in progress...
[jalview.git] / forester / data / tol_156.xml
1 <?xml version="1.0" encoding="UTF-8"?>\r
2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
3 <phylogeny rooted="true" rerootable="false">\r
4   <name>tol_156</name>\r
5   <clade>\r
6     <taxonomy>\r
7       <id provider="uniprot">131567</id>\r
8       <scientific_name>cellular organisms</scientific_name>\r
9     </taxonomy>\r
10     <clade>\r
11       <taxonomy>\r
12         <scientific_name>Neomura</scientific_name>\r
13       </taxonomy>\r
14       <clade>\r
15         <taxonomy>\r
16           <id provider="uniprot">2759</id>\r
17           <scientific_name>Eukaryota</scientific_name>\r
18           <rank>superkingdom</rank>\r
19         </taxonomy>\r
20         <clade>\r
21           <name>Unikonta</name>\r
22           <clade>\r
23             <taxonomy>\r
24               <id provider="uniprot">33154</id>\r
25               <scientific_name>Opisthokonta</scientific_name>\r
26               <common_name>Fungi/Metazoa group</common_name>\r
27             </taxonomy>\r
28             <clade>\r
29               <taxonomy>\r
30                 <scientific_name>Holozoa</scientific_name>\r
31               </taxonomy>\r
32               <clade>\r
33                 <name>Choanoflagellatea &amp; Metazoa</name>\r
34                 <clade>\r
35                   <taxonomy>\r
36                     <id provider="uniprot">33208</id>\r
37                     <scientific_name>Metazoa</scientific_name>\r
38                     <rank>kingdom</rank>\r
39                   </taxonomy>\r
40                   <clade>\r
41                     <taxonomy>\r
42                       <id provider="uniprot">6072</id>\r
43                       <scientific_name>Eumetazoa</scientific_name>\r
44                     </taxonomy>\r
45                     <reference doi="10.1038/nature06614">\r
46                     </reference>\r
47                     <clade>\r
48                       <name>Bilateria &amp; Cnidaria</name>\r
49                       <clade>\r
50                         <taxonomy>\r
51                           <id provider="uniprot">33213</id>\r
52                           <scientific_name>Bilateria</scientific_name>\r
53                         </taxonomy>\r
54                         <clade>\r
55                           <taxonomy>\r
56                             <id provider="uniprot">33511</id>\r
57                             <scientific_name>Deuterostomia</scientific_name>\r
58                           </taxonomy>\r
59                           <reference doi="10.1038/nature04336">\r
60                           </reference>\r
61                           <clade>\r
62                             <taxonomy>\r
63                               <id provider="uniprot">7711</id>\r
64                               <scientific_name>Chordata</scientific_name>\r
65                               <rank>phylum</rank>\r
66                             </taxonomy>\r
67                             <clade>\r
68                               <name>Urochordata &amp; Vertebrata</name>\r
69                               <clade>\r
70                                 <taxonomy>\r
71                                   <id provider="uniprot">7742</id>\r
72                                   <scientific_name>Vertebrata</scientific_name>\r
73                                 </taxonomy>\r
74                                 <clade>\r
75                                   <taxonomy>\r
76                                     <id provider="uniprot">7776</id>\r
77                                     <scientific_name>Gnathostomata</scientific_name>\r
78                                     <common_name>jawed vertebrates</common_name>\r
79                                     <rank>superclass</rank>\r
80                                   </taxonomy>\r
81                                   <clade>\r
82                                     <taxonomy>\r
83                                       <id provider="uniprot">117571</id>\r
84                                       <scientific_name>Euteleostomi</scientific_name>\r
85                                       <common_name>bony vertebrates</common_name>\r
86                                     </taxonomy>\r
87                                     <clade>\r
88                                       <taxonomy>\r
89                                         <id provider="uniprot">8287</id>\r
90                                         <scientific_name>Sarcopterygii</scientific_name>\r
91                                         <common_name>lobe-finned fish</common_name>\r
92                                       </taxonomy>\r
93                                       <clade>\r
94                                         <taxonomy>\r
95                                           <id provider="uniprot">32523</id>\r
96                                           <scientific_name>Tetrapoda</scientific_name>\r
97                                         </taxonomy>\r
98                                         <clade>\r
99                                           <taxonomy>\r
100                                             <id provider="uniprot">32524</id>\r
101                                             <scientific_name>Amniota</scientific_name>\r
102                                           </taxonomy>\r
103                                           <clade>\r
104                                             <taxonomy>\r
105                                               <id provider="uniprot">40674</id>\r
106                                               <scientific_name>Mammalia</scientific_name>\r
107                                               <rank>class</rank>\r
108                                             </taxonomy>\r
109                                             <clade>\r
110                                               <name>Theria</name>\r
111                                               <clade>\r
112                                                 <taxonomy>\r
113                                                   <id provider="uniprot">9347</id>\r
114                                                   <scientific_name>Eutheria</scientific_name>\r
115                                                   <common_name>Placental mammals</common_name>\r
116                                                 </taxonomy>\r
117                                                 <reference doi="10.1002/bies.200900053">\r
118                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
119                                                 </reference>\r
120                                                 <clade>\r
121                                                   <taxonomy>\r
122                                                     <scientific_name>Boreoeutheria</scientific_name>\r
123                                                     <synonym>Boreotheria</synonym>\r
124                                                   </taxonomy>\r
125                                                   <clade>\r
126                                                     <taxonomy>\r
127                                                       <id provider="uniprot">314146</id>\r
128                                                       <scientific_name>Euarchontoglires</scientific_name>\r
129                                                       <rank>superorder</rank>\r
130                                                     </taxonomy>\r
131                                                     <clade>\r
132                                                       <taxonomy>\r
133                                                         <scientific_name>Euarchonta</scientific_name>\r
134                                                       </taxonomy>\r
135                                                       <clade>\r
136                                                         <taxonomy>\r
137                                                           <id provider="uniprot">9443</id>\r
138                                                           <scientific_name>Primates</scientific_name>\r
139                                                           <rank>order</rank>\r
140                                                         </taxonomy>\r
141                                                         <clade>\r
142                                                           <taxonomy>\r
143                                                             <id provider="uniprot">376913</id>\r
144                                                             <scientific_name>Haplorrhini</scientific_name>\r
145                                                             <rank>suborder</rank>\r
146                                                           </taxonomy>\r
147                                                           <clade>\r
148                                                             <taxonomy>\r
149                                                               <id provider="uniprot">314293</id>\r
150                                                               <scientific_name>Simiiformes</scientific_name>\r
151                                                               <rank>infraorder</rank>\r
152                                                             </taxonomy>\r
153                                                             <clade>\r
154                                                               <taxonomy>\r
155                                                                 <id provider="uniprot">9526</id>\r
156                                                                 <scientific_name>Catarrhini</scientific_name>\r
157                                                               </taxonomy>\r
158                                                               <clade>\r
159                                                                 <taxonomy>\r
160                                                                   <id provider="uniprot">314295</id>\r
161                                                                   <scientific_name>Hominoidea</scientific_name>\r
162                                                                   <common_name>Apes</common_name>\r
163                                                                   <rank>superfamily</rank>\r
164                                                                 </taxonomy>\r
165                                                                 <clade>\r
166                                                                   <taxonomy>\r
167                                                                     <id provider="uniprot">9604</id>\r
168                                                                     <scientific_name>Hominidae</scientific_name>\r
169                                                                     <common_name>Great apes</common_name>\r
170                                                                     <rank>family</rank>\r
171                                                                   </taxonomy>\r
172                                                                   <clade>\r
173                                                                     <taxonomy>\r
174                                                                       <id provider="uniprot">207598</id>\r
175                                                                       <scientific_name>Homininae</scientific_name>\r
176                                                                       <rank>subfamily</rank>\r
177                                                                     </taxonomy>\r
178                                                                     <clade>\r
179                                                                       <taxonomy>\r
180                                                                         <scientific_name>Hominini</scientific_name>\r
181                                                                         <rank>tribe</rank>\r
182                                                                       </taxonomy>\r
183                                                                       <clade>\r
184                                                                         <taxonomy>\r
185                                                                           <id provider="uniprot">9606</id>\r
186                                                                           <code>HUMAN</code>\r
187                                                                           <scientific_name>Homo sapiens</scientific_name>\r
188                                                                           <common_name>Human</common_name>\r
189                                                                           <rank>species</rank>\r
190                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
191                                                                         </taxonomy>\r
192                                                                       </clade>\r
193                                                                       <clade>\r
194                                                                         <taxonomy>\r
195                                                                           <id provider="uniprot">9598</id>\r
196                                                                           <code>PANTR</code>\r
197                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
198                                                                           <common_name>Chimpanzee</common_name>\r
199                                                                           <rank>species</rank>\r
200                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
201                                                                         </taxonomy>\r
202                                                                       </clade>\r
203                                                                     </clade>\r
204                                                                     <clade>\r
205                                                                       <taxonomy>\r
206                                                                         <id provider="uniprot">9595</id>\r
207                                                                         <code>GORGO</code>\r
208                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
209                                                                         <common_name>Western lowland gorilla</common_name>\r
210                                                                         <rank>subspecies</rank>\r
211                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
212                                                                       </taxonomy>\r
213                                                                     </clade>\r
214                                                                   </clade>\r
215                                                                   <clade>\r
216                                                                     <taxonomy>\r
217                                                                       <id provider="uniprot">9601</id>\r
218                                                                       <code>PONAB</code>\r
219                                                                       <scientific_name>Pongo abelii</scientific_name>\r
220                                                                       <common_name>Sumatran orangutan</common_name>\r
221                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
222                                                                       <rank>species</rank>\r
223                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>\r
224                                                                     </taxonomy>\r
225                                                                   </clade>\r
226                                                                 </clade>\r
227                                                                 <clade>\r
228                                                                   <taxonomy>\r
229                                                                     <id provider="uniprot">61853</id>\r
230                                                                     <code>NOMLE</code>\r
231                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
232                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
233                                                                     <synonym>Hylobates leucogenys</synonym>\r
234                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
235                                                                     <rank>species</rank>\r
236                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
237                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
238                                                                   </taxonomy>\r
239                                                                 </clade>\r
240                                                               </clade>\r
241                                                               <clade>\r
242                                                                 <taxonomy>\r
243                                                                   <id provider="uniprot">9528</id>\r
244                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
245                                                                   <rank>subfamily</rank>\r
246                                                                 </taxonomy>\r
247                                                                 <clade>\r
248                                                                   <taxonomy>\r
249                                                                     <id provider="uniprot">9544</id>\r
250                                                                     <code>MACMU</code>\r
251                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
252                                                                     <common_name>Rhesus macaque</common_name>\r
253                                                                     <rank>species</rank>\r
254                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>\r
255                                                                   </taxonomy>\r
256                                                                 </clade>\r
257                                                                 <clade>\r
258                                                                   <taxonomy>\r
259                                                                     <id provider="uniprot">9557</id>\r
260                                                                     <code>PAPHA</code>\r
261                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
262                                                                     <common_name>Hamadryas baboon</common_name>\r
263                                                                     <rank>species</rank>\r
264                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
265                                                                   </taxonomy>\r
266                                                                 </clade>\r
267                                                               </clade>\r
268                                                             </clade>\r
269                                                             <clade>\r
270                                                               <taxonomy>\r
271                                                                 <id provider="uniprot">9483</id>\r
272                                                                 <code>CALJA</code>\r
273                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
274                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
275                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
276                                                                 <rank>species</rank>\r
277                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
278                                                               </taxonomy>\r
279                                                             </clade>\r
280                                                           </clade>\r
281                                                           <clade>\r
282                                                             <taxonomy>\r
283                                                               <id provider="uniprot">9478</id>\r
284                                                               <code>TARSY</code>\r
285                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
286                                                               <common_name>Philippine tarsier</common_name>\r
287                                                               <rank>species</rank>\r
288                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
289                                                             </taxonomy>\r
290                                                           </clade>\r
291                                                         </clade>\r
292                                                         <clade>\r
293                                                           <taxonomy>\r
294                                                             <id provider="uniprot">376911</id>\r
295                                                             <scientific_name>Strepsirrhini</scientific_name>\r
296                                                             <rank>suborder</rank>\r
297                                                           </taxonomy>\r
298                                                           <clade>\r
299                                                             <taxonomy>\r
300                                                               <id provider="uniprot">30608</id>\r
301                                                               <code>MICMU</code>\r
302                                                               <scientific_name>Microcebus murinus</scientific_name>\r
303                                                               <common_name>Lesser mouse lemur</common_name>\r
304                                                               <synonym>Gray Mouse Lemur</synonym>\r
305                                                               <rank>species</rank>\r
306                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
307                                                             </taxonomy>\r
308                                                           </clade>\r
309                                                           <clade>\r
310                                                             <taxonomy>\r
311                                                               <id provider="uniprot">30611</id>\r
312                                                               <code>OTOGA</code>\r
313                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
314                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
315                                                               <synonym>Galago garnetti</synonym>\r
316                                                               <synonym>Small-eared galago</synonym>\r
317                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
318                                                               <rank>species</rank>\r
319                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
320                                                             </taxonomy>\r
321                                                           </clade>\r
322                                                         </clade>\r
323                                                       </clade>\r
324                                                       <clade>\r
325                                                         <taxonomy>\r
326                                                           <id provider="uniprot">37347</id>\r
327                                                           <code>TUPBE</code>\r
328                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
329                                                           <common_name>Common tree shrew</common_name>\r
330                                                           <synonym>Tupaia glis belangeri</synonym>\r
331                                                           <rank>species</rank>\r
332                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
333                                                         </taxonomy>\r
334                                                       </clade>\r
335                                                     </clade>\r
336                                                     <clade>\r
337                                                       <taxonomy>\r
338                                                         <id provider="uniprot">314147</id>\r
339                                                         <scientific_name>Glires</scientific_name>\r
340                                                         <common_name>Rodents and rabbits</common_name>\r
341                                                       </taxonomy>\r
342                                                       <clade>\r
343                                                         <taxonomy>\r
344                                                           <id provider="uniprot">9989</id>\r
345                                                           <scientific_name>Rodentia</scientific_name>\r
346                                                           <rank>order</rank>\r
347                                                         </taxonomy>\r
348                                                         <clade>\r
349                                                           <name>Hystricomorpha &amp; Sciurognathi</name>\r
350                                                           <reference doi="10.1186/1471-2148-9-71">\r
351                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
352                                                           </reference>\r
353                                                           <clade>\r
354                                                             <taxonomy>\r
355                                                               <id provider="uniprot">33553</id>\r
356                                                               <scientific_name>Sciurognathi</scientific_name>\r
357                                                               <rank>suborder</rank>\r
358                                                             </taxonomy>\r
359                                                             <clade>\r
360                                                               <taxonomy>\r
361                                                                 <id provider="uniprot">337687</id>\r
362                                                                 <scientific_name>Muroidea</scientific_name>\r
363                                                               </taxonomy>\r
364                                                               <clade>\r
365                                                                 <taxonomy>\r
366                                                                   <id provider="uniprot">39107</id>\r
367                                                                   <scientific_name>Murinae</scientific_name>\r
368                                                                   <rank>subfamily</rank>\r
369                                                                 </taxonomy>\r
370                                                                 <clade>\r
371                                                                   <taxonomy>\r
372                                                                     <id provider="uniprot">10090</id>\r
373                                                                     <code>MOUSE</code>\r
374                                                                     <scientific_name>Mus musculus</scientific_name>\r
375                                                                     <common_name>Mouse</common_name>\r
376                                                                     <rank>species</rank>\r
377                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>\r
378                                                                   </taxonomy>\r
379                                                                 </clade>\r
380                                                                 <clade>\r
381                                                                   <taxonomy>\r
382                                                                     <id provider="uniprot">10116</id>\r
383                                                                     <code>RAT</code>\r
384                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
385                                                                     <common_name>Rat</common_name>\r
386                                                                     <rank>species</rank>\r
387                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
388                                                                   </taxonomy>\r
389                                                                 </clade>\r
390                                                               </clade>\r
391                                                               <clade>\r
392                                                                 <taxonomy>\r
393                                                                   <id provider="uniprot">10036</id>\r
394                                                                   <code>MESAU</code>\r
395                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
396                                                                   <common_name>Golden hamster</common_name>\r
397                                                                   <rank>species</rank>\r
398                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG</uri>\r
399                                                                 </taxonomy>\r
400                                                               </clade>\r
401                                                             </clade>\r
402                                                             <clade>\r
403                                                               <taxonomy>\r
404                                                                 <id provider="uniprot">10020</id>\r
405                                                                 <code>DIPOR</code>\r
406                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
407                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
408                                                                 <rank>species</rank>\r
409                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
410                                                               </taxonomy>\r
411                                                             </clade>\r
412                                                           </clade>\r
413                                                           <clade>\r
414                                                             <taxonomy>\r
415                                                               <id provider="uniprot">33550</id>\r
416                                                               <scientific_name>Hystricognathi</scientific_name>\r
417                                                               <rank>suborder</rank>\r
418                                                             </taxonomy>\r
419                                                             <clade>\r
420                                                               <taxonomy>\r
421                                                                 <id provider="uniprot">10141</id>\r
422                                                                 <code>CAVPO</code>\r
423                                                                 <scientific_name>Cavia porcellus</scientific_name>\r
424                                                                 <common_name>Guinea pig</common_name>\r
425                                                                 <rank>species</rank>\r
426                                                                 <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>\r
427                                                               </taxonomy>\r
428                                                             </clade>\r
429                                                             <clade>\r
430                                                               <taxonomy>\r
431                                                                 <id provider="uniprot">10181</id>\r
432                                                                 <code>HETGA</code>\r
433                                                                 <scientific_name>Heterocephalus glaber</scientific_name>\r
434                                                                 <common_name>Naked mole rat</common_name>\r
435                                                                 <rank>species</rank>\r
436                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg</uri>\r
437                                                               </taxonomy>\r
438                                                             </clade>\r
439                                                           </clade>\r
440                                                         </clade>\r
441                                                         <clade>\r
442                                                           <taxonomy>\r
443                                                             <id provider="uniprot">43179</id>\r
444                                                             <code>SPETR</code>\r
445                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
446                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
447                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
448                                                             <rank>species</rank>\r
449                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
450                                                           </taxonomy>\r
451                                                         </clade>\r
452                                                       </clade>\r
453                                                       <clade>\r
454                                                         <taxonomy>\r
455                                                           <id provider="uniprot">9975</id>\r
456                                                           <scientific_name>Lagomorpha</scientific_name>\r
457                                                           <rank>order</rank>\r
458                                                         </taxonomy>\r
459                                                         <clade>\r
460                                                           <taxonomy>\r
461                                                             <id provider="uniprot">9978</id>\r
462                                                             <code>OCHPR</code>\r
463                                                             <scientific_name>Ochotona princeps</scientific_name>\r
464                                                             <common_name>Southern American pika</common_name>\r
465                                                             <rank>species</rank>\r
466                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
467                                                           </taxonomy>\r
468                                                         </clade>\r
469                                                         <clade>\r
470                                                           <taxonomy>\r
471                                                             <id provider="uniprot">9986</id>\r
472                                                             <code>RABIT</code>\r
473                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
474                                                             <common_name>Rabbit</common_name>\r
475                                                             <rank>species</rank>\r
476                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>\r
477                                                           </taxonomy>\r
478                                                         </clade>\r
479                                                       </clade>\r
480                                                     </clade>\r
481                                                   </clade>\r
482                                                   <clade>\r
483                                                     <taxonomy>\r
484                                                       <id provider="uniprot">314145</id>\r
485                                                       <scientific_name>Laurasiatheria</scientific_name>\r
486                                                       <rank>superorder</rank>\r
487                                                     </taxonomy>\r
488                                                     <clade>\r
489                                                       <taxonomy>\r
490                                                         <scientific_name>Scrotifera</scientific_name>\r
491                                                       </taxonomy>\r
492                                                       <clade>\r
493                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
494                                                         <clade>\r
495                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
496                                                           <clade>\r
497                                                             <taxonomy>\r
498                                                               <id provider="uniprot">91561</id>\r
499                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
500                                                               <common_name>Even-toed ungulates</common_name>\r
501                                                             </taxonomy>\r
502                                                             <clade>\r
503                                                               <name>Cetruminantia &amp; Suina</name>\r
504                                                               <clade>\r
505                                                                 <taxonomy>\r
506                                                                   <scientific_name>Cetruminantia</scientific_name>\r
507                                                                 </taxonomy>\r
508                                                                 <clade>\r
509                                                                   <taxonomy>\r
510                                                                     <id provider="uniprot">9895</id>\r
511                                                                     <scientific_name>Bovidae</scientific_name>\r
512                                                                     <rank>family</rank>\r
513                                                                   </taxonomy>\r
514                                                                   <clade>\r
515                                                                     <taxonomy>\r
516                                                                       <id provider="uniprot">9913</id>\r
517                                                                       <code>BOVIN</code>\r
518                                                                       <scientific_name>Bos taurus</scientific_name>\r
519                                                                       <common_name>Bovine</common_name>\r
520                                                                       <synonym>Bos bovis</synonym>\r
521                                                                       <rank>species</rank>\r
522                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>\r
523                                                                     </taxonomy>\r
524                                                                   </clade>\r
525                                                                   <clade>\r
526                                                                     <taxonomy>\r
527                                                                       <id provider="uniprot">9940</id>\r
528                                                                       <code>SHEEP</code>\r
529                                                                       <scientific_name>Ovis aries</scientific_name>\r
530                                                                       <common_name>Sheep</common_name>\r
531                                                                       <rank>species</rank>\r
532                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
533                                                                     </taxonomy>\r
534                                                                   </clade>\r
535                                                                 </clade>\r
536                                                                 <clade>\r
537                                                                   <taxonomy>\r
538                                                                     <id provider="uniprot">9721</id>\r
539                                                                     <scientific_name>Cetacea</scientific_name>\r
540                                                                     <common_name>Whales</common_name>\r
541                                                                     <rank>order</rank>\r
542                                                                   </taxonomy>\r
543                                                                   <clade>\r
544                                                                     <taxonomy>\r
545                                                                       <id provider="uniprot">9771</id>\r
546                                                                       <code>BALMU</code>\r
547                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
548                                                                       <common_name>Blue whale</common_name>\r
549                                                                       <rank>species</rank>\r
550                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
551                                                                     </taxonomy>\r
552                                                                   </clade>\r
553                                                                   <clade>\r
554                                                                     <taxonomy>\r
555                                                                       <id provider="uniprot">9739</id>\r
556                                                                       <code>TURTR</code>\r
557                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
558                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
559                                                                       <synonym>Delphinus truncatus</synonym>\r
560                                                                       <rank>species</rank>\r
561                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
562                                                                     </taxonomy>\r
563                                                                   </clade>\r
564                                                                 </clade>\r
565                                                               </clade>\r
566                                                               <clade>\r
567                                                                 <taxonomy>\r
568                                                                   <id provider="uniprot">9823</id>\r
569                                                                   <code>PIG</code>\r
570                                                                   <scientific_name>Sus scrofa</scientific_name>\r
571                                                                   <common_name>Pig</common_name>\r
572                                                                   <rank>species</rank>\r
573                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
574                                                                 </taxonomy>\r
575                                                               </clade>\r
576                                                             </clade>\r
577                                                             <clade>\r
578                                                               <taxonomy>\r
579                                                                 <id provider="uniprot">30538</id>\r
580                                                                 <code>LAMPA</code>\r
581                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
582                                                                 <common_name>Alpaca</common_name>\r
583                                                                 <synonym>Lama pacos</synonym>\r
584                                                                 <rank>species</rank>\r
585                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>\r
586                                                               </taxonomy>\r
587                                                             </clade>\r
588                                                           </clade>\r
589                                                           <clade>\r
590                                                             <taxonomy>\r
591                                                               <id provider="uniprot">9796</id>\r
592                                                               <code>HORSE</code>\r
593                                                               <scientific_name>Equus caballus</scientific_name>\r
594                                                               <common_name>Horse</common_name>\r
595                                                               <rank>species</rank>\r
596                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
597                                                             </taxonomy>\r
598                                                           </clade>\r
599                                                         </clade>\r
600                                                         <clade>\r
601                                                           <taxonomy>\r
602                                                             <id provider="uniprot">9397</id>\r
603                                                             <scientific_name>Chiroptera</scientific_name>\r
604                                                             <common_name>Bats</common_name>\r
605                                                             <rank>order</rank>\r
606                                                           </taxonomy>\r
607                                                           <clade>\r
608                                                             <taxonomy>\r
609                                                               <id provider="uniprot">59463</id>\r
610                                                               <code>MYOLU</code>\r
611                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
612                                                               <common_name>Little brown bat</common_name>\r
613                                                               <rank>species</rank>\r
614                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
615                                                             </taxonomy>\r
616                                                           </clade>\r
617                                                           <clade>\r
618                                                             <taxonomy>\r
619                                                               <id provider="uniprot">132908</id>\r
620                                                               <code>PTEVA</code>\r
621                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
622                                                               <common_name>Large flying fox</common_name>\r
623                                                               <rank>species</rank>\r
624                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
625                                                             </taxonomy>\r
626                                                           </clade>\r
627                                                         </clade>\r
628                                                       </clade>\r
629                                                       <clade>\r
630                                                         <name>Carnivora</name>\r
631                                                         <taxonomy>\r
632                                                           <id provider="uniprot">33554</id>\r
633                                                           <scientific_name>Carnivora</scientific_name>\r
634                                                           <rank>order</rank>\r
635                                                         </taxonomy>\r
636                                                         <clade>\r
637                                                           <taxonomy>\r
638                                                             <id provider="uniprot">379584</id>\r
639                                                             <scientific_name>Caniformia</scientific_name>\r
640                                                             <rank>suborder</rank>\r
641                                                           </taxonomy>\r
642                                                           <clade>\r
643                                                             <taxonomy>\r
644                                                               <id provider="uniprot">9646</id>\r
645                                                               <code>AILME</code>\r
646                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
647                                                               <common_name>Giant panda</common_name>\r
648                                                               <rank>species</rank>\r
649                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
650                                                             </taxonomy>\r
651                                                           </clade>\r
652                                                           <clade>\r
653                                                             <taxonomy>\r
654                                                               <id provider="uniprot">9615</id>\r
655                                                               <code>CANFA</code>\r
656                                                               <scientific_name>Canis familiaris</scientific_name>\r
657                                                               <common_name>Dog</common_name>\r
658                                                               <synonym>Canis lupus familiaris</synonym>\r
659                                                               <rank>subspecies</rank>\r
660                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
661                                                             </taxonomy>\r
662                                                           </clade>\r
663                                                         </clade>\r
664                                                         <clade>\r
665                                                           <taxonomy>\r
666                                                             <id provider="uniprot">9685</id>\r
667                                                             <code>FELCA</code>\r
668                                                             <scientific_name>Felis catus</scientific_name>\r
669                                                             <common_name>Cat</common_name>\r
670                                                             <synonym>Felis silvestris catus</synonym>\r
671                                                             <rank>species</rank>\r
672                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
673                                                           </taxonomy>\r
674                                                         </clade>\r
675                                                       </clade>\r
676                                                     </clade>\r
677                                                     <clade>\r
678                                                       <taxonomy>\r
679                                                         <id provider="uniprot">9362</id>\r
680                                                         <scientific_name>Insectivora</scientific_name>\r
681                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
682                                                         <rank>order</rank>\r
683                                                       </taxonomy>\r
684                                                       <clade>\r
685                                                         <taxonomy>\r
686                                                           <id provider="uniprot">9365</id>\r
687                                                           <code>ERIEU</code>\r
688                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
689                                                           <common_name>Western European hedgehog</common_name>\r
690                                                           <rank>species</rank>\r
691                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
692                                                         </taxonomy>\r
693                                                       </clade>\r
694                                                       <clade>\r
695                                                         <taxonomy>\r
696                                                           <id provider="uniprot">42254</id>\r
697                                                           <code>SORAR</code>\r
698                                                           <scientific_name>Sorex araneus</scientific_name>\r
699                                                           <common_name>Eurasian common shrew</common_name>\r
700                                                           <synonym>European shrew</synonym>\r
701                                                           <rank>species</rank>\r
702                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
703                                                         </taxonomy>\r
704                                                       </clade>\r
705                                                     </clade>\r
706                                                   </clade>\r
707                                                 </clade>\r
708                                                 <clade>\r
709                                                   <taxonomy>\r
710                                                     <scientific_name>Atlantogenata</scientific_name>\r
711                                                   </taxonomy>\r
712                                                   <clade>\r
713                                                     <taxonomy>\r
714                                                       <id provider="uniprot">311790</id>\r
715                                                       <scientific_name>Afrotheria</scientific_name>\r
716                                                       <rank>superorder</rank>\r
717                                                     </taxonomy>\r
718                                                     <clade>\r
719                                                       <taxonomy>\r
720                                                         <scientific_name>Paenungulata</scientific_name>\r
721                                                       </taxonomy>\r
722                                                       <clade>\r
723                                                         <taxonomy>\r
724                                                           <id provider="uniprot">9785</id>\r
725                                                           <code>LOXAF</code>\r
726                                                           <scientific_name>Loxodonta africana</scientific_name>\r
727                                                           <common_name>African savanna elephant</common_name>\r
728                                                           <rank>species</rank>\r
729                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
730                                                         </taxonomy>\r
731                                                       </clade>\r
732                                                       <clade>\r
733                                                         <taxonomy>\r
734                                                           <id provider="uniprot">9813</id>\r
735                                                           <code>PROCA</code>\r
736                                                           <scientific_name>Procavia capensis</scientific_name>\r
737                                                           <common_name>Cape hyrax</common_name>\r
738                                                           <synonym>Rock dassie</synonym>\r
739                                                           <rank>species</rank>\r
740                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
741                                                         </taxonomy>\r
742                                                       </clade>\r
743                                                     </clade>\r
744                                                     <clade>\r
745                                                       <taxonomy>\r
746                                                         <id provider="uniprot">9371</id>\r
747                                                         <code>ECHTE</code>\r
748                                                         <scientific_name>Echinops telfairi</scientific_name>\r
749                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
750                                                         <rank>species</rank>\r
751                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
752                                                       </taxonomy>\r
753                                                     </clade>\r
754                                                   </clade>\r
755                                                   <clade>\r
756                                                     <taxonomy>\r
757                                                       <id provider="uniprot">9348</id>\r
758                                                       <scientific_name>Xenarthra</scientific_name>\r
759                                                       <synonym>Edentata</synonym>\r
760                                                       <rank>superorder</rank>\r
761                                                     </taxonomy>\r
762                                                     <clade>\r
763                                                       <taxonomy>\r
764                                                         <id provider="uniprot">9358</id>\r
765                                                         <code>CHOHO</code>\r
766                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
767                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
768                                                         <rank>species</rank>\r
769                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
770                                                       </taxonomy>\r
771                                                     </clade>\r
772                                                     <clade>\r
773                                                       <taxonomy>\r
774                                                         <id provider="uniprot">9361</id>\r
775                                                         <code>DASNO</code>\r
776                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
777                                                         <common_name>Nine-banded armadillo</common_name>\r
778                                                         <rank>species</rank>\r
779                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
780                                                       </taxonomy>\r
781                                                     </clade>\r
782                                                   </clade>\r
783                                                 </clade>\r
784                                               </clade>\r
785                                               <clade>\r
786                                                 <taxonomy>\r
787                                                   <id provider="uniprot">9263</id>\r
788                                                   <scientific_name>Metatheria</scientific_name>\r
789                                                   <common_name>Marsupials</common_name>\r
790                                                 </taxonomy>\r
791                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
792                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
793                                                 </reference>\r
794                                                 <reference>\r
795                                                 </reference>\r
796                                                 <clade>\r
797                                                   <taxonomy>\r
798                                                     <scientific_name>Eometatheria</scientific_name>\r
799                                                   </taxonomy>\r
800                                                   <clade>\r
801                                                     <taxonomy>\r
802                                                       <id provider="uniprot">9315</id>\r
803                                                       <code>MACEU</code>\r
804                                                       <scientific_name>Macropus eugenii</scientific_name>\r
805                                                       <common_name>Tammar wallaby</common_name>\r
806                                                       <rank>species</rank>\r
807                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
808                                                     </taxonomy>\r
809                                                   </clade>\r
810                                                   <clade>\r
811                                                     <taxonomy>\r
812                                                       <id provider="uniprot">9305</id>\r
813                                                       <code>SARHA</code>\r
814                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
815                                                       <common_name>Tasmanian devil</common_name>\r
816                                                       <synonym>Sarcophilus laniarius</synonym>\r
817                                                       <rank>species</rank>\r
818                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
819                                                     </taxonomy>\r
820                                                   </clade>\r
821                                                 </clade>\r
822                                                 <clade>\r
823                                                   <taxonomy>\r
824                                                     <id provider="uniprot">13616</id>\r
825                                                     <code>MONDO</code>\r
826                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
827                                                     <common_name>Short-tailed gray opossum</common_name>\r
828                                                     <rank>species</rank>\r
829                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
830                                                   </taxonomy>\r
831                                                 </clade>\r
832                                               </clade>\r
833                                             </clade>\r
834                                             <clade>\r
835                                               <taxonomy>\r
836                                                 <id provider="uniprot">9258</id>\r
837                                                 <code>ORNAN</code>\r
838                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
839                                                 <common_name>Duckbill platypus</common_name>\r
840                                                 <rank>species</rank>\r
841                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>\r
842                                               </taxonomy>\r
843                                             </clade>\r
844                                           </clade>\r
845                                           <clade>\r
846                                             <taxonomy>\r
847                                               <id provider="uniprot">8457</id>\r
848                                               <scientific_name>Sauropsida</scientific_name>\r
849                                             </taxonomy>\r
850                                             <clade>\r
851                                               <taxonomy>\r
852                                                 <id provider="uniprot">1329799</id>\r
853                                                 <scientific_name>Testudines + Archosauria group</scientific_name>\r
854                                               </taxonomy>\r
855                                               <reference doi="10.1038/ng.2615">\r
856                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
857                                               </reference>\r
858                                               <reference>\r
859                                               </reference>\r
860                                               <reference>\r
861                                               </reference>\r
862                                               <clade>\r
863                                                 <taxonomy>\r
864                                                   <id provider="uniprot">8492</id>\r
865                                                   <scientific_name>Archosauria</scientific_name>\r
866                                                 </taxonomy>\r
867                                                 <clade>\r
868                                                   <taxonomy>\r
869                                                     <id provider="uniprot">8825</id>\r
870                                                     <scientific_name>Neognathae</scientific_name>\r
871                                                     <rank>superorder</rank>\r
872                                                   </taxonomy>\r
873                                                   <clade>\r
874                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
875                                                     <clade>\r
876                                                       <taxonomy>\r
877                                                         <id provider="uniprot">9005</id>\r
878                                                         <scientific_name>Phasianidae</scientific_name>\r
879                                                         <rank>family</rank>\r
880                                                       </taxonomy>\r
881                                                       <clade>\r
882                                                         <taxonomy>\r
883                                                           <id provider="uniprot">9031</id>\r
884                                                           <code>CHICK</code>\r
885                                                           <scientific_name>Gallus gallus</scientific_name>\r
886                                                           <common_name>Chicken</common_name>\r
887                                                           <synonym>Gallus domesticus</synonym>\r
888                                                           <rank>species</rank>\r
889                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
890                                                         </taxonomy>\r
891                                                       </clade>\r
892                                                       <clade>\r
893                                                         <taxonomy>\r
894                                                           <id provider="uniprot">9103</id>\r
895                                                           <code>MELGA</code>\r
896                                                           <scientific_name>Meleagris gallopavo</scientific_name>\r
897                                                           <common_name>Common turkey</common_name>\r
898                                                           <rank>species</rank>\r
899                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
900                                                         </taxonomy>\r
901                                                       </clade>\r
902                                                     </clade>\r
903                                                     <clade>\r
904                                                       <taxonomy>\r
905                                                         <id provider="uniprot">8839</id>\r
906                                                         <code>ANAPL</code>\r
907                                                         <scientific_name>Anas platyrhynchos</scientific_name>\r
908                                                         <common_name>Domestic duck</common_name>\r
909                                                         <synonym>Anas boschas</synonym>\r
910                                                         <rank>species</rank>\r
911                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
912                                                       </taxonomy>\r
913                                                     </clade>\r
914                                                   </clade>\r
915                                                   <clade>\r
916                                                     <taxonomy>\r
917                                                       <id provider="uniprot">9126</id>\r
918                                                       <scientific_name>Passeriformes</scientific_name>\r
919                                                       <rank>order</rank>\r
920                                                     </taxonomy>\r
921                                                     <clade>\r
922                                                       <taxonomy>\r
923                                                         <id provider="uniprot">59729</id>\r
924                                                         <code>TAEGU</code>\r
925                                                         <scientific_name>Taeniopygia guttata</scientific_name>\r
926                                                         <common_name>Zebra finch</common_name>\r
927                                                         <synonym>Poephila guttata</synonym>\r
928                                                         <rank>species</rank>\r
929                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
930                                                       </taxonomy>\r
931                                                     </clade>\r
932                                                     <clade>\r
933                                                       <taxonomy>\r
934                                                         <id provider="uniprot">59894</id>\r
935                                                         <code>FICAL</code>\r
936                                                         <scientific_name>Ficedula albicollis</scientific_name>\r
937                                                         <common_name>Collared flycatcher</common_name>\r
938                                                         <synonym>Muscicapa albicollis</synonym>\r
939                                                         <rank>species</rank>\r
940                                                         <uri>http://www.biolib.cz/IMG/GAL/156619.jpg</uri>\r
941                                                       </taxonomy>\r
942                                                     </clade>\r
943                                                   </clade>\r
944                                                 </clade>\r
945                                                 <clade>\r
946                                                   <taxonomy>\r
947                                                     <id provider="uniprot">8496</id>\r
948                                                     <code>ALLMI</code>\r
949                                                     <scientific_name>Alligator mississippiensis</scientific_name>\r
950                                                     <common_name>American alligator</common_name>\r
951                                                     <rank>species</rank>\r
952                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>\r
953                                                   </taxonomy>\r
954                                                 </clade>\r
955                                               </clade>\r
956                                               <clade>\r
957                                                 <taxonomy>\r
958                                                   <id provider="uniprot">13735</id>\r
959                                                   <code>PELSI</code>\r
960                                                   <scientific_name>Pelodiscus sinensis</scientific_name>\r
961                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>\r
962                                                   <common_name>Chinese softshell turtle</common_name>\r
963                                                   <synonym>Trionyx sinensis</synonym>\r
964                                                   <rank>species</rank>\r
965                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>\r
966                                                 </taxonomy>\r
967                                               </clade>\r
968                                             </clade>\r
969                                             <clade>\r
970                                               <taxonomy>\r
971                                                 <id provider="uniprot">1329911</id>\r
972                                                 <scientific_name>Toxicofera</scientific_name>\r
973                                               </taxonomy>\r
974                                               <clade>\r
975                                                 <taxonomy>\r
976                                                   <id provider="uniprot">8570</id>\r
977                                                   <scientific_name>Serpentes</scientific_name>\r
978                                                   <common_name>snakes</common_name>\r
979                                                   <rank>infraorder</rank>\r
980                                                 </taxonomy>\r
981                                                 <clade>\r
982                                                   <taxonomy>\r
983                                                     <id provider="uniprot">8665</id>\r
984                                                     <code>OPHHA</code>\r
985                                                     <scientific_name>Ophiophagus hannah</scientific_name>\r
986                                                     <common_name>King cobra</common_name>\r
987                                                     <synonym>Naja hannah</synonym>\r
988                                                     <rank>species</rank>\r
989                                                     <uri>http://www.thehindu.com/multimedia/dynamic/01674/KING_COBRA_1674012e.jpg</uri>\r
990                                                   </taxonomy>\r
991                                                 </clade>\r
992                                                 <clade>\r
993                                                   <taxonomy>\r
994                                                     <id provider="uniprot">176946</id>\r
995                                                     <code>PYTBI</code>\r
996                                                     <scientific_name>Python bivittatus</scientific_name>\r
997                                                     <common_name>Burmese python</common_name>\r
998                                                     <synonym>Python molurus bivittatus</synonym>\r
999                                                     <rank>species</rank>\r
1000                                                     <uri>http://www.nps.gov/ever/parknews/images/KLwoodrat_python_5626.jpg</uri>\r
1001                                                   </taxonomy>\r
1002                                                 </clade>\r
1003                                               </clade>\r
1004                                               <clade>\r
1005                                                 <taxonomy>\r
1006                                                   <id provider="uniprot">28377</id>\r
1007                                                   <code>ANOCA</code>\r
1008                                                   <scientific_name>Anolis carolinensis</scientific_name>\r
1009                                                   <authority>Voigt, 1832</authority>\r
1010                                                   <common_name>Green anole</common_name>\r
1011                                                   <synonym>American chameleon</synonym>\r
1012                                                   <rank>species</rank>\r
1013                                                   <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
1014                                                   <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
1015                                                 </taxonomy>\r
1016                                               </clade>\r
1017                                             </clade>\r
1018                                           </clade>\r
1019                                         </clade>\r
1020                                         <clade>\r
1021                                           <taxonomy>\r
1022                                             <id provider="uniprot">8292</id>\r
1023                                             <scientific_name>Amphibia</scientific_name>\r
1024                                             <rank>class</rank>\r
1025                                           </taxonomy>\r
1026                                           <clade>\r
1027                                             <taxonomy>\r
1028                                               <id provider="uniprot">41666</id>\r
1029                                               <scientific_name>Batrachia</scientific_name>\r
1030                                               <rank>superorder</rank>\r
1031                                             </taxonomy>\r
1032                                             <clade>\r
1033                                               <taxonomy>\r
1034                                                 <id provider="uniprot">8342</id>\r
1035                                                 <scientific_name>Anura</scientific_name>\r
1036                                                 <rank>order</rank>\r
1037                                               </taxonomy>\r
1038                                               <clade>\r
1039                                                 <taxonomy>\r
1040                                                   <id provider="uniprot">8353</id>\r
1041                                                   <scientific_name>Xenopus</scientific_name>\r
1042                                                   <rank>genus</rank>\r
1043                                                 </taxonomy>\r
1044                                                 <clade>\r
1045                                                   <taxonomy>\r
1046                                                     <id provider="uniprot">8355</id>\r
1047                                                     <code>XENLA</code>\r
1048                                                     <scientific_name>Xenopus laevis</scientific_name>\r
1049                                                     <authority>Daudin, 1802</authority>\r
1050                                                     <common_name>African clawed frog</common_name>\r
1051                                                     <synonym>Bufo laevis</synonym>\r
1052                                                     <rank>species</rank>\r
1053                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
1054                                                   </taxonomy>\r
1055                                                 </clade>\r
1056                                                 <clade>\r
1057                                                   <taxonomy>\r
1058                                                     <id provider="uniprot">8364</id>\r
1059                                                     <code>XENTR</code>\r
1060                                                     <scientific_name>Xenopus tropicalis</scientific_name>\r
1061                                                     <common_name>Western clawed frog</common_name>\r
1062                                                     <synonym>Silurana tropicalis</synonym>\r
1063                                                     <rank>species</rank>\r
1064                                                     <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
1065                                                   </taxonomy>\r
1066                                                 </clade>\r
1067                                               </clade>\r
1068                                               <clade>\r
1069                                                 <taxonomy>\r
1070                                                   <id provider="uniprot">8384</id>\r
1071                                                   <code>BUFBU</code>\r
1072                                                   <scientific_name>Bufo bufo</scientific_name>\r
1073                                                   <common_name>European toad</common_name>\r
1074                                                   <rank>species</rank>\r
1075                                                   <uri>http://www.naturephoto-cz.com/photos/others/common-toad-22611.jpg</uri>\r
1076                                                 </taxonomy>\r
1077                                               </clade>\r
1078                                             </clade>\r
1079                                             <clade>\r
1080                                               <taxonomy>\r
1081                                                 <id provider="uniprot">8293</id>\r
1082                                                 <scientific_name>Caudata</scientific_name>\r
1083                                                 <rank>order</rank>\r
1084                                               </taxonomy>\r
1085                                               <clade>\r
1086                                                 <taxonomy>\r
1087                                                   <id provider="uniprot">1331674</id>\r
1088                                                   <scientific_name>Pleurodelinae</scientific_name>\r
1089                                                   <rank>subfamily</rank>\r
1090                                                 </taxonomy>\r
1091                                                 <clade>\r
1092                                                   <taxonomy>\r
1093                                                     <id provider="uniprot">54263</id>\r
1094                                                     <code>MESAL</code>\r
1095                                                     <scientific_name>Mesotriton alpestris</scientific_name>\r
1096                                                     <common_name>Alpine newt</common_name>\r
1097                                                     <synonym>Ichthyosaura alpestris</synonym>\r
1098                                                     <synonym>Mesotriton alpestris</synonym>\r
1099                                                     <rank>species</rank>\r
1100                                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0403/0436.jpeg</uri>\r
1101                                                   </taxonomy>\r
1102                                                 </clade>\r
1103                                                 <clade>\r
1104                                                   <taxonomy>\r
1105                                                     <id provider="uniprot">8316</id>\r
1106                                                     <code>NOTVI</code>\r
1107                                                     <scientific_name>Notophthalmus viridescens</scientific_name>\r
1108                                                     <common_name>Eastern newt</common_name>\r
1109                                                     <synonym>Triturus viridescens</synonym>\r
1110                                                     <rank>species</rank>\r
1111                                                     <uri>http://www.jeffpippen.com/herps/enewt120908-9654sandybottomz.jpg</uri>\r
1112                                                   </taxonomy>\r
1113                                                 </clade>\r
1114                                               </clade>\r
1115                                               <clade>\r
1116                                                 <taxonomy>\r
1117                                                   <id provider="uniprot">8341</id>\r
1118                                                   <code>SIRIN</code>\r
1119                                                   <scientific_name>Siren intermedia</scientific_name>\r
1120                                                   <common_name>Lesser siren</common_name>\r
1121                                                   <rank>species</rank>\r
1122                                                   <uri>http://us.i1.yimg.com/us.yimg.com/i/ligans/animals/m/ar0181_1m.jpg</uri>\r
1123                                                 </taxonomy>\r
1124                                               </clade>\r
1125                                             </clade>\r
1126                                           </clade>\r
1127                                           <clade>\r
1128                                             <taxonomy>\r
1129                                               <id provider="uniprot">543905</id>\r
1130                                               <code>OSCOC</code>\r
1131                                               <scientific_name>Oscaecilia ochrocephala</scientific_name>\r
1132                                               <common_name>Yellow-headed caecilian</common_name>\r
1133                                               <rank>species</rank>\r
1134                                               <uri>http://media.eol.org/content/2011/06/24/14/82959_580_360.jpg</uri>\r
1135                                             </taxonomy>\r
1136                                           </clade>\r
1137                                         </clade>\r
1138                                       </clade>\r
1139                                       <clade>\r
1140                                         <taxonomy>\r
1141                                           <id provider="uniprot">7897</id>\r
1142                                           <code>LATCH</code>\r
1143                                           <scientific_name>Latimeria chalumnae</scientific_name>\r
1144                                           <common_name>West Indian ocean coelacanth</common_name>\r
1145                                           <rank>species</rank>\r
1146                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>\r
1147                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>\r
1148                                         </taxonomy>\r
1149                                       </clade>\r
1150                                     </clade>\r
1151                                     <clade>\r
1152                                       <taxonomy>\r
1153                                         <id provider="uniprot">7898</id>\r
1154                                         <scientific_name>Actinopterygii</scientific_name>\r
1155                                         <common_name>bony fishes</common_name>\r
1156                                         <rank>class</rank>\r
1157                                       </taxonomy>\r
1158                                       <clade>\r
1159                                         <taxonomy>\r
1160                                           <id provider="uniprot">186623</id>\r
1161                                           <scientific_name>Actinopteri</scientific_name>\r
1162                                         </taxonomy>\r
1163                                         <clade>\r
1164                                           <taxonomy>\r
1165                                             <id provider="uniprot">41665</id>\r
1166                                             <scientific_name>Neopterygii</scientific_name>\r
1167                                           </taxonomy>\r
1168                                           <clade>\r
1169                                             <taxonomy>\r
1170                                               <id provider="uniprot">32443</id>\r
1171                                               <scientific_name>Teleostei</scientific_name>\r
1172                                             </taxonomy>\r
1173                                             <clade>\r
1174                                               <taxonomy>\r
1175                                                 <id provider="uniprot">123368</id>\r
1176                                                 <scientific_name>Acanthomorpha</scientific_name>\r
1177                                               </taxonomy>\r
1178                                               <clade>\r
1179                                                 <taxonomy>\r
1180                                                   <id provider="uniprot">32485</id>\r
1181                                                   <scientific_name>Percomorpha</scientific_name>\r
1182                                                 </taxonomy>\r
1183                                                 <clade>\r
1184                                                   <taxonomy>\r
1185                                                     <id provider="uniprot">129949</id>\r
1186                                                     <scientific_name>Smegmamorpha</scientific_name>\r
1187                                                   </taxonomy>\r
1188                                                   <clade>\r
1189                                                     <taxonomy>\r
1190                                                       <id provider="uniprot">32456</id>\r
1191                                                       <scientific_name>Atherinomorpha</scientific_name>\r
1192                                                     </taxonomy>\r
1193                                                     <clade>\r
1194                                                       <taxonomy>\r
1195                                                         <id provider="uniprot">8090</id>\r
1196                                                         <code>ORYLA</code>\r
1197                                                         <scientific_name>Oryzias latipes</scientific_name>\r
1198                                                         <common_name>Medaka fish</common_name>\r
1199                                                         <synonym>Japanese ricefish</synonym>\r
1200                                                         <rank>species</rank>\r
1201                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
1202                                                       </taxonomy>\r
1203                                                     </clade>\r
1204                                                     <clade>\r
1205                                                       <taxonomy>\r
1206                                                         <id provider="uniprot">8083</id>\r
1207                                                         <code>XIPMA</code>\r
1208                                                         <scientific_name>Xiphophorus maculatus</scientific_name>\r
1209                                                         <authority>Guenther, 1866</authority>\r
1210                                                         <common_name>Southern platyfish</common_name>\r
1211                                                         <synonym>Platypoecilus maculatus</synonym>\r
1212                                                         <rank>species</rank>\r
1213                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>\r
1214                                                       </taxonomy>\r
1215                                                     </clade>\r
1216                                                   </clade>\r
1217                                                   <clade>\r
1218                                                     <taxonomy>\r
1219                                                       <id provider="uniprot">69293</id>\r
1220                                                       <code>GASAC</code>\r
1221                                                       <scientific_name>Gasterosteus aculeatus</scientific_name>\r
1222                                                       <common_name>Three-spined stickleback</common_name>\r
1223                                                       <rank>species</rank>\r
1224                                                       <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>\r
1225                                                     </taxonomy>\r
1226                                                   </clade>\r
1227                                                 </clade>\r
1228                                                 <clade>\r
1229                                                   <taxonomy>\r
1230                                                     <id provider="uniprot">31031</id>\r
1231                                                     <scientific_name>Tetraodontidae</scientific_name>\r
1232                                                     <common_name>puffers</common_name>\r
1233                                                     <rank>family</rank>\r
1234                                                   </taxonomy>\r
1235                                                   <clade>\r
1236                                                     <taxonomy>\r
1237                                                       <id provider="uniprot">31033</id>\r
1238                                                       <code>TAKRU</code>\r
1239                                                       <scientific_name>Takifugu rubripes</scientific_name>\r
1240                                                       <common_name>Japanese pufferfish</common_name>\r
1241                                                       <synonym>Fugu rubripes</synonym>\r
1242                                                       <rank>species</rank>\r
1243                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
1244                                                     </taxonomy>\r
1245                                                   </clade>\r
1246                                                   <clade>\r
1247                                                     <taxonomy>\r
1248                                                       <id provider="uniprot">99883</id>\r
1249                                                       <code>TETNG</code>\r
1250                                                       <scientific_name>Tetraodon nigroviridis</scientific_name>\r
1251                                                       <common_name>Green puffer</common_name>\r
1252                                                       <synonym>Chelonodon nigroviridis</synonym>\r
1253                                                       <rank>species</rank>\r
1254                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
1255                                                     </taxonomy>\r
1256                                                   </clade>\r
1257                                                 </clade>\r
1258                                                 <clade>\r
1259                                                   <taxonomy>\r
1260                                                     <id provider="uniprot">8128</id>\r
1261                                                     <code>ORENI</code>\r
1262                                                     <scientific_name>Tilapia nilotica</scientific_name>\r
1263                                                     <authority>Linnaeus, 1758</authority>\r
1264                                                     <common_name>Nile tilapia</common_name>\r
1265                                                     <synonym>Tilapia nilotica</synonym>\r
1266                                                     <rank>species</rank>\r
1267                                                     <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>\r
1268                                                   </taxonomy>\r
1269                                                 </clade>\r
1270                                               </clade>\r
1271                                               <clade>\r
1272                                                 <taxonomy>\r
1273                                                   <id provider="uniprot">8049</id>\r
1274                                                   <code>GADMO</code>\r
1275                                                   <scientific_name>Gadus morhua</scientific_name>\r
1276                                                   <common_name>Atlantic cod</common_name>\r
1277                                                   <rank>species</rank>\r
1278                                                   <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
1279                                                 </taxonomy>\r
1280                                               </clade>\r
1281                                             </clade>\r
1282                                             <clade>\r
1283                                               <taxonomy>\r
1284                                                 <id provider="uniprot">32519</id>\r
1285                                                 <scientific_name>Ostariophysi</scientific_name>\r
1286                                               </taxonomy>\r
1287                                               <clade>\r
1288                                                 <taxonomy>\r
1289                                                   <id provider="uniprot">7994</id>\r
1290                                                   <code>ASTMX</code>\r
1291                                                   <scientific_name>Astyanax mexicanus</scientific_name>\r
1292                                                   <common_name>Blind cave fish</common_name>\r
1293                                                   <synonym>Astyanax fasciatus mexicanus</synonym>\r
1294                                                   <rank>species</rank>\r
1295                                                   <uri>http://nas.er.usgs.gov/XIMAGESERVERX/2005/20051101115108.jpg</uri>\r
1296                                                   <uri>http://www.seriouslyfish.com/wp-content/uploads/2012/04/Astyanax-mexicanus-blind-HJ-Chen.jpg</uri>\r
1297                                                 </taxonomy>\r
1298                                               </clade>\r
1299                                               <clade>\r
1300                                                 <taxonomy>\r
1301                                                   <id provider="uniprot">7955</id>\r
1302                                                   <code>DANRE</code>\r
1303                                                   <scientific_name>Danio rerio</scientific_name>\r
1304                                                   <common_name>Zebrafish</common_name>\r
1305                                                   <synonym>Brachydanio rerio</synonym>\r
1306                                                   <rank>species</rank>\r
1307                                                   <uri>http://www.cas.vanderbilt.edu/bioimages/animals/danrer/wdanreradult38824.jpg</uri>\r
1308                                                 </taxonomy>\r
1309                                               </clade>\r
1310                                             </clade>\r
1311                                           </clade>\r
1312                                           <clade>\r
1313                                             <taxonomy>\r
1314                                               <id provider="uniprot">7918</id>\r
1315                                               <code>LEPOC</code>\r
1316                                               <scientific_name>Lepisosteus oculatus</scientific_name>\r
1317                                               <authority>Winchell, 1864</authority>\r
1318                                               <common_name>Spotted gar</common_name>\r
1319                                               <rank>species</rank>\r
1320                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0804/0024.jpeg</uri>\r
1321                                               <uri>http://fishbase.org/images/species/Leocu_u8.jpg</uri>\r
1322                                             </taxonomy>\r
1323                                           </clade>\r
1324                                         </clade>\r
1325                                         <clade>\r
1326                                           <taxonomy>\r
1327                                             <id provider="uniprot">7899</id>\r
1328                                             <scientific_name>Acipenseriformes</scientific_name>\r
1329                                             <rank>order</rank>\r
1330                                           </taxonomy>\r
1331                                           <clade>\r
1332                                             <taxonomy>\r
1333                                               <id provider="uniprot">7913</id>\r
1334                                               <code>POLSP</code>\r
1335                                               <scientific_name>Polyodon spathula</scientific_name>\r
1336                                               <common_name>North American paddlefish</common_name>\r
1337                                               <synonym>Squalus spathula</synonym>\r
1338                                               <rank>species</rank>\r
1339                                               <uri>http://www.fishbase.org/images/species/Pospa_u0.jpg</uri>\r
1340                                             </taxonomy>\r
1341                                           </clade>\r
1342                                           <clade>\r
1343                                             <taxonomy>\r
1344                                               <id provider="uniprot">55293</id>\r
1345                                               <scientific_name>Huso dauricus</scientific_name>\r
1346                                               <common_name>Kaluga</common_name>\r
1347                                               <rank>species</rank>\r
1348                                               <uri>http://www.theanimalworld.ru/img/encycl/fish/big/kaluga.jpg</uri>\r
1349                                             </taxonomy>\r
1350                                           </clade>\r
1351                                         </clade>\r
1352                                       </clade>\r
1353                                       <clade>\r
1354                                         <taxonomy>\r
1355                                           <id provider="uniprot">27687</id>\r
1356                                           <code>ERPCA</code>\r
1357                                           <scientific_name>Erpetoichthys calabaricus</scientific_name>\r
1358                                           <common_name>Rope fish</common_name>\r
1359                                           <synonym>Calamoichthys calabaricus</synonym>\r
1360                                           <rank>species</rank>\r
1361                                           <uri>http://www.biolib.cz/IMG/GAL/8029.jpg</uri>\r
1362                                         </taxonomy>\r
1363                                       </clade>\r
1364                                     </clade>\r
1365                                   </clade>\r
1366                                   <clade>\r
1367                                     <taxonomy>\r
1368                                       <id provider="uniprot">7868</id>\r
1369                                       <code>CALMI</code>\r
1370                                       <scientific_name>Callorhynchus milii</scientific_name>\r
1371                                       <common_name>Australian ghost shark</common_name>\r
1372                                       <synonym>Australian ghost shark</synonym>\r
1373                                       <rank>species</rank>\r
1374                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1375                                     </taxonomy>\r
1376                                   </clade>\r
1377                                 </clade>\r
1378                                 <clade>\r
1379                                   <taxonomy>\r
1380                                     <id provider="uniprot">7757</id>\r
1381                                     <code>PETMA</code>\r
1382                                     <scientific_name>Petromyzon marinus</scientific_name>\r
1383                                     <common_name>Sea lamprey</common_name>\r
1384                                     <rank>species</rank>\r
1385                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1386                                   </taxonomy>\r
1387                                 </clade>\r
1388                               </clade>\r
1389                               <clade>\r
1390                                 <name>Urochordata</name>\r
1391                                 <taxonomy>\r
1392                                   <id provider="uniprot">7712</id>\r
1393                                   <scientific_name>Urochordata</scientific_name>\r
1394                                   <rank>subphylum</rank>\r
1395                                 </taxonomy>\r
1396                                 <clade>\r
1397                                   <taxonomy>\r
1398                                     <id provider="uniprot">7718</id>\r
1399                                     <scientific_name>Ciona</scientific_name>\r
1400                                     <rank>genus</rank>\r
1401                                   </taxonomy>\r
1402                                   <clade>\r
1403                                     <taxonomy>\r
1404                                       <id provider="uniprot">7719</id>\r
1405                                       <code>CIOIN</code>\r
1406                                       <scientific_name>Ciona intestinalis</scientific_name>\r
1407                                       <common_name>Transparent sea squirt</common_name>\r
1408                                       <synonym>Ascidia intestinalis</synonym>\r
1409                                       <rank>species</rank>\r
1410                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1411                                     </taxonomy>\r
1412                                   </clade>\r
1413                                   <clade>\r
1414                                     <taxonomy>\r
1415                                       <id provider="uniprot">51511</id>\r
1416                                       <code>CIOSA</code>\r
1417                                       <scientific_name>Ciona savignyi</scientific_name>\r
1418                                       <common_name>Pacific transparent sea squirt</common_name>\r
1419                                       <rank>species</rank>\r
1420                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1421                                     </taxonomy>\r
1422                                   </clade>\r
1423                                 </clade>\r
1424                                 <clade>\r
1425                                   <taxonomy>\r
1426                                     <id provider="ncbi">34765</id>\r
1427                                     <code>OIKDI</code>\r
1428                                     <scientific_name>Oikopleura dioica</scientific_name>\r
1429                                     <common_name>Tunicate</common_name>\r
1430                                     <rank>species</rank>\r
1431                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1432                                   </taxonomy>\r
1433                                 </clade>\r
1434                               </clade>\r
1435                             </clade>\r
1436                             <clade>\r
1437                               <taxonomy>\r
1438                                 <id provider="uniprot">7739</id>\r
1439                                 <code>BRAFL</code>\r
1440                                 <scientific_name>Branchiostoma floridae</scientific_name>\r
1441                                 <common_name>Florida lancelet</common_name>\r
1442                                 <synonym>Amphioxus</synonym>\r
1443                                 <rank>species</rank>\r
1444                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>\r
1445                               </taxonomy>\r
1446                             </clade>\r
1447                           </clade>\r
1448                           <clade>\r
1449                             <name>Hemichordata &amp; Echinodermata</name>\r
1450                             <clade>\r
1451                               <taxonomy>\r
1452                                 <id provider="uniprot">7586</id>\r
1453                                 <scientific_name>Echinodermata</scientific_name>\r
1454                                 <rank>phylum</rank>\r
1455                               </taxonomy>\r
1456                               <clade>\r
1457                                 <taxonomy>\r
1458                                   <id provider="uniprot">133551</id>\r
1459                                   <scientific_name>Eleutherozoa</scientific_name>\r
1460                                   <rank>subphylum</rank>\r
1461                                 </taxonomy>\r
1462                                 <clade>\r
1463                                   <taxonomy>\r
1464                                     <id provider="uniprot">7674</id>\r
1465                                     <scientific_name>Echinacea</scientific_name>\r
1466                                     <rank>superorder</rank>\r
1467                                   </taxonomy>\r
1468                                   <clade>\r
1469                                     <taxonomy>\r
1470                                       <id provider="uniprot">7654</id>\r
1471                                       <code>LYTVA</code>\r
1472                                       <scientific_name>Lytechinus variegatus</scientific_name>\r
1473                                       <common_name>Green sea urchin</common_name>\r
1474                                       <synonym>Variegated urchin</synonym>\r
1475                                       <rank>species</rank>\r
1476                                       <uri>http://imagess3.enature.com/seashore/seashore_l/sc0090_1l.jpg</uri>\r
1477                                     </taxonomy>\r
1478                                   </clade>\r
1479                                   <clade>\r
1480                                     <taxonomy>\r
1481                                       <id provider="uniprot">7668</id>\r
1482                                       <code>STRPU</code>\r
1483                                       <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1484                                       <common_name>Purple sea urchin</common_name>\r
1485                                       <rank>species</rank>\r
1486                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1487                                     </taxonomy>\r
1488                                   </clade>\r
1489                                 </clade>\r
1490                                 <clade>\r
1491                                   <taxonomy>\r
1492                                     <id provider="uniprot">46514</id>\r
1493                                     <code>PATMI</code>\r
1494                                     <scientific_name>Patiria miniata</scientific_name>\r
1495                                     <common_name>Bat star</common_name>\r
1496                                     <synonym>Asterina miniata</synonym>\r
1497                                     <rank>species</rank>\r
1498                                     <uri>http://calphotos.berkeley.edu/imgs/256x384/9092_3191/3549/0105.jpeg</uri>\r
1499                                   </taxonomy>\r
1500                                 </clade>\r
1501                               </clade>\r
1502                               <clade>\r
1503                                 <taxonomy>\r
1504                                   <id provider="uniprot">73431</id>\r
1505                                   <scientific_name>Florometra serratissima</scientific_name>\r
1506                                   <common_name>common feather star</common_name>\r
1507                                   <rank>species</rank>\r
1508                                   <uri>http://www.alaska-in-pictures.com/data/media/1/feather-star-pattern_6081.jpg</uri>\r
1509                                 </taxonomy>\r
1510                               </clade>\r
1511                             </clade>\r
1512                             <clade>\r
1513                               <taxonomy>\r
1514                                 <id provider="uniprot">10224</id>\r
1515                                 <code>SACKO</code>\r
1516                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1517                                 <authority>Agassiz, 1873</authority>\r
1518                                 <common_name>Acorn worm</common_name>\r
1519                                 <rank>species</rank>\r
1520                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>\r
1521                               </taxonomy>\r
1522                             </clade>\r
1523                           </clade>\r
1524                         </clade>\r
1525                         <clade>\r
1526                           <taxonomy>\r
1527                             <id provider="uniprot">33317</id>\r
1528                             <scientific_name>Protostomia</scientific_name>\r
1529                           </taxonomy>\r
1530                           <clade>\r
1531                             <taxonomy>\r
1532                               <id provider="uniprot">1206794</id>\r
1533                               <scientific_name>Ecdysozoa</scientific_name>\r
1534                             </taxonomy>\r
1535                             <reference doi="10.1098/rstb.2007.2243">\r
1536                               <desc>The evolution of the Ecdysozoa</desc>\r
1537                             </reference>\r
1538                             <clade>\r
1539                               <taxonomy>\r
1540                                 <id provider="uniprot">88770</id>\r
1541                                 <scientific_name>Panarthropoda</scientific_name>\r
1542                               </taxonomy>\r
1543                               <clade>\r
1544                                 <name>Onychophora &amp; Arthropoda</name>\r
1545                                 <reference doi="10.1073/pnas.1105499108">\r
1546                                   <desc>MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda</desc>\r
1547                                 </reference>\r
1548                                 <clade>\r
1549                                   <taxonomy>\r
1550                                     <id provider="uniprot">6656</id>\r
1551                                     <scientific_name>Arthropoda</scientific_name>\r
1552                                     <rank>phylum</rank>\r
1553                                   </taxonomy>\r
1554                                   <reference doi="10.1098/rspb.2010.0590">\r
1555                                     <desc>A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata</desc>\r
1556                                   </reference>\r
1557                                   <clade>\r
1558                                     <taxonomy>\r
1559                                       <id provider="uniprot">197563</id>\r
1560                                       <scientific_name>Mandibulata</scientific_name>\r
1561                                     </taxonomy>\r
1562                                     <reference doi="doi:10.1038/ncomms3485">\r
1563                                       <desc>Arthropod fossil data increase congruence of morphological and molecular phylogenies</desc>\r
1564                                     </reference>\r
1565                                     <reference>\r
1566                                     </reference>\r
1567                                     <clade>\r
1568                                       <taxonomy>\r
1569                                         <id provider="uniprot">197562</id>\r
1570                                         <scientific_name>Pancrustacea</scientific_name>\r
1571                                       </taxonomy>\r
1572                                       <clade>\r
1573                                         <taxonomy>\r
1574                                           <id provider="uniprot">6960</id>\r
1575                                           <scientific_name>Hexapoda</scientific_name>\r
1576                                           <rank>superclass</rank>\r
1577                                         </taxonomy>\r
1578                                         <clade>\r
1579                                           <taxonomy>\r
1580                                             <id provider="uniprot">50557</id>\r
1581                                             <scientific_name>Insecta</scientific_name>\r
1582                                             <rank>class</rank>\r
1583                                           </taxonomy>\r
1584                                           <reference doi="10.1146/annurev-ento-120710-100538">\r
1585                                             <desc>Advances in Insect Phylogeny at the Dawn of the Postgenomic Era</desc>\r
1586                                           </reference>\r
1587                                           <reference>\r
1588                                           </reference>\r
1589                                           <clade>\r
1590                                             <taxonomy>\r
1591                                               <id provider="uniprot">33340</id>\r
1592                                               <scientific_name>Neoptera</scientific_name>\r
1593                                               <rank>subclass</rank>\r
1594                                             </taxonomy>\r
1595                                             <clade>\r
1596                                               <taxonomy>\r
1597                                                 <id provider="uniprot">33392</id>\r
1598                                                 <scientific_name>Endopterygota</scientific_name>\r
1599                                                 <synonym>Holometabola</synonym>\r
1600                                                 <rank>infraclass</rank>\r
1601                                               </taxonomy>\r
1602                                               <clade>\r
1603                                                 <name>Mecopterida &amp; Neuropteroidea</name>\r
1604                                                 <clade>\r
1605                                                   <taxonomy>\r
1606                                                     <scientific_name>Mecopterida</scientific_name>\r
1607                                                   </taxonomy>\r
1608                                                   <reference>\r
1609                                                     <desc>The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei</desc>\r
1610                                                   </reference>\r
1611                                                   <clade>\r
1612                                                     <taxonomy>\r
1613                                                       <id provider="uniprot">7147</id>\r
1614                                                       <scientific_name>Diptera</scientific_name>\r
1615                                                       <rank>order</rank>\r
1616                                                     </taxonomy>\r
1617                                                     <clade>\r
1618                                                       <taxonomy>\r
1619                                                         <id provider="uniprot">7215</id>\r
1620                                                         <scientific_name>Drosophila</scientific_name>\r
1621                                                         <common_name>fruit flies</common_name>\r
1622                                                         <rank>genus</rank>\r
1623                                                       </taxonomy>\r
1624                                                       <reference doi="10.1534/genetics.111.126540">\r
1625                                                         <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
1626                                                       </reference>\r
1627                                                       <clade>\r
1628                                                         <taxonomy>\r
1629                                                           <id provider="uniprot">32341</id>\r
1630                                                           <scientific_name>Sophophora</scientific_name>\r
1631                                                           <rank>subgenus</rank>\r
1632                                                         </taxonomy>\r
1633                                                         <clade>\r
1634                                                           <name>melanogaster &amp; pseudoobscura subgroups</name>\r
1635                                                           <clade>\r
1636                                                             <taxonomy>\r
1637                                                               <id provider="uniprot">32346</id>\r
1638                                                               <scientific_name>melanogaster group</scientific_name>\r
1639                                                             </taxonomy>\r
1640                                                             <clade>\r
1641                                                               <taxonomy>\r
1642                                                                 <id provider="uniprot">32351</id>\r
1643                                                                 <scientific_name>melanogaster subgroup</scientific_name>\r
1644                                                               </taxonomy>\r
1645                                                               <clade>\r
1646                                                                 <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
1647                                                                 <clade>\r
1648                                                                   <name>DROSE &amp; DROSI &amp; DROME</name>\r
1649                                                                   <clade>\r
1650                                                                     <name>DROSE &amp; DROSI</name>\r
1651                                                                     <clade>\r
1652                                                                       <taxonomy>\r
1653                                                                         <id provider="uniprot">7238</id>\r
1654                                                                         <code>DROSE</code>\r
1655                                                                         <scientific_name>Drosophila sechellia</scientific_name>\r
1656                                                                         <common_name>Fruit fly</common_name>\r
1657                                                                         <rank>species</rank>\r
1658                                                                       </taxonomy>\r
1659                                                                     </clade>\r
1660                                                                     <clade>\r
1661                                                                       <taxonomy>\r
1662                                                                         <id provider="uniprot">7240</id>\r
1663                                                                         <code>DROSI</code>\r
1664                                                                         <scientific_name>Drosophila simulans</scientific_name>\r
1665                                                                         <common_name>Fruit fly</common_name>\r
1666                                                                         <rank>species</rank>\r
1667                                                                       </taxonomy>\r
1668                                                                     </clade>\r
1669                                                                   </clade>\r
1670                                                                   <clade>\r
1671                                                                     <taxonomy>\r
1672                                                                       <id provider="uniprot">7227</id>\r
1673                                                                       <code>DROME</code>\r
1674                                                                       <scientific_name>Drosophila melanogaster</scientific_name>\r
1675                                                                       <common_name>Fruit fly</common_name>\r
1676                                                                       <rank>species</rank>\r
1677                                                                       <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
1678                                                                     </taxonomy>\r
1679                                                                   </clade>\r
1680                                                                 </clade>\r
1681                                                                 <clade>\r
1682                                                                   <taxonomy>\r
1683                                                                     <id provider="uniprot">7245</id>\r
1684                                                                     <code>DROYA</code>\r
1685                                                                     <scientific_name>Drosophila yakuba</scientific_name>\r
1686                                                                     <common_name>Fruit fly</common_name>\r
1687                                                                     <rank>species</rank>\r
1688                                                                   </taxonomy>\r
1689                                                                 </clade>\r
1690                                                               </clade>\r
1691                                                               <clade>\r
1692                                                                 <taxonomy>\r
1693                                                                   <id provider="uniprot">7220</id>\r
1694                                                                   <code>DROER</code>\r
1695                                                                   <scientific_name>Drosophila erecta</scientific_name>\r
1696                                                                   <common_name>Fruit fly</common_name>\r
1697                                                                   <rank>species</rank>\r
1698                                                                 </taxonomy>\r
1699                                                               </clade>\r
1700                                                             </clade>\r
1701                                                             <clade>\r
1702                                                               <taxonomy>\r
1703                                                                 <id provider="uniprot">7217</id>\r
1704                                                                 <code>DROAN</code>\r
1705                                                                 <scientific_name>Drosophila ananassae</scientific_name>\r
1706                                                                 <common_name>Fruit fly</common_name>\r
1707                                                                 <rank>species</rank>\r
1708                                                               </taxonomy>\r
1709                                                             </clade>\r
1710                                                           </clade>\r
1711                                                           <clade>\r
1712                                                             <taxonomy>\r
1713                                                               <id provider="uniprot">32358</id>\r
1714                                                               <scientific_name>pseudoobscura subgroup</scientific_name>\r
1715                                                             </taxonomy>\r
1716                                                             <clade>\r
1717                                                               <taxonomy>\r
1718                                                                 <id provider="uniprot">7234</id>\r
1719                                                                 <code>DROPE</code>\r
1720                                                                 <scientific_name>Drosophila persimilis</scientific_name>\r
1721                                                                 <common_name>Fruit fly</common_name>\r
1722                                                                 <rank>species</rank>\r
1723                                                               </taxonomy>\r
1724                                                             </clade>\r
1725                                                             <clade>\r
1726                                                               <taxonomy>\r
1727                                                                 <id provider="uniprot">46245</id>\r
1728                                                                 <code>DROPS</code>\r
1729                                                                 <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1730                                                                 <common_name>Fruit fly</common_name>\r
1731                                                                 <rank>subspecies</rank>\r
1732                                                                 <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
1733                                                               </taxonomy>\r
1734                                                             </clade>\r
1735                                                           </clade>\r
1736                                                         </clade>\r
1737                                                         <clade>\r
1738                                                           <taxonomy>\r
1739                                                             <id provider="uniprot">7260</id>\r
1740                                                             <code>DROWI</code>\r
1741                                                             <scientific_name>Drosophila willistoni</scientific_name>\r
1742                                                             <common_name>Fruit fly</common_name>\r
1743                                                             <rank>species</rank>\r
1744                                                           </taxonomy>\r
1745                                                         </clade>\r
1746                                                       </clade>\r
1747                                                       <clade>\r
1748                                                         <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
1749                                                         <clade>\r
1750                                                           <name>Drosophila subgenus</name>\r
1751                                                           <clade>\r
1752                                                             <taxonomy>\r
1753                                                               <id provider="uniprot">7230</id>\r
1754                                                               <code>DROMO</code>\r
1755                                                               <scientific_name>Drosophila mojavensis</scientific_name>\r
1756                                                               <common_name>Fruit fly</common_name>\r
1757                                                               <rank>species</rank>\r
1758                                                             </taxonomy>\r
1759                                                           </clade>\r
1760                                                           <clade>\r
1761                                                             <taxonomy>\r
1762                                                               <id provider="uniprot">7244</id>\r
1763                                                               <code>DROVI</code>\r
1764                                                               <scientific_name>Drosophila virilis</scientific_name>\r
1765                                                               <common_name>Fruit fly</common_name>\r
1766                                                               <rank>species</rank>\r
1767                                                             </taxonomy>\r
1768                                                           </clade>\r
1769                                                         </clade>\r
1770                                                         <clade>\r
1771                                                           <taxonomy>\r
1772                                                             <id provider="uniprot">7222</id>\r
1773                                                             <code>DROGR</code>\r
1774                                                             <scientific_name>Drosophila grimshawi</scientific_name>\r
1775                                                             <common_name>Fruit fly</common_name>\r
1776                                                             <synonym>Idiomyia grimshawi</synonym>\r
1777                                                             <rank>species</rank>\r
1778                                                             <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
1779                                                           </taxonomy>\r
1780                                                         </clade>\r
1781                                                       </clade>\r
1782                                                     </clade>\r
1783                                                     <clade>\r
1784                                                       <taxonomy>\r
1785                                                         <id provider="uniprot">7157</id>\r
1786                                                         <scientific_name>Culicidae</scientific_name>\r
1787                                                         <common_name>mosquitos</common_name>\r
1788                                                         <rank>family</rank>\r
1789                                                       </taxonomy>\r
1790                                                       <clade>\r
1791                                                         <taxonomy>\r
1792                                                           <id provider="uniprot">7159</id>\r
1793                                                           <code>AEDAE</code>\r
1794                                                           <scientific_name>Aedes aegypti</scientific_name>\r
1795                                                           <common_name>Yellowfever mosquito</common_name>\r
1796                                                           <synonym>Culex aegypti</synonym>\r
1797                                                           <rank>species</rank>\r
1798                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1799                                                         </taxonomy>\r
1800                                                       </clade>\r
1801                                                       <clade>\r
1802                                                         <taxonomy>\r
1803                                                           <id provider="uniprot">7165</id>\r
1804                                                           <code>ANOGA</code>\r
1805                                                           <scientific_name>Anopheles gambiae</scientific_name>\r
1806                                                           <common_name>African malaria mosquito</common_name>\r
1807                                                           <rank>species</rank>\r
1808                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1809                                                         </taxonomy>\r
1810                                                       </clade>\r
1811                                                       <clade>\r
1812                                                         <taxonomy>\r
1813                                                           <id provider="uniprot">7175</id>\r
1814                                                           <code>CULPI</code>\r
1815                                                           <scientific_name>Culex pipiens</scientific_name>\r
1816                                                           <common_name>House mosquito</common_name>\r
1817                                                           <rank>species</rank>\r
1818                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg</uri>\r
1819                                                         </taxonomy>\r
1820                                                       </clade>\r
1821                                                     </clade>\r
1822                                                   </clade>\r
1823                                                   <clade>\r
1824                                                     <taxonomy>\r
1825                                                       <id provider="uniprot">37567</id>\r
1826                                                       <scientific_name>Ditrysia</scientific_name>\r
1827                                                     </taxonomy>\r
1828                                                     <clade>\r
1829                                                       <taxonomy>\r
1830                                                         <id provider="uniprot">7091</id>\r
1831                                                         <code>BOMMO</code>\r
1832                                                         <scientific_name>Bombyx mori</scientific_name>\r
1833                                                         <common_name>Silk moth</common_name>\r
1834                                                         <rank>species</rank>\r
1835                                                         <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>\r
1836                                                       </taxonomy>\r
1837                                                     </clade>\r
1838                                                     <clade>\r
1839                                                       <taxonomy>\r
1840                                                         <id provider="uniprot">13037</id>\r
1841                                                         <code>DANPL</code>\r
1842                                                         <scientific_name>Danaus plexippus</scientific_name>\r
1843                                                         <common_name>Monarch butterfly</common_name>\r
1844                                                         <rank>species</rank>\r
1845                                                         <uri>http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg</uri>\r
1846                                                         <uri>http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg</uri>\r
1847                                                       </taxonomy>\r
1848                                                     </clade>\r
1849                                                   </clade>\r
1850                                                 </clade>\r
1851                                                 <clade>\r
1852                                                   <taxonomy>\r
1853                                                     <id provider="uniprot">41088</id>\r
1854                                                     <scientific_name>Cucujiformia</scientific_name>\r
1855                                                     <rank>infraorder</rank>\r
1856                                                   </taxonomy>\r
1857                                                   <clade>\r
1858                                                     <taxonomy>\r
1859                                                       <id provider="uniprot">217634</id>\r
1860                                                       <code>ANOGL</code>\r
1861                                                       <scientific_name>Anoplophora glabripennis</scientific_name>\r
1862                                                       <common_name>Asian longhorn beetle</common_name>\r
1863                                                       <synonym>Anoplophora nobilis</synonym>\r
1864                                                       <rank>species</rank>\r
1865                                                       <uri>http://bugguide.net/images/cache/WZMLBZXL2Z2HTH4HHR2H3H2HJH9H9Z5LJH5LWZ7LAZSLTH4HPZXHDHKLVZEH9ZEHRRPHJH7LAZPHZR4L3H7H3H9HZR.jpg</uri>\r
1866                                                     </taxonomy>\r
1867                                                   </clade>\r
1868                                                   <clade>\r
1869                                                     <taxonomy>\r
1870                                                       <id provider="uniprot">7070</id>\r
1871                                                       <code>TRICA</code>\r
1872                                                       <scientific_name>Tribolium castaneum</scientific_name>\r
1873                                                       <common_name>Red flour beetle</common_name>\r
1874                                                       <rank>species</rank>\r
1875                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>\r
1876                                                     </taxonomy>\r
1877                                                   </clade>\r
1878                                                 </clade>\r
1879                                               </clade>\r
1880                                               <clade>\r
1881                                                 <taxonomy>\r
1882                                                   <id provider="uniprot">7400</id>\r
1883                                                   <scientific_name>Apocrita</scientific_name>\r
1884                                                   <common_name>wasps, ants and bees</common_name>\r
1885                                                 </taxonomy>\r
1886                                                 <clade>\r
1887                                                   <taxonomy>\r
1888                                                     <id provider="uniprot">7434</id>\r
1889                                                     <scientific_name>Aculeata</scientific_name>\r
1890                                                     <rank>suborder</rank>\r
1891                                                   </taxonomy>\r
1892                                                   <clade>\r
1893                                                     <taxonomy>\r
1894                                                       <id provider="uniprot">36668</id>\r
1895                                                       <scientific_name>Formicidae</scientific_name>\r
1896                                                       <rank>family</rank>\r
1897                                                     </taxonomy>\r
1898                                                     <clade>\r
1899                                                       <taxonomy>\r
1900                                                         <id provider="uniprot">34695</id>\r
1901                                                         <scientific_name>Myrmicinae</scientific_name>\r
1902                                                         <rank>subfamily</rank>\r
1903                                                       </taxonomy>\r
1904                                                       <clade>\r
1905                                                         <taxonomy>\r
1906                                                           <id provider="uniprot">12957</id>\r
1907                                                           <code>ATTCE</code>\r
1908                                                           <scientific_name>Atta cephalotes</scientific_name>\r
1909                                                           <authority>Linnaeus, 1758</authority>\r
1910                                                           <common_name>Leafcutter ant</common_name>\r
1911                                                           <rank>species</rank>\r
1912                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
1913                                                         </taxonomy>\r
1914                                                       </clade>\r
1915                                                       <clade>\r
1916                                                         <taxonomy>\r
1917                                                           <id provider="uniprot">103372</id>\r
1918                                                           <code>ACREC</code>\r
1919                                                           <scientific_name>Acromyrmex echinatior</scientific_name>\r
1920                                                           <authority>Forel, 1899</authority>\r
1921                                                           <common_name>Panamanian leafcutter ant</common_name>\r
1922                                                           <synonym>Acromyrmex octospinosus echinatior</synonym>\r
1923                                                           <rank>species</rank>\r
1924                                                           <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>\r
1925                                                         </taxonomy>\r
1926                                                       </clade>\r
1927                                                     </clade>\r
1928                                                     <clade>\r
1929                                                       <taxonomy>\r
1930                                                         <id provider="uniprot">104421</id>\r
1931                                                         <code>CAMFO</code>\r
1932                                                         <scientific_name>Camponotus floridanus</scientific_name>\r
1933                                                         <authority>Buckley, 1866</authority>\r
1934                                                         <common_name>Florida carpenter ant</common_name>\r
1935                                                         <rank>species</rank>\r
1936                                                         <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>\r
1937                                                       </taxonomy>\r
1938                                                     </clade>\r
1939                                                   </clade>\r
1940                                                   <clade>\r
1941                                                     <taxonomy>\r
1942                                                       <id provider="uniprot">7460</id>\r
1943                                                       <code>APIME</code>\r
1944                                                       <scientific_name>Apis mellifera</scientific_name>\r
1945                                                       <common_name>Honeybee</common_name>\r
1946                                                       <rank>species</rank>\r
1947                                                       <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
1948                                                     </taxonomy>\r
1949                                                   </clade>\r
1950                                                 </clade>\r
1951                                                 <clade>\r
1952                                                   <taxonomy>\r
1953                                                     <id provider="uniprot">7425</id>\r
1954                                                     <code>NASVI</code>\r
1955                                                     <scientific_name>Nasonia vitripennis</scientific_name>\r
1956                                                     <common_name>Parasitic wasp</common_name>\r
1957                                                     <rank>species</rank>\r
1958                                                     <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
1959                                                   </taxonomy>\r
1960                                                 </clade>\r
1961                                               </clade>\r
1962                                               <clade>\r
1963                                                 <taxonomy>\r
1964                                                   <id provider="uniprot">33341</id>\r
1965                                                   <scientific_name>Orthopteroidea</scientific_name>\r
1966                                                   <rank>infraclass</rank>\r
1967                                                 </taxonomy>\r
1968                                                 <clade>\r
1969                                                   <taxonomy>\r
1970                                                     <id provider="uniprot">6970</id>\r
1971                                                     <scientific_name>Dictyoptera</scientific_name>\r
1972                                                     <rank>superorder</rank>\r
1973                                                   </taxonomy>\r
1974                                                   <clade>\r
1975                                                     <taxonomy>\r
1976                                                       <id provider="uniprot">6973</id>\r
1977                                                       <code>BLAGE</code>\r
1978                                                       <scientific_name>Blattella germanica</scientific_name>\r
1979                                                       <common_name>German cockroach</common_name>\r
1980                                                       <synonym>Blatta germanica</synonym>\r
1981                                                       <rank>species</rank>\r
1982                                                       <uri>http://www.biopix.com/photosmedium/Blattella%20germanica%2000017.JPG</uri>\r
1983                                                     </taxonomy>\r
1984                                                   </clade>\r
1985                                                   <clade>\r
1986                                                     <taxonomy>\r
1987                                                       <id provider="uniprot">136037</id>\r
1988                                                       <code>ZOONE</code>\r
1989                                                       <scientific_name>Zootermopsis nevadensis</scientific_name>\r
1990                                                       <common_name>Dampwood termite</common_name>\r
1991                                                       <rank>species</rank>\r
1992                                                       <uri>http://bugguide.net/images/cache/GQA0PQ10VQPK4KAKRKWKSKEKLKWKPQZS5KBK1QCK7KJ05KOK8KAKRK9K4QUK6Q10RKWKHKT02QWKSKEK5Q9KPQD0PQ.jpg</uri>\r
1993                                                     </taxonomy>\r
1994                                                   </clade>\r
1995                                                 </clade>\r
1996                                                 <clade>\r
1997                                                   <taxonomy>\r
1998                                                     <id provider="uniprot">6993</id>\r
1999                                                     <scientific_name>Orthoptera</scientific_name>\r
2000                                                     <rank>order</rank>\r
2001                                                   </taxonomy>\r
2002                                                   <clade>\r
2003                                                     <taxonomy>\r
2004                                                       <id provider="uniprot">7009</id>\r
2005                                                       <code>SCHAM</code>\r
2006                                                       <scientific_name>Schistocerca americana</scientific_name>\r
2007                                                       <common_name>American grasshopper</common_name>\r
2008                                                       <rank>species</rank>\r
2009                                                       <uri>http://bugguide.net/images/cache/BH7HOHIHZRZLAZXLVZQL4ZKL4Z4H6Z4HRRNHLR5HZR2HAHGHAHSLAHKL1H7HDH7H3HUH1ZXLUZGL3H2HAHZLAHXH.jpg</uri>\r
2010                                                     </taxonomy>\r
2011                                                   </clade>\r
2012                                                   <clade>\r
2013                                                     <taxonomy>\r
2014                                                       <id provider="uniprot">51074</id>\r
2015                                                       <code>GRYPE</code>\r
2016                                                       <scientific_name>Gryllus pennsylvanicus</scientific_name>\r
2017                                                       <common_name>Field cricket</common_name>\r
2018                                                       <rank>species</rank>\r
2019                                                       <uri>http://bugguide.net/images/raw/GL9Z5L9Z8LJHWHHR6HRREHVZUHCHIH8Z7HVHMHGZ7HTHQL6ZXHOHWH3H5LUZ7L9ZRLVH5HDHQL.jpg</uri>\r
2020                                                     </taxonomy>\r
2021                                                   </clade>\r
2022                                                 </clade>\r
2023                                               </clade>\r
2024                                             </clade>\r
2025                                             <clade>\r
2026                                               <taxonomy>\r
2027                                                 <id provider="uniprot">33342</id>\r
2028                                                 <scientific_name>Paraneoptera</scientific_name>\r
2029                                                 <rank>infraclass</rank>\r
2030                                               </taxonomy>\r
2031                                               <clade>\r
2032                                                 <taxonomy>\r
2033                                                   <id provider="uniprot">7524</id>\r
2034                                                   <scientific_name>Hemiptera</scientific_name>\r
2035                                                   <rank>order</rank>\r
2036                                                 </taxonomy>\r
2037                                                 <clade>\r
2038                                                   <taxonomy>\r
2039                                                     <id provider="uniprot">33351</id>\r
2040                                                     <scientific_name>Panheteroptera</scientific_name>\r
2041                                                   </taxonomy>\r
2042                                                   <clade>\r
2043                                                     <taxonomy>\r
2044                                                       <id provider="uniprot">7536</id>\r
2045                                                       <code>ONCFA</code>\r
2046                                                       <scientific_name>Oncopeltus fasciatus</scientific_name>\r
2047                                                       <common_name>Large milkweed bug</common_name>\r
2048                                                       <rank>species</rank>\r
2049                                                       <uri>http://bugguide.net/images/cache/309QLSWQT0IKUKSK2KSKUKRKUKGKBKRKNK6QD05QC05Q6KZKPKGQD00K9KGQ2KLKWK8QV0KKO0EQV0EQNK8Q2KGQ10.jpg</uri>\r
2050                                                     </taxonomy>\r
2051                                                   </clade>\r
2052                                                   <clade>\r
2053                                                     <taxonomy>\r
2054                                                       <id provider="uniprot">13249</id>\r
2055                                                       <code>RHOPR</code>\r
2056                                                       <scientific_name>Rhodnius prolixus</scientific_name>\r
2057                                                       <common_name>Triatomid bug</common_name>\r
2058                                                       <rank>species</rank>\r
2059                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
2060                                                     </taxonomy>\r
2061                                                   </clade>\r
2062                                                 </clade>\r
2063                                                 <clade>\r
2064                                                   <taxonomy>\r
2065                                                     <id provider="uniprot">7029</id>\r
2066                                                     <code>ACYPI</code>\r
2067                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>\r
2068                                                     <common_name>Pea aphid</common_name>\r
2069                                                     <rank>species</rank>\r
2070                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
2071                                                   </taxonomy>\r
2072                                                 </clade>\r
2073                                               </clade>\r
2074                                               <clade>\r
2075                                                 <taxonomy>\r
2076                                                   <id provider="uniprot">121224</id>\r
2077                                                   <code>PEDHC</code>\r
2078                                                   <scientific_name>Pediculus humanus subsp. corporis</scientific_name>\r
2079                                                   <common_name>Body louse</common_name>\r
2080                                                   <rank>subspecies</rank>\r
2081                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>\r
2082                                                 </taxonomy>\r
2083                                               </clade>\r
2084                                             </clade>\r
2085                                           </clade>\r
2086                                           <clade>\r
2087                                             <taxonomy>\r
2088                                               <id provider="uniprot">568273</id>\r
2089                                               <scientific_name>Machilis germanica</scientific_name>\r
2090                                               <rank>species</rank>\r
2091                                               <uri>http://www.lucianabartolini.net/Immagini/Microcoryphia/Machilis-sp-02.jpg</uri>\r
2092                                             </taxonomy>\r
2093                                           </clade>\r
2094                                         </clade>\r
2095                                         <clade>\r
2096                                           <taxonomy>\r
2097                                             <id provider="uniprot">383857</id>\r
2098                                             <scientific_name>Campodea fragilis</scientific_name>\r
2099                                             <rank>species</rank>\r
2100                                             <uri>http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg</uri>\r
2101                                           </taxonomy>\r
2102                                         </clade>\r
2103                                       </clade>\r
2104                                       <clade>\r
2105                                         <taxonomy>\r
2106                                           <id provider="uniprot">6657</id>\r
2107                                           <scientific_name>Crustacea</scientific_name>\r
2108                                           <rank>subphylum</rank>\r
2109                                         </taxonomy>\r
2110                                         <clade>\r
2111                                           <taxonomy>\r
2112                                             <id provider="uniprot">6658</id>\r
2113                                             <scientific_name>Branchiopoda</scientific_name>\r
2114                                             <rank>class</rank>\r
2115                                           </taxonomy>\r
2116                                           <clade>\r
2117                                             <taxonomy>\r
2118                                               <id provider="uniprot">6661</id>\r
2119                                               <code>ARTSF</code>\r
2120                                               <scientific_name>Artemia franciscana</scientific_name>\r
2121                                               <common_name>Brine shrimp</common_name>\r
2122                                               <synonym>Artemia sanfranciscana</synonym>\r
2123                                               <rank>species</rank>\r
2124                                               <uri>http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg</uri>\r
2125                                             </taxonomy>\r
2126                                           </clade>\r
2127                                           <clade>\r
2128                                             <taxonomy>\r
2129                                               <id provider="uniprot">6669</id>\r
2130                                               <code>DAPPU</code>\r
2131                                               <scientific_name>Daphnia pulex</scientific_name>\r
2132                                               <common_name>Water flea</common_name>\r
2133                                               <rank>species</rank>\r
2134                                               <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
2135                                             </taxonomy>\r
2136                                           </clade>\r
2137                                         </clade>\r
2138                                         <clade>\r
2139                                           <taxonomy>\r
2140                                             <id provider="uniprot">6706</id>\r
2141                                             <code>HOMAM</code>\r
2142                                             <scientific_name>Homarus americanus</scientific_name>\r
2143                                             <common_name>American lobster</common_name>\r
2144                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg</uri>\r
2145                                           </taxonomy>\r
2146                                         </clade>\r
2147                                       </clade>\r
2148                                     </clade>\r
2149                                     <clade>\r
2150                                       <taxonomy>\r
2151                                         <id provider="uniprot">61985</id>\r
2152                                         <scientific_name>Myriapoda</scientific_name>\r
2153                                         <rank>subphylum</rank>\r
2154                                       </taxonomy>\r
2155                                       <clade>\r
2156                                         <taxonomy>\r
2157                                           <id provider="uniprot">7553</id>\r
2158                                           <scientific_name>Diplopoda</scientific_name>\r
2159                                           <common_name>millipedes</common_name>\r
2160                                           <rank>class</rank>\r
2161                                         </taxonomy>\r
2162                                         <clade>\r
2163                                           <taxonomy>\r
2164                                             <id provider="uniprot">118561</id>\r
2165                                             <scientific_name>Helminthomorpha</scientific_name>\r
2166                                             <rank>subclass</rank>\r
2167                                           </taxonomy>\r
2168                                           <clade>\r
2169                                             <taxonomy>\r
2170                                               <id provider="uniprot">364406</id>\r
2171                                               <code>ANTGC</code>\r
2172                                               <scientific_name>Antrokoreana gracilipes</scientific_name>\r
2173                                               <common_name>Troglobite millipede</common_name>\r
2174                                               <rank>species</rank>\r
2175                                             </taxonomy>\r
2176                                           </clade>\r
2177                                           <clade>\r
2178                                             <taxonomy>\r
2179                                               <id provider="uniprot">174156</id>\r
2180                                               <code>NARAN</code>\r
2181                                               <scientific_name>Narceus annularis</scientific_name>\r
2182                                               <common_name>Millipede</common_name>\r
2183                                               <rank>species</rank>\r
2184                                               <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
2185                                             </taxonomy>\r
2186                                           </clade>\r
2187                                         </clade>\r
2188                                         <clade>\r
2189                                           <taxonomy>\r
2190                                             <id provider="uniprot">52428</id>\r
2191                                             <scientific_name>Polyxenus lagurus</scientific_name>\r
2192                                             <common_name>bristly millipede</common_name>\r
2193                                             <rank>species</rank>\r
2194                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
2195                                           </taxonomy>\r
2196                                         </clade>\r
2197                                       </clade>\r
2198                                       <clade>\r
2199                                         <taxonomy>\r
2200                                           <id provider="uniprot">7540</id>\r
2201                                           <scientific_name>Chilopoda</scientific_name>\r
2202                                           <common_name>centipedes</common_name>\r
2203                                           <rank>class</rank>\r
2204                                         </taxonomy>\r
2205                                         <clade>\r
2206                                           <taxonomy>\r
2207                                             <id provider="uniprot">29022</id>\r
2208                                             <code>SCUCO</code>\r
2209                                             <scientific_name>Scutigera coleoptrata</scientific_name>\r
2210                                             <common_name>House centipede</common_name>\r
2211                                             <rank>species</rank>\r
2212                                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
2213                                           </taxonomy>\r
2214                                         </clade>\r
2215                                         <clade>\r
2216                                           <taxonomy>\r
2217                                             <id provider="uniprot">126957</id>\r
2218                                             <code>STRMM</code>\r
2219                                             <scientific_name>Strigamia maritima</scientific_name>\r
2220                                             <common_name>European centipede</common_name>\r
2221                                             <synonym>Geophilus maritimus</synonym>\r
2222                                             <rank>species</rank>\r
2223                                             <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
2224                                           </taxonomy>\r
2225                                         </clade>\r
2226                                       </clade>\r
2227                                     </clade>\r
2228                                   </clade>\r
2229                                   <clade>\r
2230                                     <taxonomy>\r
2231                                       <id provider="uniprot">6843</id>\r
2232                                       <scientific_name>Chelicerata</scientific_name>\r
2233                                       <rank>subphylum</rank>\r
2234                                     </taxonomy>\r
2235                                     <reference doi="10.1016/j.ympev.2009.08.014">\r
2236                                       <desc>A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)</desc>\r
2237                                     </reference>\r
2238                                     <reference>\r
2239                                     </reference>\r
2240                                     <reference>\r
2241                                     </reference>\r
2242                                     <reference>\r
2243                                     </reference>\r
2244                                     <clade>\r
2245                                       <name>Arachnida &amp; Merostomata</name>\r
2246                                       <taxonomy>\r
2247                                         <id>Sea spider</id>\r
2248                                       </taxonomy>\r
2249                                       <clade>\r
2250                                         <taxonomy>\r
2251                                           <id provider="uniprot">6854</id>\r
2252                                           <scientific_name>Arachnida</scientific_name>\r
2253                                           <rank>class</rank>\r
2254                                         </taxonomy>\r
2255                                         <clade>\r
2256                                           <taxonomy>\r
2257                                             <id provider="uniprot">6933</id>\r
2258                                             <scientific_name>Acari</scientific_name>\r
2259                                             <common_name>mites &amp; ticks</common_name>\r
2260                                             <rank>subclass</rank>\r
2261                                           </taxonomy>\r
2262                                           <clade>\r
2263                                             <taxonomy>\r
2264                                               <id provider="uniprot">6945</id>\r
2265                                               <code>IXOSC</code>\r
2266                                               <scientific_name>Ixodes scapularis</scientific_name>\r
2267                                               <common_name>Black-legged tick</common_name>\r
2268                                               <synonym>Deer tick</synonym>\r
2269                                               <rank>species</rank>\r
2270                                               <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
2271                                             </taxonomy>\r
2272                                           </clade>\r
2273                                           <clade>\r
2274                                             <taxonomy>\r
2275                                               <id provider="uniprot">32264</id>\r
2276                                               <code>TETUR</code>\r
2277                                               <scientific_name>Tetranychus urticae</scientific_name>\r
2278                                               <common_name>Two-spotted spider mite</common_name>\r
2279                                               <rank>species</rank>\r
2280                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg</uri>\r
2281                                             </taxonomy>\r
2282                                           </clade>\r
2283                                         </clade>\r
2284                                         <clade>\r
2285                                           <taxonomy>\r
2286                                             <id provider="uniprot">34649</id>\r
2287                                             <code>MESMA</code>\r
2288                                             <scientific_name>Mesobuthus martensii</scientific_name>\r
2289                                             <authority>Karsch, 1879</authority>\r
2290                                             <common_name>Manchurian scorpion</common_name>\r
2291                                             <synonym>Buthus martensi</synonym>\r
2292                                             <synonym>Buthus martensii</synonym>\r
2293                                             <rank>species</rank>\r
2294                                             <uri>http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg</uri>\r
2295                                           </taxonomy>\r
2296                                         </clade>\r
2297                                       </clade>\r
2298                                       <clade>\r
2299                                         <taxonomy>\r
2300                                           <id provider="uniprot">6850</id>\r
2301                                           <code>LIMPO</code>\r
2302                                           <scientific_name>Limulus polyphemus</scientific_name>\r
2303                                           <common_name>Atlantic horseshoe crab</common_name>\r
2304                                           <rank>species</rank>\r
2305                                           <uri>http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG</uri>\r
2306                                         </taxonomy>\r
2307                                       </clade>\r
2308                                     </clade>\r
2309                                     <clade>\r
2310                                       <taxonomy>\r
2311                                         <id provider="uniprot">258330</id>\r
2312                                         <scientific_name>Ammothea hilgendorfi</scientific_name>\r
2313                                         <rank>species</rank>\r
2314                                         <uri>http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg</uri>\r
2315                                       </taxonomy>\r
2316                                     </clade>\r
2317                                   </clade>\r
2318                                 </clade>\r
2319                                 <clade>\r
2320                                   <taxonomy>\r
2321                                     <id provider="uniprot">488523</id>\r
2322                                     <scientific_name>Euperipatoides kanangrensis</scientific_name>\r
2323                                     <authority>Reid, 1996</authority>\r
2324                                     <rank>species</rank>\r
2325                                     <uri>http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg</uri>\r
2326                                     <uri>http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg</uri>\r
2327                                   </taxonomy>\r
2328                                 </clade>\r
2329                               </clade>\r
2330                               <clade>\r
2331                                 <taxonomy>\r
2332                                   <id provider="uniprot">232323</id>\r
2333                                   <code>HYPDU</code>\r
2334                                   <scientific_name>Hypsibius dujardini</scientific_name>\r
2335                                   <common_name>Water bear</common_name>\r
2336                                   <synonym>Macrobiotus dujardini</synonym>\r
2337                                   <rank>species</rank>\r
2338                                   <uri>http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg</uri>\r
2339                                 </taxonomy>\r
2340                               </clade>\r
2341                             </clade>\r
2342                             <clade>\r
2343                               <taxonomy>\r
2344                                 <id provider="uniprot">6231</id>\r
2345                                 <scientific_name>Nematoda</scientific_name>\r
2346                                 <common_name>roundworms</common_name>\r
2347                                 <rank>phylum</rank>\r
2348                               </taxonomy>\r
2349                               <reference doi="10.1371/journal.pbio.1001050">\r
2350                                 <desc>Nematodes: The Worm and Its Relatives</desc>\r
2351                               </reference>\r
2352                               <clade>\r
2353                                 <taxonomy>\r
2354                                   <id provider="uniprot">119089</id>\r
2355                                   <scientific_name>Chromadorea</scientific_name>\r
2356                                   <rank>class</rank>\r
2357                                 </taxonomy>\r
2358                                 <reference doi="10.1038/32160">\r
2359                                 </reference>\r
2360                                 <clade>\r
2361                                   <name>nematode clades IV and V</name>\r
2362                                   <clade>\r
2363                                     <name>nematode clade V</name>\r
2364                                     <clade>\r
2365                                       <taxonomy>\r
2366                                         <id provider="uniprot">6236</id>\r
2367                                         <scientific_name>Rhabditida</scientific_name>\r
2368                                         <rank>order</rank>\r
2369                                       </taxonomy>\r
2370                                       <clade>\r
2371                                         <taxonomy>\r
2372                                           <id provider="uniprot">6237</id>\r
2373                                           <scientific_name>Caenorhabditis</scientific_name>\r
2374                                           <rank>genus</rank>\r
2375                                         </taxonomy>\r
2376                                         <reference doi="10.1073/pnas.0403094101">\r
2377                                           <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>\r
2378                                         </reference>\r
2379                                         <clade>\r
2380                                           <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>\r
2381                                           <taxonomy>\r
2382                                             <id provider="uniprot">6238</id>\r
2383                                             <scientific_name>Caenorhabditis briggsae</scientific_name>\r
2384                                             <rank>species</rank>\r
2385                                           </taxonomy>\r
2386                                           <clade>\r
2387                                             <name>CAEBR &amp; CAERE &amp; CAEBE</name>\r
2388                                             <taxonomy>\r
2389                                               <id provider="uniprot">6238</id>\r
2390                                               <scientific_name>Caenorhabditis briggsae</scientific_name>\r
2391                                               <rank>species</rank>\r
2392                                             </taxonomy>\r
2393                                             <clade>\r
2394                                               <name>CAEBR &amp; CAERE</name>\r
2395                                               <taxonomy>\r
2396                                                 <id provider="uniprot">6238</id>\r
2397                                                 <scientific_name>Caenorhabditis briggsae</scientific_name>\r
2398                                                 <rank>species</rank>\r
2399                                               </taxonomy>\r
2400                                               <clade>\r
2401                                                 <taxonomy>\r
2402                                                   <id provider="uniprot">6238</id>\r
2403                                                   <code>CAEBR</code>\r
2404                                                   <scientific_name>Caenorhabditis briggsae</scientific_name>\r
2405                                                   <rank>species</rank>\r
2406                                                   <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>\r
2407                                                 </taxonomy>\r
2408                                               </clade>\r
2409                                               <clade>\r
2410                                                 <taxonomy>\r
2411                                                   <id provider="uniprot">31234</id>\r
2412                                                   <code>CAERE</code>\r
2413                                                   <scientific_name>Caenorhabditis remanei</scientific_name>\r
2414                                                   <synonym>Caenorhabditis vulgaris</synonym>\r
2415                                                   <rank>species</rank>\r
2416                                                   <uri>http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg</uri>\r
2417                                                 </taxonomy>\r
2418                                               </clade>\r
2419                                             </clade>\r
2420                                             <clade>\r
2421                                               <taxonomy>\r
2422                                                 <id provider="uniprot">135651</id>\r
2423                                                 <code>CAEBE</code>\r
2424                                                 <scientific_name>Caenorhabditis brenneri</scientific_name>\r
2425                                                 <common_name>Nematode worm</common_name>\r
2426                                                 <synonym>Caenorhabditis CB5161</synonym>\r
2427                                                 <rank>species</rank>\r
2428                                               </taxonomy>\r
2429                                             </clade>\r
2430                                           </clade>\r
2431                                           <clade>\r
2432                                             <taxonomy>\r
2433                                               <id provider="uniprot">6239</id>\r
2434                                               <code>CAEEL</code>\r
2435                                               <scientific_name>Caenorhabditis elegans</scientific_name>\r
2436                                               <rank>species</rank>\r
2437                                               <uri>http://www.easternct.edu/~adams/images/celegansmain.jpg</uri>\r
2438                                             </taxonomy>\r
2439                                           </clade>\r
2440                                         </clade>\r
2441                                         <clade>\r
2442                                           <taxonomy>\r
2443                                             <id provider="uniprot">281687</id>\r
2444                                             <code>CAEJA</code>\r
2445                                             <scientific_name>Caenorhabditis japonica</scientific_name>\r
2446                                             <rank>species</rank>\r
2447                                           </taxonomy>\r
2448                                         </clade>\r
2449                                       </clade>\r
2450                                       <clade>\r
2451                                         <taxonomy>\r
2452                                           <id provider="uniprot">53326</id>\r
2453                                           <scientific_name>Ancylostoma ceylanicum</scientific_name>\r
2454                                           <rank>species</rank>\r
2455                                         </taxonomy>\r
2456                                       </clade>\r
2457                                     </clade>\r
2458                                     <clade>\r
2459                                       <taxonomy>\r
2460                                         <id provider="uniprot">54126</id>\r
2461                                         <code>PRIPA</code>\r
2462                                         <scientific_name>Pristionchus pacificus</scientific_name>\r
2463                                         <common_name>Parasitic nematode</common_name>\r
2464                                         <rank>species</rank>\r
2465                                         <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>\r
2466                                       </taxonomy>\r
2467                                     </clade>\r
2468                                   </clade>\r
2469                                   <clade>\r
2470                                     <taxonomy>\r
2471                                       <id provider="uniprot">189290</id>\r
2472                                       <scientific_name>Meloidogyne</scientific_name>\r
2473                                       <rank>genus</rank>\r
2474                                     </taxonomy>\r
2475                                     <clade>\r
2476                                       <taxonomy>\r
2477                                         <id provider="uniprot">6306</id>\r
2478                                         <code>MELIC</code>\r
2479                                         <scientific_name>Meloidogyne incognita</scientific_name>\r
2480                                         <common_name>Southern root-knot nematode</common_name>\r
2481                                         <rank>species</rank>\r
2482                                       </taxonomy>\r
2483                                     </clade>\r
2484                                     <clade>\r
2485                                       <taxonomy>\r
2486                                         <id provider="uniprot">6305</id>\r
2487                                         <code>MELHA</code>\r
2488                                         <scientific_name>Meloidogyne hapla</scientific_name>\r
2489                                         <common_name>Root-knot nematode worm</common_name>\r
2490                                         <rank>species</rank>\r
2491                                       </taxonomy>\r
2492                                     </clade>\r
2493                                   </clade>\r
2494                                 </clade>\r
2495                                 <clade>\r
2496                                   <name>nematode clade III</name>\r
2497                                   <clade>\r
2498                                     <taxonomy>\r
2499                                       <id provider="uniprot">6296</id>\r
2500                                       <scientific_name>Onchocercidae</scientific_name>\r
2501                                       <rank>family</rank>\r
2502                                     </taxonomy>\r
2503                                     <clade>\r
2504                                       <taxonomy>\r
2505                                         <id provider="uniprot">6279</id>\r
2506                                         <code>BRUMA</code>\r
2507                                         <scientific_name>Brugia malayi</scientific_name>\r
2508                                         <common_name>Filarial nematode worm</common_name>\r
2509                                         <rank>species</rank>\r
2510                                         <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>\r
2511                                       </taxonomy>\r
2512                                     </clade>\r
2513                                     <clade>\r
2514                                       <taxonomy>\r
2515                                         <id provider="uniprot">6293</id>\r
2516                                         <code>WUCBA</code>\r
2517                                         <scientific_name>Wuchereria bancrofti</scientific_name>\r
2518                                         <rank>species</rank>\r
2519                                         <uri>http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG</uri>\r
2520                                       </taxonomy>\r
2521                                       <sequence>\r
2522                                       </sequence>\r
2523                                     </clade>\r
2524                                   </clade>\r
2525                                   <clade>\r
2526                                     <taxonomy>\r
2527                                       <id provider="uniprot">6253</id>\r
2528                                       <code>ASCSU</code>\r
2529                                       <scientific_name>Ascaris suum</scientific_name>\r
2530                                       <common_name>Pig roundworm</common_name>\r
2531                                       <synonym>Ascaris lumbricoides</synonym>\r
2532                                       <rank>species</rank>\r
2533                                     </taxonomy>\r
2534                                   </clade>\r
2535                                 </clade>\r
2536                               </clade>\r
2537                               <clade>\r
2538                                 <taxonomy>\r
2539                                   <id provider="uniprot">119088</id>\r
2540                                   <scientific_name>Enoplea</scientific_name>\r
2541                                   <rank>class</rank>\r
2542                                 </taxonomy>\r
2543                                 <clade>\r
2544                                   <taxonomy>\r
2545                                     <id provider="uniprot">6334</id>\r
2546                                     <code>TRISP</code>\r
2547                                     <scientific_name>Trichinella spiralis</scientific_name>\r
2548                                     <common_name>Trichina worm</common_name>\r
2549                                     <rank>species</rank>\r
2550                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG</uri>\r
2551                                   </taxonomy>\r
2552                                 </clade>\r
2553                                 <clade>\r
2554                                   <taxonomy>\r
2555                                     <id provider="uniprot">319952</id>\r
2556                                     <scientific_name>Enoplus communis</scientific_name>\r
2557                                     <rank>species</rank>\r
2558                                   </taxonomy>\r
2559                                 </clade>\r
2560                               </clade>\r
2561                             </clade>\r
2562                           </clade>\r
2563                           <clade>\r
2564                             <taxonomy>\r
2565                               <id provider="uniprot">1206795</id>\r
2566                               <scientific_name>Lophotrochozoa</scientific_name>\r
2567                             </taxonomy>\r
2568                             <clade>\r
2569                               <name>Annelida &amp; Mollusca</name>\r
2570                               <clade>\r
2571                                 <taxonomy>\r
2572                                   <id provider="uniprot">6447</id>\r
2573                                   <scientific_name>Mollusca</scientific_name>\r
2574                                   <rank>phylum</rank>\r
2575                                 </taxonomy>\r
2576                                 <clade>\r
2577                                   <taxonomy>\r
2578                                     <id provider="uniprot">6448</id>\r
2579                                     <scientific_name>Gastropoda</scientific_name>\r
2580                                     <rank>class</rank>\r
2581                                   </taxonomy>\r
2582                                   <clade>\r
2583                                     <taxonomy>\r
2584                                       <id provider="uniprot">6500</id>\r
2585                                       <code>APLCA</code>\r
2586                                       <scientific_name>Aplysia californica</scientific_name>\r
2587                                       <common_name>California sea hare</common_name>\r
2588                                       <rank>species</rank>\r
2589                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>\r
2590                                     </taxonomy>\r
2591                                   </clade>\r
2592                                   <clade>\r
2593                                     <taxonomy>\r
2594                                       <id provider="uniprot">225164</id>\r
2595                                       <code>LOTGI</code>\r
2596                                       <scientific_name>Lottia gigantea</scientific_name>\r
2597                                       <common_name>Owl limpet</common_name>\r
2598                                       <rank>species</rank>\r
2599                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>\r
2600                                     </taxonomy>\r
2601                                   </clade>\r
2602                                 </clade>\r
2603                                 <clade>\r
2604                                   <taxonomy>\r
2605                                     <id provider="uniprot">6545</id>\r
2606                                     <scientific_name>Pteriomorphia</scientific_name>\r
2607                                     <synonym>Pteriomorpha</synonym>\r
2608                                     <rank>subclass</rank>\r
2609                                   </taxonomy>\r
2610                                   <clade>\r
2611                                     <taxonomy>\r
2612                                       <id provider="uniprot">29159</id>\r
2613                                       <code>CRAGI</code>\r
2614                                       <scientific_name>Crassostrea gigas</scientific_name>\r
2615                                       <authority>Thunberg, 1793</authority>\r
2616                                       <common_name>Pacific oyster</common_name>\r
2617                                       <synonym>Crassotrea gigas</synonym>\r
2618                                       <synonym>Crassostrea angulata</synonym>\r
2619                                       <synonym>Ostrea gigas</synonym>\r
2620                                       <rank>species</rank>\r
2621                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>\r
2622                                     </taxonomy>\r
2623                                   </clade>\r
2624                                   <clade>\r
2625                                     <taxonomy>\r
2626                                       <id provider="uniprot">50426</id>\r
2627                                       <code>PINFU</code>\r
2628                                       <scientific_name>Pinctada fucata</scientific_name>\r
2629                                       <common_name>Pearl oyster</common_name>\r
2630                                       <rank>species</rank>\r
2631                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>\r
2632                                     </taxonomy>\r
2633                                   </clade>\r
2634                                 </clade>\r
2635                               </clade>\r
2636                               <clade>\r
2637                                 <taxonomy>\r
2638                                   <id provider="uniprot">6340</id>\r
2639                                   <scientific_name>Annelida</scientific_name>\r
2640                                   <rank>phylum</rank>\r
2641                                 </taxonomy>\r
2642                                 <clade>\r
2643                                   <taxonomy>\r
2644                                     <id provider="uniprot">283909</id>\r
2645                                     <code>CAPTE</code>\r
2646                                     <scientific_name>Capitella teleta</scientific_name>\r
2647                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>\r
2648                                     <common_name>Polychaete worm</common_name>\r
2649                                     <synonym>Capitella sp. I</synonym>\r
2650                                     <rank>species</rank>\r
2651                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>\r
2652                                   </taxonomy>\r
2653                                 </clade>\r
2654                                 <clade>\r
2655                                   <taxonomy>\r
2656                                     <id provider="uniprot">6412</id>\r
2657                                     <code>HELRO</code>\r
2658                                     <scientific_name>Helobdella robusta</scientific_name>\r
2659                                     <common_name>Californian leech</common_name>\r
2660                                     <rank>species</rank>\r
2661                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>\r
2662                                   </taxonomy>\r
2663                                 </clade>\r
2664                               </clade>\r
2665                             </clade>\r
2666                             <clade>\r
2667                               <taxonomy>\r
2668                                 <id provider="uniprot">6157</id>\r
2669                                 <scientific_name>Platyhelminthes</scientific_name>\r
2670                                 <rank>phylum</rank>\r
2671                               </taxonomy>\r
2672                               <clade>\r
2673                                 <taxonomy>\r
2674                                   <scientific_name>Neodermata</scientific_name>\r
2675                                 </taxonomy>\r
2676                                 <clade>\r
2677                                   <taxonomy>\r
2678                                     <id provider="uniprot">6179</id>\r
2679                                     <scientific_name>Digenea</scientific_name>\r
2680                                     <common_name>flukes</common_name>\r
2681                                     <rank>subclass</rank>\r
2682                                   </taxonomy>\r
2683                                   <clade>\r
2684                                     <taxonomy>\r
2685                                       <id provider="uniprot">6183</id>\r
2686                                       <code>SCHMA</code>\r
2687                                       <scientific_name>Schistosoma mansoni</scientific_name>\r
2688                                       <common_name>Blood fluke</common_name>\r
2689                                       <rank>species</rank>\r
2690                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>\r
2691                                     </taxonomy>\r
2692                                   </clade>\r
2693                                   <clade>\r
2694                                     <taxonomy>\r
2695                                       <id provider="uniprot">79923</id>\r
2696                                       <code>CLOSI</code>\r
2697                                       <scientific_name>Clonorchis sinensi</scientific_name>\r
2698                                       <authority>Cobbold, 1875</authority>\r
2699                                       <common_name>Chinese liver fluke</common_name>\r
2700                                       <rank>species</rank>\r
2701                                       <uri>http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg</uri>\r
2702                                     </taxonomy>\r
2703                                   </clade>\r
2704                                 </clade>\r
2705                                 <clade>\r
2706                                   <taxonomy>\r
2707                                     <id provider="uniprot">6201</id>\r
2708                                     <scientific_name>Cyclophyllidea</scientific_name>\r
2709                                     <rank>order</rank>\r
2710                                   </taxonomy>\r
2711                                   <clade>\r
2712                                     <taxonomy>\r
2713                                       <id provider="uniprot">6211</id>\r
2714                                       <code>ECHMU</code>\r
2715                                       <scientific_name>Echinococcus multilocularis</scientific_name>\r
2716                                       <common_name>Fox tapeworm</common_name>\r
2717                                       <rank>species</rank>\r
2718                                       <uri>http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg</uri>\r
2719                                     </taxonomy>\r
2720                                   </clade>\r
2721                                   <clade>\r
2722                                     <taxonomy>\r
2723                                       <id provider="uniprot">85433</id>\r
2724                                       <code>HYMMI</code>\r
2725                                       <scientific_name>Hymenolepis microstoma</scientific_name>\r
2726                                       <common_name>Rodent tapeworm</common_name>\r
2727                                       <synonym>Rodentolepis microstoma</synonym>\r
2728                                       <rank>species</rank>\r
2729                                     </taxonomy>\r
2730                                   </clade>\r
2731                                 </clade>\r
2732                               </clade>\r
2733                               <clade>\r
2734                                 <taxonomy>\r
2735                                   <id provider="uniprot">79327</id>\r
2736                                   <code>SCHMD</code>\r
2737                                   <scientific_name>Schmidtea mediterranea</scientific_name>\r
2738                                   <common_name>Freshwater planarian flatworm</common_name>\r
2739                                   <rank>species</rank>\r
2740                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>\r
2741                                 </taxonomy>\r
2742                               </clade>\r
2743                             </clade>\r
2744                           </clade>\r
2745                         </clade>\r
2746                       </clade>\r
2747                       <clade>\r
2748                         <name>Cnidaria</name>\r
2749                         <taxonomy>\r
2750                           <id provider="uniprot">6073</id>\r
2751                           <scientific_name>Cnidaria</scientific_name>\r
2752                           <rank>phylum</rank>\r
2753                         </taxonomy>\r
2754                         <clade>\r
2755                           <taxonomy>\r
2756                             <id provider="uniprot">6102</id>\r
2757                             <scientific_name>Hexacorallia</scientific_name>\r
2758                             <synonym>Ceriantipatharia</synonym>\r
2759                             <synonym>Zoantharia</synonym>\r
2760                             <rank>subclass</rank>\r
2761                           </taxonomy>\r
2762                           <clade>\r
2763                             <taxonomy>\r
2764                               <id provider="uniprot">70779</id>\r
2765                               <code>ACRDI</code>\r
2766                               <scientific_name>Acropora digitifera</scientific_name>\r
2767                               <common_name>Staghorn coral</common_name>\r
2768                               <rank>species</rank>\r
2769                               <uri>http://mygenomix.files.wordpress.com/2011/07/sn-coral.jpg</uri>\r
2770                             </taxonomy>\r
2771                           </clade>\r
2772                           <clade>\r
2773                             <taxonomy>\r
2774                               <id provider="uniprot">45351</id>\r
2775                               <code>NEMVE</code>\r
2776                               <scientific_name>Nematostella vectensis</scientific_name>\r
2777                               <common_name>Starlet sea anemone</common_name>\r
2778                               <rank>species</rank>\r
2779                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>\r
2780                             </taxonomy>\r
2781                           </clade>\r
2782                         </clade>\r
2783                         <clade>\r
2784                           <taxonomy>\r
2785                             <id provider="uniprot">6087</id>\r
2786                             <code>HYDVU</code>\r
2787                             <scientific_name>Hydra vulgaris</scientific_name>\r
2788                             <authority>Pallas, 1766</authority>\r
2789                             <common_name>Hydra</common_name>\r
2790                             <synonym>Hydra attenuata</synonym>\r
2791                             <synonym>Hydra magnipapillata</synonym>\r
2792                             <rank>species</rank>\r
2793                             <uri>http://www.nig.ac.jp/labs/OntoGen/A10.jpg</uri>\r
2794                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/15/Hydra_biology.jpg</uri>\r
2795                           </taxonomy>\r
2796                         </clade>\r
2797                       </clade>\r
2798                     </clade>\r
2799                     <clade>\r
2800                       <taxonomy>\r
2801                         <id provider="uniprot">10228</id>\r
2802                         <code>TRIAD</code>\r
2803                         <scientific_name>Trichoplax adhaerens</scientific_name>\r
2804                         <synonym>Trichoplax reptans</synonym>\r
2805                         <rank>species</rank>\r
2806                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>\r
2807                       </taxonomy>\r
2808                       <reference doi="10.1073/pnas.0602076103">\r
2809                       </reference>\r
2810                     </clade>\r
2811                   </clade>\r
2812                   <clade>\r
2813                     <taxonomy>\r
2814                       <id provider="uniprot">27923</id>\r
2815                       <code>MNELE</code>\r
2816                       <scientific_name>Mnemiopsis leidyi</scientific_name>\r
2817                       <authority>A. gassiz, 1865</authority>\r
2818                       <common_name>Sea walnut</common_name>\r
2819                       <synonym>Warty comb jellyfish</synonym>\r
2820                       <rank>species</rank>\r
2821                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>\r
2822                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>\r
2823                     </taxonomy>\r
2824                   </clade>\r
2825                   <clade>\r
2826                     <taxonomy>\r
2827                       <id provider="uniprot">400682</id>\r
2828                       <code>AMPQE</code>\r
2829                       <scientific_name>Amphimedon queenslandica</scientific_name>\r
2830                       <authority>Hooper &amp; Van Soest, 2006</authority>\r
2831                       <common_name>Sponge</common_name>\r
2832                       <synonym>Reniera sp. JGI-2005</synonym>\r
2833                       <rank>species</rank>\r
2834                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>\r
2835                     </taxonomy>\r
2836                   </clade>\r
2837                 </clade>\r
2838                 <clade>\r
2839                   <taxonomy>\r
2840                     <id provider="uniprot">81524</id>\r
2841                     <scientific_name>Codonosigidae</scientific_name>\r
2842                     <rank>family</rank>\r
2843                   </taxonomy>\r
2844                   <clade>\r
2845                     <taxonomy>\r
2846                       <id provider="uniprot">81824</id>\r
2847                       <code>MONBE</code>\r
2848                       <scientific_name>Monosiga brevicollis</scientific_name>\r
2849                       <common_name>Choanoflagellate</common_name>\r
2850                       <rank>species</rank>\r
2851                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>\r
2852                     </taxonomy>\r
2853                   </clade>\r
2854                   <clade>\r
2855                     <taxonomy>\r
2856                       <id provider="uniprot">946362</id>\r
2857                       <code>SALS5</code>\r
2858                       <scientific_name>Salpingoeca rosetta</scientific_name>\r
2859                       <synonym>Proterospongia sp. ATCC 50818</synonym>\r
2860                       <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
2861                       <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>\r
2862                       <rank>species</rank>\r
2863                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>\r
2864                     </taxonomy>\r
2865                   </clade>\r
2866                 </clade>\r
2867               </clade>\r
2868               <clade>\r
2869                 <name>Ichthyophonida &amp; Filasterea</name>\r
2870                 <clade>\r
2871                   <taxonomy>\r
2872                     <id provider="uniprot">198625</id>\r
2873                     <scientific_name>Ichthyophonida</scientific_name>\r
2874                     <rank>order</rank>\r
2875                   </taxonomy>\r
2876                   <clade>\r
2877                     <taxonomy>\r
2878                       <id provider="uniprot">4881</id>\r
2879                       <code>AMOPA</code>\r
2880                       <scientific_name>Amoebidium parasiticum</scientific_name>\r
2881                       <rank>species</rank>\r
2882                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>\r
2883                     </taxonomy>\r
2884                   </clade>\r
2885                   <clade>\r
2886                     <taxonomy>\r
2887                       <id provider="uniprot">72019</id>\r
2888                       <code>SARXX</code>\r
2889                       <scientific_name>Sphaeroforma arctica</scientific_name>\r
2890                       <rank>species</rank>\r
2891                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
2892                     </taxonomy>\r
2893                   </clade>\r
2894                 </clade>\r
2895                 <clade>\r
2896                   <taxonomy>\r
2897                     <scientific_name>Filasterea</scientific_name>\r
2898                   </taxonomy>\r
2899                   <reference doi="10.1371/journal.pone.0002098">\r
2900                   </reference>\r
2901                   <reference>\r
2902                   </reference>\r
2903                   <clade>\r
2904                     <taxonomy>\r
2905                       <id provider="uniprot">595528</id>\r
2906                       <code>CAPO3</code>\r
2907                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>\r
2908                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>\r
2909                     </taxonomy>\r
2910                   </clade>\r
2911                   <clade>\r
2912                     <taxonomy>\r
2913                       <id provider="uniprot">134558</id>\r
2914                       <scientific_name>Ministeria vibrans</scientific_name>\r
2915                       <rank>species</rank>\r
2916                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>\r
2917                     </taxonomy>\r
2918                   </clade>\r
2919                 </clade>\r
2920               </clade>\r
2921             </clade>\r
2922             <clade>\r
2923               <taxonomy>\r
2924                 <scientific_name>Holomycota</scientific_name>\r
2925                 <synonym>Nucletmycea</synonym>\r
2926               </taxonomy>\r
2927               <reference doi="10.1186/1471-2148-9-272">\r
2928                 <desc>Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support</desc>\r
2929               </reference>\r
2930               <clade>\r
2931                 <taxonomy>\r
2932                   <id provider="uniprot">4751</id>\r
2933                   <scientific_name>Fungi</scientific_name>\r
2934                   <rank>kingdom</rank>\r
2935                 </taxonomy>\r
2936                 <reference doi="10.1186/1741-7007-10-47">\r
2937                   <desc>Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi</desc>\r
2938                 </reference>\r
2939                 <clade>\r
2940                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
2941                   <clade>\r
2942                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
2943                     <clade>\r
2944                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
2945                       <clade>\r
2946                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
2947                         <clade>\r
2948                           <name>Dikarya &amp; Mucoromycotina</name>\r
2949                           <clade>\r
2950                             <name>Glomeromycota + Dikarya</name>\r
2951                             <clade>\r
2952                               <taxonomy>\r
2953                                 <id provider="uniprot">451864</id>\r
2954                                 <scientific_name>Dikarya</scientific_name>\r
2955                                 <rank>subkingdom</rank>\r
2956                               </taxonomy>\r
2957                               <reference doi="10.1038/nature05110">\r
2958                               </reference>\r
2959                               <reference>\r
2960                               </reference>\r
2961                               <clade>\r
2962                                 <taxonomy>\r
2963                                   <id provider="uniprot">4890</id>\r
2964                                   <scientific_name>Ascomycota</scientific_name>\r
2965                                   <rank>phylum</rank>\r
2966                                 </taxonomy>\r
2967                                 <clade>\r
2968                                   <name>Pezizomycotina &amp; Saccharomycetales</name>\r
2969                                   <clade>\r
2970                                     <taxonomy>\r
2971                                       <id provider="uniprot">147538</id>\r
2972                                       <scientific_name>Pezizomycotina</scientific_name>\r
2973                                       <synonym>Euascomycota</synonym>\r
2974                                       <rank>subphylum</rank>\r
2975                                     </taxonomy>\r
2976                                     <reference doi="0.3852/mycologia.98.6.1018">\r
2977                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
2978                                     </reference>\r
2979                                     <reference>\r
2980                                     </reference>\r
2981                                     <clade>\r
2982                                       <taxonomy>\r
2983                                         <id provider="uniprot">716546</id>\r
2984                                         <scientific_name>Leotiomyceta</scientific_name>\r
2985                                       </taxonomy>\r
2986                                       <clade>\r
2987                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
2988                                         <clade>\r
2989                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
2990                                           <clade>\r
2991                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
2992                                             <clade>\r
2993                                               <taxonomy>\r
2994                                                 <id provider="uniprot">715989</id>\r
2995                                                 <scientific_name>Sordariomyceta</scientific_name>\r
2996                                               </taxonomy>\r
2997                                               <clade>\r
2998                                                 <taxonomy>\r
2999                                                   <id provider="uniprot">147550</id>\r
3000                                                   <scientific_name>Sordariomycetes</scientific_name>\r
3001                                                   <rank>class</rank>\r
3002                                                 </taxonomy>\r
3003                                                 <clade>\r
3004                                                   <name>Magnaporthales &amp; Hypocreales</name>\r
3005                                                   <clade>\r
3006                                                     <taxonomy>\r
3007                                                       <id provider="uniprot">5125</id>\r
3008                                                       <scientific_name>Hypocreales</scientific_name>\r
3009                                                       <rank>order</rank>\r
3010                                                     </taxonomy>\r
3011                                                     <clade>\r
3012                                                       <taxonomy>\r
3013                                                         <id provider="uniprot">398408</id>\r
3014                                                         <code>AALXX</code>\r
3015                                                         <scientific_name>Acremonium alcalophilum</scientific_name>\r
3016                                                         <rank>species</rank>\r
3017                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
3018                                                       </taxonomy>\r
3019                                                     </clade>\r
3020                                                     <clade>\r
3021                                                       <taxonomy>\r
3022                                                         <id provider="uniprot">229533</id>\r
3023                                                         <code>GIBZE</code>\r
3024                                                         <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>\r
3025                                                         <common_name>Wheat head blight fungus</common_name>\r
3026                                                         <synonym>Fusarium graminearum</synonym>\r
3027                                                         <synonym>Gibberella zeae PH-1</synonym>\r
3028                                                         <rank>strain</rank>\r
3029                                                         <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>\r
3030                                                       </taxonomy>\r
3031                                                     </clade>\r
3032                                                     <clade>\r
3033                                                       <taxonomy>\r
3034                                                         <id provider="uniprot">413071</id>\r
3035                                                         <code>HYPVG</code>\r
3036                                                         <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>\r
3037                                                         <common_name>Gliocladium virens</common_name>\r
3038                                                         <synonym>Trichoderma virens</synonym>\r
3039                                                         <synonym>Gliocladium flavofuscum</synonym>\r
3040                                                         <synonym>Trichoderma virens Gv29-8</synonym>\r
3041                                                         <synonym>Gliocladium virens</synonym>\r
3042                                                         <rank>strain</rank>\r
3043                                                         <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>\r
3044                                                       </taxonomy>\r
3045                                                     </clade>\r
3046                                                   </clade>\r
3047                                                   <clade>\r
3048                                                     <taxonomy>\r
3049                                                       <id provider="uniprot">148305</id>\r
3050                                                       <code>MAGGR</code>\r
3051                                                       <scientific_name>Magnaporthe grisea</scientific_name>\r
3052                                                       <common_name>Rice blast fungus</common_name>\r
3053                                                       <synonym>Pyricularia grisea</synonym>\r
3054                                                       <rank>species</rank>\r
3055                                                       <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>\r
3056                                                     </taxonomy>\r
3057                                                   </clade>\r
3058                                                 </clade>\r
3059                                                 <clade>\r
3060                                                   <taxonomy>\r
3061                                                     <id provider="uniprot">5139</id>\r
3062                                                     <scientific_name>Sordariales</scientific_name>\r
3063                                                     <rank>order</rank>\r
3064                                                   </taxonomy>\r
3065                                                   <clade>\r
3066                                                     <taxonomy>\r
3067                                                       <id provider="uniprot">35718</id>\r
3068                                                       <scientific_name>Chaetomiaceae</scientific_name>\r
3069                                                       <rank>family</rank>\r
3070                                                     </taxonomy>\r
3071                                                     <clade>\r
3072                                                       <taxonomy>\r
3073                                                         <id provider="uniprot">35719</id>\r
3074                                                         <scientific_name>Thielavia</scientific_name>\r
3075                                                         <rank>genus</rank>\r
3076                                                       </taxonomy>\r
3077                                                       <clade>\r
3078                                                         <taxonomy>\r
3079                                                           <id provider="uniprot">573729</id>\r
3080                                                           <code>THIHA</code>\r
3081                                                           <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>\r
3082                                                           <authority>(Apinis) Oorschot 1977</authority>\r
3083                                                           <synonym>Sporotrichum thermophilum</synonym>\r
3084                                                           <synonym>Myceliophthora thermophila</synonym>\r
3085                                                           <rank>species</rank>\r
3086                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
3087                                                         </taxonomy>\r
3088                                                       </clade>\r
3089                                                       <clade>\r
3090                                                         <taxonomy>\r
3091                                                           <id provider="uniprot">578455</id>\r
3092                                                           <code>THITE</code>\r
3093                                                           <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>\r
3094                                                           <synonym>Acremonium alabamense</synonym>\r
3095                                                           <synonym>Thielavia terrestris NRRL 8126</synonym>\r
3096                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
3097                                                         </taxonomy>\r
3098                                                       </clade>\r
3099                                                     </clade>\r
3100                                                     <clade>\r
3101                                                       <taxonomy>\r
3102                                                         <id provider="uniprot">306901</id>\r
3103                                                         <code>CHAGB</code>\r
3104                                                         <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>\r
3105                                                         <authority>Kunze 1817</authority>\r
3106                                                         <common_name>Soil fungus</common_name>\r
3107                                                         <rank>strain</rank>\r
3108                                                       </taxonomy>\r
3109                                                     </clade>\r
3110                                                   </clade>\r
3111                                                   <clade>\r
3112                                                     <taxonomy>\r
3113                                                       <id provider="uniprot">367110</id>\r
3114                                                       <code>NEUCR</code>\r
3115                                                       <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>\r
3116                                                       <rank>strain</rank>\r
3117                                                     </taxonomy>\r
3118                                                   </clade>\r
3119                                                 </clade>\r
3120                                               </clade>\r
3121                                               <clade>\r
3122                                                 <taxonomy>\r
3123                                                   <id provider="uniprot">147548</id>\r
3124                                                   <scientific_name>Leotiomycetes</scientific_name>\r
3125                                                   <rank>class</rank>\r
3126                                                 </taxonomy>\r
3127                                                 <clade>\r
3128                                                   <taxonomy>\r
3129                                                     <id provider="uniprot">28983</id>\r
3130                                                     <scientific_name>Sclerotiniaceae</scientific_name>\r
3131                                                     <rank>family</rank>\r
3132                                                   </taxonomy>\r
3133                                                   <clade>\r
3134                                                     <taxonomy>\r
3135                                                       <id provider="uniprot">999810</id>\r
3136                                                       <code>BOTF4</code>\r
3137                                                       <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>\r
3138                                                       <common_name>Noble rot fungus</common_name>\r
3139                                                       <synonym>Botrytis cinerea</synonym>\r
3140                                                       <rank>strain</rank>\r
3141                                                     </taxonomy>\r
3142                                                   </clade>\r
3143                                                   <clade>\r
3144                                                     <taxonomy>\r
3145                                                       <id provider="uniprot">665079</id>\r
3146                                                       <code>SCLS1</code>\r
3147                                                       <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>\r
3148                                                       <common_name>White mold</common_name>\r
3149                                                       <synonym>Whetzelinia sclerotiorum</synonym>\r
3150                                                       <rank>strain</rank>\r
3151                                                     </taxonomy>\r
3152                                                   </clade>\r
3153                                                 </clade>\r
3154                                                 <clade>\r
3155                                                   <taxonomy>\r
3156                                                     <id provider="uniprot">78148</id>\r
3157                                                     <scientific_name>Oidiodendron maius</scientific_name>\r
3158                                                     <rank>species</rank>\r
3159                                                   </taxonomy>\r
3160                                                 </clade>\r
3161                                               </clade>\r
3162                                             </clade>\r
3163                                             <clade>\r
3164                                               <taxonomy>\r
3165                                                 <id provider="uniprot">388435</id>\r
3166                                                 <scientific_name>Lecanoromycetidae</scientific_name>\r
3167                                                 <rank>subclass</rank>\r
3168                                               </taxonomy>\r
3169                                               <clade>\r
3170                                                 <taxonomy>\r
3171                                                   <id provider="uniprot">27339</id>\r
3172                                                   <scientific_name>Cladonia grayi</scientific_name>\r
3173                                                   <synonym>Cladonia grayi Merr</synonym>\r
3174                                                   <rank>species</rank>\r
3175                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
3176                                                 </taxonomy>\r
3177                                               </clade>\r
3178                                               <clade>\r
3179                                                 <taxonomy>\r
3180                                                   <id provider="uniprot">107463</id>\r
3181                                                   <scientific_name>Xanthoria parietina</scientific_name>\r
3182                                                   <rank>species</rank>\r
3183                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
3184                                                 </taxonomy>\r
3185                                               </clade>\r
3186                                             </clade>\r
3187                                           </clade>\r
3188                                           <clade>\r
3189                                             <taxonomy>\r
3190                                               <id provider="uniprot">147541</id>\r
3191                                               <scientific_name>Dothideomycetes</scientific_name>\r
3192                                               <common_name>bitunicate ascomycetes</common_name>\r
3193                                               <rank>class</rank>\r
3194                                             </taxonomy>\r
3195                                             <reference doi="10.3114/sim.2009.64.01">\r
3196                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
3197                                             </reference>\r
3198                                             <clade>\r
3199                                               <taxonomy>\r
3200                                                 <id provider="uniprot">451867</id>\r
3201                                                 <scientific_name>Dothideomycetidae</scientific_name>\r
3202                                                 <rank>subclass</rank>\r
3203                                               </taxonomy>\r
3204                                               <reference doi="10.3852/mycologia.98.6.1041">\r
3205                                                 <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>\r
3206                                               </reference>\r
3207                                               <reference>\r
3208                                               </reference>\r
3209                                               <reference>\r
3210                                               </reference>\r
3211                                               <clade>\r
3212                                                 <taxonomy>\r
3213                                                   <id provider="uniprot">134362</id>\r
3214                                                   <scientific_name>Capnodiales</scientific_name>\r
3215                                                   <rank>order</rank>\r
3216                                                 </taxonomy>\r
3217                                                 <clade>\r
3218                                                   <taxonomy>\r
3219                                                     <id provider="uniprot">41254</id>\r
3220                                                     <scientific_name>Mycosphaerella</scientific_name>\r
3221                                                     <rank>genus</rank>\r
3222                                                   </taxonomy>\r
3223                                                   <clade>\r
3224                                                     <taxonomy>\r
3225                                                       <id provider="uniprot">83344</id>\r
3226                                                       <code>PFIXX</code>\r
3227                                                       <scientific_name>Pseudocercospora fijiensis</scientific_name>\r
3228                                                       <synonym>Mycosphaerella fijiensis</synonym>\r
3229                                                       <rank>species</rank>\r
3230                                                     </taxonomy>\r
3231                                                   </clade>\r
3232                                                   <clade>\r
3233                                                     <taxonomy>\r
3234                                                       <id provider="uniprot">336722</id>\r
3235                                                       <code>MYCGM</code>\r
3236                                                       <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>\r
3237                                                       <common_name>Speckled leaf blotch fungus</common_name>\r
3238                                                       <synonym>Zymoseptoria tritici IPO323</synonym>\r
3239                                                       <synonym>Mycosphaerella graminicola IPO323</synonym>\r
3240                                                       <synonym>Septoria tritici</synonym>\r
3241                                                       <rank>strain</rank>\r
3242                                                     </taxonomy>\r
3243                                                   </clade>\r
3244                                                   <clade>\r
3245                                                     <taxonomy>\r
3246                                                       <id provider="uniprot">64363</id>\r
3247                                                       <code>MYCPJ</code>\r
3248                                                       <scientific_name>Mycosphaerella pini</scientific_name>\r
3249                                                       <common_name>Red band needle blight disease fungus</common_name>\r
3250                                                       <synonym>Dothistroma septosporum</synonym>\r
3251                                                       <synonym>Dothistroma pini</synonym>\r
3252                                                       <rank>species</rank>\r
3253                                                     </taxonomy>\r
3254                                                   </clade>\r
3255                                                   <clade>\r
3256                                                     <taxonomy>\r
3257                                                       <id provider="uniprot">692275</id>\r
3258                                                       <code>SPHMS</code>\r
3259                                                       <scientific_name>Sphaerulina musiva (strain SO2202)</scientific_name>\r
3260                                                       <common_name>Poplar stem canker fungus</common_name>\r
3261                                                       <synonym>Septoria musiva</synonym>\r
3262                                                       <synonym>Mycosphaerella populorum SO2202</synonym>\r
3263                                                       <synonym>Septoria musiva SO2202</synonym>\r
3264                                                       <synonym>Sphaerulina musiva SO2202</synonym>\r
3265                                                       <rank>strain</rank>\r
3266                                                       <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>\r
3267                                                     </taxonomy>\r
3268                                                   </clade>\r
3269                                                 </clade>\r
3270                                                 <clade>\r
3271                                                   <taxonomy>\r
3272                                                     <id provider="uniprot">430998</id>\r
3273                                                     <code>BCOXX</code>\r
3274                                                     <scientific_name>Baudoinia compniacensis</scientific_name>\r
3275                                                     <common_name>Angels&apos; Share fungus</common_name>\r
3276                                                     <synonym>Torula compniacensis</synonym>\r
3277                                                     <rank>species</rank>\r
3278                                                     <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>\r
3279                                                   </taxonomy>\r
3280                                                 </clade>\r
3281                                               </clade>\r
3282                                               <clade>\r
3283                                                 <taxonomy>\r
3284                                                   <id provider="uniprot">5580</id>\r
3285                                                   <code>AURPU</code>\r
3286                                                   <scientific_name>Aureobasidium pullulans</scientific_name>\r
3287                                                   <common_name>Black yeast</common_name>\r
3288                                                   <synonym>Pullularia pullulans</synonym>\r
3289                                                   <rank>species</rank>\r
3290                                                 </taxonomy>\r
3291                                                 <clade>\r
3292                                                   <taxonomy>\r
3293                                                     <id provider="uniprot">178873</id>\r
3294                                                     <code>APPXX</code>\r
3295                                                     <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>\r
3296                                                     <rank>varietas</rank>\r
3297                                                   </taxonomy>\r
3298                                                 </clade>\r
3299                                                 <clade>\r
3300                                                   <taxonomy>\r
3301                                                     <id provider="uniprot">46634</id>\r
3302                                                     <code>APMXX</code>\r
3303                                                     <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>\r
3304                                                     <rank>varietas</rank>\r
3305                                                     <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>\r
3306                                                   </taxonomy>\r
3307                                                 </clade>\r
3308                                                 <clade>\r
3309                                                   <taxonomy>\r
3310                                                     <id provider="uniprot">1042127</id>\r
3311                                                     <code>APSXX</code>\r
3312                                                     <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>\r
3313                                                     <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>\r
3314                                                     <rank>varietas</rank>\r
3315                                                   </taxonomy>\r
3316                                                 </clade>\r
3317                                               </clade>\r
3318                                             </clade>\r
3319                                             <clade>\r
3320                                               <taxonomy>\r
3321                                                 <id provider="uniprot">715340</id>\r
3322                                                 <scientific_name>Pleosporineae</scientific_name>\r
3323                                                 <rank>suborder</rank>\r
3324                                               </taxonomy>\r
3325                                               <clade>\r
3326                                                 <taxonomy>\r
3327                                                   <id provider="uniprot">28556</id>\r
3328                                                   <scientific_name>Pleosporaceae</scientific_name>\r
3329                                                   <rank>family</rank>\r
3330                                                 </taxonomy>\r
3331                                                 <clade>\r
3332                                                   <name>Cochliobolus &amp; Setosphaeria</name>\r
3333                                                   <clade>\r
3334                                                     <taxonomy>\r
3335                                                       <id provider="uniprot">45130</id>\r
3336                                                       <code>COCSA</code>\r
3337                                                       <scientific_name>Cochliobolus sativus</scientific_name>\r
3338                                                       <synonym>Bipolaris sorokiniana</synonym>\r
3339                                                       <rank>species</rank>\r
3340                                                       <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
3341                                                     </taxonomy>\r
3342                                                   </clade>\r
3343                                                   <clade>\r
3344                                                     <taxonomy>\r
3345                                                       <id provider="uniprot">93612</id>\r
3346                                                       <code>SETTU</code>\r
3347                                                       <scientific_name>Setosphaeria turcica</scientific_name>\r
3348                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
3349                                                       <common_name>Northern corn leaf blight disease fungus</common_name>\r
3350                                                       <synonym>Exserohilum turcicum</synonym>\r
3351                                                       <synonym>Helminthosporium turcicum</synonym>\r
3352                                                       <rank>species</rank>\r
3353                                                     </taxonomy>\r
3354                                                   </clade>\r
3355                                                 </clade>\r
3356                                                 <clade>\r
3357                                                   <taxonomy>\r
3358                                                     <id provider="uniprot">426418</id>\r
3359                                                     <code>PYRTR</code>\r
3360                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
3361                                                     <common_name>Wheat tan spot fungus</common_name>\r
3362                                                     <synonym>Drechslera tritici-repentis</synonym>\r
3363                                                     <rank>strain</rank>\r
3364                                                   </taxonomy>\r
3365                                                 </clade>\r
3366                                               </clade>\r
3367                                               <clade>\r
3368                                                 <taxonomy>\r
3369                                                   <id provider="uniprot">321614</id>\r
3370                                                   <code>PHANO</code>\r
3371                                                   <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>\r
3372                                                   <common_name>Glume blotch fungus</common_name>\r
3373                                                   <synonym>Septoria nodorum</synonym>\r
3374                                                   <rank>strain</rank>\r
3375                                                 </taxonomy>\r
3376                                               </clade>\r
3377                                             </clade>\r
3378                                           </clade>\r
3379                                         </clade>\r
3380                                         <clade>\r
3381                                           <taxonomy>\r
3382                                             <id provider="uniprot">28568</id>\r
3383                                             <scientific_name>Trichocomaceae</scientific_name>\r
3384                                             <rank>family</rank>\r
3385                                           </taxonomy>\r
3386                                           <clade>\r
3387                                             <taxonomy>\r
3388                                               <id provider="uniprot">5052</id>\r
3389                                               <scientific_name>Aspergillus</scientific_name>\r
3390                                               <rank>genus</rank>\r
3391                                             </taxonomy>\r
3392                                             <clade>\r
3393                                               <taxonomy>\r
3394                                                 <id provider="uniprot">332952</id>\r
3395                                                 <code>ASPFN</code>\r
3396                                                 <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>\r
3397                                                 <synonym>Aspergillus flavus NRRL3357</synonym>\r
3398                                                 <rank>strain</rank>\r
3399                                                 <uri>http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg</uri>\r
3400                                               </taxonomy>\r
3401                                             </clade>\r
3402                                             <clade>\r
3403                                               <taxonomy>\r
3404                                                 <id provider="uniprot">425011</id>\r
3405                                                 <code>ASPNC</code>\r
3406                                                 <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>\r
3407                                                 <synonym>Aspergillus niger CBS 513.88</synonym>\r
3408                                                 <rank>strain</rank>\r
3409                                                 <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>\r
3410                                               </taxonomy>\r
3411                                             </clade>\r
3412                                             <clade>\r
3413                                               <taxonomy>\r
3414                                                 <id provider="uniprot">344612</id>\r
3415                                                 <code>ASPCL</code>\r
3416                                                 <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>\r
3417                                                 <synonym>Aspergillus clavatus NRRL 1</synonym>\r
3418                                               </taxonomy>\r
3419                                             </clade>\r
3420                                           </clade>\r
3421                                           <clade>\r
3422                                             <name>Neosartorya &amp; Emericella</name>\r
3423                                             <clade>\r
3424                                               <taxonomy>\r
3425                                                 <id provider="uniprot">227321</id>\r
3426                                                 <code>EMENI</code>\r
3427                                                 <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>\r
3428                                                 <authority>Vuill. 1927</authority>\r
3429                                                 <synonym>Aspergillus nidulans</synonym>\r
3430                                                 <rank>strain</rank>\r
3431                                               </taxonomy>\r
3432                                             </clade>\r
3433                                             <clade>\r
3434                                               <taxonomy>\r
3435                                                 <id provider="uniprot">331117</id>\r
3436                                                 <code>NEOFI</code>\r
3437                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
3438                                                 <synonym>Aspergillus fischerianus</synonym>\r
3439                                                 <rank>strain</rank>\r
3440                                               </taxonomy>\r
3441                                             </clade>\r
3442                                           </clade>\r
3443                                         </clade>\r
3444                                       </clade>\r
3445                                       <clade>\r
3446                                         <taxonomy>\r
3447                                           <id provider="uniprot">33183</id>\r
3448                                           <scientific_name>Onygenales</scientific_name>\r
3449                                           <rank>order</rank>\r
3450                                         </taxonomy>\r
3451                                         <reference>\r
3452                                           <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>\r
3453                                         </reference>\r
3454                                         <reference>\r
3455                                         </reference>\r
3456                                         <clade>\r
3457                                           <name>mitosporic Onygenales &amp; Onygenaceae</name>\r
3458                                           <clade>\r
3459                                             <taxonomy>\r
3460                                               <id provider="uniprot">246410</id>\r
3461                                               <code>COCIM</code>\r
3462                                               <scientific_name>Coccidioides immitis (strain RS)</scientific_name>\r
3463                                               <common_name>Valley fever fungus</common_name>\r
3464                                               <synonym>Coccidioides immitis RS</synonym>\r
3465                                             </taxonomy>\r
3466                                           </clade>\r
3467                                           <clade>\r
3468                                             <taxonomy>\r
3469                                               <id provider="uniprot">336963</id>\r
3470                                               <code>UNCRE</code>\r
3471                                               <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
3472                                               <rank>strain</rank>\r
3473                                             </taxonomy>\r
3474                                           </clade>\r
3475                                         </clade>\r
3476                                         <clade>\r
3477                                           <taxonomy>\r
3478                                             <id provider="uniprot">447093</id>\r
3479                                             <code>AJECG</code>\r
3480                                             <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>\r
3481                                             <common_name>Darling&apos;s disease fungus</common_name>\r
3482                                             <synonym>Histoplasma capsulatum</synonym>\r
3483                                           </taxonomy>\r
3484                                         </clade>\r
3485                                       </clade>\r
3486                                     </clade>\r
3487                                     <clade>\r
3488                                       <taxonomy>\r
3489                                         <id provider="uniprot">656061</id>\r
3490                                         <code>TUBMM</code>\r
3491                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
3492                                         <common_name>Perigord black truffle</common_name>\r
3493                                         <synonym>Tuber melanosporum Mel28</synonym>\r
3494                                         <rank>strain</rank>\r
3495                                         <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>\r
3496                                       </taxonomy>\r
3497                                     </clade>\r
3498                                   </clade>\r
3499                                   <clade>\r
3500                                     <taxonomy>\r
3501                                       <id provider="uniprot">4892</id>\r
3502                                       <scientific_name>Saccharomycetales</scientific_name>\r
3503                                       <common_name>budding yeasts</common_name>\r
3504                                       <rank>order</rank>\r
3505                                     </taxonomy>\r
3506                                     <reference doi="10.1186/1471-2148-6-99">\r
3507                                       <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>\r
3508                                     </reference>\r
3509                                     <reference>\r
3510                                     </reference>\r
3511                                     <clade>\r
3512                                       <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>\r
3513                                       <clade>\r
3514                                         <taxonomy>\r
3515                                           <id provider="uniprot">4893</id>\r
3516                                           <scientific_name>Saccharomycetaceae</scientific_name>\r
3517                                           <rank>family</rank>\r
3518                                         </taxonomy>\r
3519                                         <clade>\r
3520                                           <name>Naumovozyma &amp; Saccharomyces</name>\r
3521                                           <clade>\r
3522                                             <taxonomy>\r
3523                                               <id provider="uniprot">1064592</id>\r
3524                                               <code>NAUCC</code>\r
3525                                               <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>\r
3526                                               <common_name>Yeast</common_name>\r
3527                                               <synonym>Saccharomyces castellii</synonym>\r
3528                                               <rank>strain</rank>\r
3529                                             </taxonomy>\r
3530                                           </clade>\r
3531                                           <clade>\r
3532                                             <taxonomy>\r
3533                                               <id provider="uniprot">559292</id>\r
3534                                               <code>YEAST</code>\r
3535                                               <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>\r
3536                                               <common_name>Baker&apos;s yeast</common_name>\r
3537                                               <rank>strain</rank>\r
3538                                             </taxonomy>\r
3539                                           </clade>\r
3540                                         </clade>\r
3541                                         <clade>\r
3542                                           <name>Eremothecium &amp; Kluyveromyces</name>\r
3543                                           <clade>\r
3544                                             <taxonomy>\r
3545                                               <id provider="uniprot">284590</id>\r
3546                                               <code>KLULA</code>\r
3547                                               <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>\r
3548                                               <common_name>Yeast</common_name>\r
3549                                               <synonym>Candida sphaerica</synonym>\r
3550                                               <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>\r
3551                                             </taxonomy>\r
3552                                           </clade>\r
3553                                           <clade>\r
3554                                             <taxonomy>\r
3555                                               <id provider="uniprot">284811</id>\r
3556                                               <code>ASHGO</code>\r
3557                                               <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>\r
3558                                               <common_name>Yeast</common_name>\r
3559                                               <synonym>Eremothecium gossypii</synonym>\r
3560                                             </taxonomy>\r
3561                                           </clade>\r
3562                                         </clade>\r
3563                                       </clade>\r
3564                                       <clade>\r
3565                                         <name>Debaryomyces &amp; Candida</name>\r
3566                                         <clade>\r
3567                                           <taxonomy>\r
3568                                             <id provider="uniprot">5475</id>\r
3569                                             <scientific_name>Candida</scientific_name>\r
3570                                             <synonym>Torulopsis</synonym>\r
3571                                             <rank>genus</rank>\r
3572                                           </taxonomy>\r
3573                                           <clade>\r
3574                                             <taxonomy>\r
3575                                               <id provider="uniprot">237561</id>\r
3576                                               <code>CANAL</code>\r
3577                                               <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>\r
3578                                               <common_name>Yeast</common_name>\r
3579                                               <rank>strain</rank>\r
3580                                             </taxonomy>\r
3581                                           </clade>\r
3582                                           <clade>\r
3583                                             <taxonomy>\r
3584                                               <id provider="uniprot">294747</id>\r
3585                                               <code>CANTT</code>\r
3586                                               <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>\r
3587                                               <common_name>Yeast</common_name>\r
3588                                               <rank>strain</rank>\r
3589                                             </taxonomy>\r
3590                                           </clade>\r
3591                                         </clade>\r
3592                                         <clade>\r
3593                                           <taxonomy>\r
3594                                             <id provider="uniprot">284592</id>\r
3595                                             <code>DEBHA</code>\r
3596                                             <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>\r
3597                                             <common_name>Yeast</common_name>\r
3598                                             <synonym>Torulaspora hansenii</synonym>\r
3599                                             <synonym>Debaryomyces hansenii CBS767</synonym>\r
3600                                           </taxonomy>\r
3601                                         </clade>\r
3602                                       </clade>\r
3603                                     </clade>\r
3604                                     <clade>\r
3605                                       <taxonomy>\r
3606                                         <id provider="uniprot">284591</id>\r
3607                                         <code>YARLI</code>\r
3608                                         <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>\r
3609                                         <common_name>Yeast</common_name>\r
3610                                         <synonym>Candida lipolytica</synonym>\r
3611                                         <rank>strain</rank>\r
3612                                       </taxonomy>\r
3613                                     </clade>\r
3614                                   </clade>\r
3615                                 </clade>\r
3616                                 <clade>\r
3617                                   <taxonomy>\r
3618                                     <id provider="uniprot">451866</id>\r
3619                                     <scientific_name>Taphrinomycotina</scientific_name>\r
3620                                     <rank>subphylum</rank>\r
3621                                   </taxonomy>\r
3622                                   <clade>\r
3623                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
3624                                     <clade>\r
3625                                       <taxonomy>\r
3626                                         <id provider="uniprot">4895</id>\r
3627                                         <scientific_name>Schizosaccharomyces</scientific_name>\r
3628                                         <rank>genus</rank>\r
3629                                       </taxonomy>\r
3630                                       <clade>\r
3631                                         <taxonomy>\r
3632                                           <id provider="uniprot">402676</id>\r
3633                                           <code>SCHJY</code>\r
3634                                           <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>\r
3635                                           <common_name>Fission yeast</common_name>\r
3636                                           <rank>strain</rank>\r
3637                                         </taxonomy>\r
3638                                       </clade>\r
3639                                       <clade>\r
3640                                         <taxonomy>\r
3641                                           <id provider="uniprot">4899</id>\r
3642                                           <code>SCHOT</code>\r
3643                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>\r
3644                                           <common_name>Fission yeast</common_name>\r
3645                                           <rank>species</rank>\r
3646                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>\r
3647                                         </taxonomy>\r
3648                                       </clade>\r
3649                                       <clade>\r
3650                                         <taxonomy>\r
3651                                           <id provider="uniprot">284812</id>\r
3652                                           <code>SCHPO</code>\r
3653                                           <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>\r
3654                                           <common_name>Fission yeast</common_name>\r
3655                                           <rank>strain</rank>\r
3656                                         </taxonomy>\r
3657                                       </clade>\r
3658                                     </clade>\r
3659                                     <clade>\r
3660                                       <taxonomy>\r
3661                                         <id provider="uniprot">4754</id>\r
3662                                         <code>PNECA</code>\r
3663                                         <scientific_name>Pneumocystis carinii</scientific_name>\r
3664                                         <rank>species</rank>\r
3665                                       </taxonomy>\r
3666                                     </clade>\r
3667                                   </clade>\r
3668                                   <clade>\r
3669                                     <taxonomy>\r
3670                                       <id provider="uniprot">5606</id>\r
3671                                       <scientific_name>Saitoella complicata</scientific_name>\r
3672                                       <rank>species</rank>\r
3673                                     </taxonomy>\r
3674                                   </clade>\r
3675                                 </clade>\r
3676                               </clade>\r
3677                               <clade>\r
3678                                 <taxonomy>\r
3679                                   <id provider="uniprot">5204</id>\r
3680                                   <scientific_name>Basidiomycota</scientific_name>\r
3681                                   <rank>phylum</rank>\r
3682                                 </taxonomy>\r
3683                                 <clade>\r
3684                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
3685                                   <clade>\r
3686                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
3687                                     <clade>\r
3688                                       <taxonomy>\r
3689                                         <id provider="uniprot">5302</id>\r
3690                                         <scientific_name>Agaricomycotina</scientific_name>\r
3691                                       </taxonomy>\r
3692                                       <clade>\r
3693                                         <taxonomy>\r
3694                                           <id provider="uniprot">155619</id>\r
3695                                           <scientific_name>Homobasidiomycetes</scientific_name>\r
3696                                           <rank>class</rank>\r
3697                                         </taxonomy>\r
3698                                         <reference doi="10.1098/rspb.2002.2123">\r
3699                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
3700                                         </reference>\r
3701                                         <clade>\r
3702                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
3703                                           <clade>\r
3704                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
3705                                             <clade>\r
3706                                               <taxonomy>\r
3707                                                 <id provider="uniprot">452333</id>\r
3708                                                 <scientific_name>Agaricomycetidae</scientific_name>\r
3709                                                 <rank>subclass</rank>\r
3710                                               </taxonomy>\r
3711                                               <clade>\r
3712                                                 <name>Agaricales &amp; Boletales</name>\r
3713                                                 <clade>\r
3714                                                   <taxonomy>\r
3715                                                     <id provider="uniprot">5338</id>\r
3716                                                     <scientific_name>Agaricales</scientific_name>\r
3717                                                     <rank>order</rank>\r
3718                                                   </taxonomy>\r
3719                                                   <clade>\r
3720                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
3721                                                     <clade>\r
3722                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
3723                                                       <clade>\r
3724                                                         <name>Agaricus &amp; Coprinopsis</name>\r
3725                                                         <clade>\r
3726                                                           <taxonomy>\r
3727                                                             <id provider="uniprot">597362</id>\r
3728                                                             <code>AGABU</code>\r
3729                                                             <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>\r
3730                                                             <common_name>White button mushroom</common_name>\r
3731                                                             <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>\r
3732                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
3733                                                           </taxonomy>\r
3734                                                         </clade>\r
3735                                                         <clade>\r
3736                                                           <taxonomy>\r
3737                                                             <id provider="uniprot">5346</id>\r
3738                                                             <code>COPC7</code>\r
3739                                                             <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>\r
3740                                                             <common_name>Inky cap fungus</common_name>\r
3741                                                             <synonym>Hormographiella aspergillata</synonym>\r
3742                                                             <rank>strain</rank>\r
3743                                                             <uri>http://www.pnas.org/content/107/26/cover-expansion.medium.gif</uri>\r
3744                                                           </taxonomy>\r
3745                                                         </clade>\r
3746                                                       </clade>\r
3747                                                       <clade>\r
3748                                                         <taxonomy>\r
3749                                                           <id provider="uniprot">486041</id>\r
3750                                                           <code>LACBS</code>\r
3751                                                           <scientific_name>Laccaria bicolor</scientific_name>\r
3752                                                           <common_name>Bicoloured deceiver</common_name>\r
3753                                                           <synonym>Laccaria laccata var. bicolor</synonym>\r
3754                                                           <synonym>Laccaria bicolor S238N-H82</synonym>\r
3755                                                           <rank>strain</rank>\r
3756                                                           <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>\r
3757                                                         </taxonomy>\r
3758                                                       </clade>\r
3759                                                     </clade>\r
3760                                                     <clade>\r
3761                                                       <taxonomy>\r
3762                                                         <id provider="uniprot">206324</id>\r
3763                                                         <scientific_name>Gymnopus luxurians</scientific_name>\r
3764                                                         <rank>species</rank>\r
3765                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
3766                                                       </taxonomy>\r
3767                                                     </clade>\r
3768                                                   </clade>\r
3769                                                   <clade>\r
3770                                                     <taxonomy>\r
3771                                                       <id provider="uniprot">5322</id>\r
3772                                                       <code>PLEOS</code>\r
3773                                                       <scientific_name>Pleurotus ostreatus</scientific_name>\r
3774                                                       <common_name>Oyster mushroom</common_name>\r
3775                                                       <synonym>White-rot fungus</synonym>\r
3776                                                       <rank>species</rank>\r
3777                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
3778                                                     </taxonomy>\r
3779                                                   </clade>\r
3780                                                 </clade>\r
3781                                                 <clade>\r
3782                                                   <taxonomy>\r
3783                                                     <id provider="uniprot">68889</id>\r
3784                                                     <scientific_name>Boletales</scientific_name>\r
3785                                                     <synonym>Melanogastrales</synonym>\r
3786                                                     <synonym>Sclerodermatales</synonym>\r
3787                                                     <rank>order</rank>\r
3788                                                   </taxonomy>\r
3789                                                   <clade>\r
3790                                                     <taxonomy>\r
3791                                                       <id provider="uniprot">227334</id>\r
3792                                                       <scientific_name>Coniophorineae</scientific_name>\r
3793                                                       <rank>suborder</rank>\r
3794                                                     </taxonomy>\r
3795                                                     <clade>\r
3796                                                       <taxonomy>\r
3797                                                         <id provider="uniprot">80637</id>\r
3798                                                         <code>CPUXX</code>\r
3799                                                         <scientific_name>Coniophora puteana</scientific_name>\r
3800                                                         <authority>Schum. ex Fries</authority>\r
3801                                                         <common_name>cellar fungus</common_name>\r
3802                                                         <rank>species</rank>\r
3803                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
3804                                                       </taxonomy>\r
3805                                                     </clade>\r
3806                                                     <clade>\r
3807                                                       <taxonomy>\r
3808                                                         <id provider="uniprot">578457</id>\r
3809                                                         <code>SERL9</code>\r
3810                                                         <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>\r
3811                                                         <common_name>Dry rot fungus</common_name>\r
3812                                                         <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>\r
3813                                                       </taxonomy>\r
3814                                                     </clade>\r
3815                                                   </clade>\r
3816                                                   <clade>\r
3817                                                     <taxonomy>\r
3818                                                       <id provider="uniprot">388859</id>\r
3819                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>\r
3820                                                       <common_name>Spiny dry rot fungus</common_name>\r
3821                                                       <rank>species</rank>\r
3822                                                       <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>\r
3823                                                     </taxonomy>\r
3824                                                   </clade>\r
3825                                                 </clade>\r
3826                                               </clade>\r
3827                                               <clade>\r
3828                                                 <taxonomy>\r
3829                                                   <id provider="uniprot">202697</id>\r
3830                                                   <code>JARXX</code>\r
3831                                                   <scientific_name>Jaapia argillacea</scientific_name>\r
3832                                                   <rank>species</rank>\r
3833                                                   <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>\r
3834                                                 </taxonomy>\r
3835                                               </clade>\r
3836                                             </clade>\r
3837                                             <clade>\r
3838                                               <taxonomy>\r
3839                                                 <id provider="uniprot">104355</id>\r
3840                                                 <code>GLOTR</code>\r
3841                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>\r
3842                                                 <common_name>Brown rot fungus</common_name>\r
3843                                                 <rank>species</rank>\r
3844                                                 <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>\r
3845                                               </taxonomy>\r
3846                                             </clade>\r
3847                                           </clade>\r
3848                                           <clade>\r
3849                                             <taxonomy>\r
3850                                               <id provider="uniprot">5303</id>\r
3851                                               <scientific_name>Aphyllophorales</scientific_name>\r
3852                                               <authority>Gäum. (1926)</authority>\r
3853                                               <common_name>Shelf Fungi</common_name>\r
3854                                               <synonym>Polyporales</synonym>\r
3855                                               <rank>order</rank>\r
3856                                             </taxonomy>\r
3857                                             <clade>\r
3858                                               <taxonomy>\r
3859                                                 <id provider="uniprot">83233</id>\r
3860                                                 <scientific_name>Coriolaceae</scientific_name>\r
3861                                                 <rank>family</rank>\r
3862                                               </taxonomy>\r
3863                                               <reference doi="10.1017/S1477200005001623">\r
3864                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
3865                                               </reference>\r
3866                                               <reference>\r
3867                                               </reference>\r
3868                                               <reference>\r
3869                                               </reference>\r
3870                                               <clade>\r
3871                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
3872                                                 <clade>\r
3873                                                   <name>Antrodia clade</name>\r
3874                                                   <taxonomy>\r
3875                                                     <common_name>Antrodia clade</common_name>\r
3876                                                   </taxonomy>\r
3877                                                   <clade>\r
3878                                                     <taxonomy>\r
3879                                                       <id provider="uniprot">40483</id>\r
3880                                                       <code>FPIXX</code>\r
3881                                                       <scientific_name>Fomitopsis pinicola</scientific_name>\r
3882                                                       <authority>(Swartz) P. Karsten</authority>\r
3883                                                       <common_name>Red banded polypore</common_name>\r
3884                                                       <synonym>Fomes pinicola</synonym>\r
3885                                                       <synonym>Boletus pinicola</synonym>\r
3886                                                       <rank>species</rank>\r
3887                                                       <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>\r
3888                                                     </taxonomy>\r
3889                                                   </clade>\r
3890                                                   <clade>\r
3891                                                     <taxonomy>\r
3892                                                       <id provider="uniprot">104341</id>\r
3893                                                       <code>PPLXX</code>\r
3894                                                       <scientific_name>Postia placenta</scientific_name>\r
3895                                                       <synonym>Rhodonia placenta</synonym>\r
3896                                                       <rank>species</rank>\r
3897                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
3898                                                     </taxonomy>\r
3899                                                   </clade>\r
3900                                                 </clade>\r
3901                                                 <clade>\r
3902                                                   <name>core polyporoid clade</name>\r
3903                                                   <taxonomy>\r
3904                                                     <common_name>core polyporoid clade</common_name>\r
3905                                                   </taxonomy>\r
3906                                                   <clade>\r
3907                                                     <taxonomy>\r
3908                                                       <id provider="uniprot">5325</id>\r
3909                                                       <code>TRAVE</code>\r
3910                                                       <scientific_name>Trametes versicolor</scientific_name>\r
3911                                                       <authority>(L.) Lloyd 1921</authority>\r
3912                                                       <common_name>White-rot fungus</common_name>\r
3913                                                       <synonym>Coriolus versicolor</synonym>\r
3914                                                       <synonym>Bjerkandera versicolor</synonym>\r
3915                                                       <rank>species</rank>\r
3916                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg</uri>\r
3917                                                     </taxonomy>\r
3918                                                   </clade>\r
3919                                                   <clade>\r
3920                                                     <taxonomy>\r
3921                                                       <id provider="uniprot">742152</id>\r
3922                                                       <code>WOLCO</code>\r
3923                                                       <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>\r
3924                                                       <common_name>Brown rot fungus</common_name>\r
3925                                                       <synonym>Wolfiporia cocos MD-104 SS10</synonym>\r
3926                                                       <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>\r
3927                                                     </taxonomy>\r
3928                                                   </clade>\r
3929                                                 </clade>\r
3930                                               </clade>\r
3931                                               <clade>\r
3932                                                 <taxonomy>\r
3933                                                   <id provider="uniprot">42742</id>\r
3934                                                   <code>CERSU</code>\r
3935                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
3936                                                   <rank>species</rank>\r
3937                                                 </taxonomy>\r
3938                                               </clade>\r
3939                                             </clade>\r
3940                                             <clade>\r
3941                                               <taxonomy>\r
3942                                                 <id provider="uniprot">732165</id>\r
3943                                                 <code>DICSQ</code>\r
3944                                                 <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>\r
3945                                                 <common_name>Western red white-rot fungus</common_name>\r
3946                                                 <synonym>Dichomitus squalens LYAD-421 SS1</synonym>\r
3947                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
3948                                               </taxonomy>\r
3949                                             </clade>\r
3950                                           </clade>\r
3951                                         </clade>\r
3952                                         <clade>\r
3953                                           <taxonomy>\r
3954                                             <id provider="uniprot">13563</id>\r
3955                                             <code>HETAN</code>\r
3956                                             <scientific_name>Heterobasidion annosum</scientific_name>\r
3957                                             <common_name>Root rot fungus</common_name>\r
3958                                             <rank>species</rank>\r
3959                                           </taxonomy>\r
3960                                         </clade>\r
3961                                       </clade>\r
3962                                       <clade>\r
3963                                         <taxonomy>\r
3964                                           <id provider="uniprot">5215</id>\r
3965                                           <scientific_name>Tremellaceae</scientific_name>\r
3966                                           <rank>family</rank>\r
3967                                         </taxonomy>\r
3968                                         <clade>\r
3969                                           <taxonomy>\r
3970                                             <id provider="uniprot">5207</id>\r
3971                                             <code>CRYNE</code>\r
3972                                             <scientific_name>Cryptococcus neoformans</scientific_name>\r
3973                                             <synonym>Filobasidiella neoformans</synonym>\r
3974                                             <rank>species</rank>\r
3975                                           </taxonomy>\r
3976                                         </clade>\r
3977                                         <clade>\r
3978                                           <taxonomy>\r
3979                                             <id provider="eol">1029985</id>\r
3980                                             <code>TREME</code>\r
3981                                             <scientific_name>Tremella mesenterica</scientific_name>\r
3982                                             <authority>Pers. 1800</authority>\r
3983                                             <common_name>Jelly fungus</common_name>\r
3984                                             <synonym>Yellow Brain</synonym>\r
3985                                             <synonym>Tremella lutescens</synonym>\r
3986                                             <rank>species</rank>\r
3987                                           </taxonomy>\r
3988                                         </clade>\r
3989                                       </clade>\r
3990                                     </clade>\r
3991                                     <clade>\r
3992                                       <taxonomy>\r
3993                                         <id provider="uniprot">452284</id>\r
3994                                         <scientific_name>Ustilaginomycotina</scientific_name>\r
3995                                         <rank>subphylum</rank>\r
3996                                       </taxonomy>\r
3997                                       <clade>\r
3998                                         <taxonomy>\r
3999                                           <id provider="uniprot">425265</id>\r
4000                                           <code>MALGO</code>\r
4001                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
4002                                           <common_name>Dandruff-associated fungus</common_name>\r
4003                                         </taxonomy>\r
4004                                       </clade>\r
4005                                       <clade>\r
4006                                         <taxonomy>\r
4007                                           <id provider="uniprot">237631</id>\r
4008                                           <code>USTMA</code>\r
4009                                           <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>\r
4010                                           <common_name>Corn smut fungus</common_name>\r
4011                                           <rank>species</rank>\r
4012                                         </taxonomy>\r
4013                                       </clade>\r
4014                                     </clade>\r
4015                                   </clade>\r
4016                                   <clade>\r
4017                                     <taxonomy>\r
4018                                       <id provider="uniprot">29000</id>\r
4019                                       <scientific_name>Pucciniomycotina</scientific_name>\r
4020                                       <rank>subphylum</rank>\r
4021                                     </taxonomy>\r
4022                                     <clade>\r
4023                                       <taxonomy>\r
4024                                         <id provider="uniprot">5258</id>\r
4025                                         <scientific_name>Pucciniales</scientific_name>\r
4026                                         <common_name>rusts</common_name>\r
4027                                         <rank>order</rank>\r
4028                                       </taxonomy>\r
4029                                       <clade>\r
4030                                         <taxonomy>\r
4031                                           <id provider="uniprot">747676</id>\r
4032                                           <code>MELLP</code>\r
4033                                           <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>\r
4034                                           <authority>Kleb. 1902</authority>\r
4035                                           <common_name>Poplar leaf rust fungus</common_name>\r
4036                                           <synonym>Melampsora larici-populina 98AG31</synonym>\r
4037                                           <synonym>Melampsora laricis-populina 98AG31</synonym>\r
4038                                           <rank>strain</rank>\r
4039                                         </taxonomy>\r
4040                                       </clade>\r
4041                                       <clade>\r
4042                                         <taxonomy>\r
4043                                           <id provider="uniprot">5297</id>\r
4044                                           <code>PUCGR</code>\r
4045                                           <scientific_name>Puccinia graminis</scientific_name>\r
4046                                           <authority>Pers. 1794</authority>\r
4047                                           <common_name>Black stem rust fungus</common_name>\r
4048                                           <rank>species</rank>\r
4049                                         </taxonomy>\r
4050                                       </clade>\r
4051                                     </clade>\r
4052                                     <clade>\r
4053                                       <taxonomy>\r
4054                                         <id provider="uniprot">89013</id>\r
4055                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
4056                                       </taxonomy>\r
4057                                       <clade>\r
4058                                         <taxonomy>\r
4059                                           <id provider="uniprot">29898</id>\r
4060                                           <code>RHOGR</code>\r
4061                                           <scientific_name>Rhodotorula graminis</scientific_name>\r
4062                                           <common_name>Yeast</common_name>\r
4063                                           <rank>species</rank>\r
4064                                         </taxonomy>\r
4065                                       </clade>\r
4066                                       <clade>\r
4067                                         <taxonomy>\r
4068                                           <id provider="uniprot">40563</id>\r
4069                                           <code>SPORO</code>\r
4070                                           <scientific_name>Sporobolomyces roseus</scientific_name>\r
4071                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
4072                                           <rank>species</rank>\r
4073                                         </taxonomy>\r
4074                                       </clade>\r
4075                                     </clade>\r
4076                                   </clade>\r
4077                                 </clade>\r
4078                                 <clade>\r
4079                                   <taxonomy>\r
4080                                     <id provider="uniprot">671144</id>\r
4081                                     <code>WALSC</code>\r
4082                                     <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>\r
4083                                     <rank>strain</rank>\r
4084                                   </taxonomy>\r
4085                                 </clade>\r
4086                               </clade>\r
4087                             </clade>\r
4088                             <clade>\r
4089                               <taxonomy>\r
4090                                 <id provider="uniprot">747089</id>\r
4091                                 <code>RHIID</code>\r
4092                                 <scientific_name>Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194)</scientific_name>\r
4093                                 <common_name>Arbuscular mycorrhizal fungus</common_name>\r
4094                                 <synonym>Glomus intraradices</synonym>\r
4095                                 <uri>http://www.i-beg.eu/images/BEG53.jpg</uri>\r
4096                               </taxonomy>\r
4097                             </clade>\r
4098                           </clade>\r
4099                           <clade>\r
4100                             <taxonomy>\r
4101                               <id provider="uniprot">451507</id>\r
4102                               <scientific_name>Mucoromycotina</scientific_name>\r
4103                               <rank>subphylum</rank>\r
4104                             </taxonomy>\r
4105                             <clade>\r
4106                               <taxonomy>\r
4107                                 <id provider="uniprot">4827</id>\r
4108                                 <scientific_name>Mucorales</scientific_name>\r
4109                                 <common_name>pin moulds</common_name>\r
4110                                 <rank>order</rank>\r
4111                               </taxonomy>\r
4112                               <clade>\r
4113                                 <taxonomy>\r
4114                                   <id provider="uniprot">1344963</id>\r
4115                                   <scientific_name>Mucorineae</scientific_name>\r
4116                                   <rank>suborder</rank>\r
4117                                 </taxonomy>\r
4118                                 <clade>\r
4119                                   <taxonomy>\r
4120                                     <id provider="uniprot">36080</id>\r
4121                                     <code>MUCCI</code>\r
4122                                     <scientific_name>Mucor circinelloides</scientific_name>\r
4123                                     <synonym>Mucor griseo-roseus</synonym>\r
4124                                     <rank>species</rank>\r
4125                                   </taxonomy>\r
4126                                 </clade>\r
4127                                 <clade>\r
4128                                   <taxonomy>\r
4129                                     <id provider="uniprot">64495</id>\r
4130                                     <code>RHIOR</code>\r
4131                                     <scientific_name>Rhizopus oryzae</scientific_name>\r
4132                                     <common_name>Mucormycosis agent</common_name>\r
4133                                     <synonym>Rhizopus delemar</synonym>\r
4134                                     <synonym>Rhizopus arrhizus var. delemar</synonym>\r
4135                                     <rank>species</rank>\r
4136                                   </taxonomy>\r
4137                                 </clade>\r
4138                               </clade>\r
4139                               <clade>\r
4140                                 <taxonomy>\r
4141                                   <id provider="uniprot">4837</id>\r
4142                                   <code>PHYBL</code>\r
4143                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>\r
4144                                   <rank>species</rank>\r
4145                                 </taxonomy>\r
4146                               </clade>\r
4147                               <clade>\r
4148                                 <taxonomy>\r
4149                                   <id provider="uniprot">246409</id>\r
4150                                   <code>RHIO9</code>\r
4151                                   <scientific_name>Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)</scientific_name>\r
4152                                   <common_name>Mucormycosis agent</common_name>\r
4153                                   <synonym>Rhizopus arrhizus var. delemar</synonym>\r
4154                                 </taxonomy>\r
4155                               </clade>\r
4156                             </clade>\r
4157                             <clade>\r
4158                               <taxonomy>\r
4159                                 <id provider="uniprot">1069443</id>\r
4160                                 <code>MVNXX</code>\r
4161                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>\r
4162                                 <rank>species</rank>\r
4163                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>\r
4164                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
4165                               </taxonomy>\r
4166                             </clade>\r
4167                           </clade>\r
4168                         </clade>\r
4169                         <clade>\r
4170                           <taxonomy>\r
4171                             <id provider="uniprot">61392</id>\r
4172                             <code>CREXX</code>\r
4173                             <scientific_name>Coemansia reversa</scientific_name>\r
4174                             <rank>species</rank>\r
4175                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>\r
4176                           </taxonomy>\r
4177                         </clade>\r
4178                       </clade>\r
4179                       <clade>\r
4180                         <taxonomy>\r
4181                           <id provider="uniprot">28583</id>\r
4182                           <code>ALLMA</code>\r
4183                           <scientific_name>Allomyces macrogynus</scientific_name>\r
4184                           <rank>species</rank>\r
4185                         </taxonomy>\r
4186                       </clade>\r
4187                     </clade>\r
4188                     <clade>\r
4189                       <taxonomy>\r
4190                         <id provider="uniprot">4761</id>\r
4191                         <scientific_name>Chytridiomycota</scientific_name>\r
4192                         <common_name>chytrids</common_name>\r
4193                         <synonym>Mastigomycotina</synonym>\r
4194                         <rank>phylum</rank>\r
4195                       </taxonomy>\r
4196                       <clade>\r
4197                         <taxonomy>\r
4198                           <id provider="uniprot">451435</id>\r
4199                           <scientific_name>Chytridiomycetes</scientific_name>\r
4200                           <rank>class</rank>\r
4201                         </taxonomy>\r
4202                         <clade>\r
4203                           <taxonomy>\r
4204                             <id provider="uniprot">684364</id>\r
4205                             <code>BATDJ</code>\r
4206                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>\r
4207                             <common_name>Frog chytrid fungus</common_name>\r
4208                             <rank>strain</rank>\r
4209                           </taxonomy>\r
4210                         </clade>\r
4211                         <clade>\r
4212                           <taxonomy>\r
4213                             <id provider="uniprot">109760</id>\r
4214                             <code>SPIPN</code>\r
4215                             <scientific_name>Spizellomyces punctatus</scientific_name>\r
4216                             <rank>species</rank>\r
4217                           </taxonomy>\r
4218                         </clade>\r
4219                       </clade>\r
4220                       <clade>\r
4221                         <taxonomy>\r
4222                           <id provider="uniprot">1123529</id>\r
4223                           <code>GONPR</code>\r
4224                           <scientific_name>Gonapodya prolifera</scientific_name>\r
4225                           <authority>A. Fisch. 1892</authority>\r
4226                           <common_name>Aquatic fungus</common_name>\r
4227                           <rank>species</rank>\r
4228                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
4229                         </taxonomy>\r
4230                       </clade>\r
4231                     </clade>\r
4232                   </clade>\r
4233                   <clade>\r
4234                     <taxonomy>\r
4235                       <id provider="uniprot">73868</id>\r
4236                       <code>PIRSE</code>\r
4237                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>\r
4238                       <rank>species</rank>\r
4239                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
4240                     </taxonomy>\r
4241                   </clade>\r
4242                 </clade>\r
4243                 <clade>\r
4244                   <taxonomy>\r
4245                     <id provider="uniprot">6029</id>\r
4246                     <scientific_name>Microsporidia</scientific_name>\r
4247                     <rank>phylum</rank>\r
4248                   </taxonomy>\r
4249                   <reference>\r
4250                     <desc>Disseminated Infection Caused by Novel Species of Microsporidium, Thailand</desc>\r
4251                   </reference>\r
4252                   <clade>\r
4253                     <taxonomy>\r
4254                       <id provider="uniprot">6032</id>\r
4255                       <scientific_name>Apansporoblastina</scientific_name>\r
4256                       <rank>suborder</rank>\r
4257                     </taxonomy>\r
4258                     <clade>\r
4259                       <taxonomy>\r
4260                         <id provider="uniprot">6033</id>\r
4261                         <scientific_name>Encephalitozoon</scientific_name>\r
4262                         <rank>genus</rank>\r
4263                       </taxonomy>\r
4264                       <clade>\r
4265                         <taxonomy>\r
4266                           <id provider="uniprot">284813</id>\r
4267                           <code>ENCCU</code>\r
4268                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>\r
4269                           <common_name>Microsporidian parasite</common_name>\r
4270                           <rank>strain</rank>\r
4271                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>\r
4272                         </taxonomy>\r
4273                       </clade>\r
4274                       <clade>\r
4275                         <taxonomy>\r
4276                           <id provider="uniprot">907965</id>\r
4277                           <code>ENCHA</code>\r
4278                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>\r
4279                           <common_name>Microsporidian parasite</common_name>\r
4280                           <rank>strain</rank>\r
4281                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>\r
4282                         </taxonomy>\r
4283                       </clade>\r
4284                     </clade>\r
4285                     <clade>\r
4286                       <name>Nosematidae &amp; Enterocytozoonidae</name>\r
4287                       <clade>\r
4288                         <taxonomy>\r
4289                           <id provider="uniprot">993615</id>\r
4290                           <code>VITCO</code>\r
4291                           <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>\r
4292                           <common_name>Microsporidian parasite</common_name>\r
4293                           <synonym>Nosema corneum</synonym>\r
4294                         </taxonomy>\r
4295                       </clade>\r
4296                       <clade>\r
4297                         <taxonomy>\r
4298                           <id provider="uniprot">481877</id>\r
4299                           <code>ENTBH</code>\r
4300                           <scientific_name>Enterocytozoon bieneusi (strain H348)</scientific_name>\r
4301                           <common_name>Microsporidian parasite</common_name>\r
4302                           <uri>http://www.biolib.cz/IMG/GAL/17310.jpg</uri>\r
4303                         </taxonomy>\r
4304                       </clade>\r
4305                     </clade>\r
4306                   </clade>\r
4307                   <clade>\r
4308                     <taxonomy>\r
4309                       <id provider="uniprot">35232</id>\r
4310                       <scientific_name>Pleistophoridae</scientific_name>\r
4311                       <rank>family</rank>\r
4312                     </taxonomy>\r
4313                     <clade>\r
4314                       <taxonomy>\r
4315                         <id provider="uniprot">72359</id>\r
4316                         <code>TRAHO</code>\r
4317                         <scientific_name>Trachipleistophora hominis</scientific_name>\r
4318                         <common_name>Microsporidian parasite</common_name>\r
4319                         <rank>species</rank>\r
4320                       </taxonomy>\r
4321                     </clade>\r
4322                     <clade>\r
4323                       <taxonomy>\r
4324                         <id provider="uniprot">948595</id>\r
4325                         <code>VAVCU</code>\r
4326                         <scientific_name>Vavraia culicis (isolate floridensis)</scientific_name>\r
4327                         <common_name>Microsporidian parasite</common_name>\r
4328                       </taxonomy>\r
4329                     </clade>\r
4330                   </clade>\r
4331                   <clade>\r
4332                     <taxonomy>\r
4333                       <id provider="uniprot">1003232</id>\r
4334                       <code>EDHAE</code>\r
4335                       <scientific_name>Edhazardia aedis (strain USNM 41457)</scientific_name>\r
4336                       <common_name>Microsporidian parasite</common_name>\r
4337                       <uri>http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg</uri>\r
4338                     </taxonomy>\r
4339                   </clade>\r
4340                 </clade>\r
4341               </clade>\r
4342               <clade>\r
4343                 <taxonomy>\r
4344                   <id provider="uniprot">1001604</id>\r
4345                   <scientific_name>Nucleariidae and Fonticula group</scientific_name>\r
4346                 </taxonomy>\r
4347                 <reference doi="10.1093/molbev/msp185">\r
4348                   <desc>Phylogeny of the ï¿½Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta</desc>\r
4349                 </reference>\r
4350                 <clade>\r
4351                   <taxonomy>\r
4352                     <id provider="uniprot">691883</id>\r
4353                     <code>FALXX</code>\r
4354                     <scientific_name>Fonticula alba</scientific_name>\r
4355                     <authority>Worley, Raper &amp; Hohl. 1979</authority>\r
4356                     <rank>species</rank>\r
4357                     <uri>http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif</uri>\r
4358                   </taxonomy>\r
4359                 </clade>\r
4360                 <clade>\r
4361                   <taxonomy>\r
4362                     <id provider="uniprot">154970</id>\r
4363                     <scientific_name>Nuclearia simplex</scientific_name>\r
4364                     <rank>species</rank>\r
4365                   </taxonomy>\r
4366                 </clade>\r
4367               </clade>\r
4368             </clade>\r
4369           </clade>\r
4370           <clade>\r
4371             <taxonomy>\r
4372               <id provider="uniprot">554915</id>\r
4373               <scientific_name>Amoebozoa</scientific_name>\r
4374             </taxonomy>\r
4375             <clade>\r
4376               <taxonomy>\r
4377                 <id provider="uniprot">33083</id>\r
4378                 <scientific_name>Dictyosteliida</scientific_name>\r
4379                 <common_name>dictyostelid cellular slime molds</common_name>\r
4380                 <rank>order</rank>\r
4381               </taxonomy>\r
4382               <clade>\r
4383                 <taxonomy>\r
4384                   <id provider="uniprot">5782</id>\r
4385                   <scientific_name>Dictyostelium</scientific_name>\r
4386                   <rank>genus</rank>\r
4387                 </taxonomy>\r
4388                 <reference doi="10.1186/1471-2148-11-84">\r
4389                   <desc>An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns</desc>\r
4390                 </reference>\r
4391                 <reference>\r
4392                 </reference>\r
4393                 <reference>\r
4394                 </reference>\r
4395                 <clade>\r
4396                   <name>group 4</name>\r
4397                   <clade>\r
4398                     <taxonomy>\r
4399                       <id provider="uniprot">44689</id>\r
4400                       <code>DICDI</code>\r
4401                       <scientific_name>Dictyostelium discoideum</scientific_name>\r
4402                       <common_name>Slime mold</common_name>\r
4403                       <rank>species</rank>\r
4404                       <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>\r
4405                     </taxonomy>\r
4406                   </clade>\r
4407                   <clade>\r
4408                     <taxonomy>\r
4409                       <id provider="uniprot">5786</id>\r
4410                       <code>DICPU</code>\r
4411                       <scientific_name>Dictyostelium purpureum</scientific_name>\r
4412                       <common_name>Slime mold</common_name>\r
4413                       <rank>species</rank>\r
4414                     </taxonomy>\r
4415                   </clade>\r
4416                 </clade>\r
4417                 <clade>\r
4418                   <taxonomy>\r
4419                     <id provider="uniprot">1054147</id>\r
4420                     <code>DICFS</code>\r
4421                     <scientific_name>Dictyostelium fasciculatum (strain SH3)</scientific_name>\r
4422                     <common_name>Slime mold</common_name>\r
4423                     <rank>strain</rank>\r
4424                   </taxonomy>\r
4425                 </clade>\r
4426               </clade>\r
4427               <clade>\r
4428                 <taxonomy>\r
4429                   <id provider="uniprot">13642</id>\r
4430                   <code>POLPA</code>\r
4431                   <scientific_name>Polysphondylium pallidum</scientific_name>\r
4432                   <common_name>Cellular slime mold</common_name>\r
4433                   <rank>species</rank>\r
4434                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>\r
4435                 </taxonomy>\r
4436               </clade>\r
4437             </clade>\r
4438             <clade>\r
4439               <taxonomy>\r
4440                 <id provider="uniprot">5758</id>\r
4441                 <scientific_name>Entamoeba</scientific_name>\r
4442                 <rank>genus</rank>\r
4443               </taxonomy>\r
4444               <clade>\r
4445                 <taxonomy>\r
4446                   <id provider="uniprot">5759</id>\r
4447                   <code>ENTHI</code>\r
4448                   <scientific_name>Entamoeba histolytica</scientific_name>\r
4449                   <rank>species</rank>\r
4450                   <uri>http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg</uri>\r
4451                 </taxonomy>\r
4452               </clade>\r
4453               <clade>\r
4454                 <taxonomy>\r
4455                   <id provider="uniprot">370354</id>\r
4456                   <code>ENTDS</code>\r
4457                   <scientific_name>Entamoeba dispar (strain ATCC PRA-260 / SAW760)</scientific_name>\r
4458                 </taxonomy>\r
4459               </clade>\r
4460             </clade>\r
4461           </clade>\r
4462         </clade>\r
4463         <clade>\r
4464           <name>Bikonta</name>\r
4465           <reference doi="10.1099/ijs.0.63216-0">\r
4466           </reference>\r
4467           <clade>\r
4468             <name>Plants+HC+SAR megagroup</name>\r
4469             <clade>\r
4470               <name>Plants+HC</name>\r
4471               <clade>\r
4472                 <name>Archaeplastida</name>\r
4473                 <clade>\r
4474                   <taxonomy>\r
4475                     <id provider="uniprot">33090</id>\r
4476                     <scientific_name>Viridiplantae</scientific_name>\r
4477                     <common_name>green plants</common_name>\r
4478                     <rank>kingdom</rank>\r
4479                   </taxonomy>\r
4480                   <clade>\r
4481                     <taxonomy>\r
4482                       <id provider="uniprot">3193</id>\r
4483                       <scientific_name>Embryophyta</scientific_name>\r
4484                     </taxonomy>\r
4485                     <clade>\r
4486                       <taxonomy>\r
4487                         <id provider="uniprot">58023</id>\r
4488                         <scientific_name>Tracheophyta</scientific_name>\r
4489                       </taxonomy>\r
4490                       <clade>\r
4491                         <taxonomy>\r
4492                           <id provider="uniprot">58024</id>\r
4493                           <scientific_name>Spermatophyta</scientific_name>\r
4494                         </taxonomy>\r
4495                         <clade>\r
4496                           <taxonomy>\r
4497                             <id provider="uniprot">3398</id>\r
4498                             <scientific_name>Magnoliophyta</scientific_name>\r
4499                           </taxonomy>\r
4500                           <clade>\r
4501                             <name>eudicotyledons &amp; Liliopsida</name>\r
4502                             <clade>\r
4503                               <taxonomy>\r
4504                                 <id provider="uniprot">71240</id>\r
4505                                 <scientific_name>eudicotyledons</scientific_name>\r
4506                               </taxonomy>\r
4507                               <clade>\r
4508                                 <taxonomy>\r
4509                                   <id provider="uniprot">91827</id>\r
4510                                   <scientific_name>core eudicotyledons</scientific_name>\r
4511                                 </taxonomy>\r
4512                                 <clade>\r
4513                                   <taxonomy>\r
4514                                     <id provider="uniprot">71275</id>\r
4515                                     <scientific_name>rosids</scientific_name>\r
4516                                     <rank>subclass</rank>\r
4517                                   </taxonomy>\r
4518                                   <clade>\r
4519                                     <name>fabids &amp; malvids</name>\r
4520                                     <clade>\r
4521                                       <taxonomy>\r
4522                                         <id provider="uniprot">91835</id>\r
4523                                         <scientific_name>fabids</scientific_name>\r
4524                                         <synonym>eurosids I</synonym>\r
4525                                       </taxonomy>\r
4526                                       <clade>\r
4527                                         <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
4528                                         <clade>\r
4529                                           <name>Rosales &amp; Cucurbitales</name>\r
4530                                           <clade>\r
4531                                             <taxonomy>\r
4532                                               <id provider="uniprot">3745</id>\r
4533                                               <scientific_name>Rosaceae</scientific_name>\r
4534                                               <rank>family</rank>\r
4535                                             </taxonomy>\r
4536                                             <clade>\r
4537                                               <taxonomy>\r
4538                                                 <id provider="uniprot">171638</id>\r
4539                                                 <scientific_name>Rosoideae</scientific_name>\r
4540                                                 <rank>subfamily</rank>\r
4541                                               </taxonomy>\r
4542                                               <clade>\r
4543                                                 <taxonomy>\r
4544                                                   <id provider="uniprot">57918</id>\r
4545                                                   <code>FRAVE</code>\r
4546                                                   <scientific_name>Fragaria vesca</scientific_name>\r
4547                                                   <common_name>Woodland strawberry</common_name>\r
4548                                                   <synonym>Fragaria vesca L.</synonym>\r
4549                                                   <synonym>European strawberry</synonym>\r
4550                                                   <synonym>alpine strawberry</synonym>\r
4551                                                   <synonym>Potentilla vesca</synonym>\r
4552                                                   <rank>species</rank>\r
4553                                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1106/0659.jpeg</uri>\r
4554                                                 </taxonomy>\r
4555                                               </clade>\r
4556                                               <clade>\r
4557                                                 <taxonomy>\r
4558                                                   <id provider="uniprot">211815</id>\r
4559                                                   <scientific_name>Rubus fruticosus</scientific_name>\r
4560                                                   <common_name>shrubby blackberry</common_name>\r
4561                                                   <rank>species</rank>\r
4562                                                   <uri>http://www.plant-identification.co.uk/images/rosaceae/rubus-fruticosus-1.jpg</uri>\r
4563                                                 </taxonomy>\r
4564                                               </clade>\r
4565                                             </clade>\r
4566                                             <clade>\r
4567                                               <taxonomy>\r
4568                                                 <id provider="uniprot">3760</id>\r
4569                                                 <code>PRUPE</code>\r
4570                                                 <scientific_name>Prunus persica</scientific_name>\r
4571                                                 <common_name>Peach</common_name>\r
4572                                                 <synonym>Persica vulgaris</synonym>\r
4573                                                 <synonym>Amygdalus persica</synonym>\r
4574                                                 <rank>species</rank>\r
4575                                                 <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
4576                                               </taxonomy>\r
4577                                             </clade>\r
4578                                           </clade>\r
4579                                           <clade>\r
4580                                             <taxonomy>\r
4581                                               <id provider="uniprot">3659</id>\r
4582                                               <code>CUCSA</code>\r
4583                                               <scientific_name>Cucumis sativus</scientific_name>\r
4584                                               <common_name>Cucumber</common_name>\r
4585                                               <rank>species</rank>\r
4586                                               <uri>http://bioweb.uwlax.edu/bio203/s2009/olson_eri2/clip_image001.jpg</uri>\r
4587                                             </taxonomy>\r
4588                                           </clade>\r
4589                                         </clade>\r
4590                                         <clade>\r
4591                                           <taxonomy>\r
4592                                             <id provider="uniprot">3814</id>\r
4593                                             <scientific_name>Papilionoideae</scientific_name>\r
4594                                             <rank>subfamily</rank>\r
4595                                           </taxonomy>\r
4596                                           <clade>\r
4597                                             <taxonomy>\r
4598                                               <id provider="uniprot">3847</id>\r
4599                                               <code>SOYBN</code>\r
4600                                               <scientific_name>Glycine max</scientific_name>\r
4601                                               <authority>cv. Wye</authority>\r
4602                                               <common_name>Soybean</common_name>\r
4603                                               <synonym>Glycine hispida</synonym>\r
4604                                               <rank>species</rank>\r
4605                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/e/ef/Soja.jpg/400px-Soja.jpg</uri>\r
4606                                             </taxonomy>\r
4607                                           </clade>\r
4608                                           <clade>\r
4609                                             <taxonomy>\r
4610                                               <id provider="uniprot">3880</id>\r
4611                                               <code>MEDTR</code>\r
4612                                               <scientific_name>Medicago truncatula</scientific_name>\r
4613                                               <common_name>Barrel medic</common_name>\r
4614                                               <synonym>Medicago tribuloides</synonym>\r
4615                                               <rank>species</rank>\r
4616                                               <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
4617                                             </taxonomy>\r
4618                                           </clade>\r
4619                                         </clade>\r
4620                                       </clade>\r
4621                                       <clade>\r
4622                                         <taxonomy>\r
4623                                           <id provider="uniprot">3646</id>\r
4624                                           <scientific_name>Malpighiales</scientific_name>\r
4625                                           <rank>order</rank>\r
4626                                         </taxonomy>\r
4627                                         <clade>\r
4628                                           <taxonomy>\r
4629                                             <id provider="uniprot">3977</id>\r
4630                                             <scientific_name>Euphorbiaceae</scientific_name>\r
4631                                             <rank>family</rank>\r
4632                                           </taxonomy>\r
4633                                           <clade>\r
4634                                             <taxonomy>\r
4635                                               <id provider="uniprot">3983</id>\r
4636                                               <code>MANES</code>\r
4637                                               <scientific_name>Manihot esculenta</scientific_name>\r
4638                                               <common_name>Tapioca</common_name>\r
4639                                               <synonym>Jatropha manihot</synonym>\r
4640                                               <rank>species</rank>\r
4641                                               <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
4642                                             </taxonomy>\r
4643                                           </clade>\r
4644                                           <clade>\r
4645                                             <taxonomy>\r
4646                                               <id provider="uniprot">3988</id>\r
4647                                               <code>RICCO</code>\r
4648                                               <scientific_name>Ricinus communis</scientific_name>\r
4649                                               <common_name>Castor bean</common_name>\r
4650                                               <synonym>Ricinus sanguineus</synonym>\r
4651                                               <rank>species</rank>\r
4652                                               <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
4653                                             </taxonomy>\r
4654                                           </clade>\r
4655                                         </clade>\r
4656                                         <clade>\r
4657                                           <taxonomy>\r
4658                                             <id provider="uniprot">3694</id>\r
4659                                             <code>POPTR</code>\r
4660                                             <scientific_name>Populus trichocarpa</scientific_name>\r
4661                                             <common_name>Western balsam poplar</common_name>\r
4662                                             <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
4663                                             <rank>species</rank>\r
4664                                           </taxonomy>\r
4665                                         </clade>\r
4666                                       </clade>\r
4667                                     </clade>\r
4668                                     <clade>\r
4669                                       <taxonomy>\r
4670                                         <id provider="uniprot">91836</id>\r
4671                                         <scientific_name>malvids</scientific_name>\r
4672                                       </taxonomy>\r
4673                                       <clade>\r
4674                                         <name>Brassicales &amp; Sapindales</name>\r
4675                                         <clade>\r
4676                                           <taxonomy>\r
4677                                             <id provider="uniprot">3699</id>\r
4678                                             <scientific_name>Brassicales</scientific_name>\r
4679                                             <rank>order</rank>\r
4680                                           </taxonomy>\r
4681                                           <clade>\r
4682                                             <taxonomy>\r
4683                                               <id provider="uniprot">3700</id>\r
4684                                               <scientific_name>Brassicaceae</scientific_name>\r
4685                                               <rank>family</rank>\r
4686                                             </taxonomy>\r
4687                                             <clade>\r
4688                                               <taxonomy>\r
4689                                                 <id provider="uniprot">3701</id>\r
4690                                                 <scientific_name>Arabidopsis</scientific_name>\r
4691                                                 <rank>genus</rank>\r
4692                                               </taxonomy>\r
4693                                               <clade>\r
4694                                                 <taxonomy>\r
4695                                                   <id provider="uniprot">59689</id>\r
4696                                                   <code>ARALY</code>\r
4697                                                   <scientific_name>Arabidopsis lyrata</scientific_name>\r
4698                                                   <common_name>Lyre-leaved rock-cress</common_name>\r
4699                                                   <synonym>Arabis lyrata</synonym>\r
4700                                                   <rank>species</rank>\r
4701                                                   <uri>http://www.illinoiswildflowers.info/savanna/photos/sand_cress1.jpg</uri>\r
4702                                                 </taxonomy>\r
4703                                               </clade>\r
4704                                               <clade>\r
4705                                                 <taxonomy>\r
4706                                                   <id provider="uniprot">3702</id>\r
4707                                                   <code>ARATH</code>\r
4708                                                   <scientific_name>Arabidopsis thaliana</scientific_name>\r
4709                                                   <common_name>Mouse-ear cress</common_name>\r
4710                                                   <rank>species</rank>\r
4711                                                   <uri>http://www.calflora.net/bloomingplants/images/mouseearcress4.jpg</uri>\r
4712                                                 </taxonomy>\r
4713                                               </clade>\r
4714                                             </clade>\r
4715                                             <clade>\r
4716                                               <taxonomy>\r
4717                                                 <id provider="uniprot">98005</id>\r
4718                                                 <scientific_name>Eutrema</scientific_name>\r
4719                                                 <rank>genus</rank>\r
4720                                               </taxonomy>\r
4721                                               <clade>\r
4722                                                 <taxonomy>\r
4723                                                   <id provider="uniprot">98038</id>\r
4724                                                   <code>THEHA</code>\r
4725                                                   <scientific_name>Thellungiella halophila</scientific_name>\r
4726                                                   <common_name>Salt cress</common_name>\r
4727                                                   <rank>species</rank>\r
4728                                                   <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>\r
4729                                                 </taxonomy>\r
4730                                               </clade>\r
4731                                               <clade>\r
4732                                                 <taxonomy>\r
4733                                                   <id provider="uniprot">75806</id>\r
4734                                                   <code>EUTJA</code>\r
4735                                                   <scientific_name>Eutrema japonica</scientific_name>\r
4736                                                   <common_name>Wasabi plant</common_name>\r
4737                                                   <synonym>Eutrema wasabi</synonym>\r
4738                                                   <rank>species</rank>\r
4739                                                   <uri>http://aoki2.si.gunma-u.ac.jp/BotanicalGarden/PICTs/wasabi3.jpeg</uri>\r
4740                                                 </taxonomy>\r
4741                                               </clade>\r
4742                                             </clade>\r
4743                                           </clade>\r
4744                                           <clade>\r
4745                                             <taxonomy>\r
4746                                               <id provider="uniprot">3649</id>\r
4747                                               <code>CARPA</code>\r
4748                                               <scientific_name>Carica papaya</scientific_name>\r
4749                                               <common_name>Papaya</common_name>\r
4750                                               <rank>species</rank>\r
4751                                               <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
4752                                               <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
4753                                             </taxonomy>\r
4754                                           </clade>\r
4755                                         </clade>\r
4756                                         <clade>\r
4757                                           <taxonomy>\r
4758                                             <id provider="uniprot">41937</id>\r
4759                                             <scientific_name>Sapindales</scientific_name>\r
4760                                             <rank>order</rank>\r
4761                                           </taxonomy>\r
4762                                           <clade>\r
4763                                             <taxonomy>\r
4764                                               <id provider="uniprot">2706</id>\r
4765                                               <scientific_name>Citrus</scientific_name>\r
4766                                               <rank>genus</rank>\r
4767                                             </taxonomy>\r
4768                                             <clade>\r
4769                                               <taxonomy>\r
4770                                                 <id provider="uniprot">85681</id>\r
4771                                                 <code>CCLXX</code>\r
4772                                                 <scientific_name>Citrus clementina</scientific_name>\r
4773                                                 <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
4774                                                 <rank>species</rank>\r
4775                                                 <uri>http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg</uri>\r
4776                                               </taxonomy>\r
4777                                             </clade>\r
4778                                             <clade>\r
4779                                               <taxonomy>\r
4780                                                 <id provider="uniprot">2711</id>\r
4781                                                 <code>CITSI</code>\r
4782                                                 <scientific_name>Citrus sinensis</scientific_name>\r
4783                                                 <common_name>Sweet orange</common_name>\r
4784                                                 <synonym>Citrus x sinensis</synonym>\r
4785                                                 <synonym>Citrus aurantium var. sinensis</synonym>\r
4786                                                 <rank>species</rank>\r
4787                                                 <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
4788                                               </taxonomy>\r
4789                                             </clade>\r
4790                                           </clade>\r
4791                                           <clade>\r
4792                                             <taxonomy>\r
4793                                               <id provider="uniprot">29780</id>\r
4794                                               <code>MANIN</code>\r
4795                                               <scientific_name>Mangifera indica</scientific_name>\r
4796                                               <common_name>Mango</common_name>\r
4797                                               <rank>species</rank>\r
4798                                               <uri>http://www.starrenvironmental.com/images/images/plants/600/09/10/starr-091020-8414.jpg</uri>\r
4799                                             </taxonomy>\r
4800                                           </clade>\r
4801                                           <clade>\r
4802                                             <taxonomy>\r
4803                                               <id provider="uniprot">151069</id>\r
4804                                               <code>LITCN</code>\r
4805                                               <scientific_name>Litchi chinensis</scientific_name>\r
4806                                               <common_name>Lychee</common_name>\r
4807                                               <rank>species</rank>\r
4808                                               <uri>http://ars.usda.gov/images/docs/12623_12817/litchi.jpg</uri>\r
4809                                             </taxonomy>\r
4810                                           </clade>\r
4811                                         </clade>\r
4812                                       </clade>\r
4813                                       <clade>\r
4814                                         <taxonomy>\r
4815                                           <id provider="uniprot">41944</id>\r
4816                                           <scientific_name>Myrtales</scientific_name>\r
4817                                           <rank>order</rank>\r
4818                                         </taxonomy>\r
4819                                         <clade>\r
4820                                           <taxonomy>\r
4821                                             <id provider="uniprot">71139</id>\r
4822                                             <code>EUCGR</code>\r
4823                                             <scientific_name>Eucalyptus grandis</scientific_name>\r
4824                                             <common_name>Flooded gum</common_name>\r
4825                                             <rank>species</rank>\r
4826                                             <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
4827                                           </taxonomy>\r
4828                                         </clade>\r
4829                                         <clade>\r
4830                                           <taxonomy>\r
4831                                             <id provider="uniprot">22663</id>\r
4832                                             <code>PUNGR</code>\r
4833                                             <scientific_name>Punica granatum</scientific_name>\r
4834                                             <common_name>Pomegranate</common_name>\r
4835                                             <rank>species</rank>\r
4836                                             <uri>http://www.biolib.cz/IMG/GAL/14132.jpg</uri>\r
4837                                           </taxonomy>\r
4838                                         </clade>\r
4839                                       </clade>\r
4840                                     </clade>\r
4841                                   </clade>\r
4842                                   <clade>\r
4843                                     <taxonomy>\r
4844                                       <id provider="uniprot">29760</id>\r
4845                                       <code>VITVI</code>\r
4846                                       <scientific_name>Vitis vinifera</scientific_name>\r
4847                                       <common_name>Grape</common_name>\r
4848                                       <rank>species</rank>\r
4849                                       <uri>http://upload.wikimedia.org/wikipedia/commons/f/f2/Vitis-vinifera-2.JPG</uri>\r
4850                                     </taxonomy>\r
4851                                   </clade>\r
4852                                 </clade>\r
4853                                 <clade>\r
4854                                   <taxonomy>\r
4855                                     <id provider="uniprot">91888</id>\r
4856                                     <scientific_name>lamiids</scientific_name>\r
4857                                     <synonym>Gentiananae</synonym>\r
4858                                     <synonym>euasterids I</synonym>\r
4859                                   </taxonomy>\r
4860                                   <clade>\r
4861                                     <taxonomy>\r
4862                                       <id provider="uniprot">4069</id>\r
4863                                       <scientific_name>Solanales</scientific_name>\r
4864                                       <rank>order</rank>\r
4865                                     </taxonomy>\r
4866                                     <clade>\r
4867                                       <taxonomy>\r
4868                                         <id provider="uniprot">4070</id>\r
4869                                         <scientific_name>Solanaceae</scientific_name>\r
4870                                         <rank>family</rank>\r
4871                                       </taxonomy>\r
4872                                       <clade>\r
4873                                         <taxonomy>\r
4874                                           <id provider="uniprot">4107</id>\r
4875                                           <scientific_name>Solanum</scientific_name>\r
4876                                           <rank>genus</rank>\r
4877                                         </taxonomy>\r
4878                                         <clade>\r
4879                                           <taxonomy>\r
4880                                             <id provider="uniprot">49274</id>\r
4881                                             <scientific_name>Lycopersicon</scientific_name>\r
4882                                             <rank>subgenus</rank>\r
4883                                           </taxonomy>\r
4884                                           <clade>\r
4885                                             <taxonomy>\r
4886                                               <id provider="uniprot">4081</id>\r
4887                                               <code>SOLLC</code>\r
4888                                               <scientific_name>Solanum lycopersicum</scientific_name>\r
4889                                               <common_name>Tomato</common_name>\r
4890                                               <synonym>Lycopersicon esculentum</synonym>\r
4891                                               <rank>species</rank>\r
4892                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
4893                                             </taxonomy>\r
4894                                           </clade>\r
4895                                           <clade>\r
4896                                             <taxonomy>\r
4897                                               <id provider="uniprot">4084</id>\r
4898                                               <code>SOLPI</code>\r
4899                                               <scientific_name>Solanum pimpinellifolium</scientific_name>\r
4900                                               <common_name>Currant tomato</common_name>\r
4901                                               <synonym>Lycopersicon pimpinellifolium</synonym>\r
4902                                               <rank>species</rank>\r
4903                                               <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>\r
4904                                             </taxonomy>\r
4905                                           </clade>\r
4906                                         </clade>\r
4907                                         <clade>\r
4908                                           <taxonomy>\r
4909                                             <id provider="uniprot">4113</id>\r
4910                                             <code>SOLTU</code>\r
4911                                             <scientific_name>Solanum tuberosum</scientific_name>\r
4912                                             <common_name>Potato</common_name>\r
4913                                             <rank>species</rank>\r
4914                                             <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>\r
4915                                           </taxonomy>\r
4916                                         </clade>\r
4917                                         <clade>\r
4918                                           <taxonomy>\r
4919                                             <id provider="uniprot">4111</id>\r
4920                                             <code>SOLME</code>\r
4921                                             <scientific_name>Solanum melongena</scientific_name>\r
4922                                             <common_name>Eggplant</common_name>\r
4923                                             <synonym>Aubergine</synonym>\r
4924                                             <rank>species</rank>\r
4925                                             <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1170.jpeg</uri>\r
4926                                           </taxonomy>\r
4927                                         </clade>\r
4928                                       </clade>\r
4929                                       <clade>\r
4930                                         <taxonomy>\r
4931                                           <id provider="uniprot">4097</id>\r
4932                                           <code>TOBAC</code>\r
4933                                           <scientific_name>Nicotiana tabacum</scientific_name>\r
4934                                           <common_name>Common tobacco</common_name>\r
4935                                           <rank>species</rank>\r
4936                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
4937                                         </taxonomy>\r
4938                                       </clade>\r
4939                                     </clade>\r
4940                                     <clade>\r
4941                                       <taxonomy>\r
4942                                         <id provider="uniprot">4120</id>\r
4943                                         <code>IPOBA</code>\r
4944                                         <scientific_name>Ipomoea batatas</scientific_name>\r
4945                                         <common_name>Sweet potato</common_name>\r
4946                                         <synonym>Convolvulus batatas</synonym>\r
4947                                         <rank>species</rank>\r
4948                                         <uri>http://www.starrenvironmental.com/images/images/plants/600/05/04/starr-050407-6234.jpg</uri>\r
4949                                       </taxonomy>\r
4950                                     </clade>\r
4951                                   </clade>\r
4952                                   <clade>\r
4953                                     <taxonomy>\r
4954                                       <id provider="uniprot">4155</id>\r
4955                                       <code>ERYGU</code>\r
4956                                       <scientific_name>Erythranthe guttata</scientific_name>\r
4957                                       <common_name>Yellow monkey flower</common_name>\r
4958                                       <synonym>Mimulus guttatus</synonym>\r
4959                                       <rank>species</rank>\r
4960                                       <uri>http://www.laspilitas.com/images/grid24_18/7128/plants/pictures/a1000.jpg</uri>\r
4961                                     </taxonomy>\r
4962                                   </clade>\r
4963                                 </clade>\r
4964                               </clade>\r
4965                               <clade>\r
4966                                 <taxonomy>\r
4967                                   <id provider="uniprot">218851</id>\r
4968                                   <code>AQUCA</code>\r
4969                                   <scientific_name>Aquilegia caerulea</scientific_name>\r
4970                                   <authority>E.James</authority>\r
4971                                   <common_name>Rocky mountain columbine</common_name>\r
4972                                   <synonym>Aquilegia coerulea</synonym>\r
4973                                   <rank>species</rank>\r
4974                                   <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>\r
4975                                 </taxonomy>\r
4976                               </clade>\r
4977                             </clade>\r
4978                             <clade>\r
4979                               <taxonomy>\r
4980                                 <id provider="uniprot">4447</id>\r
4981                                 <scientific_name>Liliopsida</scientific_name>\r
4982                                 <synonym>monocotyledons</synonym>\r
4983                                 <rank>class</rank>\r
4984                               </taxonomy>\r
4985                               <clade>\r
4986                                 <taxonomy>\r
4987                                   <id provider="uniprot">4479</id>\r
4988                                   <scientific_name>Poaceae</scientific_name>\r
4989                                   <rank>family</rank>\r
4990                                 </taxonomy>\r
4991                                 <clade>\r
4992                                   <taxonomy>\r
4993                                     <id provider="uniprot">147369</id>\r
4994                                     <scientific_name>Panicoideae</scientific_name>\r
4995                                     <rank>subfamily</rank>\r
4996                                   </taxonomy>\r
4997                                   <clade>\r
4998                                     <taxonomy>\r
4999                                       <id provider="uniprot">147429</id>\r
5000                                       <scientific_name>Andropogoneae</scientific_name>\r
5001                                       <rank>tribe</rank>\r
5002                                     </taxonomy>\r
5003                                     <clade>\r
5004                                       <taxonomy>\r
5005                                         <id provider="uniprot">4558</id>\r
5006                                         <code>SORBI</code>\r
5007                                         <scientific_name>Sorghum bicolor</scientific_name>\r
5008                                         <common_name>Sorghum</common_name>\r
5009                                         <synonym>Sorghum vulgare</synonym>\r
5010                                         <rank>species</rank>\r
5011                                       </taxonomy>\r
5012                                     </clade>\r
5013                                     <clade>\r
5014                                       <taxonomy>\r
5015                                         <id provider="uniprot">4577</id>\r
5016                                         <code>MAIZE</code>\r
5017                                         <scientific_name>Zea mays</scientific_name>\r
5018                                         <common_name>Maize</common_name>\r
5019                                         <rank>species</rank>\r
5020                                       </taxonomy>\r
5021                                     </clade>\r
5022                                   </clade>\r
5023                                   <clade>\r
5024                                     <taxonomy>\r
5025                                       <id provider="uniprot">147428</id>\r
5026                                       <scientific_name>Paniceae</scientific_name>\r
5027                                       <rank>tribe</rank>\r
5028                                     </taxonomy>\r
5029                                     <clade>\r
5030                                       <taxonomy>\r
5031                                         <id provider="uniprot">38727</id>\r
5032                                         <code>PANVG</code>\r
5033                                         <scientific_name>Panicum virgatum</scientific_name>\r
5034                                         <common_name>switchgrass</common_name>\r
5035                                         <rank>species</rank>\r
5036                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
5037                                       </taxonomy>\r
5038                                     </clade>\r
5039                                     <clade>\r
5040                                       <taxonomy>\r
5041                                         <id provider="uniprot">4555</id>\r
5042                                         <code>SETIT</code>\r
5043                                         <scientific_name>Setaria italica</scientific_name>\r
5044                                         <common_name>Foxtail millet</common_name>\r
5045                                         <synonym>Panicum italicum</synonym>\r
5046                                         <rank>species</rank>\r
5047                                         <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
5048                                       </taxonomy>\r
5049                                     </clade>\r
5050                                   </clade>\r
5051                                 </clade>\r
5052                                 <clade>\r
5053                                   <taxonomy>\r
5054                                     <id provider="uniprot">359160</id>\r
5055                                     <scientific_name>BEP clade</scientific_name>\r
5056                                   </taxonomy>\r
5057                                   <clade>\r
5058                                     <taxonomy>\r
5059                                       <id provider="uniprot">147368</id>\r
5060                                       <scientific_name>Pooideae</scientific_name>\r
5061                                       <rank>subfamily</rank>\r
5062                                     </taxonomy>\r
5063                                     <clade>\r
5064                                       <taxonomy>\r
5065                                         <id provider="uniprot">147389</id>\r
5066                                         <scientific_name>Triticeae</scientific_name>\r
5067                                         <rank>tribe</rank>\r
5068                                       </taxonomy>\r
5069                                       <clade>\r
5070                                         <taxonomy>\r
5071                                           <id provider="uniprot">112509</id>\r
5072                                           <code>HORVD</code>\r
5073                                           <scientific_name>Hordeum vulgare var. distichum</scientific_name>\r
5074                                           <common_name>Two-rowed barley</common_name>\r
5075                                           <rank>subspecies</rank>\r
5076                                           <uri>http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg</uri>\r
5077                                         </taxonomy>\r
5078                                       </clade>\r
5079                                       <clade>\r
5080                                         <taxonomy>\r
5081                                           <id provider="uniprot">4565</id>\r
5082                                           <code>WHEAT</code>\r
5083                                           <scientific_name>Triticum aestivum</scientific_name>\r
5084                                           <common_name>Wheat</common_name>\r
5085                                           <rank>species</rank>\r
5086                                         </taxonomy>\r
5087                                       </clade>\r
5088                                     </clade>\r
5089                                     <clade>\r
5090                                       <taxonomy>\r
5091                                         <id provider="uniprot">15368</id>\r
5092                                         <code>BRADI</code>\r
5093                                         <scientific_name>Brachypodium distachyon</scientific_name>\r
5094                                         <common_name>Purple false brome</common_name>\r
5095                                         <synonym>Trachynia distachya</synonym>\r
5096                                         <rank>species</rank>\r
5097                                         <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>\r
5098                                       </taxonomy>\r
5099                                     </clade>\r
5100                                   </clade>\r
5101                                   <clade>\r
5102                                     <taxonomy>\r
5103                                       <id provider="uniprot">4527</id>\r
5104                                       <scientific_name>Oryza</scientific_name>\r
5105                                       <rank>genus</rank>\r
5106                                     </taxonomy>\r
5107                                     <clade>\r
5108                                       <taxonomy>\r
5109                                         <id provider="uniprot">4530</id>\r
5110                                         <code>ORYSA</code>\r
5111                                         <scientific_name>Oryza sativa</scientific_name>\r
5112                                         <common_name>Rice</common_name>\r
5113                                         <rank>species</rank>\r
5114                                       </taxonomy>\r
5115                                     </clade>\r
5116                                     <clade>\r
5117                                       <taxonomy>\r
5118                                         <id provider="uniprot">39947</id>\r
5119                                         <code>ORYSJ</code>\r
5120                                         <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
5121                                         <common_name>Rice</common_name>\r
5122                                       </taxonomy>\r
5123                                     </clade>\r
5124                                   </clade>\r
5125                                 </clade>\r
5126                               </clade>\r
5127                               <clade>\r
5128                                 <taxonomy>\r
5129                                   <id provider="uniprot">214687</id>\r
5130                                   <code>MUSAM</code>\r
5131                                   <scientific_name>Musa acuminata subsp. malaccensis</scientific_name>\r
5132                                   <authority>(Ridl.) N.W.Simmonds</authority>\r
5133                                   <common_name>Wild banana</common_name>\r
5134                                   <synonym>Musa malaccensis</synonym>\r
5135                                   <rank>subspecies</rank>\r
5136                                   <uri>http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg</uri>\r
5137                                 </taxonomy>\r
5138                               </clade>\r
5139                             </clade>\r
5140                           </clade>\r
5141                           <clade>\r
5142                             <taxonomy>\r
5143                               <id provider="uniprot">13333</id>\r
5144                               <code>AMBTC</code>\r
5145                               <scientific_name>Amborella trichopoda</scientific_name>\r
5146                               <rank>species</rank>\r
5147                               <uri>http://www.sciencemag.org/content/342/6165/1456/F1.medium.gif</uri>\r
5148                             </taxonomy>\r
5149                           </clade>\r
5150                         </clade>\r
5151                         <clade>\r
5152                           <taxonomy>\r
5153                             <id provider="uniprot">3329</id>\r
5154                             <code>PICAB</code>\r
5155                             <scientific_name>Picea abies</scientific_name>\r
5156                             <authority>H.Karst</authority>\r
5157                             <common_name>Norway spruce</common_name>\r
5158                             <synonym>Picea excelsa</synonym>\r
5159                             <rank>species</rank>\r
5160                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>\r
5161                           </taxonomy>\r
5162                         </clade>\r
5163                       </clade>\r
5164                       <clade>\r
5165                         <taxonomy>\r
5166                           <id provider="uniprot">88036</id>\r
5167                           <code>SELML</code>\r
5168                           <scientific_name>Selaginella moellendorffii</scientific_name>\r
5169                           <authority>Hieron</authority>\r
5170                           <common_name>Spikemoss</common_name>\r
5171                           <rank>species</rank>\r
5172                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>\r
5173                         </taxonomy>\r
5174                       </clade>\r
5175                     </clade>\r
5176                     <clade>\r
5177                       <taxonomy>\r
5178                         <id provider="uniprot">145481</id>\r
5179                         <code>PHYPA</code>\r
5180                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
5181                         <common_name>Moss</common_name>\r
5182                         <rank>subspecies</rank>\r
5183                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>\r
5184                       </taxonomy>\r
5185                     </clade>\r
5186                   </clade>\r
5187                   <clade>\r
5188                     <taxonomy>\r
5189                       <id provider="uniprot">3041</id>\r
5190                       <scientific_name>Chlorophyta</scientific_name>\r
5191                       <rank>phylum</rank>\r
5192                     </taxonomy>\r
5193                     <clade>\r
5194                       <taxonomy>\r
5195                         <id provider="uniprot">13792</id>\r
5196                         <scientific_name>Mamiellales</scientific_name>\r
5197                         <rank>order</rank>\r
5198                       </taxonomy>\r
5199                       <clade>\r
5200                         <taxonomy>\r
5201                           <id provider="uniprot">70447</id>\r
5202                           <scientific_name>Ostreococcus</scientific_name>\r
5203                           <rank>genus</rank>\r
5204                         </taxonomy>\r
5205                         <clade>\r
5206                           <taxonomy>\r
5207                             <id provider="uniprot">436017</id>\r
5208                             <code>OSTLU</code>\r
5209                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
5210                           </taxonomy>\r
5211                         </clade>\r
5212                         <clade>\r
5213                           <taxonomy>\r
5214                             <id provider="uniprot">385169</id>\r
5215                             <code>ORCXX</code>\r
5216                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>\r
5217                             <rank>species</rank>\r
5218                           </taxonomy>\r
5219                         </clade>\r
5220                         <clade>\r
5221                           <taxonomy>\r
5222                             <id provider="uniprot">70448</id>\r
5223                             <code>OSTTA</code>\r
5224                             <scientific_name>Ostreococcus tauri</scientific_name>\r
5225                             <rank>species</rank>\r
5226                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>\r
5227                           </taxonomy>\r
5228                         </clade>\r
5229                       </clade>\r
5230                       <clade>\r
5231                         <taxonomy>\r
5232                           <id provider="uniprot">38832</id>\r
5233                           <scientific_name>Micromonas</scientific_name>\r
5234                           <rank>genus</rank>\r
5235                         </taxonomy>\r
5236                         <clade>\r
5237                           <taxonomy>\r
5238                             <id provider="uniprot">564608</id>\r
5239                             <code>MICPC</code>\r
5240                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
5241                             <common_name>Picoplanktonic green alga</common_name>\r
5242                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>\r
5243                           </taxonomy>\r
5244                         </clade>\r
5245                         <clade>\r
5246                           <taxonomy>\r
5247                             <id provider="uniprot">296587</id>\r
5248                             <code>MICSR</code>\r
5249                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
5250                             <common_name>Picoplanktonic green alga</common_name>\r
5251                             <synonym>Micromonas sp. RCC299</synonym>\r
5252                             <rank>species</rank>\r
5253                           </taxonomy>\r
5254                         </clade>\r
5255                       </clade>\r
5256                     </clade>\r
5257                     <clade>\r
5258                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
5259                       <clade>\r
5260                         <taxonomy>\r
5261                           <id provider="uniprot">75966</id>\r
5262                           <scientific_name>Trebouxiophyceae</scientific_name>\r
5263                           <rank>class</rank>\r
5264                         </taxonomy>\r
5265                         <clade>\r
5266                           <taxonomy>\r
5267                             <id provider="uniprot">763042</id>\r
5268                             <code>ASCXX</code>\r
5269                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
5270                             <rank>species</rank>\r
5271                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
5272                           </taxonomy>\r
5273                         </clade>\r
5274                         <clade>\r
5275                           <taxonomy>\r
5276                             <id provider="uniprot">554065</id>\r
5277                             <code>CHLVA</code>\r
5278                             <scientific_name>Chlorella variabilis</scientific_name>\r
5279                             <authority>Shihira &amp; Krauss 1965</authority>\r
5280                             <common_name>Green alga</common_name>\r
5281                             <synonym>Chlorella sp. NC64A</synonym>\r
5282                             <synonym>Chlorella sp. Bnd1-ZK</synonym>\r
5283                             <rank>species</rank>\r
5284                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>\r
5285                           </taxonomy>\r
5286                         </clade>\r
5287                         <clade>\r
5288                           <taxonomy>\r
5289                             <id provider="uniprot">574566</id>\r
5290                             <code>CSUXX</code>\r
5291                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>\r
5292                             <synonym>Chlorella vulgaris C-169</synonym>\r
5293                             <synonym>Coccomyxa sp. C-169</synonym>\r
5294                             <rank>species</rank>\r
5295                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>\r
5296                           </taxonomy>\r
5297                         </clade>\r
5298                       </clade>\r
5299                       <clade>\r
5300                         <taxonomy>\r
5301                           <id provider="uniprot">3042</id>\r
5302                           <scientific_name>Chlamydomonadales</scientific_name>\r
5303                           <rank>order</rank>\r
5304                         </taxonomy>\r
5305                         <clade>\r
5306                           <taxonomy>\r
5307                             <id provider="uniprot">3055</id>\r
5308                             <code>CHLRE</code>\r
5309                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
5310                             <synonym>Chlamydomonas smithii</synonym>\r
5311                             <rank>species</rank>\r
5312                             <uri>http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif</uri>\r
5313                           </taxonomy>\r
5314                         </clade>\r
5315                         <clade>\r
5316                           <taxonomy>\r
5317                             <id provider="uniprot">3067</id>\r
5318                             <code>VOLCA</code>\r
5319                             <scientific_name>Volvox carteri</scientific_name>\r
5320                             <common_name>Green alga</common_name>\r
5321                             <rank>species</rank>\r
5322                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>\r
5323                           </taxonomy>\r
5324                         </clade>\r
5325                       </clade>\r
5326                     </clade>\r
5327                   </clade>\r
5328                 </clade>\r
5329                 <clade>\r
5330                   <taxonomy>\r
5331                     <id provider="uniprot">2763</id>\r
5332                     <scientific_name>Rhodophyta</scientific_name>\r
5333                     <common_name>red algae</common_name>\r
5334                   </taxonomy>\r
5335                   <clade>\r
5336                     <taxonomy>\r
5337                       <id provider="uniprot">265316</id>\r
5338                       <scientific_name>Cyanidiaceae</scientific_name>\r
5339                       <rank>family</rank>\r
5340                     </taxonomy>\r
5341                     <clade>\r
5342                       <taxonomy>\r
5343                         <id provider="uniprot">45157</id>\r
5344                         <code>CYAME</code>\r
5345                         <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
5346                         <common_name>Red alga</common_name>\r
5347                         <rank>species</rank>\r
5348                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>\r
5349                       </taxonomy>\r
5350                     </clade>\r
5351                     <clade>\r
5352                       <taxonomy>\r
5353                         <id provider="uniprot">130081</id>\r
5354                         <code>GALSU</code>\r
5355                         <scientific_name>Galdieria sulphuraria</scientific_name>\r
5356                         <common_name>Red alga</common_name>\r
5357                         <rank>species</rank>\r
5358                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>\r
5359                       </taxonomy>\r
5360                     </clade>\r
5361                   </clade>\r
5362                   <clade>\r
5363                     <taxonomy>\r
5364                       <id provider="uniprot">2769</id>\r
5365                       <code>CHOCR</code>\r
5366                       <scientific_name>Chondrus crispus</scientific_name>\r
5367                       <common_name>Carragheen moss</common_name>\r
5368                       <synonym>Irish moss</synonym>\r
5369                       <rank>species</rank>\r
5370                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>\r
5371                     </taxonomy>\r
5372                   </clade>\r
5373                 </clade>\r
5374                 <clade>\r
5375                   <taxonomy>\r
5376                     <id provider="uniprot">38254</id>\r
5377                     <scientific_name>Glaucocystophyceae</scientific_name>\r
5378                     <rank>class</rank>\r
5379                   </taxonomy>\r
5380                   <clade>\r
5381                     <taxonomy>\r
5382                       <id provider="uniprot">2762</id>\r
5383                       <code>CYAPA</code>\r
5384                       <scientific_name>Cyanophora paradoxa</scientific_name>\r
5385                       <rank>species</rank>\r
5386                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>\r
5387                     </taxonomy>\r
5388                   </clade>\r
5389                   <clade>\r
5390                     <taxonomy>\r
5391                       <id provider="uniprot">38271</id>\r
5392                       <scientific_name>Glaucocystis nostochinearum</scientific_name>\r
5393                       <rank>species</rank>\r
5394                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>\r
5395                     </taxonomy>\r
5396                   </clade>\r
5397                 </clade>\r
5398               </clade>\r
5399               <clade>\r
5400                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>\r
5401                 <clade>\r
5402                   <taxonomy>\r
5403                     <id provider="uniprot">2903</id>\r
5404                     <code>EMIHU</code>\r
5405                     <scientific_name>Emiliania huxleyi</scientific_name>\r
5406                     <synonym>Pontosphaera huxleyi</synonym>\r
5407                     <rank>species</rank>\r
5408                     <uri>http://www.nhm.ac.uk/resources-rx/images/1049/emiliania-huxleyi-light-microscope-image_68318_1.jpg</uri>\r
5409                     <uri>http://cmore.soest.hawaii.edu/education/kidskorner/images/emiliania_600px.jpg</uri>\r
5410                   </taxonomy>\r
5411                 </clade>\r
5412                 <clade>\r
5413                   <taxonomy>\r
5414                     <id provider="uniprot">55529</id>\r
5415                     <code>GUITH</code>\r
5416                     <scientific_name>Guillardia theta</scientific_name>\r
5417                     <synonym>Cryptomonas phi</synonym>\r
5418                     <rank>species</rank>\r
5419                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>\r
5420                   </taxonomy>\r
5421                   <reference doi="10.1016/j.cub.2007.03.069">\r
5422                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>\r
5423                   </reference>\r
5424                   <reference>\r
5425                   </reference>\r
5426                 </clade>\r
5427               </clade>\r
5428             </clade>\r
5429             <clade>\r
5430               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>\r
5431               <reference doi="10.1186/1471-2148-10-377">\r
5432                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>\r
5433               </reference>\r
5434               <reference>\r
5435               </reference>\r
5436               <clade>\r
5437                 <name>Stramenopiles &amp; Alveolata</name>\r
5438                 <clade>\r
5439                   <taxonomy>\r
5440                     <id provider="uniprot">33630</id>\r
5441                     <scientific_name>Alveolata</scientific_name>\r
5442                   </taxonomy>\r
5443                   <reference doi="10.1371/journal.pone.0019933">\r
5444                     <desc>Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates</desc>\r
5445                   </reference>\r
5446                   <clade>\r
5447                     <name>Myzozoa</name>\r
5448                     <clade>\r
5449                       <taxonomy>\r
5450                         <id provider="uniprot">5794</id>\r
5451                         <scientific_name>Apicomplexa</scientific_name>\r
5452                         <rank>phylum</rank>\r
5453                       </taxonomy>\r
5454                       <reference doi="10.1101/gr.083386.108">\r
5455                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>\r
5456                       </reference>\r
5457                       <reference>\r
5458                       </reference>\r
5459                       <clade>\r
5460                         <name>Aconoidasida &amp; Coccidia</name>\r
5461                         <clade>\r
5462                           <taxonomy>\r
5463                             <id provider="uniprot">422676</id>\r
5464                             <scientific_name>Aconoidasida</scientific_name>\r
5465                             <rank>class</rank>\r
5466                           </taxonomy>\r
5467                           <clade>\r
5468                             <taxonomy>\r
5469                               <id provider="uniprot">5820</id>\r
5470                               <scientific_name>Plasmodium</scientific_name>\r
5471                               <rank>genus</rank>\r
5472                             </taxonomy>\r
5473                             <clade>\r
5474                               <taxonomy>\r
5475                                 <id provider="uniprot">5825</id>\r
5476                                 <code>PLACH</code>\r
5477                                 <scientific_name>Plasmodium chabaudi</scientific_name>\r
5478                                 <rank>species</rank>\r
5479                               </taxonomy>\r
5480                             </clade>\r
5481                             <clade>\r
5482                               <taxonomy>\r
5483                                 <id provider="uniprot">36329</id>\r
5484                                 <code>PLAF7</code>\r
5485                                 <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>\r
5486                               </taxonomy>\r
5487                             </clade>\r
5488                             <clade>\r
5489                               <taxonomy>\r
5490                                 <id provider="uniprot">73239</id>\r
5491                                 <code>PLAYO</code>\r
5492                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
5493                                 <rank>subspecies</rank>\r
5494                               </taxonomy>\r
5495                             </clade>\r
5496                             <clade>\r
5497                               <taxonomy>\r
5498                                 <id provider="uniprot">126793</id>\r
5499                                 <code>PLAVS</code>\r
5500                                 <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>\r
5501                               </taxonomy>\r
5502                             </clade>\r
5503                           </clade>\r
5504                           <clade>\r
5505                             <taxonomy>\r
5506                               <id provider="uniprot">5863</id>\r
5507                               <scientific_name>Piroplasmida</scientific_name>\r
5508                               <common_name>Piroplasmids</common_name>\r
5509                             </taxonomy>\r
5510                             <clade>\r
5511                               <name>Theileria</name>\r
5512                               <taxonomy>\r
5513                                 <id provider="uniprot">5873</id>\r
5514                                 <scientific_name>Theileria</scientific_name>\r
5515                                 <rank>genus</rank>\r
5516                               </taxonomy>\r
5517                               <clade>\r
5518                                 <taxonomy>\r
5519                                   <id provider="uniprot">5874</id>\r
5520                                   <code>THEAN</code>\r
5521                                   <scientific_name>Theileria annulata</scientific_name>\r
5522                                   <rank>species</rank>\r
5523                                 </taxonomy>\r
5524                               </clade>\r
5525                               <clade>\r
5526                                 <taxonomy>\r
5527                                   <id provider="uniprot">5875</id>\r
5528                                   <code>THEPA</code>\r
5529                                   <scientific_name>Theileria parva</scientific_name>\r
5530                                   <common_name>East coast fever infection agent</common_name>\r
5531                                   <rank>species</rank>\r
5532                                 </taxonomy>\r
5533                               </clade>\r
5534                             </clade>\r
5535                             <clade>\r
5536                               <taxonomy>\r
5537                                 <id provider="uniprot">5865</id>\r
5538                                 <code>BABBO</code>\r
5539                                 <scientific_name>Babesia bovis</scientific_name>\r
5540                                 <rank>species</rank>\r
5541                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>\r
5542                               </taxonomy>\r
5543                             </clade>\r
5544                           </clade>\r
5545                         </clade>\r
5546                         <clade>\r
5547                           <taxonomy>\r
5548                             <id provider="uniprot">423054</id>\r
5549                             <scientific_name>Eimeriorina</scientific_name>\r
5550                             <rank>suborder</rank>\r
5551                           </taxonomy>\r
5552                           <reference doi="10.1093/molbev/msn213">\r
5553                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
5554                           </reference>\r
5555                           <reference>\r
5556                           </reference>\r
5557                           <clade>\r
5558                             <taxonomy>\r
5559                               <id provider="uniprot">5800</id>\r
5560                               <scientific_name>Eimeria</scientific_name>\r
5561                               <rank>genus</rank>\r
5562                             </taxonomy>\r
5563                             <clade>\r
5564                               <taxonomy>\r
5565                                 <id provider="uniprot">5802</id>\r
5566                                 <code>EIMTE</code>\r
5567                                 <scientific_name>Eimeria tenella</scientific_name>\r
5568                                 <common_name>Coccidian parasite</common_name>\r
5569                                 <rank>species</rank>\r
5570                                 <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
5571                               </taxonomy>\r
5572                             </clade>\r
5573                             <clade>\r
5574                               <taxonomy>\r
5575                                 <id provider="uniprot">5801</id>\r
5576                                 <code>EIMAC</code>\r
5577                                 <scientific_name>Eimeria acervulina</scientific_name>\r
5578                                 <common_name>Coccidian parasite</common_name>\r
5579                                 <rank>species</rank>\r
5580                                 <uri>http://www.k-state.edu/parasitology/625tutorials/FIGacervulina.jpg</uri>\r
5581                               </taxonomy>\r
5582                             </clade>\r
5583                           </clade>\r
5584                           <clade>\r
5585                             <taxonomy>\r
5586                               <id provider="uniprot">5811</id>\r
5587                               <code>TOXGO</code>\r
5588                               <scientific_name>Toxoplasma gondii</scientific_name>\r
5589                               <rank>species</rank>\r
5590                             </taxonomy>\r
5591                           </clade>\r
5592                         </clade>\r
5593                       </clade>\r
5594                       <clade>\r
5595                         <taxonomy>\r
5596                           <id provider="uniprot">5806</id>\r
5597                           <scientific_name>Cryptosporidium</scientific_name>\r
5598                           <rank>genus</rank>\r
5599                         </taxonomy>\r
5600                         <clade>\r
5601                           <taxonomy>\r
5602                             <id provider="uniprot">237895</id>\r
5603                             <code>CRYHO</code>\r
5604                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
5605                             <rank>species</rank>\r
5606                           </taxonomy>\r
5607                         </clade>\r
5608                         <clade>\r
5609                           <taxonomy>\r
5610                             <id provider="uniprot">5807</id>\r
5611                             <code>CRYPV</code>\r
5612                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
5613                             <rank>species</rank>\r
5614                           </taxonomy>\r
5615                         </clade>\r
5616                         <clade>\r
5617                           <taxonomy>\r
5618                             <id provider="uniprot">353152</id>\r
5619                             <code>CRYPI</code>\r
5620                             <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>\r
5621                           </taxonomy>\r
5622                         </clade>\r
5623                       </clade>\r
5624                     </clade>\r
5625                     <clade>\r
5626                       <name>Dinoflagellates &amp; Perkinsus</name>\r
5627                       <clade>\r
5628                         <taxonomy>\r
5629                           <id provider="uniprot">2864</id>\r
5630                           <scientific_name>Dinophyceae</scientific_name>\r
5631                           <rank>class</rank>\r
5632                         </taxonomy>\r
5633                         <clade>\r
5634                           <taxonomy>\r
5635                             <id provider="uniprot">2866</id>\r
5636                             <code>CRYCO</code>\r
5637                             <scientific_name>Crypthecodinium cohnii</scientific_name>\r
5638                             <common_name>Dinoflagellate</common_name>\r
5639                             <rank>species</rank>\r
5640                             <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>\r
5641                           </taxonomy>\r
5642                         </clade>\r
5643                         <clade>\r
5644                           <taxonomy>\r
5645                             <id provider="uniprot">2923</id>\r
5646                             <code>THOHE</code>\r
5647                             <scientific_name>Thoracosphaera heimii</scientific_name>\r
5648                             <common_name>Dinoflagellate</common_name>\r
5649                             <rank>species</rank>\r
5650                             <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>\r
5651                           </taxonomy>\r
5652                         </clade>\r
5653                       </clade>\r
5654                       <clade>\r
5655                         <taxonomy>\r
5656                           <id provider="uniprot">423536</id>\r
5657                           <code>PERM5</code>\r
5658                           <scientific_name>Perkinsus marinus (strain ATCC 50983 / TXsc)</scientific_name>\r
5659                           <uri>http://www.eurl-mollusc.eu/var/storage/images/medias-ifremer/medias-crlmollusc/images/perkinsus-zoosporangium/633746-1-eng-GB/Perkinsus-zoosporangium.jpg</uri>\r
5660                         </taxonomy>\r
5661                       </clade>\r
5662                     </clade>\r
5663                   </clade>\r
5664                   <clade>\r
5665                     <taxonomy>\r
5666                       <id provider="uniprot">5878</id>\r
5667                       <scientific_name>Ciliophora</scientific_name>\r
5668                     </taxonomy>\r
5669                     <clade>\r
5670                       <taxonomy>\r
5671                         <id provider="uniprot">431838</id>\r
5672                         <scientific_name>Intramacronucleata</scientific_name>\r
5673                         <rank>subphylum</rank>\r
5674                       </taxonomy>\r
5675                       <clade>\r
5676                         <taxonomy>\r
5677                           <id provider="uniprot">6020</id>\r
5678                           <scientific_name>Oligohymenophorea</scientific_name>\r
5679                           <rank>class</rank>\r
5680                         </taxonomy>\r
5681                         <clade>\r
5682                           <taxonomy>\r
5683                             <id provider="uniprot">31277</id>\r
5684                             <scientific_name>Hymenostomatida</scientific_name>\r
5685                             <rank>order</rank>\r
5686                           </taxonomy>\r
5687                           <clade>\r
5688                             <taxonomy>\r
5689                               <id provider="uniprot">857967</id>\r
5690                               <code>ICHMG</code>\r
5691                               <scientific_name>Ichthyophthirius multifiliis (strain G5)</scientific_name>\r
5692                               <common_name>White spot disease agent</common_name>\r
5693                               <synonym>Ich</synonym>\r
5694                               <uri>http://www.vet.cornell.edu/microbiology/FishDisease/aquaticprog/highlights/ich/ICH2.JPG</uri>\r
5695                             </taxonomy>\r
5696                           </clade>\r
5697                           <clade>\r
5698                             <taxonomy>\r
5699                               <id provider="uniprot">312017</id>\r
5700                               <code>TETTS</code>\r
5701                               <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>\r
5702                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>\r
5703                             </taxonomy>\r
5704                           </clade>\r
5705                         </clade>\r
5706                         <clade>\r
5707                           <taxonomy>\r
5708                             <id provider="uniprot">5888</id>\r
5709                             <code>PARTE</code>\r
5710                             <scientific_name>Paramecium tetraurelia</scientific_name>\r
5711                             <rank>species</rank>\r
5712                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>\r
5713                           </taxonomy>\r
5714                         </clade>\r
5715                       </clade>\r
5716                       <clade>\r
5717                         <taxonomy>\r
5718                           <id provider="uniprot">1172189</id>\r
5719                           <code>OTRXX</code>\r
5720                           <scientific_name>Oxytricha trifallax</scientific_name>\r
5721                           <authority>Stein, 1859</authority>\r
5722                           <rank>species</rank>\r
5723                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>\r
5724                         </taxonomy>\r
5725                       </clade>\r
5726                     </clade>\r
5727                     <clade>\r
5728                       <taxonomy>\r
5729                         <id provider="uniprot">5961</id>\r
5730                         <code>BLEJA</code>\r
5731                         <scientific_name>Blepharisma japonicum</scientific_name>\r
5732                         <rank>species</rank>\r
5733                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>\r
5734                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>\r
5735                       </taxonomy>\r
5736                     </clade>\r
5737                   </clade>\r
5738                 </clade>\r
5739                 <clade>\r
5740                   <taxonomy>\r
5741                     <id provider="uniprot">33634</id>\r
5742                     <scientific_name>Stramenopiles</scientific_name>\r
5743                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>\r
5744                     <synonym>Chromophyta</synonym>\r
5745                     <synonym>heterokonts</synonym>\r
5746                     <synonym>Heterokontophyta</synonym>\r
5747                   </taxonomy>\r
5748                   <clade>\r
5749                     <name>Labyrinthulomycetes &amp; Ochrophyta &amp; Oomycetes</name>\r
5750                     <clade>\r
5751                       <name>Ochrophyta &amp; Oomycetes</name>\r
5752                       <reference doi="10.1016/j.protis.2008.11.004">\r
5753                         <desc>Seven Gene Phylogeny of Heterokonts</desc>\r
5754                       </reference>\r
5755                       <reference>\r
5756                       </reference>\r
5757                       <clade>\r
5758                         <taxonomy>\r
5759                           <scientific_name>Ochrophyta</scientific_name>\r
5760                         </taxonomy>\r
5761                         <clade>\r
5762                           <taxonomy>\r
5763                             <id provider="uniprot">2836</id>\r
5764                             <scientific_name>Bacillariophyta</scientific_name>\r
5765                             <common_name>diatoms</common_name>\r
5766                             <rank>class</rank>\r
5767                           </taxonomy>\r
5768                           <clade>\r
5769                             <taxonomy>\r
5770                               <id provider="uniprot">33850</id>\r
5771                               <scientific_name>Bacillariophycidae</scientific_name>\r
5772                             </taxonomy>\r
5773                             <clade>\r
5774                               <taxonomy>\r
5775                                 <id provider="uniprot">186039</id>\r
5776                                 <code>FCYXX</code>\r
5777                                 <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
5778                                 <authority>Krieger</authority>\r
5779                                 <synonym>Nitzschia cylindrus</synonym>\r
5780                                 <rank>species</rank>\r
5781                                 <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>\r
5782                               </taxonomy>\r
5783                             </clade>\r
5784                             <clade>\r
5785                               <taxonomy>\r
5786                                 <id provider="uniprot">2850</id>\r
5787                                 <code>PHATR</code>\r
5788                                 <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
5789                                 <authority>Bohlin</authority>\r
5790                                 <rank>species</rank>\r
5791                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>\r
5792                               </taxonomy>\r
5793                             </clade>\r
5794                           </clade>\r
5795                           <clade>\r
5796                             <taxonomy>\r
5797                               <id provider="uniprot">35127</id>\r
5798                               <scientific_name>Thalassiosira</scientific_name>\r
5799                               <rank>genus</rank>\r
5800                             </taxonomy>\r
5801                             <clade>\r
5802                               <taxonomy>\r
5803                                 <id provider="uniprot">35128</id>\r
5804                                 <code>THAPS</code>\r
5805                                 <scientific_name>Thalassiosira pseudonana</scientific_name>\r
5806                                 <authority>Hasle &amp; Heimdal</authority>\r
5807                                 <common_name>Marine diatom</common_name>\r
5808                                 <synonym>Cyclotella nana</synonym>\r
5809                                 <rank>species</rank>\r
5810                                 <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>\r
5811                               </taxonomy>\r
5812                             </clade>\r
5813                             <clade>\r
5814                               <taxonomy>\r
5815                                 <id provider="uniprot">159749</id>\r
5816                                 <code>THAOC</code>\r
5817                                 <scientific_name>Thalassiosira oceanica</scientific_name>\r
5818                                 <common_name>Marine diatom</common_name>\r
5819                                 <rank>species</rank>\r
5820                               </taxonomy>\r
5821                             </clade>\r
5822                           </clade>\r
5823                         </clade>\r
5824                         <clade>\r
5825                           <name>Pelagophyceae &amp; Phaeophyceae</name>\r
5826                           <reference doi="10.1128/AEM.06952-11">\r
5827                             <desc>Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean</desc>\r
5828                           </reference>\r
5829                           <reference>\r
5830                           </reference>\r
5831                           <clade>\r
5832                             <taxonomy>\r
5833                               <id provider="uniprot">44056</id>\r
5834                               <code>AURAN</code>\r
5835                               <scientific_name>Aureococcus anophagefferens</scientific_name>\r
5836                               <authority>Hargraves &amp; Sieburth</authority>\r
5837                               <common_name>Harmful bloom alga</common_name>\r
5838                               <rank>species</rank>\r
5839                               <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>\r
5840                             </taxonomy>\r
5841                           </clade>\r
5842                           <clade>\r
5843                             <taxonomy>\r
5844                               <id provider="uniprot">2880</id>\r
5845                               <code>ECTSI</code>\r
5846                               <scientific_name>Ectocarpus siliculosus</scientific_name>\r
5847                               <common_name>Brown alga</common_name>\r
5848                               <rank>species</rank>\r
5849                               <uri>http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg</uri>\r
5850                             </taxonomy>\r
5851                           </clade>\r
5852                         </clade>\r
5853                       </clade>\r
5854                       <clade>\r
5855                         <taxonomy>\r
5856                           <id provider="uniprot">4762</id>\r
5857                           <scientific_name>Oomycetes</scientific_name>\r
5858                         </taxonomy>\r
5859                         <clade>\r
5860                           <taxonomy>\r
5861                             <id provider="uniprot">4776</id>\r
5862                             <scientific_name>Peronosporales</scientific_name>\r
5863                             <rank>order</rank>\r
5864                           </taxonomy>\r
5865                           <clade>\r
5866                             <taxonomy>\r
5867                               <id provider="uniprot">4783</id>\r
5868                               <scientific_name>Phytophthora</scientific_name>\r
5869                               <rank>genus</rank>\r
5870                             </taxonomy>\r
5871                             <clade>\r
5872                               <taxonomy>\r
5873                                 <id provider="uniprot">4787</id>\r
5874                                 <code>PHYIN</code>\r
5875                                 <scientific_name>Phytophthora infestans</scientific_name>\r
5876                                 <authority>(Mont.) de Bary 1876</authority>\r
5877                                 <common_name>Potato late blight fungus</common_name>\r
5878                                 <rank>species</rank>\r
5879                                 <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>\r
5880                               </taxonomy>\r
5881                             </clade>\r
5882                             <clade>\r
5883                               <taxonomy>\r
5884                                 <id provider="uniprot">164328</id>\r
5885                                 <code>PHYRM</code>\r
5886                                 <scientific_name>Phytophthora ramorum</scientific_name>\r
5887                                 <common_name>Sudden oak death agent</common_name>\r
5888                                 <rank>species</rank>\r
5889                                 <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>\r
5890                               </taxonomy>\r
5891                             </clade>\r
5892                             <clade>\r
5893                               <taxonomy>\r
5894                                 <id provider="uniprot">67593</id>\r
5895                                 <code>PHYSO</code>\r
5896                                 <scientific_name>Phytophthora sojae</scientific_name>\r
5897                                 <common_name>Soybean stem and root rot agent</common_name>\r
5898                                 <synonym>Phytophthora megasperma f. sp. glycines</synonym>\r
5899                                 <rank>species</rank>\r
5900                                 <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>\r
5901                               </taxonomy>\r
5902                             </clade>\r
5903                             <clade>\r
5904                               <taxonomy>\r
5905                                 <id provider="uniprot">4785</id>\r
5906                                 <code>PHYCI</code>\r
5907                                 <scientific_name>Phytophthora cinnamomi</scientific_name>\r
5908                                 <common_name>Cinnamon fungus</common_name>\r
5909                                 <rank>species</rank>\r
5910                                 <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>\r
5911                               </taxonomy>\r
5912                             </clade>\r
5913                             <clade>\r
5914                               <taxonomy>\r
5915                                 <id provider="uniprot">4784</id>\r
5916                                 <code>PHYCP</code>\r
5917                                 <scientific_name>Phytophthora capsici</scientific_name>\r
5918                                 <rank>species</rank>\r
5919                                 <uri>http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg</uri>\r
5920                               </taxonomy>\r
5921                             </clade>\r
5922                           </clade>\r
5923                           <clade>\r
5924                             <taxonomy>\r
5925                               <id provider="uniprot">559515</id>\r
5926                               <code>HYAAE</code>\r
5927                               <scientific_name>Hyaloperonospora arabidopsidis (strain Emoy2)</scientific_name>\r
5928                               <common_name>Downy mildew agent</common_name>\r
5929                               <synonym>Peronospora arabidopsidis</synonym>\r
5930                               <uri>http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg</uri>\r
5931                             </taxonomy>\r
5932                           </clade>\r
5933                         </clade>\r
5934                         <clade>\r
5935                           <taxonomy>\r
5936                             <id provider="uniprot">65071</id>\r
5937                             <code>PYTUL</code>\r
5938                             <scientific_name>Pythium ultimum</scientific_name>\r
5939                             <rank>species</rank>\r
5940                             <uri>http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg</uri>\r
5941                           </taxonomy>\r
5942                         </clade>\r
5943                       </clade>\r
5944                     </clade>\r
5945                     <clade>\r
5946                       <taxonomy>\r
5947                         <id provider="uniprot">33674</id>\r
5948                         <scientific_name>Thraustochytriaceae</scientific_name>\r
5949                         <synonym>Thraustochytriales</synonym>\r
5950                         <rank>family</rank>\r
5951                       </taxonomy>\r
5952                       <clade>\r
5953                         <taxonomy>\r
5954                           <id provider="uniprot">702273</id>\r
5955                           <code>AKEXX</code>\r
5956                           <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>\r
5957                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>\r
5958                         </taxonomy>\r
5959                       </clade>\r
5960                       <clade>\r
5961                         <taxonomy>\r
5962                           <id provider="uniprot">876976</id>\r
5963                           <code>SAGXX</code>\r
5964                           <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>\r
5965                           <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>\r
5966                         </taxonomy>\r
5967                       </clade>\r
5968                       <clade>\r
5969                         <taxonomy>\r
5970                           <id provider="uniprot">87102</id>\r
5971                           <code>ALIXX</code>\r
5972                           <scientific_name>Aurantiochytrium limacinum</scientific_name>\r
5973                           <synonym>Schizochytrium limacinum</synonym>\r
5974                           <rank>species</rank>\r
5975                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>\r
5976                         </taxonomy>\r
5977                       </clade>\r
5978                     </clade>\r
5979                   </clade>\r
5980                   <clade>\r
5981                     <taxonomy>\r
5982                       <id provider="uniprot">12968</id>\r
5983                       <code>BLAHO</code>\r
5984                       <scientific_name>Blastocystis hominis</scientific_name>\r
5985                       <rank>species</rank>\r
5986                     </taxonomy>\r
5987                   </clade>\r
5988                 </clade>\r
5989               </clade>\r
5990               <clade>\r
5991                 <taxonomy>\r
5992                   <id provider="uniprot">543769</id>\r
5993                   <scientific_name>Rhizaria</scientific_name>\r
5994                 </taxonomy>\r
5995                 <clade>\r
5996                   <taxonomy>\r
5997                     <id provider="uniprot">29178</id>\r
5998                     <scientific_name>Foraminifera</scientific_name>\r
5999                     <common_name>foraminifers</common_name>\r
6000                     <rank>class</rank>\r
6001                   </taxonomy>\r
6002                   <clade>\r
6003                     <taxonomy>\r
6004                       <id provider="uniprot">71427</id>\r
6005                       <scientific_name>Allogromia laticollaris</scientific_name>\r
6006                       <rank>species</rank>\r
6007                       <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
6008                     </taxonomy>\r
6009                   </clade>\r
6010                   <clade>\r
6011                     <taxonomy>\r
6012                       <id provider="uniprot">46433</id>\r
6013                       <code>RETFI</code>\r
6014                       <scientific_name>Reticulomyxa filosa</scientific_name>\r
6015                       <rank>species</rank>\r
6016                       <uri>http://forambarcoding.unige.ch/system/pictures/269/s600/R.filosa2.jpg</uri>\r
6017                     </taxonomy>\r
6018                   </clade>\r
6019                 </clade>\r
6020                 <clade>\r
6021                   <taxonomy>\r
6022                     <id provider="uniprot">227086</id>\r
6023                     <code>BIGNA</code>\r
6024                     <scientific_name>Bigelowiella natans</scientific_name>\r
6025                     <common_name>Pedinomonas minutissima</common_name>\r
6026                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>\r
6027                     <synonym>Pedinomonas minutissima</synonym>\r
6028                     <rank>species</rank>\r
6029                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>\r
6030                   </taxonomy>\r
6031                 </clade>\r
6032               </clade>\r
6033             </clade>\r
6034           </clade>\r
6035           <clade>\r
6036             <name>Excavata</name>\r
6037             <reference doi="10.1038/nature04546">\r
6038             </reference>\r
6039             <clade>\r
6040               <name>Kinetoplastida &amp; Heterolobosea</name>\r
6041               <clade>\r
6042                 <taxonomy>\r
6043                   <id provider="uniprot">5653</id>\r
6044                   <scientific_name>Kinetoplastida</scientific_name>\r
6045                   <common_name>kinetoplasts</common_name>\r
6046                   <rank>order</rank>\r
6047                 </taxonomy>\r
6048                 <clade>\r
6049                   <taxonomy>\r
6050                     <id provider="uniprot">5654</id>\r
6051                     <scientific_name>Trypanosomatidae</scientific_name>\r
6052                     <rank>family</rank>\r
6053                   </taxonomy>\r
6054                   <clade>\r
6055                     <taxonomy>\r
6056                       <id provider="uniprot">5690</id>\r
6057                       <scientific_name>Trypanosoma</scientific_name>\r
6058                       <rank>genus</rank>\r
6059                     </taxonomy>\r
6060                     <clade>\r
6061                       <taxonomy>\r
6062                         <id provider="uniprot">999953</id>\r
6063                         <code>TRYB2</code>\r
6064                         <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>\r
6065                         <rank>strain</rank>\r
6066                       </taxonomy>\r
6067                     </clade>\r
6068                     <clade>\r
6069                       <taxonomy>\r
6070                         <id provider="uniprot">5693</id>\r
6071                         <code>TRYCR</code>\r
6072                         <scientific_name>Trypanosoma cruzi</scientific_name>\r
6073                         <rank>species</rank>\r
6074                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>\r
6075                       </taxonomy>\r
6076                     </clade>\r
6077                   </clade>\r
6078                   <clade>\r
6079                     <taxonomy>\r
6080                       <id provider="uniprot">5658</id>\r
6081                       <scientific_name>Leishmania</scientific_name>\r
6082                       <rank>genus</rank>\r
6083                     </taxonomy>\r
6084                     <clade>\r
6085                       <taxonomy>\r
6086                         <id provider="uniprot">5664</id>\r
6087                         <code>LEIMA</code>\r
6088                         <scientific_name>Leishmania major</scientific_name>\r
6089                         <rank>species</rank>\r
6090                       </taxonomy>\r
6091                     </clade>\r
6092                     <clade>\r
6093                       <taxonomy>\r
6094                         <id provider="uniprot">5671</id>\r
6095                         <code>LEIIN</code>\r
6096                         <scientific_name>Leishmania infantum</scientific_name>\r
6097                         <rank>species</rank>\r
6098                       </taxonomy>\r
6099                     </clade>\r
6100                     <clade>\r
6101                       <taxonomy>\r
6102                         <id provider="uniprot">5660</id>\r
6103                         <code>LEIBR</code>\r
6104                         <scientific_name>Leishmania braziliensis</scientific_name>\r
6105                         <rank>species</rank>\r
6106                       </taxonomy>\r
6107                     </clade>\r
6108                   </clade>\r
6109                 </clade>\r
6110                 <clade>\r
6111                   <taxonomy>\r
6112                     <id provider="uniprot">75058</id>\r
6113                     <code>BODSA</code>\r
6114                     <scientific_name>Bodo saltans</scientific_name>\r
6115                     <common_name>Flagellated protozoan</common_name>\r
6116                     <rank>species</rank>\r
6117                     <uri>http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg</uri>\r
6118                   </taxonomy>\r
6119                 </clade>\r
6120               </clade>\r
6121               <clade>\r
6122                 <taxonomy>\r
6123                   <id provider="uniprot">5762</id>\r
6124                   <code>NAEGR</code>\r
6125                   <scientific_name>Naegleria gruberi</scientific_name>\r
6126                   <common_name>Amoeba</common_name>\r
6127                   <rank>species</rank>\r
6128                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>\r
6129                 </taxonomy>\r
6130               </clade>\r
6131             </clade>\r
6132             <clade>\r
6133               <name>Metamonada</name>\r
6134               <clade>\r
6135                 <taxonomy>\r
6136                   <id provider="uniprot">184922</id>\r
6137                   <code>GIAIC</code>\r
6138                   <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>\r
6139                   <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>\r
6140                   <synonym>Giardia lamblia</synonym>\r
6141                   <rank>species</rank>\r
6142                 </taxonomy>\r
6143               </clade>\r
6144               <clade>\r
6145                 <taxonomy>\r
6146                   <id provider="uniprot">5722</id>\r
6147                   <code>TRIVA</code>\r
6148                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
6149                   <rank>species</rank>\r
6150                 </taxonomy>\r
6151               </clade>\r
6152             </clade>\r
6153           </clade>\r
6154           <clade>\r
6155             <taxonomy>\r
6156               <id provider="uniprot">554296</id>\r
6157               <scientific_name>Apusozoa</scientific_name>\r
6158             </taxonomy>\r
6159             <reference doi="10.1016/j.protis.2008.06.002">\r
6160               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>\r
6161             </reference>\r
6162             <clade>\r
6163               <taxonomy>\r
6164                 <id provider="uniprot">554453</id>\r
6165                 <scientific_name>Planomonas micra</scientific_name>\r
6166                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>\r
6167                 <synonym>Apusomonadidae sp. micra</synonym>\r
6168                 <rank>species</rank>\r
6169               </taxonomy>\r
6170             </clade>\r
6171             <clade>\r
6172               <taxonomy>\r
6173                 <id provider="uniprot">529818</id>\r
6174                 <code>TTRXX</code>\r
6175                 <scientific_name>Thecamonas trahens</scientific_name>\r
6176                 <authority>Larsen &amp; Patterson 1990</authority>\r
6177                 <synonym>Amastigomonas trahens</synonym>\r
6178                 <rank>species</rank>\r
6179                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>\r
6180               </taxonomy>\r
6181             </clade>\r
6182           </clade>\r
6183         </clade>\r
6184       </clade>\r
6185       <clade>\r
6186         <taxonomy>\r
6187           <id provider="uniprot">2157</id>\r
6188           <scientific_name>Archaea</scientific_name>\r
6189           <rank>superkingdom</rank>\r
6190         </taxonomy>\r
6191         <clade>\r
6192           <name>a_62</name>\r
6193           <clade>\r
6194             <name>a_56</name>\r
6195             <clade>\r
6196               <taxonomy>\r
6197                 <id provider="uniprot">28890</id>\r
6198                 <scientific_name>Euryarchaeota</scientific_name>\r
6199                 <rank>phylum</rank>\r
6200               </taxonomy>\r
6201               <clade>\r
6202                 <name>a_44</name>\r
6203                 <clade>\r
6204                   <name>a_28</name>\r
6205                   <clade>\r
6206                     <name>a_26</name>\r
6207                     <clade>\r
6208                       <taxonomy>\r
6209                         <id provider="uniprot">224756</id>\r
6210                         <scientific_name>Methanomicrobia</scientific_name>\r
6211                         <rank>class</rank>\r
6212                       </taxonomy>\r
6213                       <clade>\r
6214                         <name>a_14</name>\r
6215                         <clade>\r
6216                           <name>a_12</name>\r
6217                           <clade>\r
6218                             <taxonomy>\r
6219                               <id provider="uniprot">2206</id>\r
6220                               <scientific_name>Methanosarcinaceae</scientific_name>\r
6221                               <rank>family</rank>\r
6222                             </taxonomy>\r
6223                             <clade>\r
6224                               <taxonomy>\r
6225                                 <id provider="uniprot">2207</id>\r
6226                                 <scientific_name>Methanosarcina</scientific_name>\r
6227                                 <rank>genus</rank>\r
6228                               </taxonomy>\r
6229                               <clade>\r
6230                                 <name>a_2</name>\r
6231                                 <clade>\r
6232                                   <taxonomy>\r
6233                                     <id provider="uniprot">2214</id>\r
6234                                     <code>METAC</code>\r
6235                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
6236                                     <rank>species</rank>\r
6237                                   </taxonomy>\r
6238                                 </clade>\r
6239                                 <clade>\r
6240                                   <taxonomy>\r
6241                                     <id provider="uniprot">269797</id>\r
6242                                     <code>METBF</code>\r
6243                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
6244                                   </taxonomy>\r
6245                                 </clade>\r
6246                               </clade>\r
6247                               <clade>\r
6248                                 <taxonomy>\r
6249                                   <id provider="uniprot">2209</id>\r
6250                                   <code>METMA</code>\r
6251                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
6252                                   <synonym>Methanosarcina frisia</synonym>\r
6253                                   <rank>species</rank>\r
6254                                 </taxonomy>\r
6255                               </clade>\r
6256                             </clade>\r
6257                             <clade>\r
6258                               <taxonomy>\r
6259                                 <id provider="uniprot">259564</id>\r
6260                                 <code>METBU</code>\r
6261                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
6262                               </taxonomy>\r
6263                             </clade>\r
6264                           </clade>\r
6265                           <clade>\r
6266                             <name>a_11</name>\r
6267                             <taxonomy>\r
6268                               <id provider="uniprot">2191</id>\r
6269                               <scientific_name>Methanomicrobiales</scientific_name>\r
6270                               <rank>order</rank>\r
6271                             </taxonomy>\r
6272                             <clade>\r
6273                               <name>a_9</name>\r
6274                               <clade>\r
6275                                 <taxonomy>\r
6276                                   <id provider="uniprot">456442</id>\r
6277                                   <code>METB6</code>\r
6278                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
6279                                 </taxonomy>\r
6280                               </clade>\r
6281                               <clade>\r
6282                                 <taxonomy>\r
6283                                   <id provider="uniprot">2203</id>\r
6284                                   <code>METHU</code>\r
6285                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
6286                                   <rank>species</rank>\r
6287                                 </taxonomy>\r
6288                               </clade>\r
6289                             </clade>\r
6290                             <clade>\r
6291                               <taxonomy>\r
6292                                 <id provider="uniprot">368407</id>\r
6293                                 <code>METMJ</code>\r
6294                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
6295                               </taxonomy>\r
6296                             </clade>\r
6297                           </clade>\r
6298                         </clade>\r
6299                         <clade>\r
6300                           <taxonomy>\r
6301                             <id provider="uniprot">410358</id>\r
6302                             <code>METLZ</code>\r
6303                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
6304                           </taxonomy>\r
6305                         </clade>\r
6306                       </clade>\r
6307                       <clade>\r
6308                         <taxonomy>\r
6309                           <id provider="uniprot">349307</id>\r
6310                           <code>METTP</code>\r
6311                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
6312                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
6313                         </taxonomy>\r
6314                       </clade>\r
6315                     </clade>\r
6316                     <clade>\r
6317                       <taxonomy>\r
6318                         <id provider="uniprot">2236</id>\r
6319                         <scientific_name>Halobacteriaceae</scientific_name>\r
6320                         <rank>family</rank>\r
6321                       </taxonomy>\r
6322                       <clade>\r
6323                         <name>a_23</name>\r
6324                         <clade>\r
6325                           <name>a_19</name>\r
6326                           <clade>\r
6327                             <taxonomy>\r
6328                               <id provider="uniprot">2238</id>\r
6329                               <code>HALMA</code>\r
6330                               <scientific_name>Haloarcula marismortui</scientific_name>\r
6331                               <synonym>Halobacterium marismortui</synonym>\r
6332                               <rank>species</rank>\r
6333                             </taxonomy>\r
6334                           </clade>\r
6335                           <clade>\r
6336                             <taxonomy>\r
6337                               <id provider="uniprot">2257</id>\r
6338                               <code>NATPH</code>\r
6339                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
6340                               <common_name>Natronobacterium pharaonis</common_name>\r
6341                               <rank>species</rank>\r
6342                             </taxonomy>\r
6343                           </clade>\r
6344                         </clade>\r
6345                         <clade>\r
6346                           <name>a_22</name>\r
6347                           <taxonomy>\r
6348                             <id provider="uniprot">2239</id>\r
6349                             <scientific_name>Halobacterium</scientific_name>\r
6350                             <rank>genus</rank>\r
6351                           </taxonomy>\r
6352                           <clade>\r
6353                             <taxonomy>\r
6354                               <id provider="uniprot">478009</id>\r
6355                               <code>HALS3</code>\r
6356                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
6357                             </taxonomy>\r
6358                           </clade>\r
6359                           <clade>\r
6360                             <taxonomy>\r
6361                               <id provider="uniprot">2243</id>\r
6362                               <code>HALSP</code>\r
6363                               <scientific_name>Halobacterium sp.</scientific_name>\r
6364                               <rank>species</rank>\r
6365                             </taxonomy>\r
6366                           </clade>\r
6367                         </clade>\r
6368                       </clade>\r
6369                       <clade>\r
6370                         <taxonomy>\r
6371                           <id provider="uniprot">362976</id>\r
6372                           <code>HALWD</code>\r
6373                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
6374                         </taxonomy>\r
6375                       </clade>\r
6376                     </clade>\r
6377                   </clade>\r
6378                   <clade>\r
6379                     <taxonomy>\r
6380                       <id provider="uniprot">224325</id>\r
6381                       <code>ARCFU</code>\r
6382                       <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>\r
6383                       <rank>strain</rank>\r
6384                     </taxonomy>\r
6385                   </clade>\r
6386                 </clade>\r
6387                 <clade>\r
6388                   <name>a_43</name>\r
6389                   <clade>\r
6390                     <name>a_41</name>\r
6391                     <clade>\r
6392                       <taxonomy>\r
6393                         <id provider="uniprot">2182</id>\r
6394                         <scientific_name>Methanococcales</scientific_name>\r
6395                         <rank>order</rank>\r
6396                       </taxonomy>\r
6397                       <clade>\r
6398                         <name>a_31</name>\r
6399                         <clade>\r
6400                           <taxonomy>\r
6401                             <id provider="uniprot">2190</id>\r
6402                             <code>METJA</code>\r
6403                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
6404                             <synonym>Methanococcus jannaschii</synonym>\r
6405                             <rank>species</rank>\r
6406                           </taxonomy>\r
6407                         </clade>\r
6408                         <clade>\r
6409                           <taxonomy>\r
6410                             <id provider="uniprot">419665</id>\r
6411                             <code>META3</code>\r
6412                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
6413                           </taxonomy>\r
6414                         </clade>\r
6415                       </clade>\r
6416                       <clade>\r
6417                         <name>a_34</name>\r
6418                         <taxonomy>\r
6419                           <id provider="uniprot">2184</id>\r
6420                           <scientific_name>Methanococcus</scientific_name>\r
6421                           <rank>genus</rank>\r
6422                         </taxonomy>\r
6423                         <clade>\r
6424                           <taxonomy>\r
6425                             <id provider="uniprot">39152</id>\r
6426                             <code>METMP</code>\r
6427                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
6428                             <synonym>Methanococcus deltae</synonym>\r
6429                             <rank>species</rank>\r
6430                           </taxonomy>\r
6431                         </clade>\r
6432                         <clade>\r
6433                           <taxonomy>\r
6434                             <id provider="uniprot">406327</id>\r
6435                             <code>METVS</code>\r
6436                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
6437                           </taxonomy>\r
6438                         </clade>\r
6439                       </clade>\r
6440                     </clade>\r
6441                     <clade>\r
6442                       <name>a_40</name>\r
6443                       <taxonomy>\r
6444                         <id provider="uniprot">2159</id>\r
6445                         <scientific_name>Methanobacteriaceae</scientific_name>\r
6446                         <rank>family</rank>\r
6447                       </taxonomy>\r
6448                       <clade>\r
6449                         <name>a_38</name>\r
6450                         <clade>\r
6451                           <taxonomy>\r
6452                             <id provider="uniprot">420247</id>\r
6453                             <code>METS3</code>\r
6454                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
6455                           </taxonomy>\r
6456                         </clade>\r
6457                         <clade>\r
6458                           <taxonomy>\r
6459                             <id provider="uniprot">339860</id>\r
6460                             <code>METST</code>\r
6461                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
6462                           </taxonomy>\r
6463                         </clade>\r
6464                       </clade>\r
6465                       <clade>\r
6466                         <taxonomy>\r
6467                           <id provider="uniprot">187420</id>\r
6468                           <code>METTH</code>\r
6469                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
6470                           <synonym>Methanobacterium thermoautotrophicum</synonym>\r
6471                         </taxonomy>\r
6472                       </clade>\r
6473                     </clade>\r
6474                   </clade>\r
6475                   <clade>\r
6476                     <taxonomy>\r
6477                       <id provider="uniprot">2320</id>\r
6478                       <code>METKA</code>\r
6479                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
6480                       <rank>species</rank>\r
6481                     </taxonomy>\r
6482                   </clade>\r
6483                 </clade>\r
6484               </clade>\r
6485               <clade>\r
6486                 <taxonomy>\r
6487                   <id provider="uniprot">2259</id>\r
6488                   <scientific_name>Thermococcaceae</scientific_name>\r
6489                   <rank>family</rank>\r
6490                 </taxonomy>\r
6491                 <clade>\r
6492                   <name>PYRFU &amp; THEKO &amp; PYRAB &amp; PYRHO</name>\r
6493                   <clade>\r
6494                     <name>PYRFU &amp; THEKO</name>\r
6495                     <clade>\r
6496                       <taxonomy>\r
6497                         <id provider="uniprot">2261</id>\r
6498                         <code>PYRFU</code>\r
6499                         <scientific_name>Pyrococcus furiosus</scientific_name>\r
6500                         <rank>species</rank>\r
6501                       </taxonomy>\r
6502                     </clade>\r
6503                     <clade>\r
6504                       <taxonomy>\r
6505                         <id provider="uniprot">69014</id>\r
6506                         <code>THEKO</code>\r
6507                         <scientific_name>Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
6508                         <synonym>Pyrococcus kodakaraensis (strain KOD1)</synonym>\r
6509                       </taxonomy>\r
6510                     </clade>\r
6511                   </clade>\r
6512                   <clade>\r
6513                     <taxonomy>\r
6514                       <id provider="uniprot">2260</id>\r
6515                       <scientific_name>Pyrococcus</scientific_name>\r
6516                       <rank>genus</rank>\r
6517                     </taxonomy>\r
6518                     <clade>\r
6519                       <taxonomy>\r
6520                         <id provider="uniprot">29292</id>\r
6521                         <code>PYRAB</code>\r
6522                         <scientific_name>Pyrococcus abyssi</scientific_name>\r
6523                         <rank>species</rank>\r
6524                       </taxonomy>\r
6525                     </clade>\r
6526                     <clade>\r
6527                       <taxonomy>\r
6528                         <id provider="uniprot">53953</id>\r
6529                         <code>PYRHO</code>\r
6530                         <scientific_name>Pyrococcus horikoshii</scientific_name>\r
6531                         <rank>species</rank>\r
6532                       </taxonomy>\r
6533                     </clade>\r
6534                   </clade>\r
6535                 </clade>\r
6536                 <clade>\r
6537                   <taxonomy>\r
6538                     <id provider="uniprot">523850</id>\r
6539                     <code>THEON</code>\r
6540                     <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>\r
6541                   </taxonomy>\r
6542                 </clade>\r
6543               </clade>\r
6544             </clade>\r
6545             <clade>\r
6546               <name>a_55</name>\r
6547               <clade>\r
6548                 <taxonomy>\r
6549                   <id provider="uniprot">228908</id>\r
6550                   <code>NANEQ</code>\r
6551                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
6552                 </taxonomy>\r
6553               </clade>\r
6554               <clade>\r
6555                 <taxonomy>\r
6556                   <id provider="uniprot">436308</id>\r
6557                   <code>NITMS</code>\r
6558                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
6559                 </taxonomy>\r
6560               </clade>\r
6561             </clade>\r
6562           </clade>\r
6563           <clade>\r
6564             <taxonomy>\r
6565               <id provider="uniprot">2301</id>\r
6566               <scientific_name>Thermoplasmatales</scientific_name>\r
6567               <rank>order</rank>\r
6568             </taxonomy>\r
6569             <clade>\r
6570               <name>a_59</name>\r
6571               <taxonomy>\r
6572                 <id provider="uniprot">2302</id>\r
6573                 <scientific_name>Thermoplasma</scientific_name>\r
6574                 <rank>genus</rank>\r
6575               </taxonomy>\r
6576               <clade>\r
6577                 <taxonomy>\r
6578                   <id provider="uniprot">273075</id>\r
6579                   <code>THEAC</code>\r
6580                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
6581                 </taxonomy>\r
6582               </clade>\r
6583               <clade>\r
6584                 <taxonomy>\r
6585                   <id provider="uniprot">273116</id>\r
6586                   <code>THEVO</code>\r
6587                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
6588                 </taxonomy>\r
6589               </clade>\r
6590             </clade>\r
6591             <clade>\r
6592               <taxonomy>\r
6593                 <id provider="uniprot">263820</id>\r
6594                 <code>PICTO</code>\r
6595                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
6596               </taxonomy>\r
6597             </clade>\r
6598           </clade>\r
6599         </clade>\r
6600         <clade>\r
6601           <name>a_93</name>\r
6602           <clade>\r
6603             <taxonomy>\r
6604               <id provider="uniprot">183924</id>\r
6605               <scientific_name>Thermoprotei</scientific_name>\r
6606               <rank>class</rank>\r
6607             </taxonomy>\r
6608             <clade>\r
6609               <name>a_83</name>\r
6610               <clade>\r
6611                 <name>a_81</name>\r
6612                 <clade>\r
6613                   <taxonomy>\r
6614                     <id provider="uniprot">2267</id>\r
6615                     <scientific_name>Thermoproteaceae</scientific_name>\r
6616                     <rank>family</rank>\r
6617                   </taxonomy>\r
6618                   <clade>\r
6619                     <name>a_71</name>\r
6620                     <clade>\r
6621                       <name>a_67</name>\r
6622                       <taxonomy>\r
6623                         <id provider="uniprot">2276</id>\r
6624                         <scientific_name>Pyrobaculum</scientific_name>\r
6625                         <rank>genus</rank>\r
6626                       </taxonomy>\r
6627                       <clade>\r
6628                         <name>a_65</name>\r
6629                         <clade>\r
6630                           <taxonomy>\r
6631                             <id provider="uniprot">340102</id>\r
6632                             <code>PYRAR</code>\r
6633                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
6634                           </taxonomy>\r
6635                         </clade>\r
6636                         <clade>\r
6637                           <taxonomy>\r
6638                             <id provider="uniprot">410359</id>\r
6639                             <code>PYRCJ</code>\r
6640                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
6641                           </taxonomy>\r
6642                         </clade>\r
6643                       </clade>\r
6644                       <clade>\r
6645                         <taxonomy>\r
6646                           <id provider="uniprot">13773</id>\r
6647                           <code>PYRAE</code>\r
6648                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
6649                           <rank>species</rank>\r
6650                         </taxonomy>\r
6651                       </clade>\r
6652                     </clade>\r
6653                     <clade>\r
6654                       <name>a_70</name>\r
6655                       <clade>\r
6656                         <taxonomy>\r
6657                           <id provider="uniprot">384616</id>\r
6658                           <code>PYRIL</code>\r
6659                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
6660                         </taxonomy>\r
6661                       </clade>\r
6662                       <clade>\r
6663                         <taxonomy>\r
6664                           <id provider="uniprot">444157</id>\r
6665                           <code>THENV</code>\r
6666                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
6667                           <synonym>Thermoproteus neutrophilus</synonym>\r
6668                         </taxonomy>\r
6669                       </clade>\r
6670                     </clade>\r
6671                   </clade>\r
6672                   <clade>\r
6673                     <taxonomy>\r
6674                       <id provider="uniprot">397948</id>\r
6675                       <code>CALMQ</code>\r
6676                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
6677                     </taxonomy>\r
6678                   </clade>\r
6679                 </clade>\r
6680                 <clade>\r
6681                   <name>a_80</name>\r
6682                   <taxonomy>\r
6683                     <id provider="uniprot">118883</id>\r
6684                     <scientific_name>Sulfolobaceae</scientific_name>\r
6685                     <rank>family</rank>\r
6686                   </taxonomy>\r
6687                   <clade>\r
6688                     <name>a_78</name>\r
6689                     <taxonomy>\r
6690                       <id provider="uniprot">2284</id>\r
6691                       <scientific_name>Sulfolobus</scientific_name>\r
6692                       <rank>genus</rank>\r
6693                     </taxonomy>\r
6694                     <clade>\r
6695                       <name>a_76</name>\r
6696                       <clade>\r
6697                         <taxonomy>\r
6698                           <id provider="uniprot">2285</id>\r
6699                           <code>SULAC</code>\r
6700                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
6701                           <rank>species</rank>\r
6702                         </taxonomy>\r
6703                       </clade>\r
6704                       <clade>\r
6705                         <taxonomy>\r
6706                           <id provider="uniprot">273063</id>\r
6707                           <code>SULTO</code>\r
6708                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
6709                         </taxonomy>\r
6710                       </clade>\r
6711                     </clade>\r
6712                     <clade>\r
6713                       <taxonomy>\r
6714                         <id provider="uniprot">2287</id>\r
6715                         <code>SULSO</code>\r
6716                         <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>\r
6717                         <synonym>Sulfolobus solfataricus P2</synonym>\r
6718                         <rank>strain</rank>\r
6719                       </taxonomy>\r
6720                     </clade>\r
6721                   </clade>\r
6722                   <clade>\r
6723                     <taxonomy>\r
6724                       <id provider="uniprot">399549</id>\r
6725                       <code>METS5</code>\r
6726                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
6727                     </taxonomy>\r
6728                   </clade>\r
6729                 </clade>\r
6730               </clade>\r
6731               <clade>\r
6732                 <taxonomy>\r
6733                   <id provider="uniprot">56636</id>\r
6734                   <code>AERPE</code>\r
6735                   <scientific_name>Aeropyrum pernix</scientific_name>\r
6736                   <rank>species</rank>\r
6737                 </taxonomy>\r
6738               </clade>\r
6739             </clade>\r
6740             <clade>\r
6741               <name>a_90</name>\r
6742               <clade>\r
6743                 <name>a_88</name>\r
6744                 <clade>\r
6745                   <name>a_86</name>\r
6746                   <clade>\r
6747                     <taxonomy>\r
6748                       <id provider="uniprot">399550</id>\r
6749                       <code>STAMF</code>\r
6750                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
6751                     </taxonomy>\r
6752                   </clade>\r
6753                   <clade>\r
6754                     <taxonomy>\r
6755                       <id provider="uniprot">368408</id>\r
6756                       <code>THEPD</code>\r
6757                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
6758                     </taxonomy>\r
6759                   </clade>\r
6760                 </clade>\r
6761                 <clade>\r
6762                   <taxonomy>\r
6763                     <id provider="uniprot">415426</id>\r
6764                     <code>HYPBU</code>\r
6765                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
6766                   </taxonomy>\r
6767                 </clade>\r
6768               </clade>\r
6769               <clade>\r
6770                 <taxonomy>\r
6771                   <id provider="uniprot">453591</id>\r
6772                   <code>IGNH4</code>\r
6773                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
6774                 </taxonomy>\r
6775               </clade>\r
6776             </clade>\r
6777           </clade>\r
6778           <clade>\r
6779             <taxonomy>\r
6780               <id provider="uniprot">374847</id>\r
6781               <code>KORCO</code>\r
6782               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
6783             </taxonomy>\r
6784           </clade>\r
6785         </clade>\r
6786       </clade>\r
6787     </clade>\r
6788     <clade>\r
6789       <taxonomy>\r
6790         <id provider="uniprot">2</id>\r
6791         <scientific_name>Bacteria</scientific_name>\r
6792         <rank>superkingdom</rank>\r
6793       </taxonomy>\r
6794       <clade>\r
6795         <name>b_278</name>\r
6796         <clade>\r
6797           <name>b_268</name>\r
6798           <clade>\r
6799             <name>b_226</name>\r
6800             <clade>\r
6801               <name>b_200</name>\r
6802               <clade>\r
6803                 <name>b_194</name>\r
6804                 <clade>\r
6805                   <name>b_104</name>\r
6806                   <clade>\r
6807                     <name>b_80</name>\r
6808                     <clade>\r
6809                       <taxonomy>\r
6810                         <id provider="uniprot">1224</id>\r
6811                         <scientific_name>Proteobacteria</scientific_name>\r
6812                         <rank>phylum</rank>\r
6813                       </taxonomy>\r
6814                       <clade>\r
6815                         <name>b_52</name>\r
6816                         <clade>\r
6817                           <name>b_44</name>\r
6818                           <clade>\r
6819                             <name>b_30</name>\r
6820                             <clade>\r
6821                               <name>b_24</name>\r
6822                               <taxonomy>\r
6823                                 <id provider="uniprot">1236</id>\r
6824                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
6825                                 <rank>class</rank>\r
6826                               </taxonomy>\r
6827                               <clade>\r
6828                                 <name>b_16</name>\r
6829                                 <clade>\r
6830                                   <taxonomy>\r
6831                                     <id provider="uniprot">543</id>\r
6832                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
6833                                     <rank>family</rank>\r
6834                                   </taxonomy>\r
6835                                   <clade>\r
6836                                     <name>b_8</name>\r
6837                                     <clade>\r
6838                                       <name>b_6</name>\r
6839                                       <clade>\r
6840                                         <name>b_4</name>\r
6841                                         <clade>\r
6842                                           <taxonomy>\r
6843                                             <id provider="uniprot">561</id>\r
6844                                             <scientific_name>Escherichia</scientific_name>\r
6845                                             <rank>genus</rank>\r
6846                                           </taxonomy>\r
6847                                           <clade>\r
6848                                             <taxonomy>\r
6849                                               <id provider="uniprot">83333</id>\r
6850                                               <code>ECOLI</code>\r
6851                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
6852                                             </taxonomy>\r
6853                                           </clade>\r
6854                                           <clade>\r
6855                                             <taxonomy>\r
6856                                               <id provider="uniprot">83334</id>\r
6857                                               <code>ECO57</code>\r
6858                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
6859                                             </taxonomy>\r
6860                                           </clade>\r
6861                                         </clade>\r
6862                                         <clade>\r
6863                                           <taxonomy>\r
6864                                             <id provider="uniprot">623</id>\r
6865                                             <code>SHIFL</code>\r
6866                                             <scientific_name>Shigella flexneri</scientific_name>\r
6867                                             <rank>species</rank>\r
6868                                           </taxonomy>\r
6869                                         </clade>\r
6870                                       </clade>\r
6871                                       <clade>\r
6872                                         <taxonomy>\r
6873                                           <id provider="uniprot">90371</id>\r
6874                                           <code>SALTY</code>\r
6875                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
6876                                         </taxonomy>\r
6877                                       </clade>\r
6878                                     </clade>\r
6879                                     <clade>\r
6880                                       <taxonomy>\r
6881                                         <id provider="uniprot">632</id>\r
6882                                         <code>YERPE</code>\r
6883                                         <scientific_name>Yersinia pestis</scientific_name>\r
6884                                         <rank>species</rank>\r
6885                                       </taxonomy>\r
6886                                     </clade>\r
6887                                   </clade>\r
6888                                   <clade>\r
6889                                     <taxonomy>\r
6890                                       <id provider="uniprot">29488</id>\r
6891                                       <code>PHOLU</code>\r
6892                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
6893                                       <synonym>Xenorhabdus luminescens</synonym>\r
6894                                       <rank>species</rank>\r
6895                                     </taxonomy>\r
6896                                   </clade>\r
6897                                 </clade>\r
6898                                 <clade>\r
6899                                   <name>b_15</name>\r
6900                                   <clade>\r
6901                                     <name>b_13</name>\r
6902                                     <taxonomy>\r
6903                                       <id provider="uniprot">641</id>\r
6904                                       <scientific_name>Vibrionaceae</scientific_name>\r
6905                                       <rank>family</rank>\r
6906                                     </taxonomy>\r
6907                                     <clade>\r
6908                                       <taxonomy>\r
6909                                         <id provider="uniprot">74109</id>\r
6910                                         <code>PHOPR</code>\r
6911                                         <scientific_name>Photobacterium profundum</scientific_name>\r
6912                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
6913                                         <rank>species</rank>\r
6914                                       </taxonomy>\r
6915                                     </clade>\r
6916                                     <clade>\r
6917                                       <taxonomy>\r
6918                                         <id provider="uniprot">666</id>\r
6919                                         <code>VIBCH</code>\r
6920                                         <scientific_name>Vibrio cholerae</scientific_name>\r
6921                                         <rank>species</rank>\r
6922                                       </taxonomy>\r
6923                                     </clade>\r
6924                                   </clade>\r
6925                                   <clade>\r
6926                                     <taxonomy>\r
6927                                       <id provider="uniprot">318161</id>\r
6928                                       <code>SHEDO</code>\r
6929                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
6930                                     </taxonomy>\r
6931                                   </clade>\r
6932                                 </clade>\r
6933                               </clade>\r
6934                               <clade>\r
6935                                 <name>b_23</name>\r
6936                                 <clade>\r
6937                                   <name>b_21</name>\r
6938                                   <taxonomy>\r
6939                                     <id provider="uniprot">286</id>\r
6940                                     <scientific_name>Pseudomonas</scientific_name>\r
6941                                     <rank>genus</rank>\r
6942                                   </taxonomy>\r
6943                                   <clade>\r
6944                                     <name>b_19</name>\r
6945                                     <clade>\r
6946                                       <taxonomy>\r
6947                                         <id provider="uniprot">220664</id>\r
6948                                         <code>PSEF5</code>\r
6949                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
6950                                       </taxonomy>\r
6951                                     </clade>\r
6952                                     <clade>\r
6953                                       <taxonomy>\r
6954                                         <id provider="uniprot">205922</id>\r
6955                                         <code>PSEPF</code>\r
6956                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
6957                                       </taxonomy>\r
6958                                     </clade>\r
6959                                   </clade>\r
6960                                   <clade>\r
6961                                     <taxonomy>\r
6962                                       <id provider="uniprot">287</id>\r
6963                                       <code>PSEAE</code>\r
6964                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
6965                                       <rank>species</rank>\r
6966                                     </taxonomy>\r
6967                                   </clade>\r
6968                                 </clade>\r
6969                                 <clade>\r
6970                                   <taxonomy>\r
6971                                     <id provider="uniprot">290398</id>\r
6972                                     <code>CHRSD</code>\r
6973                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
6974                                   </taxonomy>\r
6975                                 </clade>\r
6976                               </clade>\r
6977                             </clade>\r
6978                             <clade>\r
6979                               <name>b_29</name>\r
6980                               <taxonomy>\r
6981                                 <id provider="uniprot">28216</id>\r
6982                                 <scientific_name>Betaproteobacteria</scientific_name>\r
6983                                 <rank>class</rank>\r
6984                               </taxonomy>\r
6985                               <clade>\r
6986                                 <taxonomy>\r
6987                                   <id provider="uniprot">159087</id>\r
6988                                   <code>DECAR</code>\r
6989                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
6990                                 </taxonomy>\r
6991                               </clade>\r
6992                               <clade>\r
6993                                 <taxonomy>\r
6994                                   <id provider="uniprot">266264</id>\r
6995                                   <code>RALME</code>\r
6996                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
6997                                 </taxonomy>\r
6998                               </clade>\r
6999                             </clade>\r
7000                           </clade>\r
7001                           <clade>\r
7002                             <name>b_43</name>\r
7003                             <clade>\r
7004                               <name>b_41</name>\r
7005                               <clade>\r
7006                                 <name>b_35</name>\r
7007                                 <taxonomy>\r
7008                                   <id provider="uniprot">28216</id>\r
7009                                   <scientific_name>Betaproteobacteria</scientific_name>\r
7010                                   <rank>class</rank>\r
7011                                 </taxonomy>\r
7012                                 <clade>\r
7013                                   <name>b_33</name>\r
7014                                   <taxonomy>\r
7015                                     <id provider="uniprot">206379</id>\r
7016                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
7017                                     <rank>family</rank>\r
7018                                   </taxonomy>\r
7019                                   <clade>\r
7020                                     <taxonomy>\r
7021                                       <id provider="uniprot">915</id>\r
7022                                       <code>NITEU</code>\r
7023                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
7024                                       <rank>species</rank>\r
7025                                     </taxonomy>\r
7026                                   </clade>\r
7027                                   <clade>\r
7028                                     <taxonomy>\r
7029                                       <id provider="uniprot">323848</id>\r
7030                                       <code>NITMU</code>\r
7031                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
7032                                     </taxonomy>\r
7033                                   </clade>\r
7034                                 </clade>\r
7035                                 <clade>\r
7036                                   <taxonomy>\r
7037                                     <id provider="uniprot">36861</id>\r
7038                                     <code>THIDE</code>\r
7039                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
7040                                     <rank>species</rank>\r
7041                                   </taxonomy>\r
7042                                 </clade>\r
7043                               </clade>\r
7044                               <clade>\r
7045                                 <name>b_40</name>\r
7046                                 <taxonomy>\r
7047                                   <id provider="uniprot">135613</id>\r
7048                                   <scientific_name>Chromatiales</scientific_name>\r
7049                                   <rank>order</rank>\r
7050                                 </taxonomy>\r
7051                                 <clade>\r
7052                                   <name>b_38</name>\r
7053                                   <taxonomy>\r
7054                                     <id provider="uniprot">72276</id>\r
7055                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
7056                                     <common_name>purple sulfur bacteria</common_name>\r
7057                                     <rank>family</rank>\r
7058                                   </taxonomy>\r
7059                                   <clade>\r
7060                                     <taxonomy>\r
7061                                       <id provider="uniprot">187272</id>\r
7062                                       <code>ALHEH</code>\r
7063                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
7064                                     </taxonomy>\r
7065                                   </clade>\r
7066                                   <clade>\r
7067                                     <taxonomy>\r
7068                                       <id provider="uniprot">349124</id>\r
7069                                       <code>HALHL</code>\r
7070                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
7071                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
7072                                     </taxonomy>\r
7073                                   </clade>\r
7074                                 </clade>\r
7075                                 <clade>\r
7076                                   <taxonomy>\r
7077                                     <id provider="uniprot">323261</id>\r
7078                                     <code>NITOC</code>\r
7079                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
7080                                   </taxonomy>\r
7081                                 </clade>\r
7082                               </clade>\r
7083                             </clade>\r
7084                             <clade>\r
7085                               <taxonomy>\r
7086                                 <id provider="uniprot">317025</id>\r
7087                                 <code>THICR</code>\r
7088                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
7089                               </taxonomy>\r
7090                             </clade>\r
7091                           </clade>\r
7092                         </clade>\r
7093                         <clade>\r
7094                           <name>b_51</name>\r
7095                           <taxonomy>\r
7096                             <id provider="uniprot">1236</id>\r
7097                             <scientific_name>Gammaproteobacteria</scientific_name>\r
7098                             <rank>class</rank>\r
7099                           </taxonomy>\r
7100                           <clade>\r
7101                             <name>b_47</name>\r
7102                             <clade>\r
7103                               <taxonomy>\r
7104                                 <id provider="uniprot">135577</id>\r
7105                                 <code>IDILO</code>\r
7106                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
7107                                 <rank>species</rank>\r
7108                               </taxonomy>\r
7109                             </clade>\r
7110                             <clade>\r
7111                               <taxonomy>\r
7112                                 <id provider="uniprot">446</id>\r
7113                                 <code>LEGPN</code>\r
7114                                 <scientific_name>Legionella pneumophila</scientific_name>\r
7115                                 <rank>species</rank>\r
7116                               </taxonomy>\r
7117                             </clade>\r
7118                           </clade>\r
7119                           <clade>\r
7120                             <name>b_50</name>\r
7121                             <taxonomy>\r
7122                               <id provider="uniprot">32033</id>\r
7123                               <scientific_name>Xanthomonadaceae</scientific_name>\r
7124                               <rank>family</rank>\r
7125                             </taxonomy>\r
7126                             <clade>\r
7127                               <taxonomy>\r
7128                                 <id provider="uniprot">190486</id>\r
7129                                 <code>XANAC</code>\r
7130                                 <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>\r
7131                                 <synonym>Xanthomonas citri pv. citri str. 306</synonym>\r
7132                               </taxonomy>\r
7133                             </clade>\r
7134                             <clade>\r
7135                               <taxonomy>\r
7136                                 <id provider="uniprot">183190</id>\r
7137                                 <code>XYLFT</code>\r
7138                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
7139                               </taxonomy>\r
7140                             </clade>\r
7141                           </clade>\r
7142                         </clade>\r
7143                       </clade>\r
7144                       <clade>\r
7145                         <name>b_71</name>\r
7146                         <taxonomy>\r
7147                           <id provider="uniprot">28211</id>\r
7148                           <scientific_name>Alphaproteobacteria</scientific_name>\r
7149                           <rank>class</rank>\r
7150                         </taxonomy>\r
7151                         <clade>\r
7152                           <name>b_67</name>\r
7153                           <clade>\r
7154                             <name>b_65</name>\r
7155                             <clade>\r
7156                               <name>b_61</name>\r
7157                               <taxonomy>\r
7158                                 <id provider="uniprot">356</id>\r
7159                                 <scientific_name>Rhizobiales</scientific_name>\r
7160                                 <rank>order</rank>\r
7161                               </taxonomy>\r
7162                               <clade>\r
7163                                 <name>b_57</name>\r
7164                                 <taxonomy>\r
7165                                   <id provider="uniprot">227290</id>\r
7166                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
7167                                 </taxonomy>\r
7168                                 <clade>\r
7169                                   <taxonomy>\r
7170                                     <id provider="uniprot">176299</id>\r
7171                                     <code>AGRT5</code>\r
7172                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
7173                                   </taxonomy>\r
7174                                 </clade>\r
7175                                 <clade>\r
7176                                   <taxonomy>\r
7177                                     <id provider="uniprot">347834</id>\r
7178                                     <code>RHIEC</code>\r
7179                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
7180                                   </taxonomy>\r
7181                                 </clade>\r
7182                               </clade>\r
7183                               <clade>\r
7184                                 <name>b_60</name>\r
7185                                 <taxonomy>\r
7186                                   <id provider="uniprot">41294</id>\r
7187                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
7188                                   <rank>family</rank>\r
7189                                 </taxonomy>\r
7190                                 <clade>\r
7191                                   <taxonomy>\r
7192                                     <id provider="uniprot">375</id>\r
7193                                     <code>BRAJA</code>\r
7194                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
7195                                     <rank>species</rank>\r
7196                                   </taxonomy>\r
7197                                 </clade>\r
7198                                 <clade>\r
7199                                   <taxonomy>\r
7200                                     <id provider="uniprot">395960</id>\r
7201                                     <code>RHOPT</code>\r
7202                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
7203                                   </taxonomy>\r
7204                                 </clade>\r
7205                               </clade>\r
7206                             </clade>\r
7207                             <clade>\r
7208                               <name>b_64</name>\r
7209                               <taxonomy>\r
7210                                 <id provider="uniprot">31989</id>\r
7211                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
7212                                 <rank>family</rank>\r
7213                               </taxonomy>\r
7214                               <clade>\r
7215                                 <taxonomy>\r
7216                                   <id provider="uniprot">349101</id>\r
7217                                   <code>RHOS1</code>\r
7218                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
7219                                 </taxonomy>\r
7220                               </clade>\r
7221                               <clade>\r
7222                                 <taxonomy>\r
7223                                   <id provider="uniprot">375451</id>\r
7224                                   <code>ROSDO</code>\r
7225                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
7226                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
7227                                   <synonym>Roseobacter denitrificans</synonym>\r
7228                                 </taxonomy>\r
7229                               </clade>\r
7230                             </clade>\r
7231                           </clade>\r
7232                           <clade>\r
7233                             <taxonomy>\r
7234                               <id provider="uniprot">155892</id>\r
7235                               <code>CAUCR</code>\r
7236                               <scientific_name>Caulobacter crescentus</scientific_name>\r
7237                               <synonym>Caulobacter vibrioides</synonym>\r
7238                               <rank>species</rank>\r
7239                             </taxonomy>\r
7240                           </clade>\r
7241                         </clade>\r
7242                         <clade>\r
7243                           <name>b_70</name>\r
7244                           <taxonomy>\r
7245                             <id provider="uniprot">204441</id>\r
7246                             <scientific_name>Rhodospirillales</scientific_name>\r
7247                             <rank>order</rank>\r
7248                           </taxonomy>\r
7249                           <clade>\r
7250                             <taxonomy>\r
7251                               <id provider="uniprot">524</id>\r
7252                               <code>ACICY</code>\r
7253                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
7254                               <rank>species</rank>\r
7255                             </taxonomy>\r
7256                           </clade>\r
7257                           <clade>\r
7258                             <taxonomy>\r
7259                               <id provider="uniprot">1085</id>\r
7260                               <code>RHORU</code>\r
7261                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
7262                               <rank>species</rank>\r
7263                             </taxonomy>\r
7264                           </clade>\r
7265                         </clade>\r
7266                       </clade>\r
7267                     </clade>\r
7268                     <clade>\r
7269                       <name>b_79</name>\r
7270                       <clade>\r
7271                         <name>b_77</name>\r
7272                         <taxonomy>\r
7273                           <id provider="uniprot">1224</id>\r
7274                           <scientific_name>Proteobacteria</scientific_name>\r
7275                           <rank>phylum</rank>\r
7276                         </taxonomy>\r
7277                         <clade>\r
7278                           <name>b_75</name>\r
7279                           <taxonomy>\r
7280                             <id provider="uniprot">712</id>\r
7281                             <scientific_name>Pasteurellaceae</scientific_name>\r
7282                             <rank>family</rank>\r
7283                           </taxonomy>\r
7284                           <clade>\r
7285                             <taxonomy>\r
7286                               <id provider="uniprot">727</id>\r
7287                               <code>HAEIN</code>\r
7288                               <scientific_name>Haemophilus influenzae</scientific_name>\r
7289                               <rank>species</rank>\r
7290                             </taxonomy>\r
7291                           </clade>\r
7292                           <clade>\r
7293                             <taxonomy>\r
7294                               <id provider="uniprot">747</id>\r
7295                               <code>PASMU</code>\r
7296                               <scientific_name>Pasteurella multocida</scientific_name>\r
7297                               <rank>species</rank>\r
7298                             </taxonomy>\r
7299                           </clade>\r
7300                         </clade>\r
7301                         <clade>\r
7302                           <taxonomy>\r
7303                             <id provider="uniprot">487</id>\r
7304                             <code>NEIME</code>\r
7305                             <scientific_name>Neisseria meningitidis</scientific_name>\r
7306                             <rank>species</rank>\r
7307                           </taxonomy>\r
7308                         </clade>\r
7309                       </clade>\r
7310                       <clade>\r
7311                         <taxonomy>\r
7312                           <id provider="uniprot">905</id>\r
7313                           <code>ACIFE</code>\r
7314                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
7315                           <rank>species</rank>\r
7316                         </taxonomy>\r
7317                       </clade>\r
7318                     </clade>\r
7319                   </clade>\r
7320                   <clade>\r
7321                     <name>b_103</name>\r
7322                     <clade>\r
7323                       <name>b_91</name>\r
7324                       <taxonomy>\r
7325                         <id provider="uniprot">28221</id>\r
7326                         <scientific_name>Deltaproteobacteria</scientific_name>\r
7327                         <rank>class</rank>\r
7328                       </taxonomy>\r
7329                       <clade>\r
7330                         <name>b_87</name>\r
7331                         <clade>\r
7332                           <name>b_83</name>\r
7333                           <clade>\r
7334                             <taxonomy>\r
7335                               <id provider="uniprot">84980</id>\r
7336                               <code>DESPS</code>\r
7337                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
7338                               <rank>species</rank>\r
7339                             </taxonomy>\r
7340                           </clade>\r
7341                           <clade>\r
7342                             <taxonomy>\r
7343                               <id provider="uniprot">876</id>\r
7344                               <code>DESDE</code>\r
7345                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
7346                               <rank>species</rank>\r
7347                             </taxonomy>\r
7348                           </clade>\r
7349                         </clade>\r
7350                         <clade>\r
7351                           <taxonomy>\r
7352                             <id provider="uniprot">56780</id>\r
7353                             <code>SYNAS</code>\r
7354                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
7355                           </taxonomy>\r
7356                         </clade>\r
7357                       </clade>\r
7358                       <clade>\r
7359                         <name>b_90</name>\r
7360                         <taxonomy>\r
7361                           <id provider="uniprot">28231</id>\r
7362                           <scientific_name>Geobacter</scientific_name>\r
7363                           <rank>genus</rank>\r
7364                         </taxonomy>\r
7365                         <clade>\r
7366                           <taxonomy>\r
7367                             <id provider="uniprot">28232</id>\r
7368                             <code>GEOME</code>\r
7369                             <scientific_name>Geobacter metallireducens</scientific_name>\r
7370                             <rank>species</rank>\r
7371                           </taxonomy>\r
7372                         </clade>\r
7373                         <clade>\r
7374                           <taxonomy>\r
7375                             <id provider="uniprot">35554</id>\r
7376                             <code>GEOSL</code>\r
7377                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
7378                             <rank>species</rank>\r
7379                           </taxonomy>\r
7380                         </clade>\r
7381                       </clade>\r
7382                     </clade>\r
7383                     <clade>\r
7384                       <name>b_102</name>\r
7385                       <clade>\r
7386                         <name>b_98</name>\r
7387                         <clade>\r
7388                           <name>b_94</name>\r
7389                           <taxonomy>\r
7390                             <id provider="uniprot">31</id>\r
7391                             <scientific_name>Myxococcaceae</scientific_name>\r
7392                             <rank>family</rank>\r
7393                           </taxonomy>\r
7394                           <clade>\r
7395                             <taxonomy>\r
7396                               <id provider="uniprot">290397</id>\r
7397                               <code>ANADE</code>\r
7398                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
7399                             </taxonomy>\r
7400                           </clade>\r
7401                           <clade>\r
7402                             <taxonomy>\r
7403                               <id provider="uniprot">34</id>\r
7404                               <code>MYXXA</code>\r
7405                               <scientific_name>Myxococcus xanthus</scientific_name>\r
7406                               <rank>species</rank>\r
7407                             </taxonomy>\r
7408                           </clade>\r
7409                         </clade>\r
7410                         <clade>\r
7411                           <name>b_97</name>\r
7412                           <taxonomy>\r
7413                             <id provider="uniprot">57723</id>\r
7414                             <scientific_name>Acidobacteria</scientific_name>\r
7415                             <rank>phylum</rank>\r
7416                           </taxonomy>\r
7417                           <clade>\r
7418                             <taxonomy>\r
7419                               <id provider="uniprot">204669</id>\r
7420                               <code>KORVE</code>\r
7421                               <scientific_name>Koribacter versatilis (strain Ellin345)</scientific_name>\r
7422                               <synonym>Acidobacteria bacterium Ellin345</synonym>\r
7423                               <synonym>Candidatus Koribacter versatilis Ellin345</synonym>\r
7424                             </taxonomy>\r
7425                           </clade>\r
7426                           <clade>\r
7427                             <taxonomy>\r
7428                               <id provider="uniprot">332163</id>\r
7429                               <code>SOLUS</code>\r
7430                               <scientific_name>Solibacter usitatus</scientific_name>\r
7431                               <rank>species</rank>\r
7432                             </taxonomy>\r
7433                           </clade>\r
7434                         </clade>\r
7435                       </clade>\r
7436                       <clade>\r
7437                         <taxonomy>\r
7438                           <id provider="uniprot">265606</id>\r
7439                           <code>RHOBA</code>\r
7440                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
7441                           <rank>species</rank>\r
7442                         </taxonomy>\r
7443                       </clade>\r
7444                     </clade>\r
7445                   </clade>\r
7446                 </clade>\r
7447                 <clade>\r
7448                   <name>b_193</name>\r
7449                   <clade>\r
7450                     <name>b_163</name>\r
7451                     <clade>\r
7452                       <name>b_133</name>\r
7453                       <clade>\r
7454                         <name>Chloroflexi &amp; Actinobacteria</name>\r
7455                         <clade>\r
7456                           <taxonomy>\r
7457                             <id provider="uniprot">201174</id>\r
7458                             <scientific_name>Actinobacteria</scientific_name>\r
7459                             <rank>phylum</rank>\r
7460                           </taxonomy>\r
7461                           <clade>\r
7462                             <taxonomy>\r
7463                               <id provider="uniprot">2037</id>\r
7464                               <scientific_name>Actinomycetales</scientific_name>\r
7465                               <rank>order</rank>\r
7466                             </taxonomy>\r
7467                             <clade>\r
7468                               <name>b_115</name>\r
7469                               <clade>\r
7470                                 <taxonomy>\r
7471                                   <id provider="uniprot">266940</id>\r
7472                                   <code>KINRD</code>\r
7473                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
7474                                 </taxonomy>\r
7475                               </clade>\r
7476                               <clade>\r
7477                                 <taxonomy>\r
7478                                   <id provider="uniprot">378753</id>\r
7479                                   <code>KOCRD</code>\r
7480                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>\r
7481                                 </taxonomy>\r
7482                               </clade>\r
7483                               <clade>\r
7484                                 <taxonomy>\r
7485                                   <id provider="uniprot">1032480</id>\r
7486                                   <code>MICPN</code>\r
7487                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
7488                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
7489                                   <rank>strain</rank>\r
7490                                 </taxonomy>\r
7491                               </clade>\r
7492                               <clade>\r
7493                                 <taxonomy>\r
7494                                   <id provider="uniprot">1902</id>\r
7495                                   <code>STRCO</code>\r
7496                                   <scientific_name>Streptomyces coelicolor</scientific_name>\r
7497                                   <rank>species</rank>\r
7498                                 </taxonomy>\r
7499                               </clade>\r
7500                               <clade>\r
7501                                 <taxonomy>\r
7502                                   <id provider="uniprot">269800</id>\r
7503                                   <code>THEFY</code>\r
7504                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>\r
7505                                 </taxonomy>\r
7506                               </clade>\r
7507                             </clade>\r
7508                             <clade>\r
7509                               <taxonomy>\r
7510                                 <id provider="uniprot">85007</id>\r
7511                                 <scientific_name>Corynebacterineae</scientific_name>\r
7512                                 <rank>suborder</rank>\r
7513                               </taxonomy>\r
7514                               <clade>\r
7515                                 <taxonomy>\r
7516                                   <id provider="uniprot">1763</id>\r
7517                                   <scientific_name>Mycobacterium</scientific_name>\r
7518                                   <rank>genus</rank>\r
7519                                 </taxonomy>\r
7520                                 <clade>\r
7521                                   <taxonomy>\r
7522                                     <id provider="uniprot">1769</id>\r
7523                                     <code>MYCLE</code>\r
7524                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
7525                                     <rank>species</rank>\r
7526                                   </taxonomy>\r
7527                                 </clade>\r
7528                                 <clade>\r
7529                                   <taxonomy>\r
7530                                     <id provider="uniprot">1773</id>\r
7531                                     <code>MYCTU</code>\r
7532                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
7533                                     <rank>species</rank>\r
7534                                   </taxonomy>\r
7535                                 </clade>\r
7536                               </clade>\r
7537                               <clade>\r
7538                                 <taxonomy>\r
7539                                   <id provider="uniprot">306537</id>\r
7540                                   <code>CORJK</code>\r
7541                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>\r
7542                                 </taxonomy>\r
7543                               </clade>\r
7544                               <clade>\r
7545                                 <taxonomy>\r
7546                                   <id provider="uniprot">632772</id>\r
7547                                   <code>RHOOB</code>\r
7548                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
7549                                   <rank>strain</rank>\r
7550                                 </taxonomy>\r
7551                               </clade>\r
7552                             </clade>\r
7553                           </clade>\r
7554                           <clade>\r
7555                             <taxonomy>\r
7556                               <id provider="uniprot">266117</id>\r
7557                               <code>RUBXD</code>\r
7558                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
7559                             </taxonomy>\r
7560                           </clade>\r
7561                         </clade>\r
7562                         <clade>\r
7563                           <taxonomy>\r
7564                             <id provider="uniprot">200795</id>\r
7565                             <scientific_name>Chloroflexi</scientific_name>\r
7566                             <common_name>GNS bacteria</common_name>\r
7567                             <synonym>Thermomicrobia</synonym>\r
7568                             <rank>phylum</rank>\r
7569                           </taxonomy>\r
7570                           <clade>\r
7571                             <taxonomy>\r
7572                               <id provider="uniprot">32061</id>\r
7573                               <scientific_name>Chloroflexi (class)</scientific_name>\r
7574                               <synonym>Chloroflecales</synonym>\r
7575                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
7576                               <rank>class</rank>\r
7577                             </taxonomy>\r
7578                             <clade>\r
7579                               <taxonomy>\r
7580                                 <id provider="uniprot">1106</id>\r
7581                                 <scientific_name>Chloroflexaceae</scientific_name>\r
7582                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
7583                                 <rank>family</rank>\r
7584                               </taxonomy>\r
7585                               <clade>\r
7586                                 <taxonomy>\r
7587                                   <id provider="uniprot">1108</id>\r
7588                                   <code>CHLAU</code>\r
7589                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
7590                                   <rank>species</rank>\r
7591                                 </taxonomy>\r
7592                               </clade>\r
7593                               <clade>\r
7594                                 <taxonomy>\r
7595                                   <id provider="uniprot">383372</id>\r
7596                                   <code>ROSCS</code>\r
7597                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
7598                                   <rank>species</rank>\r
7599                                 </taxonomy>\r
7600                               </clade>\r
7601                             </clade>\r
7602                             <clade>\r
7603                               <taxonomy>\r
7604                                 <id provider="uniprot">65</id>\r
7605                                 <code>HERAU</code>\r
7606                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
7607                                 <synonym>Herpetosiphon giganteus</synonym>\r
7608                                 <rank>species</rank>\r
7609                               </taxonomy>\r
7610                             </clade>\r
7611                           </clade>\r
7612                           <clade>\r
7613                             <taxonomy>\r
7614                               <id provider="uniprot">479434</id>\r
7615                               <code>SPHTD</code>\r
7616                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
7617                               <rank>strain</rank>\r
7618                             </taxonomy>\r
7619                           </clade>\r
7620                         </clade>\r
7621                       </clade>\r
7622                       <clade>\r
7623                         <name>b_132</name>\r
7624                         <taxonomy>\r
7625                           <id provider="uniprot">188787</id>\r
7626                           <scientific_name>Deinococci</scientific_name>\r
7627                           <rank>class</rank>\r
7628                         </taxonomy>\r
7629                         <clade>\r
7630                           <taxonomy>\r
7631                             <id provider="uniprot">1298</id>\r
7632                             <scientific_name>Deinococcus</scientific_name>\r
7633                             <rank>genus</rank>\r
7634                           </taxonomy>\r
7635                           <clade>\r
7636                             <taxonomy>\r
7637                               <id provider="uniprot">319795</id>\r
7638                               <code>DEIGD</code>\r
7639                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
7640                             </taxonomy>\r
7641                           </clade>\r
7642                           <clade>\r
7643                             <taxonomy>\r
7644                               <id provider="uniprot">1299</id>\r
7645                               <code>DEIRA</code>\r
7646                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
7647                               <rank>species</rank>\r
7648                             </taxonomy>\r
7649                           </clade>\r
7650                         </clade>\r
7651                         <clade>\r
7652                           <taxonomy>\r
7653                             <id provider="uniprot">300852</id>\r
7654                             <code>THET8</code>\r
7655                             <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>\r
7656                             <rank>strain</rank>\r
7657                           </taxonomy>\r
7658                         </clade>\r
7659                       </clade>\r
7660                     </clade>\r
7661                     <clade>\r
7662                       <name>b_162</name>\r
7663                       <taxonomy>\r
7664                         <id provider="uniprot">1117</id>\r
7665                         <scientific_name>Cyanobacteria</scientific_name>\r
7666                         <rank>phylum</rank>\r
7667                       </taxonomy>\r
7668                       <clade>\r
7669                         <name>b_154</name>\r
7670                         <clade>\r
7671                           <name>b_152</name>\r
7672                           <clade>\r
7673                             <name>b_146</name>\r
7674                             <clade>\r
7675                               <name>b_144</name>\r
7676                               <clade>\r
7677                                 <name>b_142</name>\r
7678                                 <clade>\r
7679                                   <name>b_138</name>\r
7680                                   <taxonomy>\r
7681                                     <id provider="uniprot">1162</id>\r
7682                                     <scientific_name>Nostocaceae</scientific_name>\r
7683                                     <rank>family</rank>\r
7684                                   </taxonomy>\r
7685                                   <clade>\r
7686                                     <name>b_136</name>\r
7687                                     <clade>\r
7688                                       <taxonomy>\r
7689                                         <id provider="uniprot">240292</id>\r
7690                                         <code>ANAVT</code>\r
7691                                         <scientific_name>Anabaena variabilis (strain ATCC 29413 / PCC 7937)</scientific_name>\r
7692                                         <synonym>Anabaena flos-aquae (strain IUCC 1444)</synonym>\r
7693                                         <rank>strain</rank>\r
7694                                       </taxonomy>\r
7695                                     </clade>\r
7696                                     <clade>\r
7697                                       <taxonomy>\r
7698                                         <id provider="uniprot">28072</id>\r
7699                                         <code>NOSS7</code>\r
7700                                         <scientific_name>Nostoc sp. (strain ATCC 29411 / PCC 7524)</scientific_name>\r
7701                                         <rank>species</rank>\r
7702                                       </taxonomy>\r
7703                                     </clade>\r
7704                                   </clade>\r
7705                                   <clade>\r
7706                                     <taxonomy>\r
7707                                       <id provider="uniprot">63737</id>\r
7708                                       <code>NOSP7</code>\r
7709                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
7710                                       <rank>strain</rank>\r
7711                                     </taxonomy>\r
7712                                   </clade>\r
7713                                 </clade>\r
7714                                 <clade>\r
7715                                   <taxonomy>\r
7716                                     <id provider="uniprot">329726</id>\r
7717                                     <code>ACAM1</code>\r
7718                                     <scientific_name>Acaryochloris marina (strain MBIC 11017</scientific_name>\r
7719                                     <rank>strain</rank>\r
7720                                   </taxonomy>\r
7721                                 </clade>\r
7722                               </clade>\r
7723                               <clade>\r
7724                                 <taxonomy>\r
7725                                   <id provider="uniprot">449447</id>\r
7726                                   <code>MICAN</code>\r
7727                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
7728                                 </taxonomy>\r
7729                               </clade>\r
7730                             </clade>\r
7731                             <clade>\r
7732                               <taxonomy>\r
7733                                 <id provider="uniprot">1206</id>\r
7734                                 <code>TRIER</code>\r
7735                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
7736                                 <rank>species</rank>\r
7737                               </taxonomy>\r
7738                             </clade>\r
7739                           </clade>\r
7740                           <clade>\r
7741                             <taxonomy>\r
7742                               <id provider="uniprot">1118</id>\r
7743                               <scientific_name>Chroococcales</scientific_name>\r
7744                               <rank>order</rank>\r
7745                             </taxonomy>\r
7746                             <clade>\r
7747                               <taxonomy>\r
7748                                 <id provider="uniprot">32046</id>\r
7749                                 <code>SYNEL</code>\r
7750                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
7751                                 <rank>species</rank>\r
7752                               </taxonomy>\r
7753                             </clade>\r
7754                             <clade>\r
7755                               <taxonomy>\r
7756                                 <id provider="uniprot">1111708</id>\r
7757                                 <code>SYNY3</code>\r
7758                                 <scientific_name>Synechocystis sp. (strain PCC 6803 / Kazusa)</scientific_name>\r
7759                               </taxonomy>\r
7760                             </clade>\r
7761                           </clade>\r
7762                         </clade>\r
7763                         <clade>\r
7764                           <taxonomy>\r
7765                             <id provider="uniprot">33072</id>\r
7766                             <code>GLOVI</code>\r
7767                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
7768                             <rank>species</rank>\r
7769                           </taxonomy>\r
7770                         </clade>\r
7771                       </clade>\r
7772                       <clade>\r
7773                         <name>b_161</name>\r
7774                         <clade>\r
7775                           <name>b_159</name>\r
7776                           <taxonomy>\r
7777                             <id provider="uniprot">1218</id>\r
7778                             <scientific_name>Prochlorococcus</scientific_name>\r
7779                             <rank>genus</rank>\r
7780                           </taxonomy>\r
7781                           <clade>\r
7782                             <name>b_157</name>\r
7783                             <clade>\r
7784                               <taxonomy>\r
7785                                 <id provider="uniprot">1219</id>\r
7786                                 <code>PROMA</code>\r
7787                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
7788                                 <rank>species</rank>\r
7789                               </taxonomy>\r
7790                             </clade>\r
7791                             <clade>\r
7792                               <taxonomy>\r
7793                                 <id provider="uniprot">59919</id>\r
7794                                 <code>PROMP</code>\r
7795                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
7796                               </taxonomy>\r
7797                             </clade>\r
7798                           </clade>\r
7799                           <clade>\r
7800                             <taxonomy>\r
7801                               <id provider="uniprot">74547</id>\r
7802                               <code>PROMM</code>\r
7803                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
7804                             </taxonomy>\r
7805                           </clade>\r
7806                         </clade>\r
7807                         <clade>\r
7808                           <taxonomy>\r
7809                             <id provider="uniprot">64471</id>\r
7810                             <code>SYNS3</code>\r
7811                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
7812                             <rank>species</rank>\r
7813                           </taxonomy>\r
7814                         </clade>\r
7815                       </clade>\r
7816                     </clade>\r
7817                   </clade>\r
7818                   <clade>\r
7819                     <name>b_192</name>\r
7820                     <clade>\r
7821                       <name>b_190</name>\r
7822                       <clade>\r
7823                         <name>b_178</name>\r
7824                         <clade>\r
7825                           <name>b_176</name>\r
7826                           <taxonomy>\r
7827                             <id provider="uniprot">191412</id>\r
7828                             <scientific_name>Chlorobiaceae</scientific_name>\r
7829                             <rank>family</rank>\r
7830                           </taxonomy>\r
7831                           <clade>\r
7832                             <name>b_170</name>\r
7833                             <clade>\r
7834                               <name>b_166</name>\r
7835                               <clade>\r
7836                                 <taxonomy>\r
7837                                   <id provider="uniprot">331678</id>\r
7838                                   <code>CHLPB</code>\r
7839                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
7840                                 </taxonomy>\r
7841                               </clade>\r
7842                               <clade>\r
7843                                 <taxonomy>\r
7844                                   <id provider="uniprot">1102</id>\r
7845                                   <code>PROAE</code>\r
7846                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
7847                                   <rank>species</rank>\r
7848                                 </taxonomy>\r
7849                               </clade>\r
7850                             </clade>\r
7851                             <clade>\r
7852                               <name>b_169</name>\r
7853                               <taxonomy>\r
7854                                 <id provider="uniprot">274493</id>\r
7855                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
7856                               </taxonomy>\r
7857                               <clade>\r
7858                                 <taxonomy>\r
7859                                   <id provider="uniprot">1100</id>\r
7860                                   <code>PELLU</code>\r
7861                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
7862                                   <rank>species</rank>\r
7863                                 </taxonomy>\r
7864                               </clade>\r
7865                               <clade>\r
7866                                 <taxonomy>\r
7867                                   <id provider="uniprot">290318</id>\r
7868                                   <code>PROVI</code>\r
7869                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
7870                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
7871                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
7872                                 </taxonomy>\r
7873                               </clade>\r
7874                             </clade>\r
7875                           </clade>\r
7876                           <clade>\r
7877                             <name>b_175</name>\r
7878                             <clade>\r
7879                               <taxonomy>\r
7880                                 <id provider="uniprot">256319</id>\r
7881                                 <scientific_name>Chlorobaculum</scientific_name>\r
7882                                 <rank>genus</rank>\r
7883                               </taxonomy>\r
7884                               <clade>\r
7885                                 <taxonomy>\r
7886                                   <id provider="uniprot">517417</id>\r
7887                                   <code>CHLP8</code>\r
7888                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
7889                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
7890                                 </taxonomy>\r
7891                               </clade>\r
7892                               <clade>\r
7893                                 <taxonomy>\r
7894                                   <id provider="uniprot">1097</id>\r
7895                                   <code>CHLTE</code>\r
7896                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
7897                                   <rank>species</rank>\r
7898                                 </taxonomy>\r
7899                               </clade>\r
7900                             </clade>\r
7901                             <clade>\r
7902                               <taxonomy>\r
7903                                 <id provider="uniprot">340177</id>\r
7904                                 <code>CHLCH</code>\r
7905                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
7906                               </taxonomy>\r
7907                             </clade>\r
7908                           </clade>\r
7909                         </clade>\r
7910                         <clade>\r
7911                           <taxonomy>\r
7912                             <id provider="uniprot">315277</id>\r
7913                             <code>CHLTA</code>\r
7914                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
7915                           </taxonomy>\r
7916                         </clade>\r
7917                       </clade>\r
7918                       <clade>\r
7919                         <name>b_189</name>\r
7920                         <taxonomy>\r
7921                           <id provider="uniprot">976</id>\r
7922                           <scientific_name>Bacteroidetes</scientific_name>\r
7923                           <rank>phylum</rank>\r
7924                         </taxonomy>\r
7925                         <clade>\r
7926                           <name>b_183</name>\r
7927                           <clade>\r
7928                             <name>b_181</name>\r
7929                             <taxonomy>\r
7930                               <id provider="uniprot">49546</id>\r
7931                               <scientific_name>Flavobacteriaceae</scientific_name>\r
7932                               <rank>family</rank>\r
7933                             </taxonomy>\r
7934                             <clade>\r
7935                               <taxonomy>\r
7936                                 <id provider="uniprot">986</id>\r
7937                                 <code>FLAJO</code>\r
7938                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
7939                                 <synonym>Cytophaga johnsonae</synonym>\r
7940                                 <rank>species</rank>\r
7941                               </taxonomy>\r
7942                             </clade>\r
7943                             <clade>\r
7944                               <taxonomy>\r
7945                                 <id provider="uniprot">411154</id>\r
7946                                 <code>GRAFK</code>\r
7947                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
7948                               </taxonomy>\r
7949                             </clade>\r
7950                           </clade>\r
7951                           <clade>\r
7952                             <taxonomy>\r
7953                               <id provider="uniprot">269798</id>\r
7954                               <code>CYTH3</code>\r
7955                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
7956                             </taxonomy>\r
7957                           </clade>\r
7958                         </clade>\r
7959                         <clade>\r
7960                           <name>b_188</name>\r
7961                           <taxonomy>\r
7962                             <id provider="uniprot">171549</id>\r
7963                             <scientific_name>Bacteroidales</scientific_name>\r
7964                             <rank>order</rank>\r
7965                           </taxonomy>\r
7966                           <clade>\r
7967                             <name>b_186</name>\r
7968                             <taxonomy>\r
7969                               <id provider="uniprot">816</id>\r
7970                               <scientific_name>Bacteroides</scientific_name>\r
7971                               <rank>genus</rank>\r
7972                             </taxonomy>\r
7973                             <clade>\r
7974                               <taxonomy>\r
7975                                 <id provider="uniprot">817</id>\r
7976                                 <code>BACFR</code>\r
7977                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
7978                                 <rank>species</rank>\r
7979                               </taxonomy>\r
7980                             </clade>\r
7981                             <clade>\r
7982                               <taxonomy>\r
7983                                 <id provider="uniprot">818</id>\r
7984                                 <code>BACTN</code>\r
7985                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
7986                                 <rank>species</rank>\r
7987                               </taxonomy>\r
7988                             </clade>\r
7989                           </clade>\r
7990                           <clade>\r
7991                             <taxonomy>\r
7992                               <id provider="uniprot">837</id>\r
7993                               <code>PORGI</code>\r
7994                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
7995                               <synonym>Bacteroides gingivalis</synonym>\r
7996                               <rank>species</rank>\r
7997                             </taxonomy>\r
7998                           </clade>\r
7999                         </clade>\r
8000                       </clade>\r
8001                     </clade>\r
8002                     <clade>\r
8003                       <taxonomy>\r
8004                         <id provider="uniprot">309807</id>\r
8005                         <code>SALRD</code>\r
8006                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
8007                       </taxonomy>\r
8008                     </clade>\r
8009                   </clade>\r
8010                 </clade>\r
8011               </clade>\r
8012               <clade>\r
8013                 <name>b_199</name>\r
8014                 <clade>\r
8015                   <name>b_197</name>\r
8016                   <taxonomy>\r
8017                     <scientific_name>Verrucomicrobia</scientific_name>\r
8018                   </taxonomy>\r
8019                   <clade>\r
8020                     <taxonomy>\r
8021                       <id provider="uniprot">349741</id>\r
8022                       <code>AKKM8</code>\r
8023                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
8024                     </taxonomy>\r
8025                   </clade>\r
8026                   <clade>\r
8027                     <taxonomy>\r
8028                       <id provider="uniprot">481448</id>\r
8029                       <code>METI4</code>\r
8030                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
8031                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
8032                     </taxonomy>\r
8033                   </clade>\r
8034                 </clade>\r
8035                 <clade>\r
8036                   <taxonomy>\r
8037                     <id provider="uniprot">44275</id>\r
8038                     <code>LEPIC</code>\r
8039                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
8040                   </taxonomy>\r
8041                 </clade>\r
8042               </clade>\r
8043             </clade>\r
8044             <clade>\r
8045               <name>b_225</name>\r
8046               <clade>\r
8047                 <name>b_219</name>\r
8048                 <taxonomy>\r
8049                   <id provider="uniprot">1239</id>\r
8050                   <scientific_name>Firmicutes</scientific_name>\r
8051                   <rank>phylum</rank>\r
8052                 </taxonomy>\r
8053                 <clade>\r
8054                   <name>b_213</name>\r
8055                   <clade>\r
8056                     <taxonomy>\r
8057                       <id provider="uniprot">1385</id>\r
8058                       <scientific_name>Bacillales</scientific_name>\r
8059                       <rank>order</rank>\r
8060                     </taxonomy>\r
8061                     <clade>\r
8062                       <taxonomy>\r
8063                         <id provider="uniprot">186817</id>\r
8064                         <scientific_name>Bacillaceae</scientific_name>\r
8065                         <rank>family</rank>\r
8066                       </taxonomy>\r
8067                       <clade>\r
8068                         <taxonomy>\r
8069                           <id provider="uniprot">1386</id>\r
8070                           <scientific_name>Bacillus</scientific_name>\r
8071                           <rank>genus</rank>\r
8072                         </taxonomy>\r
8073                         <clade>\r
8074                           <taxonomy>\r
8075                             <id provider="uniprot">86661</id>\r
8076                             <scientific_name>Bacillus cereus group</scientific_name>\r
8077                           </taxonomy>\r
8078                           <clade>\r
8079                             <taxonomy>\r
8080                               <id provider="uniprot">1392</id>\r
8081                               <code>BACAN</code>\r
8082                               <scientific_name>Bacillus anthracis</scientific_name>\r
8083                               <rank>species</rank>\r
8084                             </taxonomy>\r
8085                           </clade>\r
8086                           <clade>\r
8087                             <taxonomy>\r
8088                               <id provider="uniprot">572264</id>\r
8089                               <code>BACC3</code>\r
8090                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
8091                               <rank>strain</rank>\r
8092                             </taxonomy>\r
8093                           </clade>\r
8094                         </clade>\r
8095                         <clade>\r
8096                           <taxonomy>\r
8097                             <id provider="uniprot">224308</id>\r
8098                             <code>BACSU</code>\r
8099                             <scientific_name>Bacillus subtilis (strain 168)</scientific_name>\r
8100                             <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>\r
8101                           </taxonomy>\r
8102                         </clade>\r
8103                       </clade>\r
8104                       <clade>\r
8105                         <name>b_206</name>\r
8106                         <clade>\r
8107                           <taxonomy>\r
8108                             <id provider="uniprot">86665</id>\r
8109                             <code>BACHD</code>\r
8110                             <scientific_name>Bacillus halodurans</scientific_name>\r
8111                             <rank>species</rank>\r
8112                           </taxonomy>\r
8113                         </clade>\r
8114                         <clade>\r
8115                           <taxonomy>\r
8116                             <id provider="uniprot">1462</id>\r
8117                             <code>GEOKA</code>\r
8118                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
8119                             <rank>species</rank>\r
8120                           </taxonomy>\r
8121                         </clade>\r
8122                       </clade>\r
8123                     </clade>\r
8124                     <clade>\r
8125                       <name>b_210</name>\r
8126                       <clade>\r
8127                         <taxonomy>\r
8128                           <id provider="uniprot">1639</id>\r
8129                           <code>LISMO</code>\r
8130                           <scientific_name>Listeria monocytogenes</scientific_name>\r
8131                           <rank>species</rank>\r
8132                         </taxonomy>\r
8133                       </clade>\r
8134                       <clade>\r
8135                         <taxonomy>\r
8136                           <id provider="uniprot">1280</id>\r
8137                           <code>STAAU</code>\r
8138                           <scientific_name>Staphylococcus aureus</scientific_name>\r
8139                           <rank>species</rank>\r
8140                         </taxonomy>\r
8141                       </clade>\r
8142                     </clade>\r
8143                   </clade>\r
8144                   <clade>\r
8145                     <taxonomy>\r
8146                       <id provider="uniprot">195103</id>\r
8147                       <code>CLOP1</code>\r
8148                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
8149                     </taxonomy>\r
8150                   </clade>\r
8151                 </clade>\r
8152                 <clade>\r
8153                   <name>Clostridia</name>\r
8154                   <taxonomy>\r
8155                     <id provider="uniprot">186801</id>\r
8156                     <scientific_name>Clostridia</scientific_name>\r
8157                     <rank>class</rank>\r
8158                   </taxonomy>\r
8159                   <clade>\r
8160                     <name>b_218</name>\r
8161                     <clade>\r
8162                       <name>b_216</name>\r
8163                       <taxonomy>\r
8164                         <id provider="uniprot">186814</id>\r
8165                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
8166                         <rank>family</rank>\r
8167                       </taxonomy>\r
8168                       <clade>\r
8169                         <taxonomy>\r
8170                           <id provider="uniprot">246194</id>\r
8171                           <code>CARHZ</code>\r
8172                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
8173                         </taxonomy>\r
8174                       </clade>\r
8175                       <clade>\r
8176                         <taxonomy>\r
8177                           <id provider="uniprot">119072</id>\r
8178                           <code>THETN</code>\r
8179                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
8180                           <rank>species</rank>\r
8181                         </taxonomy>\r
8182                       </clade>\r
8183                     </clade>\r
8184                     <clade>\r
8185                       <taxonomy>\r
8186                         <id provider="uniprot">49338</id>\r
8187                         <code>DESHA</code>\r
8188                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
8189                         <synonym>Desulfitobacterium frappieri</synonym>\r
8190                         <rank>species</rank>\r
8191                       </taxonomy>\r
8192                     </clade>\r
8193                   </clade>\r
8194                   <clade>\r
8195                     <taxonomy>\r
8196                       <id provider="uniprot">515619</id>\r
8197                       <code>EUBR3</code>\r
8198                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
8199                     </taxonomy>\r
8200                   </clade>\r
8201                 </clade>\r
8202               </clade>\r
8203               <clade>\r
8204                 <name>b_224</name>\r
8205                 <taxonomy>\r
8206                   <id provider="uniprot">188709</id>\r
8207                   <scientific_name>Thermotogaceae</scientific_name>\r
8208                   <rank>family</rank>\r
8209                 </taxonomy>\r
8210                 <clade>\r
8211                   <name>b_222</name>\r
8212                   <clade>\r
8213                     <taxonomy>\r
8214                       <id provider="uniprot">381764</id>\r
8215                       <code>FERNB</code>\r
8216                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
8217                     </taxonomy>\r
8218                   </clade>\r
8219                   <clade>\r
8220                     <taxonomy>\r
8221                       <id provider="uniprot">416591</id>\r
8222                       <code>THELT</code>\r
8223                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
8224                     </taxonomy>\r
8225                   </clade>\r
8226                 </clade>\r
8227                 <clade>\r
8228                   <taxonomy>\r
8229                     <id provider="uniprot">2336</id>\r
8230                     <code>THEMA</code>\r
8231                     <scientific_name>Thermotoga maritima</scientific_name>\r
8232                     <rank>species</rank>\r
8233                   </taxonomy>\r
8234                 </clade>\r
8235               </clade>\r
8236             </clade>\r
8237           </clade>\r
8238           <clade>\r
8239             <name>b_267</name>\r
8240             <clade>\r
8241               <name>b_263</name>\r
8242               <clade>\r
8243                 <name>b_251</name>\r
8244                 <clade>\r
8245                   <name>b_249</name>\r
8246                   <clade>\r
8247                     <name>b_245</name>\r
8248                     <clade>\r
8249                       <name>b_237</name>\r
8250                       <clade>\r
8251                         <name>b_233</name>\r
8252                         <taxonomy>\r
8253                           <id provider="uniprot">31969</id>\r
8254                           <scientific_name>Mollicutes</scientific_name>\r
8255                           <rank>class</rank>\r
8256                         </taxonomy>\r
8257                         <clade>\r
8258                           <name>b_231</name>\r
8259                           <clade>\r
8260                             <name>b_229</name>\r
8261                             <taxonomy>\r
8262                               <scientific_name>Mycoplasma</scientific_name>\r
8263                             </taxonomy>\r
8264                             <clade>\r
8265                               <taxonomy>\r
8266                                 <id provider="uniprot">2097</id>\r
8267                                 <code>MYCGE</code>\r
8268                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
8269                                 <rank>species</rank>\r
8270                               </taxonomy>\r
8271                             </clade>\r
8272                             <clade>\r
8273                               <taxonomy>\r
8274                                 <id provider="uniprot">2104</id>\r
8275                                 <code>MYCPN</code>\r
8276                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
8277                                 <rank>species</rank>\r
8278                               </taxonomy>\r
8279                             </clade>\r
8280                           </clade>\r
8281                           <clade>\r
8282                             <taxonomy>\r
8283                               <id provider="uniprot">2151</id>\r
8284                               <code>MESFL</code>\r
8285                               <scientific_name>Mesoplasma florum</scientific_name>\r
8286                               <synonym>Acholeplasma florum</synonym>\r
8287                               <rank>species</rank>\r
8288                             </taxonomy>\r
8289                           </clade>\r
8290                         </clade>\r
8291                         <clade>\r
8292                           <taxonomy>\r
8293                             <id provider="uniprot">134821</id>\r
8294                             <code>UREPA</code>\r
8295                             <scientific_name>Ureaplasma parvum</scientific_name>\r
8296                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
8297                             <rank>species</rank>\r
8298                           </taxonomy>\r
8299                         </clade>\r
8300                       </clade>\r
8301                       <clade>\r
8302                         <name>b_236</name>\r
8303                         <taxonomy>\r
8304                           <id provider="uniprot">137</id>\r
8305                           <scientific_name>Spirochaetaceae</scientific_name>\r
8306                           <rank>family</rank>\r
8307                         </taxonomy>\r
8308                         <clade>\r
8309                           <taxonomy>\r
8310                             <id provider="uniprot">139</id>\r
8311                             <code>BORBU</code>\r
8312                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
8313                             <common_name>Lyme disease spirochete</common_name>\r
8314                             <rank>species</rank>\r
8315                           </taxonomy>\r
8316                         </clade>\r
8317                         <clade>\r
8318                           <taxonomy>\r
8319                             <id provider="uniprot">160</id>\r
8320                             <code>TREPA</code>\r
8321                             <scientific_name>Treponema pallidum</scientific_name>\r
8322                             <rank>species</rank>\r
8323                           </taxonomy>\r
8324                         </clade>\r
8325                       </clade>\r
8326                     </clade>\r
8327                     <clade>\r
8328                       <name>b_244</name>\r
8329                       <clade>\r
8330                         <name>b_242</name>\r
8331                         <taxonomy>\r
8332                           <id provider="uniprot">1113537</id>\r
8333                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
8334                         </taxonomy>\r
8335                         <clade>\r
8336                           <name>b_240</name>\r
8337                           <clade>\r
8338                             <taxonomy>\r
8339                               <id provider="uniprot">83558</id>\r
8340                               <code>CHLPN</code>\r
8341                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
8342                               <synonym>Chlamydophila pneumoniae</synonym>\r
8343                               <rank>species</rank>\r
8344                             </taxonomy>\r
8345                           </clade>\r
8346                           <clade>\r
8347                             <taxonomy>\r
8348                               <id provider="uniprot">264202</id>\r
8349                               <code>CHLFF</code>\r
8350                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
8351                             </taxonomy>\r
8352                           </clade>\r
8353                         </clade>\r
8354                         <clade>\r
8355                           <taxonomy>\r
8356                             <id provider="uniprot">83560</id>\r
8357                             <code>CHLMU</code>\r
8358                             <scientific_name>Chlamydia muridarum</scientific_name>\r
8359                             <rank>species</rank>\r
8360                           </taxonomy>\r
8361                         </clade>\r
8362                       </clade>\r
8363                       <clade>\r
8364                         <taxonomy>\r
8365                           <id provider="uniprot">785</id>\r
8366                           <code>RICTY</code>\r
8367                           <scientific_name>Rickettsia typhi</scientific_name>\r
8368                           <rank>species</rank>\r
8369                         </taxonomy>\r
8370                       </clade>\r
8371                     </clade>\r
8372                   </clade>\r
8373                   <clade>\r
8374                     <taxonomy>\r
8375                       <id provider="uniprot">28211</id>\r
8376                       <scientific_name>Alphaproteobacteria</scientific_name>\r
8377                       <rank>class</rank>\r
8378                     </taxonomy>\r
8379                     <clade>\r
8380                       <taxonomy>\r
8381                         <id provider="uniprot">38323</id>\r
8382                         <code>BARHE</code>\r
8383                         <scientific_name>Bartonella henselae</scientific_name>\r
8384                         <synonym>Rochalimaea henselae</synonym>\r
8385                         <rank>species</rank>\r
8386                       </taxonomy>\r
8387                     </clade>\r
8388                     <clade>\r
8389                       <taxonomy>\r
8390                         <id provider="uniprot">198252</id>\r
8391                         <code>PELUB</code>\r
8392                         <scientific_name>Pelagibacter ubique</scientific_name>\r
8393                         <rank>species</rank>\r
8394                       </taxonomy>\r
8395                     </clade>\r
8396                     <clade>\r
8397                       <taxonomy>\r
8398                         <id provider="uniprot">780</id>\r
8399                         <scientific_name>Rickettsia</scientific_name>\r
8400                         <rank>genus</rank>\r
8401                       </taxonomy>\r
8402                       <clade>\r
8403                         <taxonomy>\r
8404                           <id provider="uniprot">391896</id>\r
8405                           <code>RICB8</code>\r
8406                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
8407                         </taxonomy>\r
8408                       </clade>\r
8409                       <clade>\r
8410                         <taxonomy>\r
8411                           <id provider="uniprot">452659</id>\r
8412                           <code>RICRO</code>\r
8413                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
8414                           <rank>strain</rank>\r
8415                         </taxonomy>\r
8416                       </clade>\r
8417                     </clade>\r
8418                   </clade>\r
8419                 </clade>\r
8420                 <clade>\r
8421                   <taxonomy>\r
8422                     <id provider="uniprot">263</id>\r
8423                     <code>FRATU</code>\r
8424                     <scientific_name>Francisella tularensis</scientific_name>\r
8425                     <rank>species</rank>\r
8426                   </taxonomy>\r
8427                 </clade>\r
8428               </clade>\r
8429               <clade>\r
8430                 <name>b_262</name>\r
8431                 <clade>\r
8432                   <name>b_260</name>\r
8433                   <clade>\r
8434                     <name>b_258</name>\r
8435                     <taxonomy>\r
8436                       <id provider="uniprot">186826</id>\r
8437                       <scientific_name>Lactobacillales</scientific_name>\r
8438                       <rank>order</rank>\r
8439                     </taxonomy>\r
8440                     <clade>\r
8441                       <name>b_256</name>\r
8442                       <taxonomy>\r
8443                         <id provider="uniprot">1300</id>\r
8444                         <scientific_name>Streptococcaceae</scientific_name>\r
8445                         <rank>family</rank>\r
8446                       </taxonomy>\r
8447                       <clade>\r
8448                         <name>b_254</name>\r
8449                         <taxonomy>\r
8450                           <id provider="uniprot">1301</id>\r
8451                           <scientific_name>Streptococcus</scientific_name>\r
8452                           <rank>genus</rank>\r
8453                         </taxonomy>\r
8454                         <clade>\r
8455                           <taxonomy>\r
8456                             <id provider="uniprot">1313</id>\r
8457                             <code>STRPN</code>\r
8458                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
8459                             <rank>species</rank>\r
8460                           </taxonomy>\r
8461                         </clade>\r
8462                         <clade>\r
8463                           <taxonomy>\r
8464                             <id provider="uniprot">1314</id>\r
8465                             <code>STRPY</code>\r
8466                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
8467                             <rank>species</rank>\r
8468                           </taxonomy>\r
8469                         </clade>\r
8470                       </clade>\r
8471                       <clade>\r
8472                         <taxonomy>\r
8473                           <id provider="uniprot">1360</id>\r
8474                           <code>LACLA</code>\r
8475                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
8476                           <synonym>Streptococcus lactis</synonym>\r
8477                           <rank>subspecies</rank>\r
8478                         </taxonomy>\r
8479                       </clade>\r
8480                     </clade>\r
8481                     <clade>\r
8482                       <taxonomy>\r
8483                         <id provider="uniprot">1579</id>\r
8484                         <code>LACAC</code>\r
8485                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
8486                         <rank>species</rank>\r
8487                       </taxonomy>\r
8488                     </clade>\r
8489                   </clade>\r
8490                   <clade>\r
8491                     <taxonomy>\r
8492                       <id provider="uniprot">216816</id>\r
8493                       <code>BIFLO</code>\r
8494                       <scientific_name>Bifidobacterium longum</scientific_name>\r
8495                       <rank>species</rank>\r
8496                     </taxonomy>\r
8497                   </clade>\r
8498                 </clade>\r
8499                 <clade>\r
8500                   <taxonomy>\r
8501                     <id provider="uniprot">851</id>\r
8502                     <code>FUSNU</code>\r
8503                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
8504                     <rank>species</rank>\r
8505                   </taxonomy>\r
8506                 </clade>\r
8507               </clade>\r
8508             </clade>\r
8509             <clade>\r
8510               <name>b_266</name>\r
8511               <taxonomy>\r
8512                 <id provider="uniprot">61434</id>\r
8513                 <scientific_name>Dehalococcoides</scientific_name>\r
8514                 <rank>genus</rank>\r
8515               </taxonomy>\r
8516               <clade>\r
8517                 <taxonomy>\r
8518                   <id provider="uniprot">243164</id>\r
8519                   <code>DEHE1</code>\r
8520                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
8521                 </taxonomy>\r
8522               </clade>\r
8523               <clade>\r
8524                 <taxonomy>\r
8525                   <id provider="uniprot">216389</id>\r
8526                   <code>DEHSB</code>\r
8527                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
8528                   <rank>species</rank>\r
8529                 </taxonomy>\r
8530               </clade>\r
8531             </clade>\r
8532           </clade>\r
8533         </clade>\r
8534         <clade>\r
8535           <name>b_277</name>\r
8536           <taxonomy>\r
8537             <id provider="uniprot">29547</id>\r
8538             <scientific_name>Epsilonproteobacteria</scientific_name>\r
8539             <rank>class</rank>\r
8540           </taxonomy>\r
8541           <clade>\r
8542             <name>b_273</name>\r
8543             <clade>\r
8544               <taxonomy>\r
8545                 <id provider="uniprot">387092</id>\r
8546                 <code>NITSB</code>\r
8547                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
8548                 <rank>species</rank>\r
8549               </taxonomy>\r
8550             </clade>\r
8551             <clade>\r
8552               <taxonomy>\r
8553                 <id provider="uniprot">387093</id>\r
8554                 <code>SULNB</code>\r
8555                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
8556                 <rank>species</rank>\r
8557               </taxonomy>\r
8558             </clade>\r
8559           </clade>\r
8560           <clade>\r
8561             <name>b_276</name>\r
8562             <taxonomy>\r
8563               <id provider="uniprot">213849</id>\r
8564               <scientific_name>Campylobacterales</scientific_name>\r
8565               <rank>order</rank>\r
8566             </taxonomy>\r
8567             <clade>\r
8568               <taxonomy>\r
8569                 <id provider="uniprot">197</id>\r
8570                 <code>CAMJE</code>\r
8571                 <scientific_name>Campylobacter jejuni</scientific_name>\r
8572                 <rank>species</rank>\r
8573               </taxonomy>\r
8574             </clade>\r
8575             <clade>\r
8576               <taxonomy>\r
8577                 <id provider="uniprot">357544</id>\r
8578                 <code>HELPH</code>\r
8579                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
8580               </taxonomy>\r
8581             </clade>\r
8582           </clade>\r
8583         </clade>\r
8584       </clade>\r
8585       <clade>\r
8586         <taxonomy>\r
8587           <id provider="uniprot">224324</id>\r
8588           <code>AQUAE</code>\r
8589           <scientific_name>Aquifex aeolicus (strain VF5)</scientific_name>\r
8590           <rank>strain</rank>\r
8591         </taxonomy>\r
8592       </clade>\r
8593     </clade>\r
8594   </clade>\r
8595 </phylogeny>\r
8596 </phyloxml>