uniprot">263</id>\r
7830                     <code>FRATU</code>\r
7831                     <scientific_name>Francisella tularensis</scientific_name>\r
7832                     <rank>species</rank>\r
7833                   </taxonomy>\r
7834                 </clade>\r
7835               </clade>\r
7836               <clade>\r
7837                 <name>b_262</name>\r
7838                 <clade>\r
7839                   <name>b_260</name>\r
7840                   <clade>\r
7841                     <name>b_258</name>\r
7842                     <taxonomy>\r
7843                       <id provider="uniprot">186826</id>\r
7844                       <scientific_name>Lactobacillales</scientific_name>\r
7845                       <rank>order</rank>\r
7846                     </taxonomy>\r
7847                     <clade>\r
7848                       <name>b_256</name>\r
7849                       <taxonomy>\r
7850                         <id provider="uniprot">1300</id>\r
7851                         <scientific_name>Streptococcaceae</scientific_name>\r
7852                         <rank>family</rank>\r
7853                       </taxonomy>\r
7854                       <clade>\r
7855                         <name>b_254</name>\r
7856                         <taxonomy>\r
7857                           <id provider="uniprot">1301</id>\r
7858                           <scientific_name>Streptococcus</scientific_name>\r
7859                           <rank>genus</rank>\r
7860                         </taxonomy>\r
7861                         <clade>\r
7862                           <taxonomy>\r
7863                             <id provider="uniprot">1313</id>\r
7864                             <code>STRPN</code>\r
7865                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
7866                             <rank>species</rank>\r
7867                           </taxonomy>\r
7868                         </clade>\r
7869                         <clade>\r
7870                           <taxonomy>\r
7871                             <id provider="uniprot">1314</id>\r
7872                             <code>STRPY</code>\r
7873                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
7874                             <rank>species</rank>\r
7875                           </taxonomy>\r
7876                         </clade>\r
7877                       </clade>\r
7878                       <clade>\r
7879                         <taxonomy>\r
7880                           <id provider="uniprot">1360</id>\r
7881                           <code>LACLA</code>\r
7882                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
7883                           <synonym>Streptococcus lactis</synonym>\r
7884                           <rank>subspecies</rank>\r
7885                         </taxonomy>\r
7886                       </clade>\r
7887                     </clade>\r
7888                     <clade>\r
7889                       <taxonomy>\r
7890                         <id provider="uniprot">1579</id>\r
7891                         <code>LACAC</code>\r
7892                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
7893                         <rank>species</rank>\r
7894                       </taxonomy>\r
7895                     </clade>\r
7896                   </clade>\r
7897                   <clade>\r
7898                     <taxonomy>\r
7899                       <id provider="uniprot">216816</id>\r
7900                       <code>BIFLO</code>\r
7901                       <scientific_name>Bifidobacterium longum</scientific_name>\r
7902                       <rank>species</rank>\r
7903                     </taxonomy>\r
7904                   </clade>\r
7905                 </clade>\r
7906                 <clade>\r
7907                   <taxonomy>\r
7908                     <id provider="uniprot">851</id>\r
7909                     <code>FUSNU</code>\r
7910                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
7911                     <rank>species</rank>\r
7912                   </taxonomy>\r
7913                 </clade>\r
7914               </clade>\r
7915             </clade>\r
7916             <clade>\r
7917               <name>b_266</name>\r
7918               <taxonomy>\r
7919                 <id provider="uniprot">61434</id>\r
7920                 <scientific_name>Dehalococcoides</scientific_name>\r
7921                 <rank>genus</rank>\r
7922               </taxonomy>\r
7923               <clade>\r
7924                 <taxonomy>\r
7925                   <id provider="uniprot">243164</id>\r
7926                   <code>DEHE1</code>\r
7927                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
7928                 </taxonomy>\r
7929               </clade>\r
7930               <clade>\r
7931                 <taxonomy>\r
7932                   <id provider="uniprot">216389</id>\r
7933                   <code>DEHSB</code>\r
7934                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
7935                   <rank>species</rank>\r
7936                 </taxonomy>\r
7937               </clade>\r
7938             </clade>\r
7939           </clade>\r
7940         </clade>\r
7941         <clade>\r
7942           <name>b_277</name>\r
7943           <taxonomy>\r
7944             <id provider="uniprot">29547</id>\r
7945             <scientific_name>Epsilonproteobacteria</scientific_name>\r
7946             <rank>class</rank>\r
7947           </taxonomy>\r
7948           <clade>\r
7949             <name>b_273</name>\r
7950             <clade>\r
7951               <taxonomy>\r
7952                 <id provider="uniprot">387092</id>\r
7953                 <code>NITSB</code>\r
7954                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
7955                 <rank>species</rank>\r
7956               </taxonomy>\r
7957             </clade>\r
7958             <clade>\r
7959               <taxonomy>\r
7960                 <id provider="uniprot">387093</id>\r
7961                 <code>SULNB</code>\r
7962                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
7963                 <rank>species</rank>\r
7964               </taxonomy>\r
7965             </clade>\r
7966           </clade>\r
7967           <clade>\r
7968             <name>b_276</name>\r
7969             <taxonomy>\r
7970               <id provider="uniprot">213849</id>\r
7971               <scientific_name>Campylobacterales</scientific_name>\r
7972               <rank>order</rank>\r
7973             </taxonomy>\r
7974             <clade>\r
7975               <taxonomy>\r
7976                 <id provider="uniprot">197</id>\r
7977                 <code>CAMJE</code>\r
7978                 <scientific_name>Campylobacter jejuni</scientific_name>\r
7979                 <rank>species</rank>\r
7980               </taxonomy>\r
7981             </clade>\r
7982             <clade>\r
7983               <taxonomy>\r
7984                 <id provider="uniprot">357544</id>\r
7985                 <code>HELPH</code>\r
7986                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
7987               </taxonomy>\r
7988             </clade>\r
7989           </clade>\r
7990         </clade>\r
7991       </clade>\r
7992       <clade>\r
7993         <taxonomy>\r
7994           <id provider="uniprot">224324</id>\r
7995           <code>AQUAE</code>\r
7996           <scientific_name>Aquifex aeolicus (strain VF5)</scientific_name>\r
7997           <rank>strain</rank>\r
7998         </taxonomy>\r
7999       </clade>\r
8000     </clade>\r
8001   </clade>\r
8002 </phylogeny>\r
8003 </phyloxml>