RETFI added
[jalview.git] / forester / data / tol_156.xml
1 <?xml version="1.0" encoding="UTF-8"?>\r
2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
3 <phylogeny rooted="true" rerootable="false">\r
4   <name>tol_156</name>\r
5   <clade>\r
6     <taxonomy>\r
7       <id provider="uniprot">131567</id>\r
8       <scientific_name>cellular organisms</scientific_name>\r
9     </taxonomy>\r
10     <clade>\r
11       <taxonomy>\r
12         <scientific_name>Neomura</scientific_name>\r
13       </taxonomy>\r
14       <clade>\r
15         <taxonomy>\r
16           <id provider="uniprot">2759</id>\r
17           <scientific_name>Eukaryota</scientific_name>\r
18           <rank>superkingdom</rank>\r
19         </taxonomy>\r
20         <clade>\r
21           <name>Unikonta</name>\r
22           <clade>\r
23             <taxonomy>\r
24               <id provider="uniprot">33154</id>\r
25               <scientific_name>Opisthokonta</scientific_name>\r
26               <common_name>Fungi/Metazoa group</common_name>\r
27             </taxonomy>\r
28             <clade>\r
29               <taxonomy>\r
30                 <scientific_name>Holozoa</scientific_name>\r
31               </taxonomy>\r
32               <clade>\r
33                 <name>Choanoflagellatea &amp; Metazoa</name>\r
34                 <clade>\r
35                   <taxonomy>\r
36                     <id provider="uniprot">33208</id>\r
37                     <scientific_name>Metazoa</scientific_name>\r
38                     <rank>kingdom</rank>\r
39                   </taxonomy>\r
40                   <clade>\r
41                     <taxonomy>\r
42                       <id provider="uniprot">6072</id>\r
43                       <scientific_name>Eumetazoa</scientific_name>\r
44                     </taxonomy>\r
45                     <reference doi="10.1038/nature06614">\r
46                     </reference>\r
47                     <clade>\r
48                       <name>Bilateria &amp; Cnidaria</name>\r
49                       <clade>\r
50                         <taxonomy>\r
51                           <id provider="uniprot">33213</id>\r
52                           <scientific_name>Bilateria</scientific_name>\r
53                         </taxonomy>\r
54                         <clade>\r
55                           <taxonomy>\r
56                             <id provider="uniprot">33511</id>\r
57                             <scientific_name>Deuterostomia</scientific_name>\r
58                           </taxonomy>\r
59                           <reference doi="10.1038/nature04336">\r
60                           </reference>\r
61                           <clade>\r
62                             <taxonomy>\r
63                               <id provider="uniprot">7711</id>\r
64                               <scientific_name>Chordata</scientific_name>\r
65                               <rank>phylum</rank>\r
66                             </taxonomy>\r
67                             <clade>\r
68                               <name>Urochordata &amp; Vertebrata</name>\r
69                               <clade>\r
70                                 <taxonomy>\r
71                                   <id provider="uniprot">7742</id>\r
72                                   <scientific_name>Vertebrata</scientific_name>\r
73                                 </taxonomy>\r
74                                 <clade>\r
75                                   <taxonomy>\r
76                                     <id provider="uniprot">7776</id>\r
77                                     <scientific_name>Gnathostomata</scientific_name>\r
78                                     <common_name>jawed vertebrates</common_name>\r
79                                     <rank>superclass</rank>\r
80                                   </taxonomy>\r
81                                   <clade>\r
82                                     <taxonomy>\r
83                                       <id provider="uniprot">117571</id>\r
84                                       <scientific_name>Euteleostomi</scientific_name>\r
85                                       <common_name>bony vertebrates</common_name>\r
86                                     </taxonomy>\r
87                                     <clade>\r
88                                       <taxonomy>\r
89                                         <id provider="uniprot">8287</id>\r
90                                         <scientific_name>Sarcopterygii</scientific_name>\r
91                                         <common_name>lobe-finned fish</common_name>\r
92                                       </taxonomy>\r
93                                       <clade>\r
94                                         <taxonomy>\r
95                                           <id provider="uniprot">32523</id>\r
96                                           <scientific_name>Tetrapoda</scientific_name>\r
97                                         </taxonomy>\r
98                                         <clade>\r
99                                           <taxonomy>\r
100                                             <id provider="uniprot">32524</id>\r
101                                             <scientific_name>Amniota</scientific_name>\r
102                                           </taxonomy>\r
103                                           <clade>\r
104                                             <taxonomy>\r
105                                               <id provider="uniprot">40674</id>\r
106                                               <scientific_name>Mammalia</scientific_name>\r
107                                               <rank>class</rank>\r
108                                             </taxonomy>\r
109                                             <clade>\r
110                                               <name>Theria</name>\r
111                                               <clade>\r
112                                                 <taxonomy>\r
113                                                   <id provider="uniprot">9347</id>\r
114                                                   <scientific_name>Eutheria</scientific_name>\r
115                                                   <common_name>Placental mammals</common_name>\r
116                                                 </taxonomy>\r
117                                                 <reference doi="10.1002/bies.200900053">\r
118                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
119                                                 </reference>\r
120                                                 <clade>\r
121                                                   <taxonomy>\r
122                                                     <scientific_name>Boreoeutheria</scientific_name>\r
123                                                     <synonym>Boreotheria</synonym>\r
124                                                   </taxonomy>\r
125                                                   <clade>\r
126                                                     <taxonomy>\r
127                                                       <id provider="uniprot">314146</id>\r
128                                                       <scientific_name>Euarchontoglires</scientific_name>\r
129                                                       <rank>superorder</rank>\r
130                                                     </taxonomy>\r
131                                                     <clade>\r
132                                                       <taxonomy>\r
133                                                         <scientific_name>Euarchonta</scientific_name>\r
134                                                       </taxonomy>\r
135                                                       <clade>\r
136                                                         <taxonomy>\r
137                                                           <id provider="uniprot">9443</id>\r
138                                                           <scientific_name>Primates</scientific_name>\r
139                                                           <rank>order</rank>\r
140                                                         </taxonomy>\r
141                                                         <clade>\r
142                                                           <taxonomy>\r
143                                                             <id provider="uniprot">376913</id>\r
144                                                             <scientific_name>Haplorrhini</scientific_name>\r
145                                                             <rank>suborder</rank>\r
146                                                           </taxonomy>\r
147                                                           <clade>\r
148                                                             <taxonomy>\r
149                                                               <id provider="uniprot">314293</id>\r
150                                                               <scientific_name>Simiiformes</scientific_name>\r
151                                                               <rank>infraorder</rank>\r
152                                                             </taxonomy>\r
153                                                             <clade>\r
154                                                               <taxonomy>\r
155                                                                 <id provider="uniprot">9526</id>\r
156                                                                 <scientific_name>Catarrhini</scientific_name>\r
157                                                               </taxonomy>\r
158                                                               <clade>\r
159                                                                 <taxonomy>\r
160                                                                   <id provider="uniprot">314295</id>\r
161                                                                   <scientific_name>Hominoidea</scientific_name>\r
162                                                                   <common_name>Apes</common_name>\r
163                                                                   <rank>superfamily</rank>\r
164                                                                 </taxonomy>\r
165                                                                 <clade>\r
166                                                                   <taxonomy>\r
167                                                                     <id provider="uniprot">9604</id>\r
168                                                                     <scientific_name>Hominidae</scientific_name>\r
169                                                                     <common_name>Great apes</common_name>\r
170                                                                     <rank>family</rank>\r
171                                                                   </taxonomy>\r
172                                                                   <clade>\r
173                                                                     <taxonomy>\r
174                                                                       <id provider="uniprot">207598</id>\r
175                                                                       <scientific_name>Homininae</scientific_name>\r
176                                                                       <rank>subfamily</rank>\r
177                                                                     </taxonomy>\r
178                                                                     <clade>\r
179                                                                       <taxonomy>\r
180                                                                         <scientific_name>Hominini</scientific_name>\r
181                                                                         <rank>tribe</rank>\r
182                                                                       </taxonomy>\r
183                                                                       <clade>\r
184                                                                         <taxonomy>\r
185                                                                           <id provider="uniprot">9606</id>\r
186                                                                           <code>HUMAN</code>\r
187                                                                           <scientific_name>Homo sapiens</scientific_name>\r
188                                                                           <common_name>Human</common_name>\r
189                                                                           <rank>species</rank>\r
190                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
191                                                                         </taxonomy>\r
192                                                                       </clade>\r
193                                                                       <clade>\r
194                                                                         <taxonomy>\r
195                                                                           <id provider="uniprot">9598</id>\r
196                                                                           <code>PANTR</code>\r
197                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
198                                                                           <common_name>Chimpanzee</common_name>\r
199                                                                           <rank>species</rank>\r
200                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
201                                                                         </taxonomy>\r
202                                                                       </clade>\r
203                                                                     </clade>\r
204                                                                     <clade>\r
205                                                                       <taxonomy>\r
206                                                                         <id provider="uniprot">9595</id>\r
207                                                                         <code>GORGO</code>\r
208                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
209                                                                         <common_name>Western lowland gorilla</common_name>\r
210                                                                         <rank>subspecies</rank>\r
211                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
212                                                                       </taxonomy>\r
213                                                                     </clade>\r
214                                                                   </clade>\r
215                                                                   <clade>\r
216                                                                     <taxonomy>\r
217                                                                       <id provider="uniprot">9601</id>\r
218                                                                       <code>PONAB</code>\r
219                                                                       <scientific_name>Pongo abelii</scientific_name>\r
220                                                                       <common_name>Sumatran orangutan</common_name>\r
221                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
222                                                                       <rank>species</rank>\r
223                                                                       <uri>http://www.ism.ac.jp/~hasegawa/photos/animal3b.jpg</uri>\r
224                                                                     </taxonomy>\r
225                                                                   </clade>\r
226                                                                 </clade>\r
227                                                                 <clade>\r
228                                                                   <taxonomy>\r
229                                                                     <id provider="uniprot">61853</id>\r
230                                                                     <code>NOMLE</code>\r
231                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
232                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
233                                                                     <synonym>Hylobates leucogenys</synonym>\r
234                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
235                                                                     <rank>species</rank>\r
236                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
237                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
238                                                                   </taxonomy>\r
239                                                                 </clade>\r
240                                                               </clade>\r
241                                                               <clade>\r
242                                                                 <taxonomy>\r
243                                                                   <id provider="uniprot">9528</id>\r
244                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
245                                                                   <rank>subfamily</rank>\r
246                                                                 </taxonomy>\r
247                                                                 <clade>\r
248                                                                   <taxonomy>\r
249                                                                     <id provider="uniprot">9544</id>\r
250                                                                     <code>MACMU</code>\r
251                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
252                                                                     <common_name>Rhesus macaque</common_name>\r
253                                                                     <rank>species</rank>\r
254                                                                     <uri>http://www.our-pets.net/images/rhesus1.jpg</uri>\r
255                                                                   </taxonomy>\r
256                                                                 </clade>\r
257                                                                 <clade>\r
258                                                                   <taxonomy>\r
259                                                                     <id provider="uniprot">9557</id>\r
260                                                                     <code>PAPHA</code>\r
261                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
262                                                                     <common_name>Hamadryas baboon</common_name>\r
263                                                                     <rank>species</rank>\r
264                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
265                                                                   </taxonomy>\r
266                                                                 </clade>\r
267                                                               </clade>\r
268                                                             </clade>\r
269                                                             <clade>\r
270                                                               <taxonomy>\r
271                                                                 <id provider="uniprot">9483</id>\r
272                                                                 <code>CALJA</code>\r
273                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
274                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
275                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
276                                                                 <rank>species</rank>\r
277                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
278                                                               </taxonomy>\r
279                                                             </clade>\r
280                                                           </clade>\r
281                                                           <clade>\r
282                                                             <taxonomy>\r
283                                                               <id provider="uniprot">9478</id>\r
284                                                               <code>TARSY</code>\r
285                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
286                                                               <common_name>Philippine tarsier</common_name>\r
287                                                               <rank>species</rank>\r
288                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
289                                                             </taxonomy>\r
290                                                           </clade>\r
291                                                         </clade>\r
292                                                         <clade>\r
293                                                           <taxonomy>\r
294                                                             <id provider="uniprot">376911</id>\r
295                                                             <scientific_name>Strepsirrhini</scientific_name>\r
296                                                             <rank>suborder</rank>\r
297                                                           </taxonomy>\r
298                                                           <clade>\r
299                                                             <taxonomy>\r
300                                                               <id provider="uniprot">30608</id>\r
301                                                               <code>MICMU</code>\r
302                                                               <scientific_name>Microcebus murinus</scientific_name>\r
303                                                               <common_name>Lesser mouse lemur</common_name>\r
304                                                               <synonym>Gray Mouse Lemur</synonym>\r
305                                                               <rank>species</rank>\r
306                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
307                                                             </taxonomy>\r
308                                                           </clade>\r
309                                                           <clade>\r
310                                                             <taxonomy>\r
311                                                               <id provider="uniprot">30611</id>\r
312                                                               <code>OTOGA</code>\r
313                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
314                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
315                                                               <synonym>Galago garnetti</synonym>\r
316                                                               <synonym>Small-eared galago</synonym>\r
317                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
318                                                               <rank>species</rank>\r
319                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
320                                                             </taxonomy>\r
321                                                           </clade>\r
322                                                         </clade>\r
323                                                       </clade>\r
324                                                       <clade>\r
325                                                         <taxonomy>\r
326                                                           <id provider="uniprot">37347</id>\r
327                                                           <code>TUPBE</code>\r
328                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
329                                                           <common_name>Common tree shrew</common_name>\r
330                                                           <synonym>Tupaia glis belangeri</synonym>\r
331                                                           <rank>species</rank>\r
332                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
333                                                         </taxonomy>\r
334                                                       </clade>\r
335                                                     </clade>\r
336                                                     <clade>\r
337                                                       <taxonomy>\r
338                                                         <id provider="uniprot">314147</id>\r
339                                                         <scientific_name>Glires</scientific_name>\r
340                                                         <common_name>Rodents and rabbits</common_name>\r
341                                                       </taxonomy>\r
342                                                       <clade>\r
343                                                         <taxonomy>\r
344                                                           <id provider="uniprot">9989</id>\r
345                                                           <scientific_name>Rodentia</scientific_name>\r
346                                                           <rank>order</rank>\r
347                                                         </taxonomy>\r
348                                                         <clade>\r
349                                                           <name>Hystricomorpha &amp; Sciurognathi</name>\r
350                                                           <reference doi="10.1186/1471-2148-9-71">\r
351                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
352                                                           </reference>\r
353                                                           <clade>\r
354                                                             <taxonomy>\r
355                                                               <id provider="uniprot">33553</id>\r
356                                                               <scientific_name>Sciurognathi</scientific_name>\r
357                                                               <rank>suborder</rank>\r
358                                                             </taxonomy>\r
359                                                             <clade>\r
360                                                               <taxonomy>\r
361                                                                 <id provider="uniprot">337687</id>\r
362                                                                 <scientific_name>Muroidea</scientific_name>\r
363                                                               </taxonomy>\r
364                                                               <clade>\r
365                                                                 <taxonomy>\r
366                                                                   <id provider="uniprot">39107</id>\r
367                                                                   <scientific_name>Murinae</scientific_name>\r
368                                                                   <rank>subfamily</rank>\r
369                                                                 </taxonomy>\r
370                                                                 <clade>\r
371                                                                   <taxonomy>\r
372                                                                     <id provider="uniprot">10090</id>\r
373                                                                     <code>MOUSE</code>\r
374                                                                     <scientific_name>Mus musculus</scientific_name>\r
375                                                                     <common_name>Mouse</common_name>\r
376                                                                     <rank>species</rank>\r
377                                                                     <uri>http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg</uri>\r
378                                                                   </taxonomy>\r
379                                                                 </clade>\r
380                                                                 <clade>\r
381                                                                   <taxonomy>\r
382                                                                     <id provider="uniprot">10116</id>\r
383                                                                     <code>RAT</code>\r
384                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
385                                                                     <common_name>Rat</common_name>\r
386                                                                     <rank>species</rank>\r
387                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
388                                                                   </taxonomy>\r
389                                                                 </clade>\r
390                                                               </clade>\r
391                                                               <clade>\r
392                                                                 <taxonomy>\r
393                                                                   <id provider="uniprot">10036</id>\r
394                                                                   <code>MESAU</code>\r
395                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
396                                                                   <common_name>Golden hamster</common_name>\r
397                                                                   <rank>species</rank>\r
398                                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/85/Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG/800px-Syrian_hamster_filling_his_cheek_pouches_with_Dandelion_leaves.JPG</uri>\r
399                                                                 </taxonomy>\r
400                                                               </clade>\r
401                                                             </clade>\r
402                                                             <clade>\r
403                                                               <taxonomy>\r
404                                                                 <id provider="uniprot">10020</id>\r
405                                                                 <code>DIPOR</code>\r
406                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
407                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
408                                                                 <rank>species</rank>\r
409                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
410                                                               </taxonomy>\r
411                                                             </clade>\r
412                                                           </clade>\r
413                                                           <clade>\r
414                                                             <taxonomy>\r
415                                                               <id provider="uniprot">33550</id>\r
416                                                               <scientific_name>Hystricognathi</scientific_name>\r
417                                                               <rank>suborder</rank>\r
418                                                             </taxonomy>\r
419                                                             <clade>\r
420                                                               <taxonomy>\r
421                                                                 <id provider="uniprot">10141</id>\r
422                                                                 <code>CAVPO</code>\r
423                                                                 <scientific_name>Cavia porcellus</scientific_name>\r
424                                                                 <common_name>Guinea pig</common_name>\r
425                                                                 <rank>species</rank>\r
426                                                                 <uri>http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg</uri>\r
427                                                               </taxonomy>\r
428                                                             </clade>\r
429                                                             <clade>\r
430                                                               <taxonomy>\r
431                                                                 <id provider="uniprot">10181</id>\r
432                                                                 <code>HETGA</code>\r
433                                                                 <scientific_name>Heterocephalus glaber</scientific_name>\r
434                                                                 <common_name>Naked mole rat</common_name>\r
435                                                                 <rank>species</rank>\r
436                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/9092_3191/3555/0080.jpeg</uri>\r
437                                                               </taxonomy>\r
438                                                             </clade>\r
439                                                           </clade>\r
440                                                         </clade>\r
441                                                         <clade>\r
442                                                           <taxonomy>\r
443                                                             <id provider="uniprot">43179</id>\r
444                                                             <code>SPETR</code>\r
445                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
446                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
447                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
448                                                             <rank>species</rank>\r
449                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
450                                                           </taxonomy>\r
451                                                         </clade>\r
452                                                       </clade>\r
453                                                       <clade>\r
454                                                         <taxonomy>\r
455                                                           <id provider="uniprot">9975</id>\r
456                                                           <scientific_name>Lagomorpha</scientific_name>\r
457                                                           <rank>order</rank>\r
458                                                         </taxonomy>\r
459                                                         <clade>\r
460                                                           <taxonomy>\r
461                                                             <id provider="uniprot">9978</id>\r
462                                                             <code>OCHPR</code>\r
463                                                             <scientific_name>Ochotona princeps</scientific_name>\r
464                                                             <common_name>Southern American pika</common_name>\r
465                                                             <rank>species</rank>\r
466                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
467                                                           </taxonomy>\r
468                                                         </clade>\r
469                                                         <clade>\r
470                                                           <taxonomy>\r
471                                                             <id provider="uniprot">9986</id>\r
472                                                             <code>RABIT</code>\r
473                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
474                                                             <common_name>Rabbit</common_name>\r
475                                                             <rank>species</rank>\r
476                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Rabbit_in_montana.jpg/675px-Rabbit_in_montana.jpg</uri>\r
477                                                           </taxonomy>\r
478                                                         </clade>\r
479                                                       </clade>\r
480                                                     </clade>\r
481                                                   </clade>\r
482                                                   <clade>\r
483                                                     <taxonomy>\r
484                                                       <id provider="uniprot">314145</id>\r
485                                                       <scientific_name>Laurasiatheria</scientific_name>\r
486                                                       <rank>superorder</rank>\r
487                                                     </taxonomy>\r
488                                                     <clade>\r
489                                                       <taxonomy>\r
490                                                         <scientific_name>Scrotifera</scientific_name>\r
491                                                       </taxonomy>\r
492                                                       <clade>\r
493                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
494                                                         <clade>\r
495                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
496                                                           <clade>\r
497                                                             <taxonomy>\r
498                                                               <id provider="uniprot">91561</id>\r
499                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
500                                                               <common_name>Even-toed ungulates</common_name>\r
501                                                             </taxonomy>\r
502                                                             <clade>\r
503                                                               <name>Cetruminantia &amp; Suina</name>\r
504                                                               <clade>\r
505                                                                 <taxonomy>\r
506                                                                   <scientific_name>Cetruminantia</scientific_name>\r
507                                                                 </taxonomy>\r
508                                                                 <clade>\r
509                                                                   <taxonomy>\r
510                                                                     <id provider="uniprot">9895</id>\r
511                                                                     <scientific_name>Bovidae</scientific_name>\r
512                                                                     <rank>family</rank>\r
513                                                                   </taxonomy>\r
514                                                                   <clade>\r
515                                                                     <taxonomy>\r
516                                                                       <id provider="uniprot">9913</id>\r
517                                                                       <code>BOVIN</code>\r
518                                                                       <scientific_name>Bos taurus</scientific_name>\r
519                                                                       <common_name>Bovine</common_name>\r
520                                                                       <synonym>Bos bovis</synonym>\r
521                                                                       <rank>species</rank>\r
522                                                                       <uri>http://bioweb.uwlax.edu/bio203/s2007/hayes_katy/images/DSC01638.JPG</uri>\r
523                                                                     </taxonomy>\r
524                                                                   </clade>\r
525                                                                   <clade>\r
526                                                                     <taxonomy>\r
527                                                                       <id provider="uniprot">9940</id>\r
528                                                                       <code>SHEEP</code>\r
529                                                                       <scientific_name>Ovis aries</scientific_name>\r
530                                                                       <common_name>Sheep</common_name>\r
531                                                                       <rank>species</rank>\r
532                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
533                                                                     </taxonomy>\r
534                                                                   </clade>\r
535                                                                 </clade>\r
536                                                                 <clade>\r
537                                                                   <taxonomy>\r
538                                                                     <id provider="uniprot">9721</id>\r
539                                                                     <scientific_name>Cetacea</scientific_name>\r
540                                                                     <common_name>Whales</common_name>\r
541                                                                     <rank>order</rank>\r
542                                                                   </taxonomy>\r
543                                                                   <clade>\r
544                                                                     <taxonomy>\r
545                                                                       <id provider="uniprot">9771</id>\r
546                                                                       <code>BALMU</code>\r
547                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
548                                                                       <common_name>Blue whale</common_name>\r
549                                                                       <rank>species</rank>\r
550                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
551                                                                     </taxonomy>\r
552                                                                   </clade>\r
553                                                                   <clade>\r
554                                                                     <taxonomy>\r
555                                                                       <id provider="uniprot">9739</id>\r
556                                                                       <code>TURTR</code>\r
557                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
558                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
559                                                                       <synonym>Delphinus truncatus</synonym>\r
560                                                                       <rank>species</rank>\r
561                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
562                                                                     </taxonomy>\r
563                                                                   </clade>\r
564                                                                 </clade>\r
565                                                               </clade>\r
566                                                               <clade>\r
567                                                                 <taxonomy>\r
568                                                                   <id provider="uniprot">9823</id>\r
569                                                                   <code>PIG</code>\r
570                                                                   <scientific_name>Sus scrofa</scientific_name>\r
571                                                                   <common_name>Pig</common_name>\r
572                                                                   <rank>species</rank>\r
573                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
574                                                                 </taxonomy>\r
575                                                               </clade>\r
576                                                             </clade>\r
577                                                             <clade>\r
578                                                               <taxonomy>\r
579                                                                 <id provider="uniprot">30538</id>\r
580                                                                 <code>LAMPA</code>\r
581                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
582                                                                 <common_name>Alpaca</common_name>\r
583                                                                 <synonym>Lama pacos</synonym>\r
584                                                                 <rank>species</rank>\r
585                                                                 <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg</uri>\r
586                                                               </taxonomy>\r
587                                                             </clade>\r
588                                                           </clade>\r
589                                                           <clade>\r
590                                                             <taxonomy>\r
591                                                               <id provider="uniprot">9796</id>\r
592                                                               <code>HORSE</code>\r
593                                                               <scientific_name>Equus caballus</scientific_name>\r
594                                                               <common_name>Horse</common_name>\r
595                                                               <rank>species</rank>\r
596                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
597                                                             </taxonomy>\r
598                                                           </clade>\r
599                                                         </clade>\r
600                                                         <clade>\r
601                                                           <taxonomy>\r
602                                                             <id provider="uniprot">9397</id>\r
603                                                             <scientific_name>Chiroptera</scientific_name>\r
604                                                             <common_name>Bats</common_name>\r
605                                                             <rank>order</rank>\r
606                                                           </taxonomy>\r
607                                                           <clade>\r
608                                                             <taxonomy>\r
609                                                               <id provider="uniprot">59463</id>\r
610                                                               <code>MYOLU</code>\r
611                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
612                                                               <common_name>Little brown bat</common_name>\r
613                                                               <rank>species</rank>\r
614                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
615                                                             </taxonomy>\r
616                                                           </clade>\r
617                                                           <clade>\r
618                                                             <taxonomy>\r
619                                                               <id provider="uniprot">132908</id>\r
620                                                               <code>PTEVA</code>\r
621                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
622                                                               <common_name>Large flying fox</common_name>\r
623                                                               <rank>species</rank>\r
624                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
625                                                             </taxonomy>\r
626                                                           </clade>\r
627                                                         </clade>\r
628                                                       </clade>\r
629                                                       <clade>\r
630                                                         <name>Carnivora</name>\r
631                                                         <taxonomy>\r
632                                                           <id provider="uniprot">33554</id>\r
633                                                           <scientific_name>Carnivora</scientific_name>\r
634                                                           <rank>order</rank>\r
635                                                         </taxonomy>\r
636                                                         <clade>\r
637                                                           <taxonomy>\r
638                                                             <id provider="uniprot">379584</id>\r
639                                                             <scientific_name>Caniformia</scientific_name>\r
640                                                             <rank>suborder</rank>\r
641                                                           </taxonomy>\r
642                                                           <clade>\r
643                                                             <taxonomy>\r
644                                                               <id provider="uniprot">9646</id>\r
645                                                               <code>AILME</code>\r
646                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
647                                                               <common_name>Giant panda</common_name>\r
648                                                               <rank>species</rank>\r
649                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
650                                                             </taxonomy>\r
651                                                           </clade>\r
652                                                           <clade>\r
653                                                             <taxonomy>\r
654                                                               <id provider="uniprot">9615</id>\r
655                                                               <code>CANFA</code>\r
656                                                               <scientific_name>Canis familiaris</scientific_name>\r
657                                                               <common_name>Dog</common_name>\r
658                                                               <synonym>Canis lupus familiaris</synonym>\r
659                                                               <rank>subspecies</rank>\r
660                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
661                                                             </taxonomy>\r
662                                                           </clade>\r
663                                                         </clade>\r
664                                                         <clade>\r
665                                                           <taxonomy>\r
666                                                             <id provider="uniprot">9685</id>\r
667                                                             <code>FELCA</code>\r
668                                                             <scientific_name>Felis catus</scientific_name>\r
669                                                             <common_name>Cat</common_name>\r
670                                                             <synonym>Felis silvestris catus</synonym>\r
671                                                             <rank>species</rank>\r
672                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
673                                                           </taxonomy>\r
674                                                         </clade>\r
675                                                       </clade>\r
676                                                     </clade>\r
677                                                     <clade>\r
678                                                       <taxonomy>\r
679                                                         <id provider="uniprot">9362</id>\r
680                                                         <scientific_name>Insectivora</scientific_name>\r
681                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
682                                                         <rank>order</rank>\r
683                                                       </taxonomy>\r
684                                                       <clade>\r
685                                                         <taxonomy>\r
686                                                           <id provider="uniprot">9365</id>\r
687                                                           <code>ERIEU</code>\r
688                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
689                                                           <common_name>Western European hedgehog</common_name>\r
690                                                           <rank>species</rank>\r
691                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
692                                                         </taxonomy>\r
693                                                       </clade>\r
694                                                       <clade>\r
695                                                         <taxonomy>\r
696                                                           <id provider="uniprot">42254</id>\r
697                                                           <code>SORAR</code>\r
698                                                           <scientific_name>Sorex araneus</scientific_name>\r
699                                                           <common_name>Eurasian common shrew</common_name>\r
700                                                           <synonym>European shrew</synonym>\r
701                                                           <rank>species</rank>\r
702                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
703                                                         </taxonomy>\r
704                                                       </clade>\r
705                                                     </clade>\r
706                                                   </clade>\r
707                                                 </clade>\r
708                                                 <clade>\r
709                                                   <taxonomy>\r
710                                                     <scientific_name>Atlantogenata</scientific_name>\r
711                                                   </taxonomy>\r
712                                                   <clade>\r
713                                                     <taxonomy>\r
714                                                       <id provider="uniprot">311790</id>\r
715                                                       <scientific_name>Afrotheria</scientific_name>\r
716                                                       <rank>superorder</rank>\r
717                                                     </taxonomy>\r
718                                                     <clade>\r
719                                                       <taxonomy>\r
720                                                         <scientific_name>Paenungulata</scientific_name>\r
721                                                       </taxonomy>\r
722                                                       <clade>\r
723                                                         <taxonomy>\r
724                                                           <id provider="uniprot">9785</id>\r
725                                                           <code>LOXAF</code>\r
726                                                           <scientific_name>Loxodonta africana</scientific_name>\r
727                                                           <common_name>African savanna elephant</common_name>\r
728                                                           <rank>species</rank>\r
729                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
730                                                         </taxonomy>\r
731                                                       </clade>\r
732                                                       <clade>\r
733                                                         <taxonomy>\r
734                                                           <id provider="uniprot">9813</id>\r
735                                                           <code>PROCA</code>\r
736                                                           <scientific_name>Procavia capensis</scientific_name>\r
737                                                           <common_name>Cape hyrax</common_name>\r
738                                                           <synonym>Rock dassie</synonym>\r
739                                                           <rank>species</rank>\r
740                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
741                                                         </taxonomy>\r
742                                                       </clade>\r
743                                                     </clade>\r
744                                                     <clade>\r
745                                                       <taxonomy>\r
746                                                         <id provider="uniprot">9371</id>\r
747                                                         <code>ECHTE</code>\r
748                                                         <scientific_name>Echinops telfairi</scientific_name>\r
749                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
750                                                         <rank>species</rank>\r
751                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
752                                                       </taxonomy>\r
753                                                     </clade>\r
754                                                   </clade>\r
755                                                   <clade>\r
756                                                     <taxonomy>\r
757                                                       <id provider="uniprot">9348</id>\r
758                                                       <scientific_name>Xenarthra</scientific_name>\r
759                                                       <synonym>Edentata</synonym>\r
760                                                       <rank>superorder</rank>\r
761                                                     </taxonomy>\r
762                                                     <clade>\r
763                                                       <taxonomy>\r
764                                                         <id provider="uniprot">9358</id>\r
765                                                         <code>CHOHO</code>\r
766                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
767                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
768                                                         <rank>species</rank>\r
769                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
770                                                       </taxonomy>\r
771                                                     </clade>\r
772                                                     <clade>\r
773                                                       <taxonomy>\r
774                                                         <id provider="uniprot">9361</id>\r
775                                                         <code>DASNO</code>\r
776                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
777                                                         <common_name>Nine-banded armadillo</common_name>\r
778                                                         <rank>species</rank>\r
779                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
780                                                       </taxonomy>\r
781                                                     </clade>\r
782                                                   </clade>\r
783                                                 </clade>\r
784                                               </clade>\r
785                                               <clade>\r
786                                                 <taxonomy>\r
787                                                   <id provider="uniprot">9263</id>\r
788                                                   <scientific_name>Metatheria</scientific_name>\r
789                                                   <common_name>Marsupials</common_name>\r
790                                                 </taxonomy>\r
791                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
792                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
793                                                 </reference>\r
794                                                 <reference>\r
795                                                 </reference>\r
796                                                 <clade>\r
797                                                   <taxonomy>\r
798                                                     <scientific_name>Eometatheria</scientific_name>\r
799                                                   </taxonomy>\r
800                                                   <clade>\r
801                                                     <taxonomy>\r
802                                                       <id provider="uniprot">9315</id>\r
803                                                       <code>MACEU</code>\r
804                                                       <scientific_name>Macropus eugenii</scientific_name>\r
805                                                       <common_name>Tammar wallaby</common_name>\r
806                                                       <rank>species</rank>\r
807                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
808                                                     </taxonomy>\r
809                                                   </clade>\r
810                                                   <clade>\r
811                                                     <taxonomy>\r
812                                                       <id provider="uniprot">9305</id>\r
813                                                       <code>SARHA</code>\r
814                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
815                                                       <common_name>Tasmanian devil</common_name>\r
816                                                       <synonym>Sarcophilus laniarius</synonym>\r
817                                                       <rank>species</rank>\r
818                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
819                                                     </taxonomy>\r
820                                                   </clade>\r
821                                                 </clade>\r
822                                                 <clade>\r
823                                                   <taxonomy>\r
824                                                     <id provider="uniprot">13616</id>\r
825                                                     <code>MONDO</code>\r
826                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
827                                                     <common_name>Short-tailed gray opossum</common_name>\r
828                                                     <rank>species</rank>\r
829                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
830                                                   </taxonomy>\r
831                                                 </clade>\r
832                                               </clade>\r
833                                             </clade>\r
834                                             <clade>\r
835                                               <taxonomy>\r
836                                                 <id provider="uniprot">9258</id>\r
837                                                 <code>ORNAN</code>\r
838                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
839                                                 <common_name>Duckbill platypus</common_name>\r
840                                                 <rank>species</rank>\r
841                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png</uri>\r
842                                               </taxonomy>\r
843                                             </clade>\r
844                                           </clade>\r
845                                           <clade>\r
846                                             <taxonomy>\r
847                                               <id provider="uniprot">8457</id>\r
848                                               <scientific_name>Sauropsida</scientific_name>\r
849                                             </taxonomy>\r
850                                             <clade>\r
851                                               <taxonomy>\r
852                                                 <id provider="uniprot">1329799</id>\r
853                                                 <scientific_name>Testudines + Archosauria group</scientific_name>\r
854                                               </taxonomy>\r
855                                               <reference doi="10.1038/ng.2615">\r
856                                                 <desc>The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan</desc>\r
857                                               </reference>\r
858                                               <reference>\r
859                                               </reference>\r
860                                               <reference>\r
861                                               </reference>\r
862                                               <clade>\r
863                                                 <taxonomy>\r
864                                                   <id provider="uniprot">8492</id>\r
865                                                   <scientific_name>Archosauria</scientific_name>\r
866                                                 </taxonomy>\r
867                                                 <clade>\r
868                                                   <taxonomy>\r
869                                                     <id provider="uniprot">8825</id>\r
870                                                     <scientific_name>Neognathae</scientific_name>\r
871                                                     <rank>superorder</rank>\r
872                                                   </taxonomy>\r
873                                                   <clade>\r
874                                                     <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
875                                                     <clade>\r
876                                                       <taxonomy>\r
877                                                         <id provider="uniprot">9005</id>\r
878                                                         <scientific_name>Phasianidae</scientific_name>\r
879                                                         <rank>family</rank>\r
880                                                       </taxonomy>\r
881                                                       <clade>\r
882                                                         <taxonomy>\r
883                                                           <id provider="uniprot">9031</id>\r
884                                                           <code>CHICK</code>\r
885                                                           <scientific_name>Gallus gallus</scientific_name>\r
886                                                           <common_name>Chicken</common_name>\r
887                                                           <synonym>Gallus domesticus</synonym>\r
888                                                           <rank>species</rank>\r
889                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
890                                                         </taxonomy>\r
891                                                       </clade>\r
892                                                       <clade>\r
893                                                         <taxonomy>\r
894                                                           <id provider="uniprot">9103</id>\r
895                                                           <code>MELGA</code>\r
896                                                           <scientific_name>Meleagris gallopavo</scientific_name>\r
897                                                           <common_name>Common turkey</common_name>\r
898                                                           <rank>species</rank>\r
899                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
900                                                         </taxonomy>\r
901                                                       </clade>\r
902                                                     </clade>\r
903                                                     <clade>\r
904                                                       <taxonomy>\r
905                                                         <id provider="uniprot">8839</id>\r
906                                                         <code>ANAPL</code>\r
907                                                         <scientific_name>Anas platyrhynchos</scientific_name>\r
908                                                         <common_name>Domestic duck</common_name>\r
909                                                         <synonym>Anas boschas</synonym>\r
910                                                         <rank>species</rank>\r
911                                                         <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
912                                                       </taxonomy>\r
913                                                     </clade>\r
914                                                   </clade>\r
915                                                   <clade>\r
916                                                     <taxonomy>\r
917                                                       <id provider="uniprot">9126</id>\r
918                                                       <scientific_name>Passeriformes</scientific_name>\r
919                                                       <rank>order</rank>\r
920                                                     </taxonomy>\r
921                                                     <clade>\r
922                                                       <taxonomy>\r
923                                                         <id provider="uniprot">59729</id>\r
924                                                         <code>TAEGU</code>\r
925                                                         <scientific_name>Taeniopygia guttata</scientific_name>\r
926                                                         <common_name>Zebra finch</common_name>\r
927                                                         <synonym>Poephila guttata</synonym>\r
928                                                         <rank>species</rank>\r
929                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
930                                                       </taxonomy>\r
931                                                     </clade>\r
932                                                     <clade>\r
933                                                       <taxonomy>\r
934                                                         <id provider="uniprot">59894</id>\r
935                                                         <code>FICAL</code>\r
936                                                         <scientific_name>Ficedula albicollis</scientific_name>\r
937                                                         <common_name>Collared flycatcher</common_name>\r
938                                                         <synonym>Muscicapa albicollis</synonym>\r
939                                                         <rank>species</rank>\r
940                                                         <uri>http://www.biolib.cz/IMG/GAL/156619.jpg</uri>\r
941                                                       </taxonomy>\r
942                                                     </clade>\r
943                                                   </clade>\r
944                                                 </clade>\r
945                                                 <clade>\r
946                                                   <taxonomy>\r
947                                                     <id provider="uniprot">8496</id>\r
948                                                     <code>ALLMI</code>\r
949                                                     <scientific_name>Alligator mississippiensis</scientific_name>\r
950                                                     <common_name>American alligator</common_name>\r
951                                                     <rank>species</rank>\r
952                                                     <uri>http://www.herpcenter.com/reptile-caresheets/images/american_alligator.jpg</uri>\r
953                                                   </taxonomy>\r
954                                                 </clade>\r
955                                               </clade>\r
956                                               <clade>\r
957                                                 <taxonomy>\r
958                                                   <id provider="uniprot">13735</id>\r
959                                                   <code>PELSI</code>\r
960                                                   <scientific_name>Pelodiscus sinensis</scientific_name>\r
961                                                   <authority>(Wiegmann, 1835) Cox et al. 1998</authority>\r
962                                                   <common_name>Chinese softshell turtle</common_name>\r
963                                                   <synonym>Trionyx sinensis</synonym>\r
964                                                   <rank>species</rank>\r
965                                                   <uri>http://www.chelonia.org/PsinensisTR1.jpg</uri>\r
966                                                 </taxonomy>\r
967                                               </clade>\r
968                                             </clade>\r
969                                             <clade>\r
970                                               <taxonomy>\r
971                                                 <id provider="uniprot">1329911</id>\r
972                                                 <scientific_name>Toxicofera</scientific_name>\r
973                                               </taxonomy>\r
974                                               <clade>\r
975                                                 <taxonomy>\r
976                                                   <id provider="uniprot">8570</id>\r
977                                                   <scientific_name>Serpentes</scientific_name>\r
978                                                   <common_name>snakes</common_name>\r
979                                                   <rank>infraorder</rank>\r
980                                                 </taxonomy>\r
981                                                 <clade>\r
982                                                   <taxonomy>\r
983                                                     <id provider="uniprot">8665</id>\r
984                                                     <code>OPHHA</code>\r
985                                                     <scientific_name>Ophiophagus hannah</scientific_name>\r
986                                                     <common_name>King cobra</common_name>\r
987                                                     <synonym>Naja hannah</synonym>\r
988                                                     <rank>species</rank>\r
989                                                     <uri>http://www.thehindu.com/multimedia/dynamic/01674/KING_COBRA_1674012e.jpg</uri>\r
990                                                   </taxonomy>\r
991                                                 </clade>\r
992                                                 <clade>\r
993                                                   <taxonomy>\r
994                                                     <id provider="uniprot">176946</id>\r
995                                                     <code>PYTBI</code>\r
996                                                     <scientific_name>Python bivittatus</scientific_name>\r
997                                                     <common_name>Burmese python</common_name>\r
998                                                     <synonym>Python molurus bivittatus</synonym>\r
999                                                     <rank>species</rank>\r
1000                                                     <uri>http://www.nps.gov/ever/parknews/images/KLwoodrat_python_5626.jpg</uri>\r
1001                                                   </taxonomy>\r
1002                                                 </clade>\r
1003                                               </clade>\r
1004                                               <clade>\r
1005                                                 <taxonomy>\r
1006                                                   <id provider="uniprot">28377</id>\r
1007                                                   <code>ANOCA</code>\r
1008                                                   <scientific_name>Anolis carolinensis</scientific_name>\r
1009                                                   <authority>Voigt, 1832</authority>\r
1010                                                   <common_name>Green anole</common_name>\r
1011                                                   <synonym>American chameleon</synonym>\r
1012                                                   <rank>species</rank>\r
1013                                                   <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
1014                                                   <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
1015                                                 </taxonomy>\r
1016                                               </clade>\r
1017                                             </clade>\r
1018                                           </clade>\r
1019                                         </clade>\r
1020                                         <clade>\r
1021                                           <taxonomy>\r
1022                                             <id provider="uniprot">8292</id>\r
1023                                             <scientific_name>Amphibia</scientific_name>\r
1024                                             <rank>class</rank>\r
1025                                           </taxonomy>\r
1026                                           <clade>\r
1027                                             <taxonomy>\r
1028                                               <id provider="uniprot">41666</id>\r
1029                                               <scientific_name>Batrachia</scientific_name>\r
1030                                               <rank>superorder</rank>\r
1031                                             </taxonomy>\r
1032                                             <clade>\r
1033                                               <taxonomy>\r
1034                                                 <id provider="uniprot">8342</id>\r
1035                                                 <scientific_name>Anura</scientific_name>\r
1036                                                 <rank>order</rank>\r
1037                                               </taxonomy>\r
1038                                               <clade>\r
1039                                                 <taxonomy>\r
1040                                                   <id provider="uniprot">8353</id>\r
1041                                                   <scientific_name>Xenopus</scientific_name>\r
1042                                                   <rank>genus</rank>\r
1043                                                 </taxonomy>\r
1044                                                 <clade>\r
1045                                                   <taxonomy>\r
1046                                                     <id provider="uniprot">8355</id>\r
1047                                                     <code>XENLA</code>\r
1048                                                     <scientific_name>Xenopus laevis</scientific_name>\r
1049                                                     <authority>Daudin, 1802</authority>\r
1050                                                     <common_name>African clawed frog</common_name>\r
1051                                                     <synonym>Bufo laevis</synonym>\r
1052                                                     <rank>species</rank>\r
1053                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>\r
1054                                                   </taxonomy>\r
1055                                                 </clade>\r
1056                                                 <clade>\r
1057                                                   <taxonomy>\r
1058                                                     <id provider="uniprot">8364</id>\r
1059                                                     <code>XENTR</code>\r
1060                                                     <scientific_name>Xenopus tropicalis</scientific_name>\r
1061                                                     <common_name>Western clawed frog</common_name>\r
1062                                                     <synonym>Silurana tropicalis</synonym>\r
1063                                                     <rank>species</rank>\r
1064                                                     <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
1065                                                   </taxonomy>\r
1066                                                 </clade>\r
1067                                               </clade>\r
1068                                               <clade>\r
1069                                                 <taxonomy>\r
1070                                                   <id provider="uniprot">8384</id>\r
1071                                                   <code>BUFBU</code>\r
1072                                                   <scientific_name>Bufo bufo</scientific_name>\r
1073                                                   <common_name>European toad</common_name>\r
1074                                                   <rank>species</rank>\r
1075                                                   <uri>http://www.naturephoto-cz.com/photos/others/common-toad-22611.jpg</uri>\r
1076                                                 </taxonomy>\r
1077                                               </clade>\r
1078                                             </clade>\r
1079                                             <clade>\r
1080                                               <taxonomy>\r
1081                                                 <id provider="uniprot">8293</id>\r
1082                                                 <scientific_name>Caudata</scientific_name>\r
1083                                                 <rank>order</rank>\r
1084                                               </taxonomy>\r
1085                                               <clade>\r
1086                                                 <taxonomy>\r
1087                                                   <id provider="uniprot">1331674</id>\r
1088                                                   <scientific_name>Pleurodelinae</scientific_name>\r
1089                                                   <rank>subfamily</rank>\r
1090                                                 </taxonomy>\r
1091                                                 <clade>\r
1092                                                   <taxonomy>\r
1093                                                     <id provider="uniprot">54263</id>\r
1094                                                     <code>MESAL</code>\r
1095                                                     <scientific_name>Mesotriton alpestris</scientific_name>\r
1096                                                     <common_name>Alpine newt</common_name>\r
1097                                                     <synonym>Ichthyosaura alpestris</synonym>\r
1098                                                     <synonym>Mesotriton alpestris</synonym>\r
1099                                                     <rank>species</rank>\r
1100                                                     <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0403/0436.jpeg</uri>\r
1101                                                   </taxonomy>\r
1102                                                 </clade>\r
1103                                                 <clade>\r
1104                                                   <taxonomy>\r
1105                                                     <id provider="uniprot">8316</id>\r
1106                                                     <code>NOTVI</code>\r
1107                                                     <scientific_name>Notophthalmus viridescens</scientific_name>\r
1108                                                     <common_name>Eastern newt</common_name>\r
1109                                                     <synonym>Triturus viridescens</synonym>\r
1110                                                     <rank>species</rank>\r
1111                                                     <uri>http://www.jeffpippen.com/herps/enewt120908-9654sandybottomz.jpg</uri>\r
1112                                                   </taxonomy>\r
1113                                                 </clade>\r
1114                                               </clade>\r
1115                                               <clade>\r
1116                                                 <taxonomy>\r
1117                                                   <id provider="uniprot">8341</id>\r
1118                                                   <code>SIRIN</code>\r
1119                                                   <scientific_name>Siren intermedia</scientific_name>\r
1120                                                   <common_name>Lesser siren</common_name>\r
1121                                                   <rank>species</rank>\r
1122                                                   <uri>http://us.i1.yimg.com/us.yimg.com/i/ligans/animals/m/ar0181_1m.jpg</uri>\r
1123                                                 </taxonomy>\r
1124                                               </clade>\r
1125                                             </clade>\r
1126                                           </clade>\r
1127                                           <clade>\r
1128                                             <taxonomy>\r
1129                                               <id provider="uniprot">543905</id>\r
1130                                               <code>OSCOC</code>\r
1131                                               <scientific_name>Oscaecilia ochrocephala</scientific_name>\r
1132                                               <common_name>Yellow-headed caecilian</common_name>\r
1133                                               <rank>species</rank>\r
1134                                               <uri>http://media.eol.org/content/2011/06/24/14/82959_580_360.jpg</uri>\r
1135                                             </taxonomy>\r
1136                                           </clade>\r
1137                                         </clade>\r
1138                                       </clade>\r
1139                                       <clade>\r
1140                                         <taxonomy>\r
1141                                           <id provider="uniprot">7897</id>\r
1142                                           <code>LATCH</code>\r
1143                                           <scientific_name>Latimeria chalumnae</scientific_name>\r
1144                                           <common_name>West Indian ocean coelacanth</common_name>\r
1145                                           <rank>species</rank>\r
1146                                           <uri>http://marinebio.org/upload/Latimeria-chalumnae/1.jpg</uri>\r
1147                                           <uri>http://images.nationalgeographic.com/wpf/media-live/photos/000/005/cache/coelacanth_501_600x450.jpg</uri>\r
1148                                         </taxonomy>\r
1149                                       </clade>\r
1150                                     </clade>\r
1151                                     <clade>\r
1152                                       <taxonomy>\r
1153                                         <id provider="uniprot">7898</id>\r
1154                                         <scientific_name>Actinopterygii</scientific_name>\r
1155                                         <common_name>bony fishes</common_name>\r
1156                                         <rank>class</rank>\r
1157                                       </taxonomy>\r
1158                                       <clade>\r
1159                                         <taxonomy>\r
1160                                           <id provider="uniprot">186623</id>\r
1161                                           <scientific_name>Actinopteri</scientific_name>\r
1162                                         </taxonomy>\r
1163                                         <clade>\r
1164                                           <taxonomy>\r
1165                                             <id provider="uniprot">41665</id>\r
1166                                             <scientific_name>Neopterygii</scientific_name>\r
1167                                           </taxonomy>\r
1168                                           <clade>\r
1169                                             <taxonomy>\r
1170                                               <id provider="uniprot">32443</id>\r
1171                                               <scientific_name>Teleostei</scientific_name>\r
1172                                             </taxonomy>\r
1173                                             <clade>\r
1174                                               <taxonomy>\r
1175                                                 <id provider="uniprot">123368</id>\r
1176                                                 <scientific_name>Acanthomorpha</scientific_name>\r
1177                                               </taxonomy>\r
1178                                               <clade>\r
1179                                                 <taxonomy>\r
1180                                                   <id provider="uniprot">32485</id>\r
1181                                                   <scientific_name>Percomorpha</scientific_name>\r
1182                                                 </taxonomy>\r
1183                                                 <clade>\r
1184                                                   <taxonomy>\r
1185                                                     <id provider="uniprot">129949</id>\r
1186                                                     <scientific_name>Smegmamorpha</scientific_name>\r
1187                                                   </taxonomy>\r
1188                                                   <clade>\r
1189                                                     <taxonomy>\r
1190                                                       <id provider="uniprot">32456</id>\r
1191                                                       <scientific_name>Atherinomorpha</scientific_name>\r
1192                                                     </taxonomy>\r
1193                                                     <clade>\r
1194                                                       <taxonomy>\r
1195                                                         <id provider="uniprot">8090</id>\r
1196                                                         <code>ORYLA</code>\r
1197                                                         <scientific_name>Oryzias latipes</scientific_name>\r
1198                                                         <common_name>Medaka fish</common_name>\r
1199                                                         <synonym>Japanese ricefish</synonym>\r
1200                                                         <rank>species</rank>\r
1201                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
1202                                                       </taxonomy>\r
1203                                                     </clade>\r
1204                                                     <clade>\r
1205                                                       <taxonomy>\r
1206                                                         <id provider="uniprot">8083</id>\r
1207                                                         <code>XIPMA</code>\r
1208                                                         <scientific_name>Xiphophorus maculatus</scientific_name>\r
1209                                                         <authority>Guenther, 1866</authority>\r
1210                                                         <common_name>Southern platyfish</common_name>\r
1211                                                         <synonym>Platypoecilus maculatus</synonym>\r
1212                                                         <rank>species</rank>\r
1213                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/6/6b/Poissons_06.jpg</uri>\r
1214                                                       </taxonomy>\r
1215                                                     </clade>\r
1216                                                   </clade>\r
1217                                                   <clade>\r
1218                                                     <taxonomy>\r
1219                                                       <id provider="uniprot">69293</id>\r
1220                                                       <code>GASAC</code>\r
1221                                                       <scientific_name>Gasterosteus aculeatus</scientific_name>\r
1222                                                       <common_name>Three-spined stickleback</common_name>\r
1223                                                       <rank>species</rank>\r
1224                                                       <uri>http://www.jjphoto.dk/fish_archive/freshwater/gasterosteus_aculeatus.jpg</uri>\r
1225                                                     </taxonomy>\r
1226                                                   </clade>\r
1227                                                 </clade>\r
1228                                                 <clade>\r
1229                                                   <taxonomy>\r
1230                                                     <id provider="uniprot">31031</id>\r
1231                                                     <scientific_name>Tetraodontidae</scientific_name>\r
1232                                                     <common_name>puffers</common_name>\r
1233                                                     <rank>family</rank>\r
1234                                                   </taxonomy>\r
1235                                                   <clade>\r
1236                                                     <taxonomy>\r
1237                                                       <id provider="uniprot">31033</id>\r
1238                                                       <code>TAKRU</code>\r
1239                                                       <scientific_name>Takifugu rubripes</scientific_name>\r
1240                                                       <common_name>Japanese pufferfish</common_name>\r
1241                                                       <synonym>Fugu rubripes</synonym>\r
1242                                                       <rank>species</rank>\r
1243                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
1244                                                     </taxonomy>\r
1245                                                   </clade>\r
1246                                                   <clade>\r
1247                                                     <taxonomy>\r
1248                                                       <id provider="uniprot">99883</id>\r
1249                                                       <code>TETNG</code>\r
1250                                                       <scientific_name>Tetraodon nigroviridis</scientific_name>\r
1251                                                       <common_name>Green puffer</common_name>\r
1252                                                       <synonym>Chelonodon nigroviridis</synonym>\r
1253                                                       <rank>species</rank>\r
1254                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
1255                                                     </taxonomy>\r
1256                                                   </clade>\r
1257                                                 </clade>\r
1258                                                 <clade>\r
1259                                                   <taxonomy>\r
1260                                                     <id provider="uniprot">8128</id>\r
1261                                                     <code>ORENI</code>\r
1262                                                     <scientific_name>Tilapia nilotica</scientific_name>\r
1263                                                     <authority>Linnaeus, 1758</authority>\r
1264                                                     <common_name>Nile tilapia</common_name>\r
1265                                                     <synonym>Tilapia nilotica</synonym>\r
1266                                                     <rank>species</rank>\r
1267                                                     <uri>http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg</uri>\r
1268                                                   </taxonomy>\r
1269                                                 </clade>\r
1270                                               </clade>\r
1271                                               <clade>\r
1272                                                 <taxonomy>\r
1273                                                   <id provider="uniprot">8049</id>\r
1274                                                   <code>GADMO</code>\r
1275                                                   <scientific_name>Gadus morhua</scientific_name>\r
1276                                                   <common_name>Atlantic cod</common_name>\r
1277                                                   <rank>species</rank>\r
1278                                                   <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
1279                                                 </taxonomy>\r
1280                                               </clade>\r
1281                                             </clade>\r
1282                                             <clade>\r
1283                                               <taxonomy>\r
1284                                                 <id provider="uniprot">32519</id>\r
1285                                                 <scientific_name>Ostariophysi</scientific_name>\r
1286                                               </taxonomy>\r
1287                                               <clade>\r
1288                                                 <taxonomy>\r
1289                                                   <id provider="uniprot">7994</id>\r
1290                                                   <code>ASTMX</code>\r
1291                                                   <scientific_name>Astyanax mexicanus</scientific_name>\r
1292                                                   <common_name>Blind cave fish</common_name>\r
1293                                                   <synonym>Astyanax fasciatus mexicanus</synonym>\r
1294                                                   <rank>species</rank>\r
1295                                                   <uri>http://nas.er.usgs.gov/XIMAGESERVERX/2005/20051101115108.jpg</uri>\r
1296                                                   <uri>http://www.seriouslyfish.com/wp-content/uploads/2012/04/Astyanax-mexicanus-blind-HJ-Chen.jpg</uri>\r
1297                                                 </taxonomy>\r
1298                                               </clade>\r
1299                                               <clade>\r
1300                                                 <taxonomy>\r
1301                                                   <id provider="uniprot">7955</id>\r
1302                                                   <code>DANRE</code>\r
1303                                                   <scientific_name>Danio rerio</scientific_name>\r
1304                                                   <common_name>Zebrafish</common_name>\r
1305                                                   <synonym>Brachydanio rerio</synonym>\r
1306                                                   <rank>species</rank>\r
1307                                                   <uri>http://www.cas.vanderbilt.edu/bioimages/animals/danrer/wdanreradult38824.jpg</uri>\r
1308                                                 </taxonomy>\r
1309                                               </clade>\r
1310                                             </clade>\r
1311                                           </clade>\r
1312                                           <clade>\r
1313                                             <taxonomy>\r
1314                                               <id provider="uniprot">7918</id>\r
1315                                               <code>LEPOC</code>\r
1316                                               <scientific_name>Lepisosteus oculatus</scientific_name>\r
1317                                               <authority>Winchell, 1864</authority>\r
1318                                               <common_name>Spotted gar</common_name>\r
1319                                               <rank>species</rank>\r
1320                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0804/0024.jpeg</uri>\r
1321                                               <uri>http://fishbase.org/images/species/Leocu_u8.jpg</uri>\r
1322                                             </taxonomy>\r
1323                                           </clade>\r
1324                                         </clade>\r
1325                                         <clade>\r
1326                                           <taxonomy>\r
1327                                             <id provider="uniprot">7899</id>\r
1328                                             <scientific_name>Acipenseriformes</scientific_name>\r
1329                                             <rank>order</rank>\r
1330                                           </taxonomy>\r
1331                                           <clade>\r
1332                                             <taxonomy>\r
1333                                               <id provider="uniprot">7913</id>\r
1334                                               <code>POLSP</code>\r
1335                                               <scientific_name>Polyodon spathula</scientific_name>\r
1336                                               <common_name>North American paddlefish</common_name>\r
1337                                               <synonym>Squalus spathula</synonym>\r
1338                                               <rank>species</rank>\r
1339                                               <uri>http://www.fishbase.org/images/species/Pospa_u0.jpg</uri>\r
1340                                             </taxonomy>\r
1341                                           </clade>\r
1342                                           <clade>\r
1343                                             <taxonomy>\r
1344                                               <id provider="uniprot">55293</id>\r
1345                                               <scientific_name>Huso dauricus</scientific_name>\r
1346                                               <common_name>Kaluga</common_name>\r
1347                                               <rank>species</rank>\r
1348                                               <uri>http://www.theanimalworld.ru/img/encycl/fish/big/kaluga.jpg</uri>\r
1349                                             </taxonomy>\r
1350                                           </clade>\r
1351                                         </clade>\r
1352                                       </clade>\r
1353                                       <clade>\r
1354                                         <taxonomy>\r
1355                                           <id provider="uniprot">27687</id>\r
1356                                           <code>ERPCA</code>\r
1357                                           <scientific_name>Erpetoichthys calabaricus</scientific_name>\r
1358                                           <common_name>Rope fish</common_name>\r
1359                                           <synonym>Calamoichthys calabaricus</synonym>\r
1360                                           <rank>species</rank>\r
1361                                           <uri>http://www.biolib.cz/IMG/GAL/8029.jpg</uri>\r
1362                                         </taxonomy>\r
1363                                       </clade>\r
1364                                     </clade>\r
1365                                   </clade>\r
1366                                   <clade>\r
1367                                     <taxonomy>\r
1368                                       <id provider="uniprot">7868</id>\r
1369                                       <code>CALMI</code>\r
1370                                       <scientific_name>Callorhynchus milii</scientific_name>\r
1371                                       <common_name>Australian ghost shark</common_name>\r
1372                                       <synonym>Australian ghost shark</synonym>\r
1373                                       <rank>species</rank>\r
1374                                       <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1375                                     </taxonomy>\r
1376                                   </clade>\r
1377                                 </clade>\r
1378                                 <clade>\r
1379                                   <taxonomy>\r
1380                                     <id provider="uniprot">7757</id>\r
1381                                     <code>PETMA</code>\r
1382                                     <scientific_name>Petromyzon marinus</scientific_name>\r
1383                                     <common_name>Sea lamprey</common_name>\r
1384                                     <rank>species</rank>\r
1385                                     <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1386                                   </taxonomy>\r
1387                                 </clade>\r
1388                               </clade>\r
1389                               <clade>\r
1390                                 <name>Urochordata</name>\r
1391                                 <taxonomy>\r
1392                                   <id provider="uniprot">7712</id>\r
1393                                   <scientific_name>Urochordata</scientific_name>\r
1394                                   <rank>subphylum</rank>\r
1395                                 </taxonomy>\r
1396                                 <clade>\r
1397                                   <taxonomy>\r
1398                                     <id provider="uniprot">7718</id>\r
1399                                     <scientific_name>Ciona</scientific_name>\r
1400                                     <rank>genus</rank>\r
1401                                   </taxonomy>\r
1402                                   <clade>\r
1403                                     <taxonomy>\r
1404                                       <id provider="uniprot">7719</id>\r
1405                                       <code>CIOIN</code>\r
1406                                       <scientific_name>Ciona intestinalis</scientific_name>\r
1407                                       <common_name>Transparent sea squirt</common_name>\r
1408                                       <synonym>Ascidia intestinalis</synonym>\r
1409                                       <rank>species</rank>\r
1410                                       <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1411                                     </taxonomy>\r
1412                                   </clade>\r
1413                                   <clade>\r
1414                                     <taxonomy>\r
1415                                       <id provider="uniprot">51511</id>\r
1416                                       <code>CIOSA</code>\r
1417                                       <scientific_name>Ciona savignyi</scientific_name>\r
1418                                       <common_name>Pacific transparent sea squirt</common_name>\r
1419                                       <rank>species</rank>\r
1420                                       <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1421                                     </taxonomy>\r
1422                                   </clade>\r
1423                                 </clade>\r
1424                                 <clade>\r
1425                                   <taxonomy>\r
1426                                     <id provider="ncbi">34765</id>\r
1427                                     <code>OIKDI</code>\r
1428                                     <scientific_name>Oikopleura dioica</scientific_name>\r
1429                                     <common_name>Tunicate</common_name>\r
1430                                     <rank>species</rank>\r
1431                                     <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1432                                   </taxonomy>\r
1433                                 </clade>\r
1434                               </clade>\r
1435                             </clade>\r
1436                             <clade>\r
1437                               <taxonomy>\r
1438                                 <id provider="uniprot">7739</id>\r
1439                                 <code>BRAFL</code>\r
1440                                 <scientific_name>Branchiostoma floridae</scientific_name>\r
1441                                 <common_name>Florida lancelet</common_name>\r
1442                                 <synonym>Amphioxus</synonym>\r
1443                                 <rank>species</rank>\r
1444                                 <uri>http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg</uri>\r
1445                               </taxonomy>\r
1446                             </clade>\r
1447                           </clade>\r
1448                           <clade>\r
1449                             <name>Hemichordata &amp; Echinodermata</name>\r
1450                             <clade>\r
1451                               <taxonomy>\r
1452                                 <id provider="uniprot">7586</id>\r
1453                                 <scientific_name>Echinodermata</scientific_name>\r
1454                                 <rank>phylum</rank>\r
1455                               </taxonomy>\r
1456                               <clade>\r
1457                                 <taxonomy>\r
1458                                   <id provider="uniprot">133551</id>\r
1459                                   <scientific_name>Eleutherozoa</scientific_name>\r
1460                                   <rank>subphylum</rank>\r
1461                                 </taxonomy>\r
1462                                 <clade>\r
1463                                   <taxonomy>\r
1464                                     <id provider="uniprot">7674</id>\r
1465                                     <scientific_name>Echinacea</scientific_name>\r
1466                                     <rank>superorder</rank>\r
1467                                   </taxonomy>\r
1468                                   <clade>\r
1469                                     <taxonomy>\r
1470                                       <id provider="uniprot">7654</id>\r
1471                                       <code>LYTVA</code>\r
1472                                       <scientific_name>Lytechinus variegatus</scientific_name>\r
1473                                       <common_name>Green sea urchin</common_name>\r
1474                                       <synonym>Variegated urchin</synonym>\r
1475                                       <rank>species</rank>\r
1476                                       <uri>http://imagess3.enature.com/seashore/seashore_l/sc0090_1l.jpg</uri>\r
1477                                     </taxonomy>\r
1478                                   </clade>\r
1479                                   <clade>\r
1480                                     <taxonomy>\r
1481                                       <id provider="uniprot">7668</id>\r
1482                                       <code>STRPU</code>\r
1483                                       <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1484                                       <common_name>Purple sea urchin</common_name>\r
1485                                       <rank>species</rank>\r
1486                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1487                                     </taxonomy>\r
1488                                   </clade>\r
1489                                 </clade>\r
1490                                 <clade>\r
1491                                   <taxonomy>\r
1492                                     <id provider="uniprot">46514</id>\r
1493                                     <code>PATMI</code>\r
1494                                     <scientific_name>Patiria miniata</scientific_name>\r
1495                                     <common_name>Bat star</common_name>\r
1496                                     <synonym>Asterina miniata</synonym>\r
1497                                     <rank>species</rank>\r
1498                                     <uri>http://calphotos.berkeley.edu/imgs/256x384/9092_3191/3549/0105.jpeg</uri>\r
1499                                   </taxonomy>\r
1500                                 </clade>\r
1501                               </clade>\r
1502                               <clade>\r
1503                                 <taxonomy>\r
1504                                   <id provider="uniprot">73431</id>\r
1505                                   <scientific_name>Florometra serratissima</scientific_name>\r
1506                                   <common_name>common feather star</common_name>\r
1507                                   <rank>species</rank>\r
1508                                   <uri>http://www.alaska-in-pictures.com/data/media/1/feather-star-pattern_6081.jpg</uri>\r
1509                                 </taxonomy>\r
1510                               </clade>\r
1511                             </clade>\r
1512                             <clade>\r
1513                               <taxonomy>\r
1514                                 <id provider="uniprot">10224</id>\r
1515                                 <code>SACKO</code>\r
1516                                 <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1517                                 <authority>Agassiz, 1873</authority>\r
1518                                 <common_name>Acorn worm</common_name>\r
1519                                 <rank>species</rank>\r
1520                                 <uri>http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg</uri>\r
1521                               </taxonomy>\r
1522                             </clade>\r
1523                           </clade>\r
1524                         </clade>\r
1525                         <clade>\r
1526                           <taxonomy>\r
1527                             <id provider="uniprot">33317</id>\r
1528                             <scientific_name>Protostomia</scientific_name>\r
1529                           </taxonomy>\r
1530                           <clade>\r
1531                             <taxonomy>\r
1532                               <id provider="uniprot">1206794</id>\r
1533                               <scientific_name>Ecdysozoa</scientific_name>\r
1534                             </taxonomy>\r
1535                             <reference doi="10.1098/rstb.2007.2243">\r
1536                               <desc>The evolution of the Ecdysozoa</desc>\r
1537                             </reference>\r
1538                             <clade>\r
1539                               <taxonomy>\r
1540                                 <id provider="uniprot">88770</id>\r
1541                                 <scientific_name>Panarthropoda</scientific_name>\r
1542                               </taxonomy>\r
1543                               <clade>\r
1544                                 <name>Onychophora &amp; Arthropoda</name>\r
1545                                 <reference doi="10.1073/pnas.1105499108">\r
1546                                   <desc>MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda</desc>\r
1547                                 </reference>\r
1548                                 <clade>\r
1549                                   <taxonomy>\r
1550                                     <id provider="uniprot">6656</id>\r
1551                                     <scientific_name>Arthropoda</scientific_name>\r
1552                                     <rank>phylum</rank>\r
1553                                   </taxonomy>\r
1554                                   <reference doi="10.1098/rspb.2010.0590">\r
1555                                     <desc>A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata</desc>\r
1556                                   </reference>\r
1557                                   <clade>\r
1558                                     <taxonomy>\r
1559                                       <id provider="uniprot">197563</id>\r
1560                                       <scientific_name>Mandibulata</scientific_name>\r
1561                                     </taxonomy>\r
1562                                     <reference doi="doi:10.1038/ncomms3485">\r
1563                                       <desc>Arthropod fossil data increase congruence of morphological and molecular phylogenies</desc>\r
1564                                     </reference>\r
1565                                     <reference>\r
1566                                     </reference>\r
1567                                     <clade>\r
1568                                       <taxonomy>\r
1569                                         <id provider="uniprot">197562</id>\r
1570                                         <scientific_name>Pancrustacea</scientific_name>\r
1571                                       </taxonomy>\r
1572                                       <clade>\r
1573                                         <taxonomy>\r
1574                                           <id provider="uniprot">6960</id>\r
1575                                           <scientific_name>Hexapoda</scientific_name>\r
1576                                           <rank>superclass</rank>\r
1577                                         </taxonomy>\r
1578                                         <clade>\r
1579                                           <taxonomy>\r
1580                                             <id provider="uniprot">50557</id>\r
1581                                             <scientific_name>Insecta</scientific_name>\r
1582                                             <rank>class</rank>\r
1583                                           </taxonomy>\r
1584                                           <reference doi="10.1146/annurev-ento-120710-100538">\r
1585                                             <desc>Advances in Insect Phylogeny at the Dawn of the Postgenomic Era</desc>\r
1586                                           </reference>\r
1587                                           <reference>\r
1588                                           </reference>\r
1589                                           <clade>\r
1590                                             <taxonomy>\r
1591                                               <id provider="uniprot">33340</id>\r
1592                                               <scientific_name>Neoptera</scientific_name>\r
1593                                               <rank>subclass</rank>\r
1594                                             </taxonomy>\r
1595                                             <clade>\r
1596                                               <taxonomy>\r
1597                                                 <id provider="uniprot">33392</id>\r
1598                                                 <scientific_name>Endopterygota</scientific_name>\r
1599                                                 <synonym>Holometabola</synonym>\r
1600                                                 <rank>infraclass</rank>\r
1601                                               </taxonomy>\r
1602                                               <clade>\r
1603                                                 <name>Mecopterida &amp; Neuropteroidea</name>\r
1604                                                 <clade>\r
1605                                                   <taxonomy>\r
1606                                                     <scientific_name>Mecopterida</scientific_name>\r
1607                                                   </taxonomy>\r
1608                                                   <reference>\r
1609                                                     <desc>The position of the Hymenoptera within the Holometabola as inferred from the mitochondrial genome of Perga condei</desc>\r
1610                                                   </reference>\r
1611                                                   <clade>\r
1612                                                     <taxonomy>\r
1613                                                       <id provider="uniprot">7147</id>\r
1614                                                       <scientific_name>Diptera</scientific_name>\r
1615                                                       <rank>order</rank>\r
1616                                                     </taxonomy>\r
1617                                                     <clade>\r
1618                                                       <taxonomy>\r
1619                                                         <id provider="uniprot">7215</id>\r
1620                                                         <scientific_name>Drosophila</scientific_name>\r
1621                                                         <common_name>fruit flies</common_name>\r
1622                                                         <rank>genus</rank>\r
1623                                                       </taxonomy>\r
1624                                                       <reference doi="10.1534/genetics.111.126540">\r
1625                                                         <desc>The 19 Genomes of Drosophila: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research</desc>\r
1626                                                       </reference>\r
1627                                                       <clade>\r
1628                                                         <taxonomy>\r
1629                                                           <id provider="uniprot">32341</id>\r
1630                                                           <scientific_name>Sophophora</scientific_name>\r
1631                                                           <rank>subgenus</rank>\r
1632                                                         </taxonomy>\r
1633                                                         <clade>\r
1634                                                           <name>melanogaster &amp; pseudoobscura subgroups</name>\r
1635                                                           <clade>\r
1636                                                             <taxonomy>\r
1637                                                               <id provider="uniprot">32346</id>\r
1638                                                               <scientific_name>melanogaster group</scientific_name>\r
1639                                                             </taxonomy>\r
1640                                                             <clade>\r
1641                                                               <taxonomy>\r
1642                                                                 <id provider="uniprot">32351</id>\r
1643                                                                 <scientific_name>melanogaster subgroup</scientific_name>\r
1644                                                               </taxonomy>\r
1645                                                               <clade>\r
1646                                                                 <name>DROSE &amp; DROSI &amp; DROME &amp; DROYA</name>\r
1647                                                                 <clade>\r
1648                                                                   <name>DROSE &amp; DROSI &amp; DROME</name>\r
1649                                                                   <clade>\r
1650                                                                     <name>DROSE &amp; DROSI</name>\r
1651                                                                     <clade>\r
1652                                                                       <taxonomy>\r
1653                                                                         <id provider="uniprot">7238</id>\r
1654                                                                         <code>DROSE</code>\r
1655                                                                         <scientific_name>Drosophila sechellia</scientific_name>\r
1656                                                                         <common_name>Fruit fly</common_name>\r
1657                                                                         <rank>species</rank>\r
1658                                                                       </taxonomy>\r
1659                                                                     </clade>\r
1660                                                                     <clade>\r
1661                                                                       <taxonomy>\r
1662                                                                         <id provider="uniprot">7240</id>\r
1663                                                                         <code>DROSI</code>\r
1664                                                                         <scientific_name>Drosophila simulans</scientific_name>\r
1665                                                                         <common_name>Fruit fly</common_name>\r
1666                                                                         <rank>species</rank>\r
1667                                                                       </taxonomy>\r
1668                                                                     </clade>\r
1669                                                                   </clade>\r
1670                                                                   <clade>\r
1671                                                                     <taxonomy>\r
1672                                                                       <id provider="uniprot">7227</id>\r
1673                                                                       <code>DROME</code>\r
1674                                                                       <scientific_name>Drosophila melanogaster</scientific_name>\r
1675                                                                       <common_name>Fruit fly</common_name>\r
1676                                                                       <rank>species</rank>\r
1677                                                                       <uri>http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg</uri>\r
1678                                                                     </taxonomy>\r
1679                                                                   </clade>\r
1680                                                                 </clade>\r
1681                                                                 <clade>\r
1682                                                                   <taxonomy>\r
1683                                                                     <id provider="uniprot">7245</id>\r
1684                                                                     <code>DROYA</code>\r
1685                                                                     <scientific_name>Drosophila yakuba</scientific_name>\r
1686                                                                     <common_name>Fruit fly</common_name>\r
1687                                                                     <rank>species</rank>\r
1688                                                                   </taxonomy>\r
1689                                                                 </clade>\r
1690                                                               </clade>\r
1691                                                               <clade>\r
1692                                                                 <taxonomy>\r
1693                                                                   <id provider="uniprot">7220</id>\r
1694                                                                   <code>DROER</code>\r
1695                                                                   <scientific_name>Drosophila erecta</scientific_name>\r
1696                                                                   <common_name>Fruit fly</common_name>\r
1697                                                                   <rank>species</rank>\r
1698                                                                 </taxonomy>\r
1699                                                               </clade>\r
1700                                                             </clade>\r
1701                                                             <clade>\r
1702                                                               <taxonomy>\r
1703                                                                 <id provider="uniprot">7217</id>\r
1704                                                                 <code>DROAN</code>\r
1705                                                                 <scientific_name>Drosophila ananassae</scientific_name>\r
1706                                                                 <common_name>Fruit fly</common_name>\r
1707                                                                 <rank>species</rank>\r
1708                                                               </taxonomy>\r
1709                                                             </clade>\r
1710                                                           </clade>\r
1711                                                           <clade>\r
1712                                                             <taxonomy>\r
1713                                                               <id provider="uniprot">32358</id>\r
1714                                                               <scientific_name>pseudoobscura subgroup</scientific_name>\r
1715                                                             </taxonomy>\r
1716                                                             <clade>\r
1717                                                               <taxonomy>\r
1718                                                                 <id provider="uniprot">7234</id>\r
1719                                                                 <code>DROPE</code>\r
1720                                                                 <scientific_name>Drosophila persimilis</scientific_name>\r
1721                                                                 <common_name>Fruit fly</common_name>\r
1722                                                                 <rank>species</rank>\r
1723                                                               </taxonomy>\r
1724                                                             </clade>\r
1725                                                             <clade>\r
1726                                                               <taxonomy>\r
1727                                                                 <id provider="uniprot">46245</id>\r
1728                                                                 <code>DROPS</code>\r
1729                                                                 <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1730                                                                 <common_name>Fruit fly</common_name>\r
1731                                                                 <rank>subspecies</rank>\r
1732                                                                 <uri>http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg</uri>\r
1733                                                               </taxonomy>\r
1734                                                             </clade>\r
1735                                                           </clade>\r
1736                                                         </clade>\r
1737                                                         <clade>\r
1738                                                           <taxonomy>\r
1739                                                             <id provider="uniprot">7260</id>\r
1740                                                             <code>DROWI</code>\r
1741                                                             <scientific_name>Drosophila willistoni</scientific_name>\r
1742                                                             <common_name>Fruit fly</common_name>\r
1743                                                             <rank>species</rank>\r
1744                                                           </taxonomy>\r
1745                                                         </clade>\r
1746                                                       </clade>\r
1747                                                       <clade>\r
1748                                                         <name>Drosophila subgenus &amp; Hawaiian Drosophila</name>\r
1749                                                         <clade>\r
1750                                                           <name>Drosophila subgenus</name>\r
1751                                                           <clade>\r
1752                                                             <taxonomy>\r
1753                                                               <id provider="uniprot">7230</id>\r
1754                                                               <code>DROMO</code>\r
1755                                                               <scientific_name>Drosophila mojavensis</scientific_name>\r
1756                                                               <common_name>Fruit fly</common_name>\r
1757                                                               <rank>species</rank>\r
1758                                                             </taxonomy>\r
1759                                                           </clade>\r
1760                                                           <clade>\r
1761                                                             <taxonomy>\r
1762                                                               <id provider="uniprot">7244</id>\r
1763                                                               <code>DROVI</code>\r
1764                                                               <scientific_name>Drosophila virilis</scientific_name>\r
1765                                                               <common_name>Fruit fly</common_name>\r
1766                                                               <rank>species</rank>\r
1767                                                             </taxonomy>\r
1768                                                           </clade>\r
1769                                                         </clade>\r
1770                                                         <clade>\r
1771                                                           <taxonomy>\r
1772                                                             <id provider="uniprot">7222</id>\r
1773                                                             <code>DROGR</code>\r
1774                                                             <scientific_name>Drosophila grimshawi</scientific_name>\r
1775                                                             <common_name>Fruit fly</common_name>\r
1776                                                             <synonym>Idiomyia grimshawi</synonym>\r
1777                                                             <rank>species</rank>\r
1778                                                             <uri>http://www.pacificislandbooks.com/fruitf~1.jpg</uri>\r
1779                                                           </taxonomy>\r
1780                                                         </clade>\r
1781                                                       </clade>\r
1782                                                     </clade>\r
1783                                                     <clade>\r
1784                                                       <taxonomy>\r
1785                                                         <id provider="uniprot">7157</id>\r
1786                                                         <scientific_name>Culicidae</scientific_name>\r
1787                                                         <common_name>mosquitos</common_name>\r
1788                                                         <rank>family</rank>\r
1789                                                       </taxonomy>\r
1790                                                       <clade>\r
1791                                                         <taxonomy>\r
1792                                                           <id provider="uniprot">7159</id>\r
1793                                                           <code>AEDAE</code>\r
1794                                                           <scientific_name>Aedes aegypti</scientific_name>\r
1795                                                           <common_name>Yellowfever mosquito</common_name>\r
1796                                                           <synonym>Culex aegypti</synonym>\r
1797                                                           <rank>species</rank>\r
1798                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1799                                                         </taxonomy>\r
1800                                                       </clade>\r
1801                                                       <clade>\r
1802                                                         <taxonomy>\r
1803                                                           <id provider="uniprot">7165</id>\r
1804                                                           <code>ANOGA</code>\r
1805                                                           <scientific_name>Anopheles gambiae</scientific_name>\r
1806                                                           <common_name>African malaria mosquito</common_name>\r
1807                                                           <rank>species</rank>\r
1808                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1809                                                         </taxonomy>\r
1810                                                       </clade>\r
1811                                                       <clade>\r
1812                                                         <taxonomy>\r
1813                                                           <id provider="uniprot">7175</id>\r
1814                                                           <code>CULPI</code>\r
1815                                                           <scientific_name>Culex pipiens</scientific_name>\r
1816                                                           <common_name>House mosquito</common_name>\r
1817                                                           <rank>species</rank>\r
1818                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/35/Culex_pipiens_2007-1.jpg</uri>\r
1819                                                         </taxonomy>\r
1820                                                       </clade>\r
1821                                                     </clade>\r
1822                                                   </clade>\r
1823                                                   <clade>\r
1824                                                     <taxonomy>\r
1825                                                       <id provider="uniprot">37567</id>\r
1826                                                       <scientific_name>Ditrysia</scientific_name>\r
1827                                                     </taxonomy>\r
1828                                                     <clade>\r
1829                                                       <taxonomy>\r
1830                                                         <id provider="uniprot">7091</id>\r
1831                                                         <code>BOMMO</code>\r
1832                                                         <scientific_name>Bombyx mori</scientific_name>\r
1833                                                         <common_name>Silk moth</common_name>\r
1834                                                         <rank>species</rank>\r
1835                                                         <uri>http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg</uri>\r
1836                                                       </taxonomy>\r
1837                                                     </clade>\r
1838                                                     <clade>\r
1839                                                       <taxonomy>\r
1840                                                         <id provider="uniprot">13037</id>\r
1841                                                         <code>DANPL</code>\r
1842                                                         <scientific_name>Danaus plexippus</scientific_name>\r
1843                                                         <common_name>Monarch butterfly</common_name>\r
1844                                                         <rank>species</rank>\r
1845                                                         <uri>http://bugguide.net/images/cache/7QFRQQYRJKQ0X0YQM0Z02000U0ORKQR090H07QBRFKNRQQH0P0YRE0YRZQARLQWR70JQG09RYKDQJKCQFKFQJKTQI0.jpg</uri>\r
1846                                                         <uri>http://bugguide.net/images/raw/7RTZXR3Z6RRHKZHH8RVL8RRHMZKHERKHQZLHGRLHPR1LERQH4RCZYL1LGRHH7ZZHER1LGRSH7R6L.jpg</uri>\r
1847                                                       </taxonomy>\r
1848                                                     </clade>\r
1849                                                   </clade>\r
1850                                                 </clade>\r
1851                                                 <clade>\r
1852                                                   <taxonomy>\r
1853                                                     <id provider="uniprot">41088</id>\r
1854                                                     <scientific_name>Cucujiformia</scientific_name>\r
1855                                                     <rank>infraorder</rank>\r
1856                                                   </taxonomy>\r
1857                                                   <clade>\r
1858                                                     <taxonomy>\r
1859                                                       <id provider="uniprot">217634</id>\r
1860                                                       <code>ANOGL</code>\r
1861                                                       <scientific_name>Anoplophora glabripennis</scientific_name>\r
1862                                                       <common_name>Asian longhorn beetle</common_name>\r
1863                                                       <synonym>Anoplophora nobilis</synonym>\r
1864                                                       <rank>species</rank>\r
1865                                                       <uri>http://bugguide.net/images/cache/WZMLBZXL2Z2HTH4HHR2H3H2HJH9H9Z5LJH5LWZ7LAZSLTH4HPZXHDHKLVZEH9ZEHRRPHJH7LAZPHZR4L3H7H3H9HZR.jpg</uri>\r
1866                                                     </taxonomy>\r
1867                                                   </clade>\r
1868                                                   <clade>\r
1869                                                     <taxonomy>\r
1870                                                       <id provider="uniprot">7070</id>\r
1871                                                       <code>TRICA</code>\r
1872                                                       <scientific_name>Tribolium castaneum</scientific_name>\r
1873                                                       <common_name>Red flour beetle</common_name>\r
1874                                                       <rank>species</rank>\r
1875                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/da/Tribolium_castaneum.jpg</uri>\r
1876                                                     </taxonomy>\r
1877                                                   </clade>\r
1878                                                 </clade>\r
1879                                               </clade>\r
1880                                               <clade>\r
1881                                                 <taxonomy>\r
1882                                                   <id provider="uniprot">7400</id>\r
1883                                                   <scientific_name>Apocrita</scientific_name>\r
1884                                                   <common_name>wasps, ants and bees</common_name>\r
1885                                                 </taxonomy>\r
1886                                                 <clade>\r
1887                                                   <taxonomy>\r
1888                                                     <id provider="uniprot">7434</id>\r
1889                                                     <scientific_name>Aculeata</scientific_name>\r
1890                                                     <rank>suborder</rank>\r
1891                                                   </taxonomy>\r
1892                                                   <clade>\r
1893                                                     <taxonomy>\r
1894                                                       <id provider="uniprot">36668</id>\r
1895                                                       <scientific_name>Formicidae</scientific_name>\r
1896                                                       <rank>family</rank>\r
1897                                                     </taxonomy>\r
1898                                                     <clade>\r
1899                                                       <taxonomy>\r
1900                                                         <id provider="uniprot">34695</id>\r
1901                                                         <scientific_name>Myrmicinae</scientific_name>\r
1902                                                         <rank>subfamily</rank>\r
1903                                                       </taxonomy>\r
1904                                                       <clade>\r
1905                                                         <taxonomy>\r
1906                                                           <id provider="uniprot">12957</id>\r
1907                                                           <code>ATTCE</code>\r
1908                                                           <scientific_name>Atta cephalotes</scientific_name>\r
1909                                                           <authority>Linnaeus, 1758</authority>\r
1910                                                           <common_name>Leafcutter ant</common_name>\r
1911                                                           <rank>species</rank>\r
1912                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg</uri>\r
1913                                                         </taxonomy>\r
1914                                                       </clade>\r
1915                                                       <clade>\r
1916                                                         <taxonomy>\r
1917                                                           <id provider="uniprot">103372</id>\r
1918                                                           <code>ACREC</code>\r
1919                                                           <scientific_name>Acromyrmex echinatior</scientific_name>\r
1920                                                           <authority>Forel, 1899</authority>\r
1921                                                           <common_name>Panamanian leafcutter ant</common_name>\r
1922                                                           <synonym>Acromyrmex octospinosus echinatior</synonym>\r
1923                                                           <rank>species</rank>\r
1924                                                           <uri>http://hymenopteragenome.org/acromyrmex/sites/hymenopteragenome.org.acromyrmex/files/Acromyrmex_echinatior2.jpg</uri>\r
1925                                                         </taxonomy>\r
1926                                                       </clade>\r
1927                                                     </clade>\r
1928                                                     <clade>\r
1929                                                       <taxonomy>\r
1930                                                         <id provider="uniprot">104421</id>\r
1931                                                         <code>CAMFO</code>\r
1932                                                         <scientific_name>Camponotus floridanus</scientific_name>\r
1933                                                         <authority>Buckley, 1866</authority>\r
1934                                                         <common_name>Florida carpenter ant</common_name>\r
1935                                                         <rank>species</rank>\r
1936                                                         <uri>http://bugguide.net/images/cache/5RLH6RRHXRALZZ9LZZ6L3LBLXZBL2RFZHZ9L7ZKH4RDZ3L3Z2RZHKZCLMZKH4R0H6R3Z6RSHMZBL5RRH5ROLKZELLZ.jpg</uri>\r
1937                                                       </taxonomy>\r
1938                                                     </clade>\r
1939                                                   </clade>\r
1940                                                   <clade>\r
1941                                                     <taxonomy>\r
1942                                                       <id provider="uniprot">7460</id>\r
1943                                                       <code>APIME</code>\r
1944                                                       <scientific_name>Apis mellifera</scientific_name>\r
1945                                                       <common_name>Honeybee</common_name>\r
1946                                                       <rank>species</rank>\r
1947                                                       <uri>http://www.floridanature.org/photos/Apis_mellifera_6b_&amp;_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg</uri>\r
1948                                                     </taxonomy>\r
1949                                                   </clade>\r
1950                                                 </clade>\r
1951                                                 <clade>\r
1952                                                   <taxonomy>\r
1953                                                     <id provider="uniprot">7425</id>\r
1954                                                     <code>NASVI</code>\r
1955                                                     <scientific_name>Nasonia vitripennis</scientific_name>\r
1956                                                     <common_name>Parasitic wasp</common_name>\r
1957                                                     <rank>species</rank>\r
1958                                                     <uri>http://www.freshpond.org/nasonia.jpg</uri>\r
1959                                                   </taxonomy>\r
1960                                                 </clade>\r
1961                                               </clade>\r
1962                                               <clade>\r
1963                                                 <taxonomy>\r
1964                                                   <id provider="uniprot">33341</id>\r
1965                                                   <scientific_name>Orthopteroidea</scientific_name>\r
1966                                                   <rank>infraclass</rank>\r
1967                                                 </taxonomy>\r
1968                                                 <clade>\r
1969                                                   <taxonomy>\r
1970                                                     <id provider="uniprot">6970</id>\r
1971                                                     <scientific_name>Dictyoptera</scientific_name>\r
1972                                                     <rank>superorder</rank>\r
1973                                                   </taxonomy>\r
1974                                                   <clade>\r
1975                                                     <taxonomy>\r
1976                                                       <id provider="uniprot">6973</id>\r
1977                                                       <code>BLAGE</code>\r
1978                                                       <scientific_name>Blattella germanica</scientific_name>\r
1979                                                       <common_name>German cockroach</common_name>\r
1980                                                       <synonym>Blatta germanica</synonym>\r
1981                                                       <rank>species</rank>\r
1982                                                       <uri>http://www.biopix.com/photosmedium/Blattella%20germanica%2000017.JPG</uri>\r
1983                                                     </taxonomy>\r
1984                                                   </clade>\r
1985                                                   <clade>\r
1986                                                     <taxonomy>\r
1987                                                       <id provider="uniprot">136037</id>\r
1988                                                       <code>ZOONE</code>\r
1989                                                       <scientific_name>Zootermopsis nevadensis</scientific_name>\r
1990                                                       <common_name>Dampwood termite</common_name>\r
1991                                                       <rank>species</rank>\r
1992                                                       <uri>http://bugguide.net/images/cache/GQA0PQ10VQPK4KAKRKWKSKEKLKWKPQZS5KBK1QCK7KJ05KOK8KAKRK9K4QUK6Q10RKWKHKT02QWKSKEK5Q9KPQD0PQ.jpg</uri>\r
1993                                                     </taxonomy>\r
1994                                                   </clade>\r
1995                                                 </clade>\r
1996                                                 <clade>\r
1997                                                   <taxonomy>\r
1998                                                     <id provider="uniprot">6993</id>\r
1999                                                     <scientific_name>Orthoptera</scientific_name>\r
2000                                                     <rank>order</rank>\r
2001                                                   </taxonomy>\r
2002                                                   <clade>\r
2003                                                     <taxonomy>\r
2004                                                       <id provider="uniprot">7009</id>\r
2005                                                       <code>SCHAM</code>\r
2006                                                       <scientific_name>Schistocerca americana</scientific_name>\r
2007                                                       <common_name>American grasshopper</common_name>\r
2008                                                       <rank>species</rank>\r
2009                                                       <uri>http://bugguide.net/images/cache/BH7HOHIHZRZLAZXLVZQL4ZKL4Z4H6Z4HRRNHLR5HZR2HAHGHAHSLAHKL1H7HDH7H3HUH1ZXLUZGL3H2HAHZLAHXH.jpg</uri>\r
2010                                                     </taxonomy>\r
2011                                                   </clade>\r
2012                                                   <clade>\r
2013                                                     <taxonomy>\r
2014                                                       <id provider="uniprot">51074</id>\r
2015                                                       <code>GRYPE</code>\r
2016                                                       <scientific_name>Gryllus pennsylvanicus</scientific_name>\r
2017                                                       <common_name>Field cricket</common_name>\r
2018                                                       <rank>species</rank>\r
2019                                                       <uri>http://bugguide.net/images/raw/GL9Z5L9Z8LJHWHHR6HRREHVZUHCHIH8Z7HVHMHGZ7HTHQL6ZXHOHWH3H5LUZ7L9ZRLVH5HDHQL.jpg</uri>\r
2020                                                     </taxonomy>\r
2021                                                   </clade>\r
2022                                                 </clade>\r
2023                                               </clade>\r
2024                                             </clade>\r
2025                                             <clade>\r
2026                                               <taxonomy>\r
2027                                                 <id provider="uniprot">33342</id>\r
2028                                                 <scientific_name>Paraneoptera</scientific_name>\r
2029                                                 <rank>infraclass</rank>\r
2030                                               </taxonomy>\r
2031                                               <clade>\r
2032                                                 <taxonomy>\r
2033                                                   <id provider="uniprot">7524</id>\r
2034                                                   <scientific_name>Hemiptera</scientific_name>\r
2035                                                   <rank>order</rank>\r
2036                                                 </taxonomy>\r
2037                                                 <clade>\r
2038                                                   <taxonomy>\r
2039                                                     <id provider="uniprot">33351</id>\r
2040                                                     <scientific_name>Panheteroptera</scientific_name>\r
2041                                                   </taxonomy>\r
2042                                                   <clade>\r
2043                                                     <taxonomy>\r
2044                                                       <id provider="uniprot">7536</id>\r
2045                                                       <code>ONCFA</code>\r
2046                                                       <scientific_name>Oncopeltus fasciatus</scientific_name>\r
2047                                                       <common_name>Large milkweed bug</common_name>\r
2048                                                       <rank>species</rank>\r
2049                                                       <uri>http://bugguide.net/images/cache/309QLSWQT0IKUKSK2KSKUKRKUKGKBKRKNK6QD05QC05Q6KZKPKGQD00K9KGQ2KLKWK8QV0KKO0EQV0EQNK8Q2KGQ10.jpg</uri>\r
2050                                                     </taxonomy>\r
2051                                                   </clade>\r
2052                                                   <clade>\r
2053                                                     <taxonomy>\r
2054                                                       <id provider="uniprot">13249</id>\r
2055                                                       <code>RHOPR</code>\r
2056                                                       <scientific_name>Rhodnius prolixus</scientific_name>\r
2057                                                       <common_name>Triatomid bug</common_name>\r
2058                                                       <rank>species</rank>\r
2059                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
2060                                                     </taxonomy>\r
2061                                                   </clade>\r
2062                                                 </clade>\r
2063                                                 <clade>\r
2064                                                   <taxonomy>\r
2065                                                     <id provider="uniprot">7029</id>\r
2066                                                     <code>ACYPI</code>\r
2067                                                     <scientific_name>Acyrthosiphon pisum</scientific_name>\r
2068                                                     <common_name>Pea aphid</common_name>\r
2069                                                     <rank>species</rank>\r
2070                                                     <uri>http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg</uri>\r
2071                                                   </taxonomy>\r
2072                                                 </clade>\r
2073                                               </clade>\r
2074                                               <clade>\r
2075                                                 <taxonomy>\r
2076                                                   <id provider="uniprot">121224</id>\r
2077                                                   <code>PEDHC</code>\r
2078                                                   <scientific_name>Pediculus humanus subsp. corporis</scientific_name>\r
2079                                                   <common_name>Body louse</common_name>\r
2080                                                   <rank>subspecies</rank>\r
2081                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/92/Body_lice.jpg/436px-Body_lice.jpg</uri>\r
2082                                                 </taxonomy>\r
2083                                               </clade>\r
2084                                             </clade>\r
2085                                           </clade>\r
2086                                           <clade>\r
2087                                             <taxonomy>\r
2088                                               <id provider="uniprot">568273</id>\r
2089                                               <scientific_name>Machilis germanica</scientific_name>\r
2090                                               <rank>species</rank>\r
2091                                               <uri>http://www.lucianabartolini.net/Immagini/Microcoryphia/Machilis-sp-02.jpg</uri>\r
2092                                             </taxonomy>\r
2093                                           </clade>\r
2094                                         </clade>\r
2095                                         <clade>\r
2096                                           <taxonomy>\r
2097                                             <id provider="uniprot">383857</id>\r
2098                                             <scientific_name>Campodea fragilis</scientific_name>\r
2099                                             <rank>species</rank>\r
2100                                             <uri>http://images.wikia.com/insect/images/3/3c/Campodea_fragilis.jpg</uri>\r
2101                                           </taxonomy>\r
2102                                         </clade>\r
2103                                       </clade>\r
2104                                       <clade>\r
2105                                         <taxonomy>\r
2106                                           <id provider="uniprot">6657</id>\r
2107                                           <scientific_name>Crustacea</scientific_name>\r
2108                                           <rank>subphylum</rank>\r
2109                                         </taxonomy>\r
2110                                         <clade>\r
2111                                           <taxonomy>\r
2112                                             <id provider="uniprot">6658</id>\r
2113                                             <scientific_name>Branchiopoda</scientific_name>\r
2114                                             <rank>class</rank>\r
2115                                           </taxonomy>\r
2116                                           <clade>\r
2117                                             <taxonomy>\r
2118                                               <id provider="uniprot">6661</id>\r
2119                                               <code>ARTSF</code>\r
2120                                               <scientific_name>Artemia franciscana</scientific_name>\r
2121                                               <common_name>Brine shrimp</common_name>\r
2122                                               <synonym>Artemia sanfranciscana</synonym>\r
2123                                               <rank>species</rank>\r
2124                                               <uri>http://www.aslo.org/photopost/data/518/medium/8Brine_shrimp.jpg</uri>\r
2125                                             </taxonomy>\r
2126                                           </clade>\r
2127                                           <clade>\r
2128                                             <taxonomy>\r
2129                                               <id provider="uniprot">6669</id>\r
2130                                               <code>DAPPU</code>\r
2131                                               <scientific_name>Daphnia pulex</scientific_name>\r
2132                                               <common_name>Water flea</common_name>\r
2133                                               <rank>species</rank>\r
2134                                               <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
2135                                             </taxonomy>\r
2136                                           </clade>\r
2137                                         </clade>\r
2138                                         <clade>\r
2139                                           <taxonomy>\r
2140                                             <id provider="uniprot">6706</id>\r
2141                                             <code>HOMAM</code>\r
2142                                             <scientific_name>Homarus americanus</scientific_name>\r
2143                                             <common_name>American lobster</common_name>\r
2144                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/5e/Lobster.jpg</uri>\r
2145                                           </taxonomy>\r
2146                                         </clade>\r
2147                                       </clade>\r
2148                                     </clade>\r
2149                                     <clade>\r
2150                                       <taxonomy>\r
2151                                         <id provider="uniprot">61985</id>\r
2152                                         <scientific_name>Myriapoda</scientific_name>\r
2153                                         <rank>subphylum</rank>\r
2154                                       </taxonomy>\r
2155                                       <clade>\r
2156                                         <taxonomy>\r
2157                                           <id provider="uniprot">7553</id>\r
2158                                           <scientific_name>Diplopoda</scientific_name>\r
2159                                           <common_name>millipedes</common_name>\r
2160                                           <rank>class</rank>\r
2161                                         </taxonomy>\r
2162                                         <clade>\r
2163                                           <taxonomy>\r
2164                                             <id provider="uniprot">118561</id>\r
2165                                             <scientific_name>Helminthomorpha</scientific_name>\r
2166                                             <rank>subclass</rank>\r
2167                                           </taxonomy>\r
2168                                           <clade>\r
2169                                             <taxonomy>\r
2170                                               <id provider="uniprot">364406</id>\r
2171                                               <code>ANTGC</code>\r
2172                                               <scientific_name>Antrokoreana gracilipes</scientific_name>\r
2173                                               <common_name>Troglobite millipede</common_name>\r
2174                                               <rank>species</rank>\r
2175                                             </taxonomy>\r
2176                                           </clade>\r
2177                                           <clade>\r
2178                                             <taxonomy>\r
2179                                               <id provider="uniprot">174156</id>\r
2180                                               <code>NARAN</code>\r
2181                                               <scientific_name>Narceus annularis</scientific_name>\r
2182                                               <common_name>Millipede</common_name>\r
2183                                               <rank>species</rank>\r
2184                                               <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
2185                                             </taxonomy>\r
2186                                           </clade>\r
2187                                         </clade>\r
2188                                         <clade>\r
2189                                           <taxonomy>\r
2190                                             <id provider="uniprot">52428</id>\r
2191                                             <scientific_name>Polyxenus lagurus</scientific_name>\r
2192                                             <common_name>bristly millipede</common_name>\r
2193                                             <rank>species</rank>\r
2194                                             <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
2195                                           </taxonomy>\r
2196                                         </clade>\r
2197                                       </clade>\r
2198                                       <clade>\r
2199                                         <taxonomy>\r
2200                                           <id provider="uniprot">7540</id>\r
2201                                           <scientific_name>Chilopoda</scientific_name>\r
2202                                           <common_name>centipedes</common_name>\r
2203                                           <rank>class</rank>\r
2204                                         </taxonomy>\r
2205                                         <clade>\r
2206                                           <taxonomy>\r
2207                                             <id provider="uniprot">29022</id>\r
2208                                             <code>SCUCO</code>\r
2209                                             <scientific_name>Scutigera coleoptrata</scientific_name>\r
2210                                             <common_name>House centipede</common_name>\r
2211                                             <rank>species</rank>\r
2212                                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
2213                                           </taxonomy>\r
2214                                         </clade>\r
2215                                         <clade>\r
2216                                           <taxonomy>\r
2217                                             <id provider="uniprot">126957</id>\r
2218                                             <code>STRMM</code>\r
2219                                             <scientific_name>Strigamia maritima</scientific_name>\r
2220                                             <common_name>European centipede</common_name>\r
2221                                             <synonym>Geophilus maritimus</synonym>\r
2222                                             <rank>species</rank>\r
2223                                             <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
2224                                           </taxonomy>\r
2225                                         </clade>\r
2226                                       </clade>\r
2227                                     </clade>\r
2228                                   </clade>\r
2229                                   <clade>\r
2230                                     <taxonomy>\r
2231                                       <id provider="uniprot">6843</id>\r
2232                                       <scientific_name>Chelicerata</scientific_name>\r
2233                                       <rank>subphylum</rank>\r
2234                                     </taxonomy>\r
2235                                     <reference doi="10.1016/j.ympev.2009.08.014">\r
2236                                       <desc>A 454 sequencing approach for large scale phylogenomic analysis of the common emperor scorpion (Pandinus imperator)</desc>\r
2237                                     </reference>\r
2238                                     <reference>\r
2239                                     </reference>\r
2240                                     <reference>\r
2241                                     </reference>\r
2242                                     <reference>\r
2243                                     </reference>\r
2244                                     <clade>\r
2245                                       <name>Arachnida &amp; Merostomata</name>\r
2246                                       <taxonomy>\r
2247                                         <id>Sea spider</id>\r
2248                                       </taxonomy>\r
2249                                       <clade>\r
2250                                         <taxonomy>\r
2251                                           <id provider="uniprot">6854</id>\r
2252                                           <scientific_name>Arachnida</scientific_name>\r
2253                                           <rank>class</rank>\r
2254                                         </taxonomy>\r
2255                                         <clade>\r
2256                                           <taxonomy>\r
2257                                             <id provider="uniprot">6933</id>\r
2258                                             <scientific_name>Acari</scientific_name>\r
2259                                             <common_name>mites &amp; ticks</common_name>\r
2260                                             <rank>subclass</rank>\r
2261                                           </taxonomy>\r
2262                                           <clade>\r
2263                                             <taxonomy>\r
2264                                               <id provider="uniprot">6945</id>\r
2265                                               <code>IXOSC</code>\r
2266                                               <scientific_name>Ixodes scapularis</scientific_name>\r
2267                                               <common_name>Black-legged tick</common_name>\r
2268                                               <synonym>Deer tick</synonym>\r
2269                                               <rank>species</rank>\r
2270                                               <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
2271                                             </taxonomy>\r
2272                                           </clade>\r
2273                                           <clade>\r
2274                                             <taxonomy>\r
2275                                               <id provider="uniprot">32264</id>\r
2276                                               <code>TETUR</code>\r
2277                                               <scientific_name>Tetranychus urticae</scientific_name>\r
2278                                               <common_name>Two-spotted spider mite</common_name>\r
2279                                               <rank>species</rank>\r
2280                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/c/c5/Tetranychus-urticae.jpg/472px-Tetranychus-urticae.jpg</uri>\r
2281                                             </taxonomy>\r
2282                                           </clade>\r
2283                                         </clade>\r
2284                                         <clade>\r
2285                                           <taxonomy>\r
2286                                             <id provider="uniprot">34649</id>\r
2287                                             <code>MESMA</code>\r
2288                                             <scientific_name>Mesobuthus martensii</scientific_name>\r
2289                                             <authority>Karsch, 1879</authority>\r
2290                                             <common_name>Manchurian scorpion</common_name>\r
2291                                             <synonym>Buthus martensi</synonym>\r
2292                                             <synonym>Buthus martensii</synonym>\r
2293                                             <rank>species</rank>\r
2294                                             <uri>http://www.ntnu.no/ub/scorpion-files/m_martensii1.jpg</uri>\r
2295                                           </taxonomy>\r
2296                                         </clade>\r
2297                                       </clade>\r
2298                                       <clade>\r
2299                                         <taxonomy>\r
2300                                           <id provider="uniprot">6850</id>\r
2301                                           <code>LIMPO</code>\r
2302                                           <scientific_name>Limulus polyphemus</scientific_name>\r
2303                                           <common_name>Atlantic horseshoe crab</common_name>\r
2304                                           <rank>species</rank>\r
2305                                           <uri>http://www.biopix.eu/photosmedium/Limulus%20polyphemus%2000008.JPG</uri>\r
2306                                         </taxonomy>\r
2307                                       </clade>\r
2308                                     </clade>\r
2309                                     <clade>\r
2310                                       <taxonomy>\r
2311                                         <id provider="uniprot">258330</id>\r
2312                                         <scientific_name>Ammothea hilgendorfi</scientific_name>\r
2313                                         <rank>species</rank>\r
2314                                         <uri>http://nathistoc.bio.uci.edu/Pycnogonida/DSCF0073b.jpg</uri>\r
2315                                       </taxonomy>\r
2316                                     </clade>\r
2317                                   </clade>\r
2318                                 </clade>\r
2319                                 <clade>\r
2320                                   <taxonomy>\r
2321                                     <id provider="uniprot">488523</id>\r
2322                                     <scientific_name>Euperipatoides kanangrensis</scientific_name>\r
2323                                     <authority>Reid, 1996</authority>\r
2324                                     <rank>species</rank>\r
2325                                     <uri>http://content60.eol.org/content/2012/04/05/01/26600_580_360.jpg</uri>\r
2326                                     <uri>http://upload.wikimedia.org/wikipedia/commons/6/67/Euperipatoides_kanangrensis_crop.jpg</uri>\r
2327                                   </taxonomy>\r
2328                                 </clade>\r
2329                               </clade>\r
2330                               <clade>\r
2331                                 <taxonomy>\r
2332                                   <id provider="uniprot">232323</id>\r
2333                                   <code>HYPDU</code>\r
2334                                   <scientific_name>Hypsibius dujardini</scientific_name>\r
2335                                   <common_name>Water bear</common_name>\r
2336                                   <synonym>Macrobiotus dujardini</synonym>\r
2337                                   <rank>species</rank>\r
2338                                   <uri>http://content62.eol.org/content/2013/08/23/23/61018_580_360.jpg</uri>\r
2339                                 </taxonomy>\r
2340                               </clade>\r
2341                             </clade>\r
2342                             <clade>\r
2343                               <taxonomy>\r
2344                                 <id provider="uniprot">6231</id>\r
2345                                 <scientific_name>Nematoda</scientific_name>\r
2346                                 <common_name>roundworms</common_name>\r
2347                                 <rank>phylum</rank>\r
2348                               </taxonomy>\r
2349                               <clade>\r
2350                                 <taxonomy>\r
2351                                   <id provider="uniprot">119089</id>\r
2352                                   <scientific_name>Chromadorea</scientific_name>\r
2353                                   <rank>class</rank>\r
2354                                 </taxonomy>\r
2355                                 <reference doi="10.1038/32160">\r
2356                                 </reference>\r
2357                                 <clade>\r
2358                                   <name>nematode Clade V</name>\r
2359                                   <clade>\r
2360                                     <taxonomy>\r
2361                                       <id provider="uniprot">6237</id>\r
2362                                       <scientific_name>Caenorhabditis</scientific_name>\r
2363                                       <rank>genus</rank>\r
2364                                     </taxonomy>\r
2365                                     <reference doi="10.1073/pnas.0403094101">\r
2366                                       <desc>Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss</desc>\r
2367                                     </reference>\r
2368                                     <clade>\r
2369                                       <name>CAEBR &amp; CAERE &amp; CAEBE &amp; CAEEL</name>\r
2370                                       <clade>\r
2371                                         <name>CAEBR &amp; CAERE &amp; CAEBE</name>\r
2372                                         <clade>\r
2373                                           <name>CAEBR &amp; CAERE</name>\r
2374                                           <clade>\r
2375                                             <taxonomy>\r
2376                                               <id provider="uniprot">6238</id>\r
2377                                               <code>CAEBR</code>\r
2378                                               <scientific_name>Caenorhabditis briggsae</scientific_name>\r
2379                                               <rank>species</rank>\r
2380                                               <uri>http://www.life.umd.edu/biology/haag/briggsae_herm.jpg</uri>\r
2381                                             </taxonomy>\r
2382                                           </clade>\r
2383                                           <clade>\r
2384                                             <taxonomy>\r
2385                                               <id provider="uniprot">31234</id>\r
2386                                               <code>CAERE</code>\r
2387                                               <scientific_name>Caenorhabditis remanei</scientific_name>\r
2388                                               <synonym>Caenorhabditis vulgaris</synonym>\r
2389                                               <rank>species</rank>\r
2390                                               <uri>http://lemur.amu.edu.pl/share/php/mirnest_1.0/species_images/Caenorhabditis_remanei.jpg</uri>\r
2391                                             </taxonomy>\r
2392                                           </clade>\r
2393                                         </clade>\r
2394                                         <clade>\r
2395                                           <taxonomy>\r
2396                                             <id provider="uniprot">135651</id>\r
2397                                             <code>CAEBE</code>\r
2398                                             <scientific_name>Caenorhabditis brenneri</scientific_name>\r
2399                                             <common_name>Nematode worm</common_name>\r
2400                                             <synonym>Caenorhabditis CB5161</synonym>\r
2401                                             <rank>species</rank>\r
2402                                           </taxonomy>\r
2403                                         </clade>\r
2404                                       </clade>\r
2405                                       <clade>\r
2406                                         <taxonomy>\r
2407                                           <id provider="uniprot">6239</id>\r
2408                                           <code>CAEEL</code>\r
2409                                           <scientific_name>Caenorhabditis elegans</scientific_name>\r
2410                                           <rank>species</rank>\r
2411                                           <uri>http://www.easternct.edu/~adams/images/celegansmain.jpg</uri>\r
2412                                         </taxonomy>\r
2413                                       </clade>\r
2414                                     </clade>\r
2415                                     <clade>\r
2416                                       <taxonomy>\r
2417                                         <id provider="uniprot">281687</id>\r
2418                                         <code>CAEJA</code>\r
2419                                         <scientific_name>Caenorhabditis japonica</scientific_name>\r
2420                                         <rank>species</rank>\r
2421                                       </taxonomy>\r
2422                                     </clade>\r
2423                                   </clade>\r
2424                                   <clade>\r
2425                                     <taxonomy>\r
2426                                       <id provider="uniprot">54126</id>\r
2427                                       <code>PRIPA</code>\r
2428                                       <scientific_name>Pristionchus pacificus</scientific_name>\r
2429                                       <common_name>Parasitic nematode</common_name>\r
2430                                       <rank>species</rank>\r
2431                                       <uri>http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg</uri>\r
2432                                     </taxonomy>\r
2433                                   </clade>\r
2434                                 </clade>\r
2435                                 <clade>\r
2436                                   <taxonomy>\r
2437                                     <id provider="uniprot">6296</id>\r
2438                                     <scientific_name>Onchocercidae</scientific_name>\r
2439                                     <rank>family</rank>\r
2440                                   </taxonomy>\r
2441                                   <clade>\r
2442                                     <taxonomy>\r
2443                                       <id provider="uniprot">6279</id>\r
2444                                       <code>BRUMA</code>\r
2445                                       <scientific_name>Brugia malayi</scientific_name>\r
2446                                       <common_name>Filarial nematode worm</common_name>\r
2447                                       <rank>species</rank>\r
2448                                       <uri>http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG</uri>\r
2449                                     </taxonomy>\r
2450                                   </clade>\r
2451                                   <clade>\r
2452                                     <taxonomy>\r
2453                                       <id provider="uniprot">6293</id>\r
2454                                       <code>WUCBA</code>\r
2455                                       <scientific_name>Wuchereria bancrofti</scientific_name>\r
2456                                       <rank>species</rank>\r
2457                                       <uri>http://upload.wikimedia.org/wikipedia/commons/a/a9/Wuchereria_bancrofti_1_DPDX.JPG</uri>\r
2458                                     </taxonomy>\r
2459                                   </clade>\r
2460                                 </clade>\r
2461                               </clade>\r
2462                               <clade>\r
2463                                 <taxonomy>\r
2464                                   <id provider="uniprot">6334</id>\r
2465                                   <code>TRISP</code>\r
2466                                   <scientific_name>Trichinella spiralis</scientific_name>\r
2467                                   <common_name>Trichina worm</common_name>\r
2468                                   <rank>species</rank>\r
2469                                   <uri>http://upload.wikimedia.org/wikipedia/commons/e/e8/Trichinella_larv1_DPDx.JPG</uri>\r
2470                                 </taxonomy>\r
2471                               </clade>\r
2472                             </clade>\r
2473                           </clade>\r
2474                           <clade>\r
2475                             <taxonomy>\r
2476                               <id provider="uniprot">1206795</id>\r
2477                               <scientific_name>Lophotrochozoa</scientific_name>\r
2478                             </taxonomy>\r
2479                             <clade>\r
2480                               <name>Annelida &amp; Mollusca</name>\r
2481                               <clade>\r
2482                                 <taxonomy>\r
2483                                   <id provider="uniprot">6447</id>\r
2484                                   <scientific_name>Mollusca</scientific_name>\r
2485                                   <rank>phylum</rank>\r
2486                                 </taxonomy>\r
2487                                 <clade>\r
2488                                   <taxonomy>\r
2489                                     <id provider="uniprot">6448</id>\r
2490                                     <scientific_name>Gastropoda</scientific_name>\r
2491                                     <rank>class</rank>\r
2492                                   </taxonomy>\r
2493                                   <clade>\r
2494                                     <taxonomy>\r
2495                                       <id provider="uniprot">6500</id>\r
2496                                       <code>APLCA</code>\r
2497                                       <scientific_name>Aplysia californica</scientific_name>\r
2498                                       <common_name>California sea hare</common_name>\r
2499                                       <rank>species</rank>\r
2500                                       <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>\r
2501                                     </taxonomy>\r
2502                                   </clade>\r
2503                                   <clade>\r
2504                                     <taxonomy>\r
2505                                       <id provider="uniprot">225164</id>\r
2506                                       <code>LOTGI</code>\r
2507                                       <scientific_name>Lottia gigantea</scientific_name>\r
2508                                       <common_name>Owl limpet</common_name>\r
2509                                       <rank>species</rank>\r
2510                                       <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>\r
2511                                     </taxonomy>\r
2512                                   </clade>\r
2513                                 </clade>\r
2514                                 <clade>\r
2515                                   <taxonomy>\r
2516                                     <id provider="uniprot">6545</id>\r
2517                                     <scientific_name>Pteriomorphia</scientific_name>\r
2518                                     <synonym>Pteriomorpha</synonym>\r
2519                                     <rank>subclass</rank>\r
2520                                   </taxonomy>\r
2521                                   <clade>\r
2522                                     <taxonomy>\r
2523                                       <id provider="uniprot">29159</id>\r
2524                                       <code>CRAGI</code>\r
2525                                       <scientific_name>Crassostrea gigas</scientific_name>\r
2526                                       <authority>Thunberg, 1793</authority>\r
2527                                       <common_name>Pacific oyster</common_name>\r
2528                                       <synonym>Crassotrea gigas</synonym>\r
2529                                       <synonym>Crassostrea angulata</synonym>\r
2530                                       <synonym>Ostrea gigas</synonym>\r
2531                                       <rank>species</rank>\r
2532                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>\r
2533                                     </taxonomy>\r
2534                                   </clade>\r
2535                                   <clade>\r
2536                                     <taxonomy>\r
2537                                       <id provider="uniprot">50426</id>\r
2538                                       <code>PINFU</code>\r
2539                                       <scientific_name>Pinctada fucata</scientific_name>\r
2540                                       <common_name>Pearl oyster</common_name>\r
2541                                       <rank>species</rank>\r
2542                                       <uri>http://www.elrincondelmalacologo.com/Web%20fotos%20marinos%20no%20gasteropodos/Fotos%20coleccion/Pteriidae/Pinctada%20fucata.jpg</uri>\r
2543                                     </taxonomy>\r
2544                                   </clade>\r
2545                                 </clade>\r
2546                               </clade>\r
2547                               <clade>\r
2548                                 <taxonomy>\r
2549                                   <id provider="uniprot">6340</id>\r
2550                                   <scientific_name>Annelida</scientific_name>\r
2551                                   <rank>phylum</rank>\r
2552                                 </taxonomy>\r
2553                                 <clade>\r
2554                                   <taxonomy>\r
2555                                     <id provider="uniprot">283909</id>\r
2556                                     <code>CAPTE</code>\r
2557                                     <scientific_name>Capitella teleta</scientific_name>\r
2558                                     <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>\r
2559                                     <common_name>Polychaete worm</common_name>\r
2560                                     <synonym>Capitella sp. I</synonym>\r
2561                                     <rank>species</rank>\r
2562                                     <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>\r
2563                                   </taxonomy>\r
2564                                 </clade>\r
2565                                 <clade>\r
2566                                   <taxonomy>\r
2567                                     <id provider="uniprot">6412</id>\r
2568                                     <code>HELRO</code>\r
2569                                     <scientific_name>Helobdella robusta</scientific_name>\r
2570                                     <common_name>Californian leech</common_name>\r
2571                                     <rank>species</rank>\r
2572                                     <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>\r
2573                                   </taxonomy>\r
2574                                 </clade>\r
2575                               </clade>\r
2576                             </clade>\r
2577                             <clade>\r
2578                               <taxonomy>\r
2579                                 <id provider="uniprot">6157</id>\r
2580                                 <scientific_name>Platyhelminthes</scientific_name>\r
2581                                 <rank>phylum</rank>\r
2582                               </taxonomy>\r
2583                               <clade>\r
2584                                 <taxonomy>\r
2585                                   <scientific_name>Neodermata</scientific_name>\r
2586                                 </taxonomy>\r
2587                                 <clade>\r
2588                                   <taxonomy>\r
2589                                     <id provider="uniprot">6179</id>\r
2590                                     <scientific_name>Digenea</scientific_name>\r
2591                                     <common_name>flukes</common_name>\r
2592                                     <rank>subclass</rank>\r
2593                                   </taxonomy>\r
2594                                   <clade>\r
2595                                     <taxonomy>\r
2596                                       <id provider="uniprot">6183</id>\r
2597                                       <code>SCHMA</code>\r
2598                                       <scientific_name>Schistosoma mansoni</scientific_name>\r
2599                                       <common_name>Blood fluke</common_name>\r
2600                                       <rank>species</rank>\r
2601                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg</uri>\r
2602                                     </taxonomy>\r
2603                                   </clade>\r
2604                                   <clade>\r
2605                                     <taxonomy>\r
2606                                       <id provider="uniprot">79923</id>\r
2607                                       <code>CLOSI</code>\r
2608                                       <scientific_name>Clonorchis sinensi</scientific_name>\r
2609                                       <authority>Cobbold, 1875</authority>\r
2610                                       <common_name>Chinese liver fluke</common_name>\r
2611                                       <rank>species</rank>\r
2612                                       <uri>http://people.bethel.edu/~kisrob/VirtualBiology/Planaria/Chlonorchis_sinensis.jpg</uri>\r
2613                                     </taxonomy>\r
2614                                   </clade>\r
2615                                 </clade>\r
2616                                 <clade>\r
2617                                   <taxonomy>\r
2618                                     <id provider="uniprot">6201</id>\r
2619                                     <scientific_name>Cyclophyllidea</scientific_name>\r
2620                                     <rank>order</rank>\r
2621                                   </taxonomy>\r
2622                                   <clade>\r
2623                                     <taxonomy>\r
2624                                       <id provider="uniprot">6211</id>\r
2625                                       <code>ECHMU</code>\r
2626                                       <scientific_name>Echinococcus multilocularis</scientific_name>\r
2627                                       <common_name>Fox tapeworm</common_name>\r
2628                                       <rank>species</rank>\r
2629                                       <uri>http://www.stanford.edu/group/parasites/ParaSites2003/Echinococcus/images/Echino_generalinfo.jpg</uri>\r
2630                                     </taxonomy>\r
2631                                   </clade>\r
2632                                   <clade>\r
2633                                     <taxonomy>\r
2634                                       <id provider="uniprot">85433</id>\r
2635                                       <code>HYMMI</code>\r
2636                                       <scientific_name>Hymenolepis microstoma</scientific_name>\r
2637                                       <common_name>Rodent tapeworm</common_name>\r
2638                                       <synonym>Rodentolepis microstoma</synonym>\r
2639                                       <rank>species</rank>\r
2640                                     </taxonomy>\r
2641                                   </clade>\r
2642                                 </clade>\r
2643                               </clade>\r
2644                               <clade>\r
2645                                 <taxonomy>\r
2646                                   <id provider="uniprot">79327</id>\r
2647                                   <code>SCHMD</code>\r
2648                                   <scientific_name>Schmidtea mediterranea</scientific_name>\r
2649                                   <common_name>Freshwater planarian flatworm</common_name>\r
2650                                   <rank>species</rank>\r
2651                                   <uri>http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg</uri>\r
2652                                 </taxonomy>\r
2653                               </clade>\r
2654                             </clade>\r
2655                           </clade>\r
2656                         </clade>\r
2657                       </clade>\r
2658                       <clade>\r
2659                         <name>Cnidaria</name>\r
2660                         <taxonomy>\r
2661                           <id provider="uniprot">6073</id>\r
2662                           <scientific_name>Cnidaria</scientific_name>\r
2663                           <rank>phylum</rank>\r
2664                         </taxonomy>\r
2665                         <clade>\r
2666                           <taxonomy>\r
2667                             <id provider="uniprot">6102</id>\r
2668                             <scientific_name>Hexacorallia</scientific_name>\r
2669                             <synonym>Ceriantipatharia</synonym>\r
2670                             <synonym>Zoantharia</synonym>\r
2671                             <rank>subclass</rank>\r
2672                           </taxonomy>\r
2673                           <clade>\r
2674                             <taxonomy>\r
2675                               <id provider="uniprot">70779</id>\r
2676                               <code>ACRDI</code>\r
2677                               <scientific_name>Acropora digitifera</scientific_name>\r
2678                               <common_name>Staghorn coral</common_name>\r
2679                               <rank>species</rank>\r
2680                               <uri>http://mygenomix.files.wordpress.com/2011/07/sn-coral.jpg</uri>\r
2681                             </taxonomy>\r
2682                           </clade>\r
2683                           <clade>\r
2684                             <taxonomy>\r
2685                               <id provider="uniprot">45351</id>\r
2686                               <code>NEMVE</code>\r
2687                               <scientific_name>Nematostella vectensis</scientific_name>\r
2688                               <common_name>Starlet sea anemone</common_name>\r
2689                               <rank>species</rank>\r
2690                               <uri>http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg</uri>\r
2691                             </taxonomy>\r
2692                           </clade>\r
2693                         </clade>\r
2694                         <clade>\r
2695                           <taxonomy>\r
2696                             <id provider="uniprot">6087</id>\r
2697                             <code>HYDVU</code>\r
2698                             <scientific_name>Hydra vulgaris</scientific_name>\r
2699                             <authority>Pallas, 1766</authority>\r
2700                             <common_name>Hydra</common_name>\r
2701                             <synonym>Hydra attenuata</synonym>\r
2702                             <synonym>Hydra magnipapillata</synonym>\r
2703                             <rank>species</rank>\r
2704                             <uri>http://www.nig.ac.jp/labs/OntoGen/A10.jpg</uri>\r
2705                             <uri>http://upload.wikimedia.org/wikipedia/commons/1/15/Hydra_biology.jpg</uri>\r
2706                           </taxonomy>\r
2707                         </clade>\r
2708                       </clade>\r
2709                     </clade>\r
2710                     <clade>\r
2711                       <taxonomy>\r
2712                         <id provider="uniprot">10228</id>\r
2713                         <code>TRIAD</code>\r
2714                         <scientific_name>Trichoplax adhaerens</scientific_name>\r
2715                         <synonym>Trichoplax reptans</synonym>\r
2716                         <rank>species</rank>\r
2717                         <uri>http://genome.jgi-psf.org/Triad1/placozoan_signorovitch.jpg</uri>\r
2718                       </taxonomy>\r
2719                       <reference doi="10.1073/pnas.0602076103">\r
2720                       </reference>\r
2721                     </clade>\r
2722                   </clade>\r
2723                   <clade>\r
2724                     <taxonomy>\r
2725                       <id provider="uniprot">27923</id>\r
2726                       <code>MNELE</code>\r
2727                       <scientific_name>Mnemiopsis leidyi</scientific_name>\r
2728                       <authority>A. gassiz, 1865</authority>\r
2729                       <common_name>Sea walnut</common_name>\r
2730                       <synonym>Warty comb jellyfish</synonym>\r
2731                       <rank>species</rank>\r
2732                       <uri>http://images.marinespecies.org/resized/12797_mnemiopsis-leidyi.jpg</uri>\r
2733                       <uri>http://i.livescience.com/images/i/000/014/544/original/mnemiopsis-leidyi-jellyfish-101014-02.jpg</uri>\r
2734                     </taxonomy>\r
2735                   </clade>\r
2736                   <clade>\r
2737                     <taxonomy>\r
2738                       <id provider="uniprot">400682</id>\r
2739                       <code>AMPQE</code>\r
2740                       <scientific_name>Amphimedon queenslandica</scientific_name>\r
2741                       <authority>Hooper &amp; Van Soest, 2006</authority>\r
2742                       <common_name>Sponge</common_name>\r
2743                       <synonym>Reniera sp. JGI-2005</synonym>\r
2744                       <rank>species</rank>\r
2745                       <uri>http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg</uri>\r
2746                     </taxonomy>\r
2747                   </clade>\r
2748                 </clade>\r
2749                 <clade>\r
2750                   <taxonomy>\r
2751                     <id provider="uniprot">81524</id>\r
2752                     <scientific_name>Codonosigidae</scientific_name>\r
2753                     <rank>family</rank>\r
2754                   </taxonomy>\r
2755                   <clade>\r
2756                     <taxonomy>\r
2757                       <id provider="uniprot">81824</id>\r
2758                       <code>MONBE</code>\r
2759                       <scientific_name>Monosiga brevicollis</scientific_name>\r
2760                       <common_name>Choanoflagellate</common_name>\r
2761                       <rank>species</rank>\r
2762                       <uri>http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg</uri>\r
2763                     </taxonomy>\r
2764                   </clade>\r
2765                   <clade>\r
2766                     <taxonomy>\r
2767                       <id provider="uniprot">946362</id>\r
2768                       <code>SALS5</code>\r
2769                       <scientific_name>Salpingoeca rosetta</scientific_name>\r
2770                       <synonym>Proterospongia sp. ATCC 50818</synonym>\r
2771                       <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
2772                       <synonym>Proterospongia sp. (strain ATCC 50818 / BSB-021)</synonym>\r
2773                       <rank>species</rank>\r
2774                       <uri>http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg</uri>\r
2775                     </taxonomy>\r
2776                   </clade>\r
2777                 </clade>\r
2778               </clade>\r
2779               <clade>\r
2780                 <name>Ichthyophonida &amp; Filasterea</name>\r
2781                 <clade>\r
2782                   <taxonomy>\r
2783                     <id provider="uniprot">198625</id>\r
2784                     <scientific_name>Ichthyophonida</scientific_name>\r
2785                     <rank>order</rank>\r
2786                   </taxonomy>\r
2787                   <clade>\r
2788                     <taxonomy>\r
2789                       <id provider="uniprot">4881</id>\r
2790                       <code>AMOPA</code>\r
2791                       <scientific_name>Amoebidium parasiticum</scientific_name>\r
2792                       <rank>species</rank>\r
2793                       <uri>http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg</uri>\r
2794                     </taxonomy>\r
2795                   </clade>\r
2796                   <clade>\r
2797                     <taxonomy>\r
2798                       <id provider="uniprot">72019</id>\r
2799                       <code>SARXX</code>\r
2800                       <scientific_name>Sphaeroforma arctica</scientific_name>\r
2801                       <rank>species</rank>\r
2802                       <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
2803                     </taxonomy>\r
2804                   </clade>\r
2805                 </clade>\r
2806                 <clade>\r
2807                   <taxonomy>\r
2808                     <scientific_name>Filasterea</scientific_name>\r
2809                   </taxonomy>\r
2810                   <reference doi="10.1371/journal.pone.0002098">\r
2811                   </reference>\r
2812                   <reference>\r
2813                   </reference>\r
2814                   <clade>\r
2815                     <taxonomy>\r
2816                       <id provider="uniprot">595528</id>\r
2817                       <code>CAPO3</code>\r
2818                       <scientific_name>Capsaspora owczarzaki (strain ATCC 30864)</scientific_name>\r
2819                       <uri>http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg</uri>\r
2820                     </taxonomy>\r
2821                   </clade>\r
2822                   <clade>\r
2823                     <taxonomy>\r
2824                       <id provider="uniprot">134558</id>\r
2825                       <scientific_name>Ministeria vibrans</scientific_name>\r
2826                       <rank>species</rank>\r
2827                       <uri>http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg</uri>\r
2828                     </taxonomy>\r
2829                   </clade>\r
2830                 </clade>\r
2831               </clade>\r
2832             </clade>\r
2833             <clade>\r
2834               <taxonomy>\r
2835                 <scientific_name>Holomycota</scientific_name>\r
2836                 <synonym>Nucletmycea</synonym>\r
2837               </taxonomy>\r
2838               <reference doi="10.1186/1471-2148-9-272">\r
2839                 <desc>Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support</desc>\r
2840               </reference>\r
2841               <clade>\r
2842                 <taxonomy>\r
2843                   <id provider="uniprot">4751</id>\r
2844                   <scientific_name>Fungi</scientific_name>\r
2845                   <rank>kingdom</rank>\r
2846                 </taxonomy>\r
2847                 <reference doi="10.1186/1741-7007-10-47">\r
2848                   <desc>Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi</desc>\r
2849                 </reference>\r
2850                 <clade>\r
2851                   <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
2852                   <clade>\r
2853                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
2854                     <clade>\r
2855                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
2856                       <clade>\r
2857                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
2858                         <clade>\r
2859                           <name>Dikarya &amp; Mucoromycotina</name>\r
2860                           <clade>\r
2861                             <name>Glomeromycota + Dikarya</name>\r
2862                             <clade>\r
2863                               <taxonomy>\r
2864                                 <id provider="uniprot">451864</id>\r
2865                                 <scientific_name>Dikarya</scientific_name>\r
2866                                 <rank>subkingdom</rank>\r
2867                               </taxonomy>\r
2868                               <reference doi="10.1038/nature05110">\r
2869                               </reference>\r
2870                               <reference>\r
2871                               </reference>\r
2872                               <clade>\r
2873                                 <taxonomy>\r
2874                                   <id provider="uniprot">4890</id>\r
2875                                   <scientific_name>Ascomycota</scientific_name>\r
2876                                   <rank>phylum</rank>\r
2877                                 </taxonomy>\r
2878                                 <clade>\r
2879                                   <name>Pezizomycotina &amp; Saccharomycetales</name>\r
2880                                   <clade>\r
2881                                     <taxonomy>\r
2882                                       <id provider="uniprot">147538</id>\r
2883                                       <scientific_name>Pezizomycotina</scientific_name>\r
2884                                       <synonym>Euascomycota</synonym>\r
2885                                       <rank>subphylum</rank>\r
2886                                     </taxonomy>\r
2887                                     <reference doi="0.3852/mycologia.98.6.1018">\r
2888                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
2889                                     </reference>\r
2890                                     <reference>\r
2891                                     </reference>\r
2892                                     <clade>\r
2893                                       <taxonomy>\r
2894                                         <id provider="uniprot">716546</id>\r
2895                                         <scientific_name>Leotiomyceta</scientific_name>\r
2896                                       </taxonomy>\r
2897                                       <clade>\r
2898                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
2899                                         <clade>\r
2900                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
2901                                           <clade>\r
2902                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
2903                                             <clade>\r
2904                                               <taxonomy>\r
2905                                                 <id provider="uniprot">715989</id>\r
2906                                                 <scientific_name>Sordariomyceta</scientific_name>\r
2907                                               </taxonomy>\r
2908                                               <clade>\r
2909                                                 <taxonomy>\r
2910                                                   <id provider="uniprot">147550</id>\r
2911                                                   <scientific_name>Sordariomycetes</scientific_name>\r
2912                                                   <rank>class</rank>\r
2913                                                 </taxonomy>\r
2914                                                 <clade>\r
2915                                                   <name>Magnaporthales &amp; Hypocreales</name>\r
2916                                                   <clade>\r
2917                                                     <taxonomy>\r
2918                                                       <id provider="uniprot">5125</id>\r
2919                                                       <scientific_name>Hypocreales</scientific_name>\r
2920                                                       <rank>order</rank>\r
2921                                                     </taxonomy>\r
2922                                                     <clade>\r
2923                                                       <taxonomy>\r
2924                                                         <id provider="uniprot">398408</id>\r
2925                                                         <code>AALXX</code>\r
2926                                                         <scientific_name>Acremonium alcalophilum</scientific_name>\r
2927                                                         <rank>species</rank>\r
2928                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
2929                                                       </taxonomy>\r
2930                                                     </clade>\r
2931                                                     <clade>\r
2932                                                       <taxonomy>\r
2933                                                         <id provider="uniprot">229533</id>\r
2934                                                         <code>GIBZE</code>\r
2935                                                         <scientific_name>Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)</scientific_name>\r
2936                                                         <common_name>Wheat head blight fungus</common_name>\r
2937                                                         <synonym>Fusarium graminearum</synonym>\r
2938                                                         <synonym>Gibberella zeae PH-1</synonym>\r
2939                                                         <rank>strain</rank>\r
2940                                                         <uri>http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg</uri>\r
2941                                                       </taxonomy>\r
2942                                                     </clade>\r
2943                                                     <clade>\r
2944                                                       <taxonomy>\r
2945                                                         <id provider="uniprot">413071</id>\r
2946                                                         <code>HYPVG</code>\r
2947                                                         <scientific_name>Hypocrea virens (strain Gv29-8 / FGSC 10586)</scientific_name>\r
2948                                                         <common_name>Gliocladium virens</common_name>\r
2949                                                         <synonym>Trichoderma virens</synonym>\r
2950                                                         <synonym>Gliocladium flavofuscum</synonym>\r
2951                                                         <synonym>Trichoderma virens Gv29-8</synonym>\r
2952                                                         <synonym>Gliocladium virens</synonym>\r
2953                                                         <rank>strain</rank>\r
2954                                                         <uri>http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg</uri>\r
2955                                                       </taxonomy>\r
2956                                                     </clade>\r
2957                                                   </clade>\r
2958                                                   <clade>\r
2959                                                     <taxonomy>\r
2960                                                       <id provider="uniprot">148305</id>\r
2961                                                       <code>MAGGR</code>\r
2962                                                       <scientific_name>Magnaporthe grisea</scientific_name>\r
2963                                                       <common_name>Rice blast fungus</common_name>\r
2964                                                       <synonym>Pyricularia grisea</synonym>\r
2965                                                       <rank>species</rank>\r
2966                                                       <uri>http://www.forestryimages.org/images/768x512/5369002.jpg</uri>\r
2967                                                     </taxonomy>\r
2968                                                   </clade>\r
2969                                                 </clade>\r
2970                                                 <clade>\r
2971                                                   <taxonomy>\r
2972                                                     <id provider="uniprot">5139</id>\r
2973                                                     <scientific_name>Sordariales</scientific_name>\r
2974                                                     <rank>order</rank>\r
2975                                                   </taxonomy>\r
2976                                                   <clade>\r
2977                                                     <taxonomy>\r
2978                                                       <id provider="uniprot">35718</id>\r
2979                                                       <scientific_name>Chaetomiaceae</scientific_name>\r
2980                                                       <rank>family</rank>\r
2981                                                     </taxonomy>\r
2982                                                     <clade>\r
2983                                                       <taxonomy>\r
2984                                                         <id provider="uniprot">35719</id>\r
2985                                                         <scientific_name>Thielavia</scientific_name>\r
2986                                                         <rank>genus</rank>\r
2987                                                       </taxonomy>\r
2988                                                       <clade>\r
2989                                                         <taxonomy>\r
2990                                                           <id provider="uniprot">573729</id>\r
2991                                                           <code>THIHA</code>\r
2992                                                           <scientific_name>Thielavia heterothallica (strain ATCC 42464 / BCRC 31852 / DSM 1799)</scientific_name>\r
2993                                                           <authority>(Apinis) Oorschot 1977</authority>\r
2994                                                           <synonym>Sporotrichum thermophilum</synonym>\r
2995                                                           <synonym>Myceliophthora thermophila</synonym>\r
2996                                                           <rank>species</rank>\r
2997                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
2998                                                         </taxonomy>\r
2999                                                       </clade>\r
3000                                                       <clade>\r
3001                                                         <taxonomy>\r
3002                                                           <id provider="uniprot">578455</id>\r
3003                                                           <code>THITE</code>\r
3004                                                           <scientific_name>Thielavia terrestris (strain ATCC 38088 / NRRL 8126)</scientific_name>\r
3005                                                           <synonym>Acremonium alabamense</synonym>\r
3006                                                           <synonym>Thielavia terrestris NRRL 8126</synonym>\r
3007                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
3008                                                         </taxonomy>\r
3009                                                       </clade>\r
3010                                                     </clade>\r
3011                                                     <clade>\r
3012                                                       <taxonomy>\r
3013                                                         <id provider="uniprot">306901</id>\r
3014                                                         <code>CHAGB</code>\r
3015                                                         <scientific_name>Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)</scientific_name>\r
3016                                                         <authority>Kunze 1817</authority>\r
3017                                                         <common_name>Soil fungus</common_name>\r
3018                                                         <rank>strain</rank>\r
3019                                                       </taxonomy>\r
3020                                                     </clade>\r
3021                                                   </clade>\r
3022                                                   <clade>\r
3023                                                     <taxonomy>\r
3024                                                       <id provider="uniprot">367110</id>\r
3025                                                       <code>NEUCR</code>\r
3026                                                       <scientific_name>Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)</scientific_name>\r
3027                                                       <rank>strain</rank>\r
3028                                                     </taxonomy>\r
3029                                                   </clade>\r
3030                                                 </clade>\r
3031                                               </clade>\r
3032                                               <clade>\r
3033                                                 <taxonomy>\r
3034                                                   <id provider="uniprot">147548</id>\r
3035                                                   <scientific_name>Leotiomycetes</scientific_name>\r
3036                                                   <rank>class</rank>\r
3037                                                 </taxonomy>\r
3038                                                 <clade>\r
3039                                                   <taxonomy>\r
3040                                                     <id provider="uniprot">28983</id>\r
3041                                                     <scientific_name>Sclerotiniaceae</scientific_name>\r
3042                                                     <rank>family</rank>\r
3043                                                   </taxonomy>\r
3044                                                   <clade>\r
3045                                                     <taxonomy>\r
3046                                                       <id provider="uniprot">999810</id>\r
3047                                                       <code>BOTF4</code>\r
3048                                                       <scientific_name>Botryotinia fuckeliana (strain T4)</scientific_name>\r
3049                                                       <common_name>Noble rot fungus</common_name>\r
3050                                                       <synonym>Botrytis cinerea</synonym>\r
3051                                                       <rank>strain</rank>\r
3052                                                     </taxonomy>\r
3053                                                   </clade>\r
3054                                                   <clade>\r
3055                                                     <taxonomy>\r
3056                                                       <id provider="uniprot">665079</id>\r
3057                                                       <code>SCLS1</code>\r
3058                                                       <scientific_name>Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1)</scientific_name>\r
3059                                                       <common_name>White mold</common_name>\r
3060                                                       <synonym>Whetzelinia sclerotiorum</synonym>\r
3061                                                       <rank>strain</rank>\r
3062                                                     </taxonomy>\r
3063                                                   </clade>\r
3064                                                 </clade>\r
3065                                                 <clade>\r
3066                                                   <taxonomy>\r
3067                                                     <id provider="uniprot">78148</id>\r
3068                                                     <scientific_name>Oidiodendron maius</scientific_name>\r
3069                                                     <rank>species</rank>\r
3070                                                   </taxonomy>\r
3071                                                 </clade>\r
3072                                               </clade>\r
3073                                             </clade>\r
3074                                             <clade>\r
3075                                               <taxonomy>\r
3076                                                 <id provider="uniprot">388435</id>\r
3077                                                 <scientific_name>Lecanoromycetidae</scientific_name>\r
3078                                                 <rank>subclass</rank>\r
3079                                               </taxonomy>\r
3080                                               <clade>\r
3081                                                 <taxonomy>\r
3082                                                   <id provider="uniprot">27339</id>\r
3083                                                   <scientific_name>Cladonia grayi</scientific_name>\r
3084                                                   <synonym>Cladonia grayi Merr</synonym>\r
3085                                                   <rank>species</rank>\r
3086                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
3087                                                 </taxonomy>\r
3088                                               </clade>\r
3089                                               <clade>\r
3090                                                 <taxonomy>\r
3091                                                   <id provider="uniprot">107463</id>\r
3092                                                   <scientific_name>Xanthoria parietina</scientific_name>\r
3093                                                   <rank>species</rank>\r
3094                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
3095                                                 </taxonomy>\r
3096                                               </clade>\r
3097                                             </clade>\r
3098                                           </clade>\r
3099                                           <clade>\r
3100                                             <taxonomy>\r
3101                                               <id provider="uniprot">147541</id>\r
3102                                               <scientific_name>Dothideomycetes</scientific_name>\r
3103                                               <common_name>bitunicate ascomycetes</common_name>\r
3104                                               <rank>class</rank>\r
3105                                             </taxonomy>\r
3106                                             <reference doi="10.3114/sim.2009.64.01">\r
3107                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
3108                                             </reference>\r
3109                                             <clade>\r
3110                                               <taxonomy>\r
3111                                                 <id provider="uniprot">451867</id>\r
3112                                                 <scientific_name>Dothideomycetidae</scientific_name>\r
3113                                                 <rank>subclass</rank>\r
3114                                               </taxonomy>\r
3115                                               <reference doi="10.3852/mycologia.98.6.1041">\r
3116                                                 <desc>A multigene phylogeny of the Dothideomycetes using four nuclear loci</desc>\r
3117                                               </reference>\r
3118                                               <reference>\r
3119                                               </reference>\r
3120                                               <reference>\r
3121                                               </reference>\r
3122                                               <clade>\r
3123                                                 <taxonomy>\r
3124                                                   <id provider="uniprot">134362</id>\r
3125                                                   <scientific_name>Capnodiales</scientific_name>\r
3126                                                   <rank>order</rank>\r
3127                                                 </taxonomy>\r
3128                                                 <clade>\r
3129                                                   <taxonomy>\r
3130                                                     <id provider="uniprot">41254</id>\r
3131                                                     <scientific_name>Mycosphaerella</scientific_name>\r
3132                                                     <rank>genus</rank>\r
3133                                                   </taxonomy>\r
3134                                                   <clade>\r
3135                                                     <taxonomy>\r
3136                                                       <id provider="uniprot">83344</id>\r
3137                                                       <code>PFIXX</code>\r
3138                                                       <scientific_name>Pseudocercospora fijiensis</scientific_name>\r
3139                                                       <synonym>Mycosphaerella fijiensis</synonym>\r
3140                                                       <rank>species</rank>\r
3141                                                     </taxonomy>\r
3142                                                   </clade>\r
3143                                                   <clade>\r
3144                                                     <taxonomy>\r
3145                                                       <id provider="uniprot">336722</id>\r
3146                                                       <code>MYCGM</code>\r
3147                                                       <scientific_name>Mycosphaerella graminicola (strain CBS 115943 / IPO323)</scientific_name>\r
3148                                                       <common_name>Speckled leaf blotch fungus</common_name>\r
3149                                                       <synonym>Zymoseptoria tritici IPO323</synonym>\r
3150                                                       <synonym>Mycosphaerella graminicola IPO323</synonym>\r
3151                                                       <synonym>Septoria tritici</synonym>\r
3152                                                       <rank>strain</rank>\r
3153                                                     </taxonomy>\r
3154                                                   </clade>\r
3155                                                   <clade>\r
3156                                                     <taxonomy>\r
3157                                                       <id provider="uniprot">64363</id>\r
3158                                                       <code>MYCPJ</code>\r
3159                                                       <scientific_name>Mycosphaerella pini</scientific_name>\r
3160                                                       <common_name>Red band needle blight disease fungus</common_name>\r
3161                                                       <synonym>Dothistroma septosporum</synonym>\r
3162                                                       <synonym>Dothistroma pini</synonym>\r
3163                                                       <rank>species</rank>\r
3164                                                     </taxonomy>\r
3165                                                   </clade>\r
3166                                                   <clade>\r
3167                                                     <taxonomy>\r
3168                                                       <id provider="uniprot">692275</id>\r
3169                                                       <code>SPHMS</code>\r
3170                                                       <scientific_name>Sphaerulina musiva (strain SO2202)</scientific_name>\r
3171                                                       <common_name>Poplar stem canker fungus</common_name>\r
3172                                                       <synonym>Septoria musiva</synonym>\r
3173                                                       <synonym>Mycosphaerella populorum SO2202</synonym>\r
3174                                                       <synonym>Septoria musiva SO2202</synonym>\r
3175                                                       <synonym>Sphaerulina musiva SO2202</synonym>\r
3176                                                       <rank>strain</rank>\r
3177                                                       <uri>http://genome.jgi-psf.org/public/Sepmu1/Septoria-musiva-colony-abundantly-sporulating-2.jpg</uri>\r
3178                                                     </taxonomy>\r
3179                                                   </clade>\r
3180                                                 </clade>\r
3181                                                 <clade>\r
3182                                                   <taxonomy>\r
3183                                                     <id provider="uniprot">430998</id>\r
3184                                                     <code>BCOXX</code>\r
3185                                                     <scientific_name>Baudoinia compniacensis</scientific_name>\r
3186                                                     <common_name>Angels&apos; Share fungus</common_name>\r
3187                                                     <synonym>Torula compniacensis</synonym>\r
3188                                                     <rank>species</rank>\r
3189                                                     <uri>http://www.botanicalgarden.ubc.ca/potd/images/2011/baudoinia-compniacensis2.jpg</uri>\r
3190                                                   </taxonomy>\r
3191                                                 </clade>\r
3192                                               </clade>\r
3193                                               <clade>\r
3194                                                 <taxonomy>\r
3195                                                   <id provider="uniprot">5580</id>\r
3196                                                   <code>AURPU</code>\r
3197                                                   <scientific_name>Aureobasidium pullulans</scientific_name>\r
3198                                                   <common_name>Black yeast</common_name>\r
3199                                                   <synonym>Pullularia pullulans</synonym>\r
3200                                                   <rank>species</rank>\r
3201                                                 </taxonomy>\r
3202                                                 <clade>\r
3203                                                   <taxonomy>\r
3204                                                     <id provider="uniprot">178873</id>\r
3205                                                     <code>APPXX</code>\r
3206                                                     <scientific_name>Aureobasidium pullulans var. pullulans</scientific_name>\r
3207                                                     <rank>varietas</rank>\r
3208                                                   </taxonomy>\r
3209                                                 </clade>\r
3210                                                 <clade>\r
3211                                                   <taxonomy>\r
3212                                                     <id provider="uniprot">46634</id>\r
3213                                                     <code>APMXX</code>\r
3214                                                     <scientific_name>Aureobasidium pullulans var. melanogenum</scientific_name>\r
3215                                                     <rank>varietas</rank>\r
3216                                                     <uri>http://genome.jgi-psf.org/public/Aurpu_var_mel1/Aurpu_var_mel1_P1010309ApM+(2).JPG</uri>\r
3217                                                   </taxonomy>\r
3218                                                 </clade>\r
3219                                                 <clade>\r
3220                                                   <taxonomy>\r
3221                                                     <id provider="uniprot">1042127</id>\r
3222                                                     <code>APSXX</code>\r
3223                                                     <scientific_name>Aureobasidium pullulans var. subglaciale</scientific_name>\r
3224                                                     <synonym>Aureobasidium pullulans var. nov. PZ-2008</synonym>\r
3225                                                     <rank>varietas</rank>\r
3226                                                   </taxonomy>\r
3227                                                 </clade>\r
3228                                               </clade>\r
3229                                             </clade>\r
3230                                             <clade>\r
3231                                               <taxonomy>\r
3232                                                 <id provider="uniprot">715340</id>\r
3233                                                 <scientific_name>Pleosporineae</scientific_name>\r
3234                                                 <rank>suborder</rank>\r
3235                                               </taxonomy>\r
3236                                               <clade>\r
3237                                                 <taxonomy>\r
3238                                                   <id provider="uniprot">28556</id>\r
3239                                                   <scientific_name>Pleosporaceae</scientific_name>\r
3240                                                   <rank>family</rank>\r
3241                                                 </taxonomy>\r
3242                                                 <clade>\r
3243                                                   <name>Cochliobolus &amp; Setosphaeria</name>\r
3244                                                   <clade>\r
3245                                                     <taxonomy>\r
3246                                                       <id provider="uniprot">45130</id>\r
3247                                                       <code>COCSA</code>\r
3248                                                       <scientific_name>Cochliobolus sativus</scientific_name>\r
3249                                                       <synonym>Bipolaris sorokiniana</synonym>\r
3250                                                       <rank>species</rank>\r
3251                                                       <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
3252                                                     </taxonomy>\r
3253                                                   </clade>\r
3254                                                   <clade>\r
3255                                                     <taxonomy>\r
3256                                                       <id provider="uniprot">93612</id>\r
3257                                                       <code>SETTU</code>\r
3258                                                       <scientific_name>Setosphaeria turcica</scientific_name>\r
3259                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
3260                                                       <common_name>Northern corn leaf blight disease fungus</common_name>\r
3261                                                       <synonym>Exserohilum turcicum</synonym>\r
3262                                                       <synonym>Helminthosporium turcicum</synonym>\r
3263                                                       <rank>species</rank>\r
3264                                                     </taxonomy>\r
3265                                                   </clade>\r
3266                                                 </clade>\r
3267                                                 <clade>\r
3268                                                   <taxonomy>\r
3269                                                     <id provider="uniprot">426418</id>\r
3270                                                     <code>PYRTR</code>\r
3271                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
3272                                                     <common_name>Wheat tan spot fungus</common_name>\r
3273                                                     <synonym>Drechslera tritici-repentis</synonym>\r
3274                                                     <rank>strain</rank>\r
3275                                                   </taxonomy>\r
3276                                                 </clade>\r
3277                                               </clade>\r
3278                                               <clade>\r
3279                                                 <taxonomy>\r
3280                                                   <id provider="uniprot">321614</id>\r
3281                                                   <code>PHANO</code>\r
3282                                                   <scientific_name>Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)</scientific_name>\r
3283                                                   <common_name>Glume blotch fungus</common_name>\r
3284                                                   <synonym>Septoria nodorum</synonym>\r
3285                                                   <rank>strain</rank>\r
3286                                                 </taxonomy>\r
3287                                               </clade>\r
3288                                             </clade>\r
3289                                           </clade>\r
3290                                         </clade>\r
3291                                         <clade>\r
3292                                           <taxonomy>\r
3293                                             <id provider="uniprot">28568</id>\r
3294                                             <scientific_name>Trichocomaceae</scientific_name>\r
3295                                             <rank>family</rank>\r
3296                                           </taxonomy>\r
3297                                           <clade>\r
3298                                             <taxonomy>\r
3299                                               <id provider="uniprot">5052</id>\r
3300                                               <scientific_name>Aspergillus</scientific_name>\r
3301                                               <rank>genus</rank>\r
3302                                             </taxonomy>\r
3303                                             <clade>\r
3304                                               <taxonomy>\r
3305                                                 <id provider="uniprot">332952</id>\r
3306                                                 <code>ASPFN</code>\r
3307                                                 <scientific_name>Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)</scientific_name>\r
3308                                                 <synonym>Aspergillus flavus NRRL3357</synonym>\r
3309                                                 <rank>strain</rank>\r
3310                                                 <uri>http://www.jhunewsletter.com/wp-content/uploads/2012/11/b8fungi.jpeg</uri>\r
3311                                               </taxonomy>\r
3312                                             </clade>\r
3313                                             <clade>\r
3314                                               <taxonomy>\r
3315                                                 <id provider="uniprot">425011</id>\r
3316                                                 <code>ASPNC</code>\r
3317                                                 <scientific_name>Aspergillus niger (strain CBS 513.88 / FGSC A1513)</scientific_name>\r
3318                                                 <synonym>Aspergillus niger CBS 513.88</synonym>\r
3319                                                 <rank>strain</rank>\r
3320                                                 <uri>http://www.vetmed.wisc.edu/students/vetmycology/15.jpg</uri>\r
3321                                               </taxonomy>\r
3322                                             </clade>\r
3323                                             <clade>\r
3324                                               <taxonomy>\r
3325                                                 <id provider="uniprot">344612</id>\r
3326                                                 <code>ASPCL</code>\r
3327                                                 <scientific_name>Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)</scientific_name>\r
3328                                                 <synonym>Aspergillus clavatus NRRL 1</synonym>\r
3329                                               </taxonomy>\r
3330                                             </clade>\r
3331                                           </clade>\r
3332                                           <clade>\r
3333                                             <name>Neosartorya &amp; Emericella</name>\r
3334                                             <clade>\r
3335                                               <taxonomy>\r
3336                                                 <id provider="uniprot">227321</id>\r
3337                                                 <code>EMENI</code>\r
3338                                                 <scientific_name>Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)</scientific_name>\r
3339                                                 <authority>Vuill. 1927</authority>\r
3340                                                 <synonym>Aspergillus nidulans</synonym>\r
3341                                                 <rank>strain</rank>\r
3342                                               </taxonomy>\r
3343                                             </clade>\r
3344                                             <clade>\r
3345                                               <taxonomy>\r
3346                                                 <id provider="uniprot">331117</id>\r
3347                                                 <code>NEOFI</code>\r
3348                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
3349                                                 <synonym>Aspergillus fischerianus</synonym>\r
3350                                                 <rank>strain</rank>\r
3351                                               </taxonomy>\r
3352                                             </clade>\r
3353                                           </clade>\r
3354                                         </clade>\r
3355                                       </clade>\r
3356                                       <clade>\r
3357                                         <taxonomy>\r
3358                                           <id provider="uniprot">33183</id>\r
3359                                           <scientific_name>Onygenales</scientific_name>\r
3360                                           <rank>order</rank>\r
3361                                         </taxonomy>\r
3362                                         <reference>\r
3363                                           <desc>The Ajellomycetaceae, a new family of vertebrate-associated Onygenales</desc>\r
3364                                         </reference>\r
3365                                         <reference>\r
3366                                         </reference>\r
3367                                         <clade>\r
3368                                           <name>mitosporic Onygenales &amp; Onygenaceae</name>\r
3369                                           <clade>\r
3370                                             <taxonomy>\r
3371                                               <id provider="uniprot">246410</id>\r
3372                                               <code>COCIM</code>\r
3373                                               <scientific_name>Coccidioides immitis (strain RS)</scientific_name>\r
3374                                               <common_name>Valley fever fungus</common_name>\r
3375                                               <synonym>Coccidioides immitis RS</synonym>\r
3376                                             </taxonomy>\r
3377                                           </clade>\r
3378                                           <clade>\r
3379                                             <taxonomy>\r
3380                                               <id provider="uniprot">336963</id>\r
3381                                               <code>UNCRE</code>\r
3382                                               <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
3383                                               <rank>strain</rank>\r
3384                                             </taxonomy>\r
3385                                           </clade>\r
3386                                         </clade>\r
3387                                         <clade>\r
3388                                           <taxonomy>\r
3389                                             <id provider="uniprot">447093</id>\r
3390                                             <code>AJECG</code>\r
3391                                             <scientific_name>Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432)</scientific_name>\r
3392                                             <common_name>Darling&apos;s disease fungus</common_name>\r
3393                                             <synonym>Histoplasma capsulatum</synonym>\r
3394                                           </taxonomy>\r
3395                                         </clade>\r
3396                                       </clade>\r
3397                                     </clade>\r
3398                                     <clade>\r
3399                                       <taxonomy>\r
3400                                         <id provider="uniprot">656061</id>\r
3401                                         <code>TUBMM</code>\r
3402                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
3403                                         <common_name>Perigord black truffle</common_name>\r
3404                                         <synonym>Tuber melanosporum Mel28</synonym>\r
3405                                         <rank>strain</rank>\r
3406                                         <uri>http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg</uri>\r
3407                                       </taxonomy>\r
3408                                     </clade>\r
3409                                   </clade>\r
3410                                   <clade>\r
3411                                     <taxonomy>\r
3412                                       <id provider="uniprot">4892</id>\r
3413                                       <scientific_name>Saccharomycetales</scientific_name>\r
3414                                       <common_name>budding yeasts</common_name>\r
3415                                       <rank>order</rank>\r
3416                                     </taxonomy>\r
3417                                     <reference doi="10.1186/1471-2148-6-99">\r
3418                                       <desc>A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis</desc>\r
3419                                     </reference>\r
3420                                     <reference>\r
3421                                     </reference>\r
3422                                     <clade>\r
3423                                       <name>mitosporic Saccharomycetales &amp; Debaryomycetaceae &amp; Saccharomycetaceae</name>\r
3424                                       <clade>\r
3425                                         <taxonomy>\r
3426                                           <id provider="uniprot">4893</id>\r
3427                                           <scientific_name>Saccharomycetaceae</scientific_name>\r
3428                                           <rank>family</rank>\r
3429                                         </taxonomy>\r
3430                                         <clade>\r
3431                                           <name>Naumovozyma &amp; Saccharomyces</name>\r
3432                                           <clade>\r
3433                                             <taxonomy>\r
3434                                               <id provider="uniprot">1064592</id>\r
3435                                               <code>NAUCC</code>\r
3436                                               <scientific_name>Naumovozyma castellii (strain ATCC 76901 / CBS 4309 / NBRC 1992 / NRRL Y-12630)</scientific_name>\r
3437                                               <common_name>Yeast</common_name>\r
3438                                               <synonym>Saccharomyces castellii</synonym>\r
3439                                               <rank>strain</rank>\r
3440                                             </taxonomy>\r
3441                                           </clade>\r
3442                                           <clade>\r
3443                                             <taxonomy>\r
3444                                               <id provider="uniprot">559292</id>\r
3445                                               <code>YEAST</code>\r
3446                                               <scientific_name>Saccharomyces cerevisiae (strain ATCC 204508 / S288c)</scientific_name>\r
3447                                               <common_name>Baker&apos;s yeast</common_name>\r
3448                                               <rank>strain</rank>\r
3449                                             </taxonomy>\r
3450                                           </clade>\r
3451                                         </clade>\r
3452                                         <clade>\r
3453                                           <name>Eremothecium &amp; Kluyveromyces</name>\r
3454                                           <clade>\r
3455                                             <taxonomy>\r
3456                                               <id provider="uniprot">284590</id>\r
3457                                               <code>KLULA</code>\r
3458                                               <scientific_name>Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)</scientific_name>\r
3459                                               <common_name>Yeast</common_name>\r
3460                                               <synonym>Candida sphaerica</synonym>\r
3461                                               <synonym>Kluyveromyces lactis NRRL Y-1140</synonym>\r
3462                                             </taxonomy>\r
3463                                           </clade>\r
3464                                           <clade>\r
3465                                             <taxonomy>\r
3466                                               <id provider="uniprot">284811</id>\r
3467                                               <code>ASHGO</code>\r
3468                                               <scientific_name>Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)</scientific_name>\r
3469                                               <common_name>Yeast</common_name>\r
3470                                               <synonym>Eremothecium gossypii</synonym>\r
3471                                             </taxonomy>\r
3472                                           </clade>\r
3473                                         </clade>\r
3474                                       </clade>\r
3475                                       <clade>\r
3476                                         <name>Debaryomyces &amp; Candida</name>\r
3477                                         <clade>\r
3478                                           <taxonomy>\r
3479                                             <id provider="uniprot">5475</id>\r
3480                                             <scientific_name>Candida</scientific_name>\r
3481                                             <synonym>Torulopsis</synonym>\r
3482                                             <rank>genus</rank>\r
3483                                           </taxonomy>\r
3484                                           <clade>\r
3485                                             <taxonomy>\r
3486                                               <id provider="uniprot">237561</id>\r
3487                                               <code>CANAL</code>\r
3488                                               <scientific_name>Candida albicans (strain SC5314 / ATCC MYA-2876)</scientific_name>\r
3489                                               <common_name>Yeast</common_name>\r
3490                                               <rank>strain</rank>\r
3491                                             </taxonomy>\r
3492                                           </clade>\r
3493                                           <clade>\r
3494                                             <taxonomy>\r
3495                                               <id provider="uniprot">294747</id>\r
3496                                               <code>CANTT</code>\r
3497                                               <scientific_name>Candida tropicalis (strain ATCC MYA-3404 / T1)</scientific_name>\r
3498                                               <common_name>Yeast</common_name>\r
3499                                               <rank>strain</rank>\r
3500                                             </taxonomy>\r
3501                                           </clade>\r
3502                                         </clade>\r
3503                                         <clade>\r
3504                                           <taxonomy>\r
3505                                             <id provider="uniprot">284592</id>\r
3506                                             <code>DEBHA</code>\r
3507                                             <scientific_name>Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)</scientific_name>\r
3508                                             <common_name>Yeast</common_name>\r
3509                                             <synonym>Torulaspora hansenii</synonym>\r
3510                                             <synonym>Debaryomyces hansenii CBS767</synonym>\r
3511                                           </taxonomy>\r
3512                                         </clade>\r
3513                                       </clade>\r
3514                                     </clade>\r
3515                                     <clade>\r
3516                                       <taxonomy>\r
3517                                         <id provider="uniprot">284591</id>\r
3518                                         <code>YARLI</code>\r
3519                                         <scientific_name>Yarrowia lipolytica (strain CLIB 122 / E 150)</scientific_name>\r
3520                                         <common_name>Yeast</common_name>\r
3521                                         <synonym>Candida lipolytica</synonym>\r
3522                                         <rank>strain</rank>\r
3523                                       </taxonomy>\r
3524                                     </clade>\r
3525                                   </clade>\r
3526                                 </clade>\r
3527                                 <clade>\r
3528                                   <taxonomy>\r
3529                                     <id provider="uniprot">451866</id>\r
3530                                     <scientific_name>Taphrinomycotina</scientific_name>\r
3531                                     <rank>subphylum</rank>\r
3532                                   </taxonomy>\r
3533                                   <clade>\r
3534                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
3535                                     <clade>\r
3536                                       <taxonomy>\r
3537                                         <id provider="uniprot">4895</id>\r
3538                                         <scientific_name>Schizosaccharomyces</scientific_name>\r
3539                                         <rank>genus</rank>\r
3540                                       </taxonomy>\r
3541                                       <clade>\r
3542                                         <taxonomy>\r
3543                                           <id provider="uniprot">402676</id>\r
3544                                           <code>SCHJY</code>\r
3545                                           <scientific_name>Schizosaccharomyces japonicus (strain yFS275 / FY16936)</scientific_name>\r
3546                                           <common_name>Fission yeast</common_name>\r
3547                                           <rank>strain</rank>\r
3548                                         </taxonomy>\r
3549                                       </clade>\r
3550                                       <clade>\r
3551                                         <taxonomy>\r
3552                                           <id provider="uniprot">4899</id>\r
3553                                           <code>SCHOT</code>\r
3554                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>\r
3555                                           <common_name>Fission yeast</common_name>\r
3556                                           <rank>species</rank>\r
3557                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>\r
3558                                         </taxonomy>\r
3559                                       </clade>\r
3560                                       <clade>\r
3561                                         <taxonomy>\r
3562                                           <id provider="uniprot">284812</id>\r
3563                                           <code>SCHPO</code>\r
3564                                           <scientific_name>Schizosaccharomyces pombe (strain 972 / ATCC 24843)</scientific_name>\r
3565                                           <common_name>Fission yeast</common_name>\r
3566                                           <rank>strain</rank>\r
3567                                         </taxonomy>\r
3568                                       </clade>\r
3569                                     </clade>\r
3570                                     <clade>\r
3571                                       <taxonomy>\r
3572                                         <id provider="uniprot">4754</id>\r
3573                                         <code>PNECA</code>\r
3574                                         <scientific_name>Pneumocystis carinii</scientific_name>\r
3575                                         <rank>species</rank>\r
3576                                       </taxonomy>\r
3577                                     </clade>\r
3578                                   </clade>\r
3579                                   <clade>\r
3580                                     <taxonomy>\r
3581                                       <id provider="uniprot">5606</id>\r
3582                                       <scientific_name>Saitoella complicata</scientific_name>\r
3583                                       <rank>species</rank>\r
3584                                     </taxonomy>\r
3585                                   </clade>\r
3586                                 </clade>\r
3587                               </clade>\r
3588                               <clade>\r
3589                                 <taxonomy>\r
3590                                   <id provider="uniprot">5204</id>\r
3591                                   <scientific_name>Basidiomycota</scientific_name>\r
3592                                   <rank>phylum</rank>\r
3593                                 </taxonomy>\r
3594                                 <clade>\r
3595                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
3596                                   <clade>\r
3597                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
3598                                     <clade>\r
3599                                       <taxonomy>\r
3600                                         <id provider="uniprot">5302</id>\r
3601                                         <scientific_name>Agaricomycotina</scientific_name>\r
3602                                       </taxonomy>\r
3603                                       <clade>\r
3604                                         <taxonomy>\r
3605                                           <id provider="uniprot">155619</id>\r
3606                                           <scientific_name>Homobasidiomycetes</scientific_name>\r
3607                                           <rank>class</rank>\r
3608                                         </taxonomy>\r
3609                                         <reference doi="10.1098/rspb.2002.2123">\r
3610                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
3611                                         </reference>\r
3612                                         <clade>\r
3613                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
3614                                           <clade>\r
3615                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
3616                                             <clade>\r
3617                                               <taxonomy>\r
3618                                                 <id provider="uniprot">452333</id>\r
3619                                                 <scientific_name>Agaricomycetidae</scientific_name>\r
3620                                                 <rank>subclass</rank>\r
3621                                               </taxonomy>\r
3622                                               <clade>\r
3623                                                 <name>Agaricales &amp; Boletales</name>\r
3624                                                 <clade>\r
3625                                                   <taxonomy>\r
3626                                                     <id provider="uniprot">5338</id>\r
3627                                                     <scientific_name>Agaricales</scientific_name>\r
3628                                                     <rank>order</rank>\r
3629                                                   </taxonomy>\r
3630                                                   <clade>\r
3631                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
3632                                                     <clade>\r
3633                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
3634                                                       <clade>\r
3635                                                         <name>Agaricus &amp; Coprinopsis</name>\r
3636                                                         <clade>\r
3637                                                           <taxonomy>\r
3638                                                             <id provider="uniprot">597362</id>\r
3639                                                             <code>AGABU</code>\r
3640                                                             <scientific_name>Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392)</scientific_name>\r
3641                                                             <common_name>White button mushroom</common_name>\r
3642                                                             <synonym>Agaricus bisporus var. burnettii JB137-S8</synonym>\r
3643                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
3644                                                           </taxonomy>\r
3645                                                         </clade>\r
3646                                                         <clade>\r
3647                                                           <taxonomy>\r
3648                                                             <id provider="uniprot">5346</id>\r
3649                                                             <code>COPC7</code>\r
3650                                                             <scientific_name>Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)</scientific_name>\r
3651                                                             <common_name>Inky cap fungus</common_name>\r
3652                                                             <synonym>Hormographiella aspergillata</synonym>\r
3653                                                             <rank>strain</rank>\r
3654                                                             <uri>http://www.pnas.org/content/107/26/cover-expansion.medium.gif</uri>\r
3655                                                           </taxonomy>\r
3656                                                         </clade>\r
3657                                                       </clade>\r
3658                                                       <clade>\r
3659                                                         <taxonomy>\r
3660                                                           <id provider="uniprot">486041</id>\r
3661                                                           <code>LACBS</code>\r
3662                                                           <scientific_name>Laccaria bicolor</scientific_name>\r
3663                                                           <common_name>Bicoloured deceiver</common_name>\r
3664                                                           <synonym>Laccaria laccata var. bicolor</synonym>\r
3665                                                           <synonym>Laccaria bicolor S238N-H82</synonym>\r
3666                                                           <rank>strain</rank>\r
3667                                                           <uri>http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG</uri>\r
3668                                                         </taxonomy>\r
3669                                                       </clade>\r
3670                                                     </clade>\r
3671                                                     <clade>\r
3672                                                       <taxonomy>\r
3673                                                         <id provider="uniprot">206324</id>\r
3674                                                         <scientific_name>Gymnopus luxurians</scientific_name>\r
3675                                                         <rank>species</rank>\r
3676                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
3677                                                       </taxonomy>\r
3678                                                     </clade>\r
3679                                                   </clade>\r
3680                                                   <clade>\r
3681                                                     <taxonomy>\r
3682                                                       <id provider="uniprot">5322</id>\r
3683                                                       <code>PLEOS</code>\r
3684                                                       <scientific_name>Pleurotus ostreatus</scientific_name>\r
3685                                                       <common_name>Oyster mushroom</common_name>\r
3686                                                       <synonym>White-rot fungus</synonym>\r
3687                                                       <rank>species</rank>\r
3688                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
3689                                                     </taxonomy>\r
3690                                                   </clade>\r
3691                                                 </clade>\r
3692                                                 <clade>\r
3693                                                   <taxonomy>\r
3694                                                     <id provider="uniprot">68889</id>\r
3695                                                     <scientific_name>Boletales</scientific_name>\r
3696                                                     <synonym>Melanogastrales</synonym>\r
3697                                                     <synonym>Sclerodermatales</synonym>\r
3698                                                     <rank>order</rank>\r
3699                                                   </taxonomy>\r
3700                                                   <clade>\r
3701                                                     <taxonomy>\r
3702                                                       <id provider="uniprot">227334</id>\r
3703                                                       <scientific_name>Coniophorineae</scientific_name>\r
3704                                                       <rank>suborder</rank>\r
3705                                                     </taxonomy>\r
3706                                                     <clade>\r
3707                                                       <taxonomy>\r
3708                                                         <id provider="uniprot">80637</id>\r
3709                                                         <code>CPUXX</code>\r
3710                                                         <scientific_name>Coniophora puteana</scientific_name>\r
3711                                                         <authority>Schum. ex Fries</authority>\r
3712                                                         <common_name>cellar fungus</common_name>\r
3713                                                         <rank>species</rank>\r
3714                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
3715                                                       </taxonomy>\r
3716                                                     </clade>\r
3717                                                     <clade>\r
3718                                                       <taxonomy>\r
3719                                                         <id provider="uniprot">578457</id>\r
3720                                                         <code>SERL9</code>\r
3721                                                         <scientific_name>Serpula lacrymans var. lacrymans (strain S7.9)</scientific_name>\r
3722                                                         <common_name>Dry rot fungus</common_name>\r
3723                                                         <uri>http://www.anbg.gov.au/fungi/images/0160.jpg</uri>\r
3724                                                       </taxonomy>\r
3725                                                     </clade>\r
3726                                                   </clade>\r
3727                                                   <clade>\r
3728                                                     <taxonomy>\r
3729                                                       <id provider="uniprot">388859</id>\r
3730                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>\r
3731                                                       <common_name>Spiny dry rot fungus</common_name>\r
3732                                                       <rank>species</rank>\r
3733                                                       <uri>http://genome.jgi.doe.gov/public/Hydpi1/Hydnomerulius_pinastri.jpg</uri>\r
3734                                                     </taxonomy>\r
3735                                                   </clade>\r
3736                                                 </clade>\r
3737                                               </clade>\r
3738                                               <clade>\r
3739                                                 <taxonomy>\r
3740                                                   <id provider="uniprot">202697</id>\r
3741                                                   <code>JARXX</code>\r
3742                                                   <scientific_name>Jaapia argillacea</scientific_name>\r
3743                                                   <rank>species</rank>\r
3744                                                   <uri>http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg</uri>\r
3745                                                 </taxonomy>\r
3746                                               </clade>\r
3747                                             </clade>\r
3748                                             <clade>\r
3749                                               <taxonomy>\r
3750                                                 <id provider="uniprot">104355</id>\r
3751                                                 <code>GLOTR</code>\r
3752                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>\r
3753                                                 <common_name>Brown rot fungus</common_name>\r
3754                                                 <rank>species</rank>\r
3755                                                 <uri>http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg</uri>\r
3756                                               </taxonomy>\r
3757                                             </clade>\r
3758                                           </clade>\r
3759                                           <clade>\r
3760                                             <taxonomy>\r
3761                                               <id provider="uniprot">5303</id>\r
3762                                               <scientific_name>Aphyllophorales</scientific_name>\r
3763                                               <authority>Gäum. (1926)</authority>\r
3764                                               <common_name>Shelf Fungi</common_name>\r
3765                                               <synonym>Polyporales</synonym>\r
3766                                               <rank>order</rank>\r
3767                                             </taxonomy>\r
3768                                             <clade>\r
3769                                               <taxonomy>\r
3770                                                 <id provider="uniprot">83233</id>\r
3771                                                 <scientific_name>Coriolaceae</scientific_name>\r
3772                                                 <rank>family</rank>\r
3773                                               </taxonomy>\r
3774                                               <reference doi="10.1017/S1477200005001623">\r
3775                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
3776                                               </reference>\r
3777                                               <reference>\r
3778                                               </reference>\r
3779                                               <reference>\r
3780                                               </reference>\r
3781                                               <clade>\r
3782                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
3783                                                 <clade>\r
3784                                                   <name>Antrodia clade</name>\r
3785                                                   <taxonomy>\r
3786                                                     <common_name>Antrodia clade</common_name>\r
3787                                                   </taxonomy>\r
3788                                                   <clade>\r
3789                                                     <taxonomy>\r
3790                                                       <id provider="uniprot">40483</id>\r
3791                                                       <code>FPIXX</code>\r
3792                                                       <scientific_name>Fomitopsis pinicola</scientific_name>\r
3793                                                       <authority>(Swartz) P. Karsten</authority>\r
3794                                                       <common_name>Red banded polypore</common_name>\r
3795                                                       <synonym>Fomes pinicola</synonym>\r
3796                                                       <synonym>Boletus pinicola</synonym>\r
3797                                                       <rank>species</rank>\r
3798                                                       <uri>http://www.mykoweb.com/CAF/photos/Fomitopsis_pinicola(mgw-02).jpg</uri>\r
3799                                                     </taxonomy>\r
3800                                                   </clade>\r
3801                                                   <clade>\r
3802                                                     <taxonomy>\r
3803                                                       <id provider="uniprot">104341</id>\r
3804                                                       <code>PPLXX</code>\r
3805                                                       <scientific_name>Postia placenta</scientific_name>\r
3806                                                       <synonym>Rhodonia placenta</synonym>\r
3807                                                       <rank>species</rank>\r
3808                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
3809                                                     </taxonomy>\r
3810                                                   </clade>\r
3811                                                 </clade>\r
3812                                                 <clade>\r
3813                                                   <name>core polyporoid clade</name>\r
3814                                                   <taxonomy>\r
3815                                                     <common_name>core polyporoid clade</common_name>\r
3816                                                   </taxonomy>\r
3817                                                   <clade>\r
3818                                                     <taxonomy>\r
3819                                                       <id provider="uniprot">5325</id>\r
3820                                                       <code>TRAVE</code>\r
3821                                                       <scientific_name>Trametes versicolor</scientific_name>\r
3822                                                       <authority>(L.) Lloyd 1921</authority>\r
3823                                                       <common_name>White-rot fungus</common_name>\r
3824                                                       <synonym>Coriolus versicolor</synonym>\r
3825                                                       <synonym>Bjerkandera versicolor</synonym>\r
3826                                                       <rank>species</rank>\r
3827                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0304/0521.jpeg</uri>\r
3828                                                     </taxonomy>\r
3829                                                   </clade>\r
3830                                                   <clade>\r
3831                                                     <taxonomy>\r
3832                                                       <id provider="uniprot">742152</id>\r
3833                                                       <code>WOLCO</code>\r
3834                                                       <scientific_name>Wolfiporia cocos (strain MD-104)</scientific_name>\r
3835                                                       <common_name>Brown rot fungus</common_name>\r
3836                                                       <synonym>Wolfiporia cocos MD-104 SS10</synonym>\r
3837                                                       <uri>http://genome.jgi-psf.org/public/Wolco1/W_cocos_CA-b1.jpg</uri>\r
3838                                                     </taxonomy>\r
3839                                                   </clade>\r
3840                                                 </clade>\r
3841                                               </clade>\r
3842                                               <clade>\r
3843                                                 <taxonomy>\r
3844                                                   <id provider="uniprot">42742</id>\r
3845                                                   <code>CERSU</code>\r
3846                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
3847                                                   <rank>species</rank>\r
3848                                                 </taxonomy>\r
3849                                               </clade>\r
3850                                             </clade>\r
3851                                             <clade>\r
3852                                               <taxonomy>\r
3853                                                 <id provider="uniprot">732165</id>\r
3854                                                 <code>DICSQ</code>\r
3855                                                 <scientific_name>Dichomitus squalens (strain LYAD-421)</scientific_name>\r
3856                                                 <common_name>Western red white-rot fungus</common_name>\r
3857                                                 <synonym>Dichomitus squalens LYAD-421 SS1</synonym>\r
3858                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
3859                                               </taxonomy>\r
3860                                             </clade>\r
3861                                           </clade>\r
3862                                         </clade>\r
3863                                         <clade>\r
3864                                           <taxonomy>\r
3865                                             <id provider="uniprot">13563</id>\r
3866                                             <code>HETAN</code>\r
3867                                             <scientific_name>Heterobasidion annosum</scientific_name>\r
3868                                             <common_name>Root rot fungus</common_name>\r
3869                                             <rank>species</rank>\r
3870                                           </taxonomy>\r
3871                                         </clade>\r
3872                                       </clade>\r
3873                                       <clade>\r
3874                                         <taxonomy>\r
3875                                           <id provider="uniprot">5215</id>\r
3876                                           <scientific_name>Tremellaceae</scientific_name>\r
3877                                           <rank>family</rank>\r
3878                                         </taxonomy>\r
3879                                         <clade>\r
3880                                           <taxonomy>\r
3881                                             <id provider="uniprot">5207</id>\r
3882                                             <code>CRYNE</code>\r
3883                                             <scientific_name>Cryptococcus neoformans</scientific_name>\r
3884                                             <synonym>Filobasidiella neoformans</synonym>\r
3885                                             <rank>species</rank>\r
3886                                           </taxonomy>\r
3887                                         </clade>\r
3888                                         <clade>\r
3889                                           <taxonomy>\r
3890                                             <id provider="eol">1029985</id>\r
3891                                             <code>TREME</code>\r
3892                                             <scientific_name>Tremella mesenterica</scientific_name>\r
3893                                             <authority>Pers. 1800</authority>\r
3894                                             <common_name>Jelly fungus</common_name>\r
3895                                             <synonym>Yellow Brain</synonym>\r
3896                                             <synonym>Tremella lutescens</synonym>\r
3897                                             <rank>species</rank>\r
3898                                           </taxonomy>\r
3899                                         </clade>\r
3900                                       </clade>\r
3901                                     </clade>\r
3902                                     <clade>\r
3903                                       <taxonomy>\r
3904                                         <id provider="uniprot">452284</id>\r
3905                                         <scientific_name>Ustilaginomycotina</scientific_name>\r
3906                                         <rank>subphylum</rank>\r
3907                                       </taxonomy>\r
3908                                       <clade>\r
3909                                         <taxonomy>\r
3910                                           <id provider="uniprot">425265</id>\r
3911                                           <code>MALGO</code>\r
3912                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
3913                                           <common_name>Dandruff-associated fungus</common_name>\r
3914                                         </taxonomy>\r
3915                                       </clade>\r
3916                                       <clade>\r
3917                                         <taxonomy>\r
3918                                           <id provider="uniprot">237631</id>\r
3919                                           <code>USTMA</code>\r
3920                                           <scientific_name>Ustilago maydis (strain 521 / FGSC 9021)</scientific_name>\r
3921                                           <common_name>Corn smut fungus</common_name>\r
3922                                           <rank>species</rank>\r
3923                                         </taxonomy>\r
3924                                       </clade>\r
3925                                     </clade>\r
3926                                   </clade>\r
3927                                   <clade>\r
3928                                     <taxonomy>\r
3929                                       <id provider="uniprot">29000</id>\r
3930                                       <scientific_name>Pucciniomycotina</scientific_name>\r
3931                                       <rank>subphylum</rank>\r
3932                                     </taxonomy>\r
3933                                     <clade>\r
3934                                       <taxonomy>\r
3935                                         <id provider="uniprot">5258</id>\r
3936                                         <scientific_name>Pucciniales</scientific_name>\r
3937                                         <common_name>rusts</common_name>\r
3938                                         <rank>order</rank>\r
3939                                       </taxonomy>\r
3940                                       <clade>\r
3941                                         <taxonomy>\r
3942                                           <id provider="uniprot">747676</id>\r
3943                                           <code>MELLP</code>\r
3944                                           <scientific_name>Melampsora larici-populina (strain 98AG31 / pathotype 3-4-7)</scientific_name>\r
3945                                           <authority>Kleb. 1902</authority>\r
3946                                           <common_name>Poplar leaf rust fungus</common_name>\r
3947                                           <synonym>Melampsora larici-populina 98AG31</synonym>\r
3948                                           <synonym>Melampsora laricis-populina 98AG31</synonym>\r
3949                                           <rank>strain</rank>\r
3950                                         </taxonomy>\r
3951                                       </clade>\r
3952                                       <clade>\r
3953                                         <taxonomy>\r
3954                                           <id provider="uniprot">5297</id>\r
3955                                           <code>PUCGR</code>\r
3956                                           <scientific_name>Puccinia graminis</scientific_name>\r
3957                                           <authority>Pers. 1794</authority>\r
3958                                           <common_name>Black stem rust fungus</common_name>\r
3959                                           <rank>species</rank>\r
3960                                         </taxonomy>\r
3961                                       </clade>\r
3962                                     </clade>\r
3963                                     <clade>\r
3964                                       <taxonomy>\r
3965                                         <id provider="uniprot">89013</id>\r
3966                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
3967                                       </taxonomy>\r
3968                                       <clade>\r
3969                                         <taxonomy>\r
3970                                           <id provider="uniprot">29898</id>\r
3971                                           <code>RHOGR</code>\r
3972                                           <scientific_name>Rhodotorula graminis</scientific_name>\r
3973                                           <common_name>Yeast</common_name>\r
3974                                           <rank>species</rank>\r
3975                                         </taxonomy>\r
3976                                       </clade>\r
3977                                       <clade>\r
3978                                         <taxonomy>\r
3979                                           <id provider="uniprot">40563</id>\r
3980                                           <code>SPORO</code>\r
3981                                           <scientific_name>Sporobolomyces roseus</scientific_name>\r
3982                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
3983                                           <rank>species</rank>\r
3984                                         </taxonomy>\r
3985                                       </clade>\r
3986                                     </clade>\r
3987                                   </clade>\r
3988                                 </clade>\r
3989                                 <clade>\r
3990                                   <taxonomy>\r
3991                                     <id provider="uniprot">671144</id>\r
3992                                     <code>WALSC</code>\r
3993                                     <scientific_name>Wallemia sebi (strain ATCC MYA-4683 / CBS 633.66)</scientific_name>\r
3994                                     <rank>strain</rank>\r
3995                                   </taxonomy>\r
3996                                 </clade>\r
3997                               </clade>\r
3998                             </clade>\r
3999                             <clade>\r
4000                               <taxonomy>\r
4001                                 <id provider="uniprot">747089</id>\r
4002                                 <code>RHIID</code>\r
4003                                 <scientific_name>Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194)</scientific_name>\r
4004                                 <common_name>Arbuscular mycorrhizal fungus</common_name>\r
4005                                 <synonym>Glomus intraradices</synonym>\r
4006                                 <uri>http://www.i-beg.eu/images/BEG53.jpg</uri>\r
4007                               </taxonomy>\r
4008                             </clade>\r
4009                           </clade>\r
4010                           <clade>\r
4011                             <taxonomy>\r
4012                               <id provider="uniprot">451507</id>\r
4013                               <scientific_name>Mucoromycotina</scientific_name>\r
4014                               <rank>subphylum</rank>\r
4015                             </taxonomy>\r
4016                             <clade>\r
4017                               <taxonomy>\r
4018                                 <id provider="uniprot">4827</id>\r
4019                                 <scientific_name>Mucorales</scientific_name>\r
4020                                 <common_name>pin moulds</common_name>\r
4021                                 <rank>order</rank>\r
4022                               </taxonomy>\r
4023                               <clade>\r
4024                                 <taxonomy>\r
4025                                   <id provider="uniprot">1344963</id>\r
4026                                   <scientific_name>Mucorineae</scientific_name>\r
4027                                   <rank>suborder</rank>\r
4028                                 </taxonomy>\r
4029                                 <clade>\r
4030                                   <taxonomy>\r
4031                                     <id provider="uniprot">36080</id>\r
4032                                     <code>MUCCI</code>\r
4033                                     <scientific_name>Mucor circinelloides</scientific_name>\r
4034                                     <synonym>Mucor griseo-roseus</synonym>\r
4035                                     <rank>species</rank>\r
4036                                   </taxonomy>\r
4037                                 </clade>\r
4038                                 <clade>\r
4039                                   <taxonomy>\r
4040                                     <id provider="uniprot">64495</id>\r
4041                                     <code>RHIOR</code>\r
4042                                     <scientific_name>Rhizopus oryzae</scientific_name>\r
4043                                     <common_name>Mucormycosis agent</common_name>\r
4044                                     <synonym>Rhizopus delemar</synonym>\r
4045                                     <synonym>Rhizopus arrhizus var. delemar</synonym>\r
4046                                     <rank>species</rank>\r
4047                                   </taxonomy>\r
4048                                 </clade>\r
4049                               </clade>\r
4050                               <clade>\r
4051                                 <taxonomy>\r
4052                                   <id provider="uniprot">4837</id>\r
4053                                   <code>PHYBL</code>\r
4054                                   <scientific_name>Phycomyces blakesleeanus</scientific_name>\r
4055                                   <rank>species</rank>\r
4056                                 </taxonomy>\r
4057                               </clade>\r
4058                               <clade>\r
4059                                 <taxonomy>\r
4060                                   <id provider="uniprot">246409</id>\r
4061                                   <code>RHIO9</code>\r
4062                                   <scientific_name>Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)</scientific_name>\r
4063                                   <common_name>Mucormycosis agent</common_name>\r
4064                                   <synonym>Rhizopus arrhizus var. delemar</synonym>\r
4065                                 </taxonomy>\r
4066                               </clade>\r
4067                             </clade>\r
4068                             <clade>\r
4069                               <taxonomy>\r
4070                                 <id provider="uniprot">1069443</id>\r
4071                                 <code>MVNXX</code>\r
4072                                 <scientific_name>Mortierella verticillata NRRL 6337</scientific_name>\r
4073                                 <rank>species</rank>\r
4074                                 <uri>http://www.ual.es/GruposInv/myco-ual/galeria17/mortierella.jpg</uri>\r
4075                                 <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
4076                               </taxonomy>\r
4077                             </clade>\r
4078                           </clade>\r
4079                         </clade>\r
4080                         <clade>\r
4081                           <taxonomy>\r
4082                             <id provider="uniprot">61392</id>\r
4083                             <code>CREXX</code>\r
4084                             <scientific_name>Coemansia reversa</scientific_name>\r
4085                             <rank>species</rank>\r
4086                             <uri>http://genome.jgi.doe.gov/public/Coere1/Coemansia.jpg</uri>\r
4087                           </taxonomy>\r
4088                         </clade>\r
4089                       </clade>\r
4090                       <clade>\r
4091                         <taxonomy>\r
4092                           <id provider="uniprot">28583</id>\r
4093                           <code>ALLMA</code>\r
4094                           <scientific_name>Allomyces macrogynus</scientific_name>\r
4095                           <rank>species</rank>\r
4096                         </taxonomy>\r
4097                       </clade>\r
4098                     </clade>\r
4099                     <clade>\r
4100                       <taxonomy>\r
4101                         <id provider="uniprot">4761</id>\r
4102                         <scientific_name>Chytridiomycota</scientific_name>\r
4103                         <common_name>chytrids</common_name>\r
4104                         <synonym>Mastigomycotina</synonym>\r
4105                         <rank>phylum</rank>\r
4106                       </taxonomy>\r
4107                       <clade>\r
4108                         <taxonomy>\r
4109                           <id provider="uniprot">451435</id>\r
4110                           <scientific_name>Chytridiomycetes</scientific_name>\r
4111                           <rank>class</rank>\r
4112                         </taxonomy>\r
4113                         <clade>\r
4114                           <taxonomy>\r
4115                             <id provider="uniprot">684364</id>\r
4116                             <code>BATDJ</code>\r
4117                             <scientific_name>Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211)</scientific_name>\r
4118                             <common_name>Frog chytrid fungus</common_name>\r
4119                             <rank>strain</rank>\r
4120                           </taxonomy>\r
4121                         </clade>\r
4122                         <clade>\r
4123                           <taxonomy>\r
4124                             <id provider="uniprot">109760</id>\r
4125                             <code>SPIPN</code>\r
4126                             <scientific_name>Spizellomyces punctatus</scientific_name>\r
4127                             <rank>species</rank>\r
4128                           </taxonomy>\r
4129                         </clade>\r
4130                       </clade>\r
4131                       <clade>\r
4132                         <taxonomy>\r
4133                           <id provider="uniprot">1123529</id>\r
4134                           <code>GONPR</code>\r
4135                           <scientific_name>Gonapodya prolifera</scientific_name>\r
4136                           <authority>A. Fisch. 1892</authority>\r
4137                           <common_name>Aquatic fungus</common_name>\r
4138                           <rank>species</rank>\r
4139                           <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
4140                         </taxonomy>\r
4141                       </clade>\r
4142                     </clade>\r
4143                   </clade>\r
4144                   <clade>\r
4145                     <taxonomy>\r
4146                       <id provider="uniprot">73868</id>\r
4147                       <code>PIRSE</code>\r
4148                       <scientific_name>Piromyces sp. (strain E2)</scientific_name>\r
4149                       <rank>species</rank>\r
4150                       <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
4151                     </taxonomy>\r
4152                   </clade>\r
4153                 </clade>\r
4154                 <clade>\r
4155                   <taxonomy>\r
4156                     <id provider="uniprot">6029</id>\r
4157                     <scientific_name>Microsporidia</scientific_name>\r
4158                     <rank>phylum</rank>\r
4159                   </taxonomy>\r
4160                   <reference>\r
4161                     <desc>Disseminated Infection Caused by Novel Species of Microsporidium, Thailand</desc>\r
4162                   </reference>\r
4163                   <clade>\r
4164                     <taxonomy>\r
4165                       <id provider="uniprot">6032</id>\r
4166                       <scientific_name>Apansporoblastina</scientific_name>\r
4167                       <rank>suborder</rank>\r
4168                     </taxonomy>\r
4169                     <clade>\r
4170                       <taxonomy>\r
4171                         <id provider="uniprot">6033</id>\r
4172                         <scientific_name>Encephalitozoon</scientific_name>\r
4173                         <rank>genus</rank>\r
4174                       </taxonomy>\r
4175                       <clade>\r
4176                         <taxonomy>\r
4177                           <id provider="uniprot">284813</id>\r
4178                           <code>ENCCU</code>\r
4179                           <scientific_name>Encephalitozoon cuniculi (strain GB-M1)</scientific_name>\r
4180                           <common_name>Microsporidian parasite</common_name>\r
4181                           <rank>strain</rank>\r
4182                           <uri>http://www.nature.com/modpathol/journal/v15/n5/images/3880566f7.jpg</uri>\r
4183                         </taxonomy>\r
4184                       </clade>\r
4185                       <clade>\r
4186                         <taxonomy>\r
4187                           <id provider="uniprot">907965</id>\r
4188                           <code>ENCHA</code>\r
4189                           <scientific_name>Encephalitozoon hellem (strain ATCC 50504)</scientific_name>\r
4190                           <common_name>Microsporidian parasite</common_name>\r
4191                           <rank>strain</rank>\r
4192                           <uri>http://ruby.fgcu.edu/courses/davidb/50249/web/Encephalitozoonhellem91.jpg</uri>\r
4193                         </taxonomy>\r
4194                       </clade>\r
4195                     </clade>\r
4196                     <clade>\r
4197                       <name>Nosematidae &amp; Enterocytozoonidae</name>\r
4198                       <clade>\r
4199                         <taxonomy>\r
4200                           <id provider="uniprot">993615</id>\r
4201                           <code>VITCO</code>\r
4202                           <scientific_name>Vittaforma corneae (strain ATCC 50505)</scientific_name>\r
4203                           <common_name>Microsporidian parasite</common_name>\r
4204                           <synonym>Nosema corneum</synonym>\r
4205                         </taxonomy>\r
4206                       </clade>\r
4207                       <clade>\r
4208                         <taxonomy>\r
4209                           <id provider="uniprot">481877</id>\r
4210                           <code>ENTBH</code>\r
4211                           <scientific_name>Enterocytozoon bieneusi (strain H348)</scientific_name>\r
4212                           <common_name>Microsporidian parasite</common_name>\r
4213                           <uri>http://www.biolib.cz/IMG/GAL/17310.jpg</uri>\r
4214                         </taxonomy>\r
4215                       </clade>\r
4216                     </clade>\r
4217                   </clade>\r
4218                   <clade>\r
4219                     <taxonomy>\r
4220                       <id provider="uniprot">35232</id>\r
4221                       <scientific_name>Pleistophoridae</scientific_name>\r
4222                       <rank>family</rank>\r
4223                     </taxonomy>\r
4224                     <clade>\r
4225                       <taxonomy>\r
4226                         <id provider="uniprot">72359</id>\r
4227                         <code>TRAHO</code>\r
4228                         <scientific_name>Trachipleistophora hominis</scientific_name>\r
4229                         <common_name>Microsporidian parasite</common_name>\r
4230                         <rank>species</rank>\r
4231                       </taxonomy>\r
4232                     </clade>\r
4233                     <clade>\r
4234                       <taxonomy>\r
4235                         <id provider="uniprot">948595</id>\r
4236                         <code>VAVCU</code>\r
4237                         <scientific_name>Vavraia culicis (isolate floridensis)</scientific_name>\r
4238                         <common_name>Microsporidian parasite</common_name>\r
4239                       </taxonomy>\r
4240                     </clade>\r
4241                   </clade>\r
4242                   <clade>\r
4243                     <taxonomy>\r
4244                       <id provider="uniprot">1003232</id>\r
4245                       <code>EDHAE</code>\r
4246                       <scientific_name>Edhazardia aedis (strain USNM 41457)</scientific_name>\r
4247                       <common_name>Microsporidian parasite</common_name>\r
4248                       <uri>http://wwx.inhs.illinois.edu/files/6813/4021/9153/4Edhazardia_aedis.jpg</uri>\r
4249                     </taxonomy>\r
4250                   </clade>\r
4251                 </clade>\r
4252               </clade>\r
4253               <clade>\r
4254                 <taxonomy>\r
4255                   <id provider="uniprot">1001604</id>\r
4256                   <scientific_name>Nucleariidae and Fonticula group</scientific_name>\r
4257                 </taxonomy>\r
4258                 <reference doi="10.1093/molbev/msp185">\r
4259                   <desc>Phylogeny of the ï¿½Forgotten� Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta</desc>\r
4260                 </reference>\r
4261                 <clade>\r
4262                   <taxonomy>\r
4263                     <id provider="uniprot">691883</id>\r
4264                     <code>FALXX</code>\r
4265                     <scientific_name>Fonticula alba</scientific_name>\r
4266                     <authority>Worley, Raper &amp; Hohl. 1979</authority>\r
4267                     <rank>species</rank>\r
4268                     <uri>http://mbe.oxfordjournals.org/content/26/12/2699/F2.medium.gif</uri>\r
4269                   </taxonomy>\r
4270                 </clade>\r
4271                 <clade>\r
4272                   <taxonomy>\r
4273                     <id provider="uniprot">154970</id>\r
4274                     <scientific_name>Nuclearia simplex</scientific_name>\r
4275                     <rank>species</rank>\r
4276                   </taxonomy>\r
4277                 </clade>\r
4278               </clade>\r
4279             </clade>\r
4280           </clade>\r
4281           <clade>\r
4282             <taxonomy>\r
4283               <id provider="uniprot">554915</id>\r
4284               <scientific_name>Amoebozoa</scientific_name>\r
4285             </taxonomy>\r
4286             <clade>\r
4287               <taxonomy>\r
4288                 <id provider="uniprot">33083</id>\r
4289                 <scientific_name>Dictyosteliida</scientific_name>\r
4290                 <common_name>dictyostelid cellular slime molds</common_name>\r
4291                 <rank>order</rank>\r
4292               </taxonomy>\r
4293               <clade>\r
4294                 <taxonomy>\r
4295                   <id provider="uniprot">5782</id>\r
4296                   <scientific_name>Dictyostelium</scientific_name>\r
4297                   <rank>genus</rank>\r
4298                 </taxonomy>\r
4299                 <reference doi="10.1186/1471-2148-11-84">\r
4300                   <desc>An expanded phylogeny of social amoebas (Dictyostelia) shows increasing diversity and new morphological patterns</desc>\r
4301                 </reference>\r
4302                 <reference>\r
4303                 </reference>\r
4304                 <reference>\r
4305                 </reference>\r
4306                 <clade>\r
4307                   <name>group 4</name>\r
4308                   <clade>\r
4309                     <taxonomy>\r
4310                       <id provider="uniprot">44689</id>\r
4311                       <code>DICDI</code>\r
4312                       <scientific_name>Dictyostelium discoideum</scientific_name>\r
4313                       <common_name>Slime mold</common_name>\r
4314                       <rank>species</rank>\r
4315                       <uri>http://www.tins.ne.jp/~tsukubagec/csm.GIF</uri>\r
4316                     </taxonomy>\r
4317                   </clade>\r
4318                   <clade>\r
4319                     <taxonomy>\r
4320                       <id provider="uniprot">5786</id>\r
4321                       <code>DICPU</code>\r
4322                       <scientific_name>Dictyostelium purpureum</scientific_name>\r
4323                       <common_name>Slime mold</common_name>\r
4324                       <rank>species</rank>\r
4325                     </taxonomy>\r
4326                   </clade>\r
4327                 </clade>\r
4328                 <clade>\r
4329                   <taxonomy>\r
4330                     <id provider="uniprot">1054147</id>\r
4331                     <code>DICFS</code>\r
4332                     <scientific_name>Dictyostelium fasciculatum (strain SH3)</scientific_name>\r
4333                     <common_name>Slime mold</common_name>\r
4334                     <rank>strain</rank>\r
4335                   </taxonomy>\r
4336                 </clade>\r
4337               </clade>\r
4338               <clade>\r
4339                 <taxonomy>\r
4340                   <id provider="uniprot">13642</id>\r
4341                   <code>POLPA</code>\r
4342                   <scientific_name>Polysphondylium pallidum</scientific_name>\r
4343                   <common_name>Cellular slime mold</common_name>\r
4344                   <rank>species</rank>\r
4345                   <uri>http://cosmos.bot.kyoto-u.ac.jp/csm/photos2/Pp8s.jpeg</uri>\r
4346                 </taxonomy>\r
4347               </clade>\r
4348             </clade>\r
4349             <clade>\r
4350               <taxonomy>\r
4351                 <id provider="uniprot">5758</id>\r
4352                 <scientific_name>Entamoeba</scientific_name>\r
4353                 <rank>genus</rank>\r
4354               </taxonomy>\r
4355               <clade>\r
4356                 <taxonomy>\r
4357                   <id provider="uniprot">5759</id>\r
4358                   <code>ENTHI</code>\r
4359                   <scientific_name>Entamoeba histolytica</scientific_name>\r
4360                   <rank>species</rank>\r
4361                   <uri>http://www.dpd.cdc.gov/dpdx/images/ParasiteImages/A-F/Amebiasis/E_histo/Ehistdisp_troph_wtmt2.jpg</uri>\r
4362                 </taxonomy>\r
4363               </clade>\r
4364               <clade>\r
4365                 <taxonomy>\r
4366                   <id provider="uniprot">370354</id>\r
4367                   <code>ENTDS</code>\r
4368                   <scientific_name>Entamoeba dispar (strain ATCC PRA-260 / SAW760)</scientific_name>\r
4369                 </taxonomy>\r
4370               </clade>\r
4371             </clade>\r
4372           </clade>\r
4373         </clade>\r
4374         <clade>\r
4375           <name>Bikonta</name>\r
4376           <reference doi="10.1099/ijs.0.63216-0">\r
4377           </reference>\r
4378           <clade>\r
4379             <name>Plants+HC+SAR megagroup</name>\r
4380             <clade>\r
4381               <name>Plants+HC</name>\r
4382               <clade>\r
4383                 <name>Archaeplastida</name>\r
4384                 <clade>\r
4385                   <taxonomy>\r
4386                     <id provider="uniprot">33090</id>\r
4387                     <scientific_name>Viridiplantae</scientific_name>\r
4388                     <common_name>green plants</common_name>\r
4389                     <rank>kingdom</rank>\r
4390                   </taxonomy>\r
4391                   <clade>\r
4392                     <taxonomy>\r
4393                       <id provider="uniprot">3193</id>\r
4394                       <scientific_name>Embryophyta</scientific_name>\r
4395                     </taxonomy>\r
4396                     <clade>\r
4397                       <taxonomy>\r
4398                         <id provider="uniprot">58023</id>\r
4399                         <scientific_name>Tracheophyta</scientific_name>\r
4400                       </taxonomy>\r
4401                       <clade>\r
4402                         <taxonomy>\r
4403                           <id provider="uniprot">58024</id>\r
4404                           <scientific_name>Spermatophyta</scientific_name>\r
4405                         </taxonomy>\r
4406                         <clade>\r
4407                           <taxonomy>\r
4408                             <id provider="uniprot">3398</id>\r
4409                             <scientific_name>Magnoliophyta</scientific_name>\r
4410                           </taxonomy>\r
4411                           <clade>\r
4412                             <name>eudicotyledons &amp; Liliopsida</name>\r
4413                             <clade>\r
4414                               <taxonomy>\r
4415                                 <id provider="uniprot">71240</id>\r
4416                                 <scientific_name>eudicotyledons</scientific_name>\r
4417                               </taxonomy>\r
4418                               <clade>\r
4419                                 <taxonomy>\r
4420                                   <id provider="uniprot">91827</id>\r
4421                                   <scientific_name>core eudicotyledons</scientific_name>\r
4422                                 </taxonomy>\r
4423                                 <clade>\r
4424                                   <taxonomy>\r
4425                                     <id provider="uniprot">71275</id>\r
4426                                     <scientific_name>rosids</scientific_name>\r
4427                                     <rank>subclass</rank>\r
4428                                   </taxonomy>\r
4429                                   <clade>\r
4430                                     <name>fabids &amp; malvids</name>\r
4431                                     <clade>\r
4432                                       <taxonomy>\r
4433                                         <id provider="uniprot">91835</id>\r
4434                                         <scientific_name>fabids</scientific_name>\r
4435                                       </taxonomy>\r
4436                                       <clade>\r
4437                                         <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
4438                                         <clade>\r
4439                                           <name>Rosales &amp; Cucurbitales</name>\r
4440                                           <clade>\r
4441                                             <taxonomy>\r
4442                                               <id provider="uniprot">3745</id>\r
4443                                               <scientific_name>Rosaceae</scientific_name>\r
4444                                               <rank>family</rank>\r
4445                                             </taxonomy>\r
4446                                             <clade>\r
4447                                               <taxonomy>\r
4448                                                 <id provider="uniprot">57918</id>\r
4449                                                 <code>FRAVE</code>\r
4450                                                 <scientific_name>Fragaria vesca</scientific_name>\r
4451                                                 <common_name>Woodland strawberry</common_name>\r
4452                                                 <synonym>Fragaria vesca L.</synonym>\r
4453                                                 <synonym>European strawberry</synonym>\r
4454                                                 <synonym>alpine strawberry</synonym>\r
4455                                                 <rank>species</rank>\r
4456                                                 <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>\r
4457                                                 <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>\r
4458                                               </taxonomy>\r
4459                                             </clade>\r
4460                                             <clade>\r
4461                                               <taxonomy>\r
4462                                                 <id provider="uniprot">3760</id>\r
4463                                                 <code>PRUPE</code>\r
4464                                                 <scientific_name>Prunus persica</scientific_name>\r
4465                                                 <common_name>Peach</common_name>\r
4466                                                 <synonym>Persica vulgaris</synonym>\r
4467                                                 <synonym>Amygdalus persica</synonym>\r
4468                                                 <rank>species</rank>\r
4469                                                 <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
4470                                               </taxonomy>\r
4471                                             </clade>\r
4472                                           </clade>\r
4473                                           <clade>\r
4474                                             <taxonomy>\r
4475                                               <id provider="uniprot">3659</id>\r
4476                                               <code>CUCSA</code>\r
4477                                               <scientific_name>Cucumis sativus</scientific_name>\r
4478                                               <common_name>Cucumber</common_name>\r
4479                                               <rank>species</rank>\r
4480                                             </taxonomy>\r
4481                                           </clade>\r
4482                                         </clade>\r
4483                                         <clade>\r
4484                                           <taxonomy>\r
4485                                             <id provider="uniprot">3814</id>\r
4486                                             <scientific_name>Papilionoideae</scientific_name>\r
4487                                             <rank>subfamily</rank>\r
4488                                           </taxonomy>\r
4489                                           <clade>\r
4490                                             <taxonomy>\r
4491                                               <id provider="uniprot">3847</id>\r
4492                                               <code>SOYBN</code>\r
4493                                               <scientific_name>Glycine max</scientific_name>\r
4494                                               <authority>cv. Wye</authority>\r
4495                                               <common_name>Soybean</common_name>\r
4496                                               <synonym>Glycine hispida</synonym>\r
4497                                               <rank>species</rank>\r
4498                                             </taxonomy>\r
4499                                           </clade>\r
4500                                           <clade>\r
4501                                             <taxonomy>\r
4502                                               <id provider="uniprot">3880</id>\r
4503                                               <code>MEDTR</code>\r
4504                                               <scientific_name>Medicago truncatula</scientific_name>\r
4505                                               <common_name>Barrel medic</common_name>\r
4506                                               <synonym>Medicago tribuloides</synonym>\r
4507                                               <rank>species</rank>\r
4508                                               <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
4509                                             </taxonomy>\r
4510                                           </clade>\r
4511                                         </clade>\r
4512                                       </clade>\r
4513                                       <clade>\r
4514                                         <taxonomy>\r
4515                                           <id provider="uniprot">3646</id>\r
4516                                           <scientific_name>Malpighiales</scientific_name>\r
4517                                           <rank>order</rank>\r
4518                                         </taxonomy>\r
4519                                         <clade>\r
4520                                           <taxonomy>\r
4521                                             <id provider="uniprot">3977</id>\r
4522                                             <scientific_name>Euphorbiaceae</scientific_name>\r
4523                                             <rank>family</rank>\r
4524                                           </taxonomy>\r
4525                                           <clade>\r
4526                                             <taxonomy>\r
4527                                               <id provider="uniprot">3983</id>\r
4528                                               <code>MANES</code>\r
4529                                               <scientific_name>Manihot esculenta</scientific_name>\r
4530                                               <common_name>Tapioca</common_name>\r
4531                                               <synonym>Jatropha manihot</synonym>\r
4532                                               <rank>species</rank>\r
4533                                               <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
4534                                             </taxonomy>\r
4535                                           </clade>\r
4536                                           <clade>\r
4537                                             <taxonomy>\r
4538                                               <id provider="uniprot">3988</id>\r
4539                                               <code>RICCO</code>\r
4540                                               <scientific_name>Ricinus communis</scientific_name>\r
4541                                               <common_name>Castor bean</common_name>\r
4542                                               <synonym>Ricinus sanguineus</synonym>\r
4543                                               <rank>species</rank>\r
4544                                               <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
4545                                             </taxonomy>\r
4546                                           </clade>\r
4547                                         </clade>\r
4548                                         <clade>\r
4549                                           <taxonomy>\r
4550                                             <id provider="uniprot">3694</id>\r
4551                                             <code>POPTR</code>\r
4552                                             <scientific_name>Populus trichocarpa</scientific_name>\r
4553                                             <common_name>Western balsam poplar</common_name>\r
4554                                             <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
4555                                             <rank>species</rank>\r
4556                                           </taxonomy>\r
4557                                         </clade>\r
4558                                       </clade>\r
4559                                     </clade>\r
4560                                     <clade>\r
4561                                       <taxonomy>\r
4562                                         <id provider="uniprot">91836</id>\r
4563                                         <scientific_name>malvids</scientific_name>\r
4564                                       </taxonomy>\r
4565                                       <clade>\r
4566                                         <name>Brassicales &amp; Sapindales</name>\r
4567                                         <clade>\r
4568                                           <taxonomy>\r
4569                                             <id provider="uniprot">3699</id>\r
4570                                             <scientific_name>Brassicales</scientific_name>\r
4571                                             <rank>order</rank>\r
4572                                           </taxonomy>\r
4573                                           <clade>\r
4574                                             <taxonomy>\r
4575                                               <id provider="uniprot">3700</id>\r
4576                                               <scientific_name>Brassicaceae</scientific_name>\r
4577                                               <rank>family</rank>\r
4578                                             </taxonomy>\r
4579                                             <clade>\r
4580                                               <taxonomy>\r
4581                                                 <id provider="uniprot">3701</id>\r
4582                                                 <scientific_name>Arabidopsis</scientific_name>\r
4583                                                 <rank>genus</rank>\r
4584                                               </taxonomy>\r
4585                                               <clade>\r
4586                                                 <taxonomy>\r
4587                                                   <id provider="uniprot">59689</id>\r
4588                                                   <code>ARALY</code>\r
4589                                                   <scientific_name>Arabidopsis lyrata</scientific_name>\r
4590                                                   <common_name>Lyre-leaved rock-cress</common_name>\r
4591                                                   <synonym>Arabis lyrata</synonym>\r
4592                                                   <rank>species</rank>\r
4593                                                 </taxonomy>\r
4594                                               </clade>\r
4595                                               <clade>\r
4596                                                 <taxonomy>\r
4597                                                   <id provider="uniprot">3702</id>\r
4598                                                   <code>ARATH</code>\r
4599                                                   <scientific_name>Arabidopsis thaliana</scientific_name>\r
4600                                                   <common_name>Mouse-ear cress</common_name>\r
4601                                                   <rank>species</rank>\r
4602                                                 </taxonomy>\r
4603                                               </clade>\r
4604                                             </clade>\r
4605                                             <clade>\r
4606                                               <taxonomy>\r
4607                                                 <id provider="uniprot">98038</id>\r
4608                                                 <code>THEHA</code>\r
4609                                                 <scientific_name>Thellungiella halophila</scientific_name>\r
4610                                                 <common_name>Salt cress</common_name>\r
4611                                                 <rank>species</rank>\r
4612                                                 <uri>http://mplant.oxfordjournals.org/content/2/1/3/F1.large.jpg</uri>\r
4613                                               </taxonomy>\r
4614                                             </clade>\r
4615                                           </clade>\r
4616                                           <clade>\r
4617                                             <taxonomy>\r
4618                                               <id provider="uniprot">3649</id>\r
4619                                               <code>CARPA</code>\r
4620                                               <scientific_name>Carica papaya</scientific_name>\r
4621                                               <common_name>Papaya</common_name>\r
4622                                               <rank>species</rank>\r
4623                                               <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
4624                                               <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
4625                                             </taxonomy>\r
4626                                           </clade>\r
4627                                         </clade>\r
4628                                         <clade>\r
4629                                           <taxonomy>\r
4630                                             <id provider="uniprot">2706</id>\r
4631                                             <scientific_name>Citrus</scientific_name>\r
4632                                             <rank>genus</rank>\r
4633                                           </taxonomy>\r
4634                                           <clade>\r
4635                                             <taxonomy>\r
4636                                               <id provider="uniprot">85681</id>\r
4637                                               <code>CCLXX</code>\r
4638                                               <scientific_name>Citrus clementina</scientific_name>\r
4639                                               <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
4640                                               <rank>species</rank>\r
4641                                               <uri>http://www.citrusgenomedb.org/sites/default/files/tripal/tripal_organism/images/Citrus_clementina.jpg</uri>\r
4642                                             </taxonomy>\r
4643                                           </clade>\r
4644                                           <clade>\r
4645                                             <taxonomy>\r
4646                                               <id provider="uniprot">2711</id>\r
4647                                               <code>CITSI</code>\r
4648                                               <scientific_name>Citrus sinensis</scientific_name>\r
4649                                               <common_name>Sweet orange</common_name>\r
4650                                               <synonym>Citrus x sinensis</synonym>\r
4651                                               <synonym>Citrus aurantium var. sinensis</synonym>\r
4652                                               <rank>species</rank>\r
4653                                               <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
4654                                             </taxonomy>\r
4655                                           </clade>\r
4656                                         </clade>\r
4657                                       </clade>\r
4658                                       <clade>\r
4659                                         <taxonomy>\r
4660                                           <id provider="uniprot">71139</id>\r
4661                                           <code>EUCGR</code>\r
4662                                           <scientific_name>Eucalyptus grandis</scientific_name>\r
4663                                           <common_name>Flooded gum</common_name>\r
4664                                           <rank>species</rank>\r
4665                                           <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
4666                                         </taxonomy>\r
4667                                       </clade>\r
4668                                     </clade>\r
4669                                   </clade>\r
4670                                   <clade>\r
4671                                     <taxonomy>\r
4672                                       <id provider="eol">582304</id>\r
4673                                       <code>VITVI</code>\r
4674                                       <scientific_name>Vitis vinifera</scientific_name>\r
4675                                       <common_name>Grape</common_name>\r
4676                                       <rank>species</rank>\r
4677                                     </taxonomy>\r
4678                                   </clade>\r
4679                                 </clade>\r
4680                                 <clade>\r
4681                                   <taxonomy>\r
4682                                     <id provider="uniprot">91888</id>\r
4683                                     <scientific_name>lamiids</scientific_name>\r
4684                                   </taxonomy>\r
4685                                   <clade>\r
4686                                     <taxonomy>\r
4687                                       <id provider="uniprot">4070</id>\r
4688                                       <scientific_name>Solanaceae</scientific_name>\r
4689                                       <rank>family</rank>\r
4690                                     </taxonomy>\r
4691                                     <clade>\r
4692                                       <taxonomy>\r
4693                                         <id provider="uniprot">4107</id>\r
4694                                         <scientific_name>Solanum</scientific_name>\r
4695                                         <rank>genus</rank>\r
4696                                       </taxonomy>\r
4697                                       <clade>\r
4698                                         <taxonomy>\r
4699                                           <id provider="uniprot">49274</id>\r
4700                                           <scientific_name>Lycopersicon</scientific_name>\r
4701                                           <rank>subgenus</rank>\r
4702                                         </taxonomy>\r
4703                                         <clade>\r
4704                                           <taxonomy>\r
4705                                             <id provider="uniprot">4081</id>\r
4706                                             <code>SOLLC</code>\r
4707                                             <scientific_name>Solanum lycopersicum</scientific_name>\r
4708                                             <common_name>Tomato</common_name>\r
4709                                             <synonym>Lycopersicon esculentum</synonym>\r
4710                                             <rank>species</rank>\r
4711                                             <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
4712                                           </taxonomy>\r
4713                                         </clade>\r
4714                                         <clade>\r
4715                                           <taxonomy>\r
4716                                             <id provider="uniprot">4084</id>\r
4717                                             <code>SOLPI</code>\r
4718                                             <scientific_name>Solanum pimpinellifolium</scientific_name>\r
4719                                             <common_name>Currant tomato</common_name>\r
4720                                             <synonym>Lycopersicon pimpinellifolium</synonym>\r
4721                                             <rank>species</rank>\r
4722                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b8/Currant_tomato.jpg</uri>\r
4723                                           </taxonomy>\r
4724                                         </clade>\r
4725                                       </clade>\r
4726                                       <clade>\r
4727                                         <taxonomy>\r
4728                                           <id provider="uniprot">4113</id>\r
4729                                           <code>SOLTU</code>\r
4730                                           <scientific_name>Solanum tuberosum</scientific_name>\r
4731                                           <common_name>Potato</common_name>\r
4732                                           <rank>species</rank>\r
4733                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0508/0344.jpeg</uri>\r
4734                                         </taxonomy>\r
4735                                       </clade>\r
4736                                     </clade>\r
4737                                     <clade>\r
4738                                       <taxonomy>\r
4739                                         <id provider="uniprot">4097</id>\r
4740                                         <code>TOBAC</code>\r
4741                                         <scientific_name>Nicotiana tabacum</scientific_name>\r
4742                                         <common_name>Common tobacco</common_name>\r
4743                                         <rank>species</rank>\r
4744                                         <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
4745                                       </taxonomy>\r
4746                                     </clade>\r
4747                                   </clade>\r
4748                                   <clade>\r
4749                                     <taxonomy>\r
4750                                       <id provider="uniprot">4155</id>\r
4751                                       <code>MIMGU</code>\r
4752                                       <scientific_name>Mimulus guttatus</scientific_name>\r
4753                                       <common_name>Yellow monkey flower</common_name>\r
4754                                       <synonym>Yellow monkey flower</synonym>\r
4755                                       <rank>species</rank>\r
4756                                     </taxonomy>\r
4757                                   </clade>\r
4758                                 </clade>\r
4759                               </clade>\r
4760                               <clade>\r
4761                                 <taxonomy>\r
4762                                   <id provider="uniprot">218851</id>\r
4763                                   <code>AQUCA</code>\r
4764                                   <scientific_name>Aquilegia caerulea</scientific_name>\r
4765                                   <authority>E.James</authority>\r
4766                                   <common_name>Rocky mountain columbine</common_name>\r
4767                                   <synonym>Aquilegia coerulea</synonym>\r
4768                                   <rank>species</rank>\r
4769                                   <uri>http://www.wildflower.org/image_archive/320x240/PCD3618/PCD3618_IMG0033.JPG</uri>\r
4770                                 </taxonomy>\r
4771                               </clade>\r
4772                             </clade>\r
4773                             <clade>\r
4774                               <taxonomy>\r
4775                                 <id provider="uniprot">4447</id>\r
4776                                 <scientific_name>Liliopsida</scientific_name>\r
4777                                 <rank>class</rank>\r
4778                               </taxonomy>\r
4779                               <clade>\r
4780                                 <taxonomy>\r
4781                                   <id provider="uniprot">4479</id>\r
4782                                   <scientific_name>Poaceae</scientific_name>\r
4783                                   <rank>family</rank>\r
4784                                 </taxonomy>\r
4785                                 <clade>\r
4786                                   <taxonomy>\r
4787                                     <id provider="uniprot">147369</id>\r
4788                                     <scientific_name>Panicoideae</scientific_name>\r
4789                                     <rank>subfamily</rank>\r
4790                                   </taxonomy>\r
4791                                   <clade>\r
4792                                     <taxonomy>\r
4793                                       <id provider="uniprot">147429</id>\r
4794                                       <scientific_name>Andropogoneae</scientific_name>\r
4795                                       <rank>tribe</rank>\r
4796                                     </taxonomy>\r
4797                                     <clade>\r
4798                                       <taxonomy>\r
4799                                         <id provider="uniprot">4558</id>\r
4800                                         <code>SORBI</code>\r
4801                                         <scientific_name>Sorghum bicolor</scientific_name>\r
4802                                         <common_name>Sorghum</common_name>\r
4803                                         <synonym>Sorghum vulgare</synonym>\r
4804                                         <rank>species</rank>\r
4805                                       </taxonomy>\r
4806                                     </clade>\r
4807                                     <clade>\r
4808                                       <taxonomy>\r
4809                                         <id provider="uniprot">4577</id>\r
4810                                         <code>MAIZE</code>\r
4811                                         <scientific_name>Zea mays</scientific_name>\r
4812                                         <common_name>Maize</common_name>\r
4813                                         <rank>species</rank>\r
4814                                       </taxonomy>\r
4815                                     </clade>\r
4816                                   </clade>\r
4817                                   <clade>\r
4818                                     <taxonomy>\r
4819                                       <id provider="uniprot">147428</id>\r
4820                                       <scientific_name>Paniceae</scientific_name>\r
4821                                       <rank>tribe</rank>\r
4822                                     </taxonomy>\r
4823                                     <clade>\r
4824                                       <taxonomy>\r
4825                                         <id provider="uniprot">38727</id>\r
4826                                         <code>PANVG</code>\r
4827                                         <scientific_name>Panicum virgatum</scientific_name>\r
4828                                         <common_name>switchgrass</common_name>\r
4829                                         <rank>species</rank>\r
4830                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
4831                                       </taxonomy>\r
4832                                     </clade>\r
4833                                     <clade>\r
4834                                       <taxonomy>\r
4835                                         <id provider="uniprot">4555</id>\r
4836                                         <code>SETIT</code>\r
4837                                         <scientific_name>Setaria italica</scientific_name>\r
4838                                         <common_name>Foxtail millet</common_name>\r
4839                                         <synonym>Panicum italicum</synonym>\r
4840                                         <rank>species</rank>\r
4841                                         <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
4842                                       </taxonomy>\r
4843                                     </clade>\r
4844                                   </clade>\r
4845                                 </clade>\r
4846                                 <clade>\r
4847                                   <taxonomy>\r
4848                                     <id provider="uniprot">359160</id>\r
4849                                     <scientific_name>BEP clade</scientific_name>\r
4850                                   </taxonomy>\r
4851                                   <clade>\r
4852                                     <taxonomy>\r
4853                                       <id provider="uniprot">4527</id>\r
4854                                       <scientific_name>Oryza</scientific_name>\r
4855                                       <rank>genus</rank>\r
4856                                     </taxonomy>\r
4857                                     <clade>\r
4858                                       <taxonomy>\r
4859                                         <id provider="uniprot">4530</id>\r
4860                                         <code>ORYSA</code>\r
4861                                         <scientific_name>Oryza sativa</scientific_name>\r
4862                                         <common_name>Rice</common_name>\r
4863                                         <rank>species</rank>\r
4864                                       </taxonomy>\r
4865                                     </clade>\r
4866                                     <clade>\r
4867                                       <taxonomy>\r
4868                                         <id provider="uniprot">39947</id>\r
4869                                         <code>ORYSJ</code>\r
4870                                         <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
4871                                         <common_name>Rice</common_name>\r
4872                                       </taxonomy>\r
4873                                     </clade>\r
4874                                   </clade>\r
4875                                   <clade>\r
4876                                     <taxonomy>\r
4877                                       <id provider="uniprot">147368</id>\r
4878                                       <scientific_name>Pooideae</scientific_name>\r
4879                                       <rank>subfamily</rank>\r
4880                                     </taxonomy>\r
4881                                     <clade>\r
4882                                       <taxonomy>\r
4883                                         <id provider="uniprot">15368</id>\r
4884                                         <code>BRADI</code>\r
4885                                         <scientific_name>Brachypodium distachyon</scientific_name>\r
4886                                         <common_name>Purple false brome</common_name>\r
4887                                         <synonym>Trachynia distachya</synonym>\r
4888                                         <rank>species</rank>\r
4889                                         <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Brachypodium_distachyon_Bd21-3.jpg</uri>\r
4890                                       </taxonomy>\r
4891                                     </clade>\r
4892                                     <clade>\r
4893                                       <taxonomy>\r
4894                                         <id provider="uniprot">112509</id>\r
4895                                         <code>HORVD</code>\r
4896                                         <scientific_name>Hordeum vulgare var. distichum</scientific_name>\r
4897                                         <common_name>Two-rowed barley</common_name>\r
4898                                         <rank>subspecies</rank>\r
4899                                         <uri>http://www.missouriplants.com/Grasses/Hordeum_vulgare_plant.jpg</uri>\r
4900                                       </taxonomy>\r
4901                                     </clade>\r
4902                                   </clade>\r
4903                                 </clade>\r
4904                               </clade>\r
4905                               <clade>\r
4906                                 <taxonomy>\r
4907                                   <id provider="uniprot">214687</id>\r
4908                                   <code>MUSAM</code>\r
4909                                   <scientific_name>Musa acuminata subsp. malaccensis</scientific_name>\r
4910                                   <authority>(Ridl.) N.W.Simmonds</authority>\r
4911                                   <common_name>Wild banana</common_name>\r
4912                                   <synonym>Musa malaccensis</synonym>\r
4913                                   <rank>subspecies</rank>\r
4914                                   <uri>http://farm5.staticflickr.com/4009/4572831376_07ca3089d1_z.jpg</uri>\r
4915                                 </taxonomy>\r
4916                               </clade>\r
4917                             </clade>\r
4918                           </clade>\r
4919                           <clade>\r
4920                             <taxonomy>\r
4921                               <id provider="uniprot">13333</id>\r
4922                               <code>AMBTC</code>\r
4923                               <scientific_name>Amborella trichopoda</scientific_name>\r
4924                               <rank>species</rank>\r
4925                               <uri>http://www.sciencemag.org/content/342/6165/1456/F1.medium.gif</uri>\r
4926                             </taxonomy>\r
4927                           </clade>\r
4928                         </clade>\r
4929                         <clade>\r
4930                           <taxonomy>\r
4931                             <id provider="uniprot">3329</id>\r
4932                             <code>PICAB</code>\r
4933                             <scientific_name>Picea abies</scientific_name>\r
4934                             <authority>H.Karst</authority>\r
4935                             <common_name>Norway spruce</common_name>\r
4936                             <synonym>Picea excelsa</synonym>\r
4937                             <rank>species</rank>\r
4938                             <uri>http://pharm1.pharmazie.uni-greifswald.de/allgemei/serturn/arzpfl-b/picea_a.jpg</uri>\r
4939                           </taxonomy>\r
4940                         </clade>\r
4941                       </clade>\r
4942                       <clade>\r
4943                         <taxonomy>\r
4944                           <id provider="uniprot">88036</id>\r
4945                           <code>SELML</code>\r
4946                           <scientific_name>Selaginella moellendorffii</scientific_name>\r
4947                           <authority>Hieron</authority>\r
4948                           <common_name>Spikemoss</common_name>\r
4949                           <rank>species</rank>\r
4950                           <uri>http://www.plantsystematics.org/users/robbin/5_22_06/upload121/Selag_moellendorffii3.JPG</uri>\r
4951                         </taxonomy>\r
4952                       </clade>\r
4953                     </clade>\r
4954                     <clade>\r
4955                       <taxonomy>\r
4956                         <id provider="uniprot">145481</id>\r
4957                         <code>PHYPA</code>\r
4958                         <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
4959                         <common_name>Moss</common_name>\r
4960                         <rank>subspecies</rank>\r
4961                         <uri>http://www.aua.gr/plantdevelopment/Photos2/01%20Physcomitrella%20patens.jpg</uri>\r
4962                       </taxonomy>\r
4963                     </clade>\r
4964                   </clade>\r
4965                   <clade>\r
4966                     <taxonomy>\r
4967                       <id provider="uniprot">3041</id>\r
4968                       <scientific_name>Chlorophyta</scientific_name>\r
4969                       <rank>phylum</rank>\r
4970                     </taxonomy>\r
4971                     <clade>\r
4972                       <taxonomy>\r
4973                         <id provider="uniprot">13792</id>\r
4974                         <scientific_name>Mamiellales</scientific_name>\r
4975                         <rank>order</rank>\r
4976                       </taxonomy>\r
4977                       <clade>\r
4978                         <taxonomy>\r
4979                           <id provider="uniprot">70447</id>\r
4980                           <scientific_name>Ostreococcus</scientific_name>\r
4981                           <rank>genus</rank>\r
4982                         </taxonomy>\r
4983                         <clade>\r
4984                           <taxonomy>\r
4985                             <id provider="uniprot">436017</id>\r
4986                             <code>OSTLU</code>\r
4987                             <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
4988                           </taxonomy>\r
4989                         </clade>\r
4990                         <clade>\r
4991                           <taxonomy>\r
4992                             <id provider="uniprot">385169</id>\r
4993                             <code>ORCXX</code>\r
4994                             <scientific_name>Ostreococcus sp. RCC809</scientific_name>\r
4995                             <rank>species</rank>\r
4996                           </taxonomy>\r
4997                         </clade>\r
4998                         <clade>\r
4999                           <taxonomy>\r
5000                             <id provider="uniprot">70448</id>\r
5001                             <code>OSTTA</code>\r
5002                             <scientific_name>Ostreococcus tauri</scientific_name>\r
5003                             <rank>species</rank>\r
5004                             <uri>http://genome.jgi-psf.org/Ost9901_3/Ostta.jpg</uri>\r
5005                           </taxonomy>\r
5006                         </clade>\r
5007                       </clade>\r
5008                       <clade>\r
5009                         <taxonomy>\r
5010                           <id provider="uniprot">38832</id>\r
5011                           <scientific_name>Micromonas</scientific_name>\r
5012                           <rank>genus</rank>\r
5013                         </taxonomy>\r
5014                         <clade>\r
5015                           <taxonomy>\r
5016                             <id provider="uniprot">564608</id>\r
5017                             <code>MICPC</code>\r
5018                             <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
5019                             <common_name>Picoplanktonic green alga</common_name>\r
5020                             <uri>http://www.mansfield.ohio-state.edu/~sabedon/microfla.jpg</uri>\r
5021                           </taxonomy>\r
5022                         </clade>\r
5023                         <clade>\r
5024                           <taxonomy>\r
5025                             <id provider="uniprot">296587</id>\r
5026                             <code>MICSR</code>\r
5027                             <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
5028                             <common_name>Picoplanktonic green alga</common_name>\r
5029                             <synonym>Micromonas sp. RCC299</synonym>\r
5030                             <rank>species</rank>\r
5031                           </taxonomy>\r
5032                         </clade>\r
5033                       </clade>\r
5034                     </clade>\r
5035                     <clade>\r
5036                       <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
5037                       <clade>\r
5038                         <taxonomy>\r
5039                           <id provider="uniprot">75966</id>\r
5040                           <scientific_name>Trebouxiophyceae</scientific_name>\r
5041                           <rank>class</rank>\r
5042                         </taxonomy>\r
5043                         <clade>\r
5044                           <taxonomy>\r
5045                             <id provider="uniprot">763042</id>\r
5046                             <code>ASCXX</code>\r
5047                             <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
5048                             <rank>species</rank>\r
5049                             <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
5050                           </taxonomy>\r
5051                         </clade>\r
5052                         <clade>\r
5053                           <taxonomy>\r
5054                             <id provider="uniprot">554065</id>\r
5055                             <code>CHLVA</code>\r
5056                             <scientific_name>Chlorella variabilis</scientific_name>\r
5057                             <authority>Shihira &amp; Krauss 1965</authority>\r
5058                             <common_name>Green alga</common_name>\r
5059                             <synonym>Chlorella sp. NC64A</synonym>\r
5060                             <synonym>Chlorella sp. Bnd1-ZK</synonym>\r
5061                             <rank>species</rank>\r
5062                             <uri>http://www.sinice.cz/res/image/collection/Chlorella.jpg</uri>\r
5063                           </taxonomy>\r
5064                         </clade>\r
5065                         <clade>\r
5066                           <taxonomy>\r
5067                             <id provider="uniprot">574566</id>\r
5068                             <code>CSUXX</code>\r
5069                             <scientific_name>Coccomyxa subellipsoidea C-169</scientific_name>\r
5070                             <synonym>Chlorella vulgaris C-169</synonym>\r
5071                             <synonym>Coccomyxa sp. C-169</synonym>\r
5072                             <rank>species</rank>\r
5073                             <uri>http://genome.jgi.doe.gov/Coc_C169_1/Chlvu.jpg</uri>\r
5074                           </taxonomy>\r
5075                         </clade>\r
5076                       </clade>\r
5077                       <clade>\r
5078                         <taxonomy>\r
5079                           <id provider="uniprot">3042</id>\r
5080                           <scientific_name>Chlamydomonadales</scientific_name>\r
5081                           <rank>order</rank>\r
5082                         </taxonomy>\r
5083                         <clade>\r
5084                           <taxonomy>\r
5085                             <id provider="uniprot">3055</id>\r
5086                             <code>CHLRE</code>\r
5087                             <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
5088                             <synonym>Chlamydomonas smithii</synonym>\r
5089                             <rank>species</rank>\r
5090                             <uri>http://genome.jgi-psf.org/Chlre3/chlamy_BG.gif</uri>\r
5091                           </taxonomy>\r
5092                         </clade>\r
5093                         <clade>\r
5094                           <taxonomy>\r
5095                             <id provider="uniprot">3067</id>\r
5096                             <code>VOLCA</code>\r
5097                             <scientific_name>Volvox carteri</scientific_name>\r
5098                             <common_name>Green alga</common_name>\r
5099                             <rank>species</rank>\r
5100                             <uri>http://genome.jgi-psf.org/Volca1/Volvox.jpg</uri>\r
5101                           </taxonomy>\r
5102                         </clade>\r
5103                       </clade>\r
5104                     </clade>\r
5105                   </clade>\r
5106                 </clade>\r
5107                 <clade>\r
5108                   <taxonomy>\r
5109                     <id provider="uniprot">2763</id>\r
5110                     <scientific_name>Rhodophyta</scientific_name>\r
5111                     <common_name>red algae</common_name>\r
5112                   </taxonomy>\r
5113                   <clade>\r
5114                     <taxonomy>\r
5115                       <id provider="uniprot">265316</id>\r
5116                       <scientific_name>Cyanidiaceae</scientific_name>\r
5117                       <rank>family</rank>\r
5118                     </taxonomy>\r
5119                     <clade>\r
5120                       <taxonomy>\r
5121                         <id provider="uniprot">45157</id>\r
5122                         <code>CYAME</code>\r
5123                         <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
5124                         <common_name>Red alga</common_name>\r
5125                         <rank>species</rank>\r
5126                         <uri>http://www.shigen.nig.ac.jp/algae_tree/CyanidiophyceaeIMG.jpg</uri>\r
5127                       </taxonomy>\r
5128                     </clade>\r
5129                     <clade>\r
5130                       <taxonomy>\r
5131                         <id provider="uniprot">130081</id>\r
5132                         <code>GALSU</code>\r
5133                         <scientific_name>Galdieria sulphuraria</scientific_name>\r
5134                         <common_name>Red alga</common_name>\r
5135                         <rank>species</rank>\r
5136                         <uri>http://phenomena.nationalgeographic.com/files/2013/03/Alga.jpg</uri>\r
5137                       </taxonomy>\r
5138                     </clade>\r
5139                   </clade>\r
5140                   <clade>\r
5141                     <taxonomy>\r
5142                       <id provider="uniprot">2769</id>\r
5143                       <code>CHOCR</code>\r
5144                       <scientific_name>Chondrus crispus</scientific_name>\r
5145                       <common_name>Carragheen moss</common_name>\r
5146                       <synonym>Irish moss</synonym>\r
5147                       <rank>species</rank>\r
5148                       <uri>http://www.seaweed.ie/_images/MG3_0485.png</uri>\r
5149                     </taxonomy>\r
5150                   </clade>\r
5151                 </clade>\r
5152                 <clade>\r
5153                   <taxonomy>\r
5154                     <id provider="uniprot">38254</id>\r
5155                     <scientific_name>Glaucocystophyceae</scientific_name>\r
5156                     <synonym>Glaucophyta</synonym>\r
5157                     <rank>class</rank>\r
5158                   </taxonomy>\r
5159                   <clade>\r
5160                     <taxonomy>\r
5161                       <id provider="uniprot">2762</id>\r
5162                       <code>CYAPA</code>\r
5163                       <scientific_name>Cyanophora paradoxa</scientific_name>\r
5164                       <rank>species</rank>\r
5165                       <uri>http://www.people.vcu.edu/~rfisher/paradoxa.jpg</uri>\r
5166                     </taxonomy>\r
5167                   </clade>\r
5168                   <clade>\r
5169                     <taxonomy>\r
5170                       <id provider="uniprot">38271</id>\r
5171                       <scientific_name>Glaucocystis nostochinearum</scientific_name>\r
5172                       <rank>species</rank>\r
5173                       <uri>http://protist.i.hosei.ac.jp/pdb/images/Others/Glaucocystis/sp_02.jpg</uri>\r
5174                     </taxonomy>\r
5175                   </clade>\r
5176                 </clade>\r
5177               </clade>\r
5178               <clade>\r
5179                 <name>Hacrobia (Cryptophyta &amp; Haptophyceae &amp; Centroheliozoa)</name>\r
5180                 <clade>\r
5181                   <taxonomy>\r
5182                     <id provider="uniprot">2903</id>\r
5183                     <code>EMIHU</code>\r
5184                     <scientific_name>Emiliania huxleyi</scientific_name>\r
5185                     <synonym>Pontosphaera huxleyi</synonym>\r
5186                     <rank>species</rank>\r
5187                     <uri>http://research.kahaku.go.jp/zoology/kaisei/hp-2/images/hapto.jpg</uri>\r
5188                   </taxonomy>\r
5189                 </clade>\r
5190                 <clade>\r
5191                   <taxonomy>\r
5192                     <id provider="uniprot">55529</id>\r
5193                     <code>GUITH</code>\r
5194                     <scientific_name>Guillardia theta</scientific_name>\r
5195                     <synonym>Cryptomonas phi</synonym>\r
5196                     <rank>species</rank>\r
5197                     <uri>http://genome.jgi.doe.gov/public/Guith1/Gtheta_SEM.jpg</uri>\r
5198                   </taxonomy>\r
5199                   <reference doi="10.1016/j.cub.2007.03.069">\r
5200                     <desc>Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages</desc>\r
5201                   </reference>\r
5202                   <reference>\r
5203                   </reference>\r
5204                 </clade>\r
5205               </clade>\r
5206             </clade>\r
5207             <clade>\r
5208               <name>Stramenopiles &amp; Alveolata &amp; Rhizaria</name>\r
5209               <reference doi="10.1186/1471-2148-10-377">\r
5210                 <desc>Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists</desc>\r
5211               </reference>\r
5212               <reference>\r
5213               </reference>\r
5214               <clade>\r
5215                 <name>Stramenopiles &amp; Alveolata</name>\r
5216                 <clade>\r
5217                   <taxonomy>\r
5218                     <id provider="uniprot">33630</id>\r
5219                     <scientific_name>Alveolata</scientific_name>\r
5220                   </taxonomy>\r
5221                   <reference doi="10.1371/journal.pone.0019933">\r
5222                     <desc>Spliced Leader RNAs, Mitochondrial Gene Frameshifts and Multi-Protein Phylogeny Expand Support for the Genus Perkinsus as a Unique Group of Alveolates</desc>\r
5223                   </reference>\r
5224                   <clade>\r
5225                     <name>Myzozoa</name>\r
5226                     <clade>\r
5227                       <taxonomy>\r
5228                         <id provider="uniprot">5794</id>\r
5229                         <scientific_name>Apicomplexa</scientific_name>\r
5230                         <rank>phylum</rank>\r
5231                       </taxonomy>\r
5232                       <reference doi="10.1101/gr.083386.108">\r
5233                         <desc>The origins of apicomplexan sequence innovation (2009)</desc>\r
5234                       </reference>\r
5235                       <reference>\r
5236                       </reference>\r
5237                       <clade>\r
5238                         <name>Aconoidasida &amp; Coccidia</name>\r
5239                         <clade>\r
5240                           <taxonomy>\r
5241                             <id provider="uniprot">422676</id>\r
5242                             <scientific_name>Aconoidasida</scientific_name>\r
5243                             <rank>class</rank>\r
5244                           </taxonomy>\r
5245                           <clade>\r
5246                             <taxonomy>\r
5247                               <id provider="uniprot">5820</id>\r
5248                               <scientific_name>Plasmodium</scientific_name>\r
5249                               <rank>genus</rank>\r
5250                             </taxonomy>\r
5251                             <clade>\r
5252                               <taxonomy>\r
5253                                 <id provider="uniprot">5825</id>\r
5254                                 <code>PLACH</code>\r
5255                                 <scientific_name>Plasmodium chabaudi</scientific_name>\r
5256                                 <rank>species</rank>\r
5257                               </taxonomy>\r
5258                             </clade>\r
5259                             <clade>\r
5260                               <taxonomy>\r
5261                                 <id provider="uniprot">36329</id>\r
5262                                 <code>PLAF7</code>\r
5263                                 <scientific_name>Plasmodium falciparum (isolate 3D7)</scientific_name>\r
5264                               </taxonomy>\r
5265                             </clade>\r
5266                             <clade>\r
5267                               <taxonomy>\r
5268                                 <id provider="uniprot">73239</id>\r
5269                                 <code>PLAYO</code>\r
5270                                 <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
5271                                 <rank>subspecies</rank>\r
5272                               </taxonomy>\r
5273                             </clade>\r
5274                             <clade>\r
5275                               <taxonomy>\r
5276                                 <id provider="uniprot">126793</id>\r
5277                                 <code>PLAVS</code>\r
5278                                 <scientific_name>Plasmodium vivax (strain Salvador I)</scientific_name>\r
5279                               </taxonomy>\r
5280                             </clade>\r
5281                           </clade>\r
5282                           <clade>\r
5283                             <taxonomy>\r
5284                               <id provider="uniprot">5863</id>\r
5285                               <scientific_name>Piroplasmida</scientific_name>\r
5286                               <common_name>Piroplasmids</common_name>\r
5287                             </taxonomy>\r
5288                             <clade>\r
5289                               <name>Theileria</name>\r
5290                               <taxonomy>\r
5291                                 <id provider="uniprot">5873</id>\r
5292                                 <scientific_name>Theileria</scientific_name>\r
5293                                 <rank>genus</rank>\r
5294                               </taxonomy>\r
5295                               <clade>\r
5296                                 <taxonomy>\r
5297                                   <id provider="uniprot">5874</id>\r
5298                                   <code>THEAN</code>\r
5299                                   <scientific_name>Theileria annulata</scientific_name>\r
5300                                   <rank>species</rank>\r
5301                                 </taxonomy>\r
5302                               </clade>\r
5303                               <clade>\r
5304                                 <taxonomy>\r
5305                                   <id provider="uniprot">5875</id>\r
5306                                   <code>THEPA</code>\r
5307                                   <scientific_name>Theileria parva</scientific_name>\r
5308                                   <common_name>East coast fever infection agent</common_name>\r
5309                                   <rank>species</rank>\r
5310                                 </taxonomy>\r
5311                               </clade>\r
5312                             </clade>\r
5313                             <clade>\r
5314                               <taxonomy>\r
5315                                 <id provider="uniprot">5865</id>\r
5316                                 <code>BABBO</code>\r
5317                                 <scientific_name>Babesia bovis</scientific_name>\r
5318                                 <rank>species</rank>\r
5319                                 <uri>http://www.perulactea.com/wp-content/uploads/2012/03/Babesia_bovis.jpg</uri>\r
5320                               </taxonomy>\r
5321                             </clade>\r
5322                           </clade>\r
5323                         </clade>\r
5324                         <clade>\r
5325                           <taxonomy>\r
5326                             <id provider="uniprot">423054</id>\r
5327                             <scientific_name>Eimeriorina</scientific_name>\r
5328                             <rank>suborder</rank>\r
5329                           </taxonomy>\r
5330                           <reference doi="10.1093/molbev/msn213">\r
5331                             <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
5332                           </reference>\r
5333                           <reference>\r
5334                           </reference>\r
5335                           <clade>\r
5336                             <taxonomy>\r
5337                               <id provider="uniprot">5800</id>\r
5338                               <scientific_name>Eimeria</scientific_name>\r
5339                               <rank>genus</rank>\r
5340                             </taxonomy>\r
5341                             <clade>\r
5342                               <taxonomy>\r
5343                                 <id provider="uniprot">5802</id>\r
5344                                 <code>EIMTE</code>\r
5345                                 <scientific_name>Eimeria tenella</scientific_name>\r
5346                                 <common_name>Coccidian parasite</common_name>\r
5347                                 <rank>species</rank>\r
5348                                 <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
5349                               </taxonomy>\r
5350                             </clade>\r
5351                             <clade>\r
5352                               <taxonomy>\r
5353                                 <id provider="uniprot">5801</id>\r
5354                                 <code>EIMAC</code>\r
5355                                 <scientific_name>Eimeria acervulina</scientific_name>\r
5356                                 <common_name>Coccidian parasite</common_name>\r
5357                                 <rank>species</rank>\r
5358                                 <uri>http://www.k-state.edu/parasitology/625tutorials/FIGacervulina.jpg</uri>\r
5359                               </taxonomy>\r
5360                             </clade>\r
5361                           </clade>\r
5362                           <clade>\r
5363                             <taxonomy>\r
5364                               <id provider="uniprot">5811</id>\r
5365                               <code>TOXGO</code>\r
5366                               <scientific_name>Toxoplasma gondii</scientific_name>\r
5367                               <rank>species</rank>\r
5368                             </taxonomy>\r
5369                           </clade>\r
5370                         </clade>\r
5371                       </clade>\r
5372                       <clade>\r
5373                         <taxonomy>\r
5374                           <id provider="uniprot">5806</id>\r
5375                           <scientific_name>Cryptosporidium</scientific_name>\r
5376                           <rank>genus</rank>\r
5377                         </taxonomy>\r
5378                         <clade>\r
5379                           <taxonomy>\r
5380                             <id provider="uniprot">237895</id>\r
5381                             <code>CRYHO</code>\r
5382                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
5383                             <rank>species</rank>\r
5384                           </taxonomy>\r
5385                         </clade>\r
5386                         <clade>\r
5387                           <taxonomy>\r
5388                             <id provider="uniprot">5807</id>\r
5389                             <code>CRYPV</code>\r
5390                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
5391                             <rank>species</rank>\r
5392                           </taxonomy>\r
5393                         </clade>\r
5394                         <clade>\r
5395                           <taxonomy>\r
5396                             <id provider="uniprot">353152</id>\r
5397                             <code>CRYPI</code>\r
5398                             <scientific_name>Cryptosporidium parvum (strain Iowa II)</scientific_name>\r
5399                           </taxonomy>\r
5400                         </clade>\r
5401                       </clade>\r
5402                     </clade>\r
5403                     <clade>\r
5404                       <name>Dinoflagellates &amp; Perkinsus</name>\r
5405                       <clade>\r
5406                         <taxonomy>\r
5407                           <id provider="uniprot">2864</id>\r
5408                           <scientific_name>Dinophyceae</scientific_name>\r
5409                           <rank>class</rank>\r
5410                         </taxonomy>\r
5411                         <clade>\r
5412                           <taxonomy>\r
5413                             <id provider="uniprot">2866</id>\r
5414                             <code>CRYCO</code>\r
5415                             <scientific_name>Crypthecodinium cohnii</scientific_name>\r
5416                             <common_name>Dinoflagellate</common_name>\r
5417                             <rank>species</rank>\r
5418                             <uri>http://www.lamolina.net/image/DHAcell.jpg</uri>\r
5419                           </taxonomy>\r
5420                         </clade>\r
5421                         <clade>\r
5422                           <taxonomy>\r
5423                             <id provider="uniprot">2923</id>\r
5424                             <code>THOHE</code>\r
5425                             <scientific_name>Thoracosphaera heimii</scientific_name>\r
5426                             <common_name>Dinoflagellate</common_name>\r
5427                             <rank>species</rank>\r
5428                             <uri>http://planktonnet.awi.de/repository/rawdata-PlanktonNet2/viewable/fjouenne_21806a_20080123172436_small.jpg</uri>\r
5429                           </taxonomy>\r
5430                         </clade>\r
5431                       </clade>\r
5432                       <clade>\r
5433                         <taxonomy>\r
5434                           <id provider="uniprot">423536</id>\r
5435                           <code>PERM5</code>\r
5436                           <scientific_name>Perkinsus marinus (strain ATCC 50983 / TXsc)</scientific_name>\r
5437                           <uri>http://www.eurl-mollusc.eu/var/storage/images/medias-ifremer/medias-crlmollusc/images/perkinsus-zoosporangium/633746-1-eng-GB/Perkinsus-zoosporangium.jpg</uri>\r
5438                         </taxonomy>\r
5439                       </clade>\r
5440                     </clade>\r
5441                   </clade>\r
5442                   <clade>\r
5443                     <taxonomy>\r
5444                       <id provider="uniprot">5878</id>\r
5445                       <scientific_name>Ciliophora</scientific_name>\r
5446                     </taxonomy>\r
5447                     <clade>\r
5448                       <taxonomy>\r
5449                         <id provider="uniprot">431838</id>\r
5450                         <scientific_name>Intramacronucleata</scientific_name>\r
5451                         <rank>subphylum</rank>\r
5452                       </taxonomy>\r
5453                       <clade>\r
5454                         <taxonomy>\r
5455                           <id provider="uniprot">6020</id>\r
5456                           <scientific_name>Oligohymenophorea</scientific_name>\r
5457                           <rank>class</rank>\r
5458                         </taxonomy>\r
5459                         <clade>\r
5460                           <taxonomy>\r
5461                             <id provider="uniprot">31277</id>\r
5462                             <scientific_name>Hymenostomatida</scientific_name>\r
5463                             <rank>order</rank>\r
5464                           </taxonomy>\r
5465                           <clade>\r
5466                             <taxonomy>\r
5467                               <id provider="uniprot">857967</id>\r
5468                               <code>ICHMG</code>\r
5469                               <scientific_name>Ichthyophthirius multifiliis (strain G5)</scientific_name>\r
5470                               <common_name>White spot disease agent</common_name>\r
5471                               <synonym>Ich</synonym>\r
5472                               <uri>http://www.vet.cornell.edu/microbiology/FishDisease/aquaticprog/highlights/ich/ICH2.JPG</uri>\r
5473                             </taxonomy>\r
5474                           </clade>\r
5475                           <clade>\r
5476                             <taxonomy>\r
5477                               <id provider="uniprot">312017</id>\r
5478                               <code>TETTS</code>\r
5479                               <scientific_name>Tetrahymena thermophila (strain SB210)</scientific_name>\r
5480                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/08/Tetrahymena_thermophila.png/220px-Tetrahymena_thermophila.png</uri>\r
5481                             </taxonomy>\r
5482                           </clade>\r
5483                         </clade>\r
5484                         <clade>\r
5485                           <taxonomy>\r
5486                             <id provider="uniprot">5888</id>\r
5487                             <code>PARTE</code>\r
5488                             <scientific_name>Paramecium tetraurelia</scientific_name>\r
5489                             <rank>species</rank>\r
5490                             <uri>http://research.plattsburgh.edu/ciliates/images/jdopics208.jpg</uri>\r
5491                           </taxonomy>\r
5492                         </clade>\r
5493                       </clade>\r
5494                       <clade>\r
5495                         <taxonomy>\r
5496                           <id provider="uniprot">1172189</id>\r
5497                           <code>OTRXX</code>\r
5498                           <scientific_name>Oxytricha trifallax</scientific_name>\r
5499                           <authority>Stein, 1859</authority>\r
5500                           <rank>species</rank>\r
5501                           <uri>http://centexnaturalist.com/foldermainmenus/sfprotists/folderprotozoans/oxytricha04.gif</uri>\r
5502                         </taxonomy>\r
5503                       </clade>\r
5504                     </clade>\r
5505                     <clade>\r
5506                       <taxonomy>\r
5507                         <id provider="uniprot">5961</id>\r
5508                         <code>BLEJA</code>\r
5509                         <scientific_name>Blepharisma japonicum</scientific_name>\r
5510                         <rank>species</rank>\r
5511                         <uri>http://upload.wikimedia.org/wikipedia/commons/2/23/Mikrofoto.de-Blepharisma_japonicum_15.jpg</uri>\r
5512                         <uri>http://protist.i.hosei.ac.jp/PDB/PCD0473/C/016.jpg</uri>\r
5513                       </taxonomy>\r
5514                     </clade>\r
5515                   </clade>\r
5516                 </clade>\r
5517                 <clade>\r
5518                   <taxonomy>\r
5519                     <id provider="uniprot">33634</id>\r
5520                     <scientific_name>Stramenopiles</scientific_name>\r
5521                     <authority>Patterson 1989, emend. Adl et al. 2005</authority>\r
5522                     <synonym>Chromophyta</synonym>\r
5523                     <synonym>heterokonts</synonym>\r
5524                     <synonym>Heterokontophyta</synonym>\r
5525                   </taxonomy>\r
5526                   <clade>\r
5527                     <name>Labyrinthulomycetes &amp; Ochrophyta &amp; Oomycetes</name>\r
5528                     <clade>\r
5529                       <name>Ochrophyta &amp; Oomycetes</name>\r
5530                       <reference doi="10.1016/j.protis.2008.11.004">\r
5531                         <desc>Seven Gene Phylogeny of Heterokonts</desc>\r
5532                       </reference>\r
5533                       <reference>\r
5534                       </reference>\r
5535                       <clade>\r
5536                         <taxonomy>\r
5537                           <scientific_name>Ochrophyta</scientific_name>\r
5538                         </taxonomy>\r
5539                         <clade>\r
5540                           <taxonomy>\r
5541                             <id provider="uniprot">2836</id>\r
5542                             <scientific_name>Bacillariophyta</scientific_name>\r
5543                             <common_name>diatoms</common_name>\r
5544                             <rank>class</rank>\r
5545                           </taxonomy>\r
5546                           <clade>\r
5547                             <taxonomy>\r
5548                               <id provider="uniprot">33850</id>\r
5549                               <scientific_name>Bacillariophycidae</scientific_name>\r
5550                             </taxonomy>\r
5551                             <clade>\r
5552                               <taxonomy>\r
5553                                 <id provider="uniprot">186039</id>\r
5554                                 <code>FCYXX</code>\r
5555                                 <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
5556                                 <authority>Krieger</authority>\r
5557                                 <synonym>Nitzschia cylindrus</synonym>\r
5558                                 <rank>species</rank>\r
5559                                 <uri>http://www.awi.de/fileadmin/user_upload/News/Press_Releases/2012/1._Quartal/000_Fragilariposis_Chloroplasten_GDieckmann_w.jpg</uri>\r
5560                               </taxonomy>\r
5561                             </clade>\r
5562                             <clade>\r
5563                               <taxonomy>\r
5564                                 <id provider="uniprot">2850</id>\r
5565                                 <code>PHATR</code>\r
5566                                 <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
5567                                 <authority>Bohlin</authority>\r
5568                                 <rank>species</rank>\r
5569                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/bf/Phaeodactylum_tricornutum.png/637px-Phaeodactylum_tricornutum.png</uri>\r
5570                               </taxonomy>\r
5571                             </clade>\r
5572                           </clade>\r
5573                           <clade>\r
5574                             <taxonomy>\r
5575                               <id provider="uniprot">35127</id>\r
5576                               <scientific_name>Thalassiosira</scientific_name>\r
5577                               <rank>genus</rank>\r
5578                             </taxonomy>\r
5579                             <clade>\r
5580                               <taxonomy>\r
5581                                 <id provider="uniprot">35128</id>\r
5582                                 <code>THAPS</code>\r
5583                                 <scientific_name>Thalassiosira pseudonana</scientific_name>\r
5584                                 <authority>Hasle &amp; Heimdal</authority>\r
5585                                 <common_name>Marine diatom</common_name>\r
5586                                 <synonym>Cyclotella nana</synonym>\r
5587                                 <rank>species</rank>\r
5588                                 <uri>http://www.genomenewsnetwork.org/gnn_images/sequenced_genomes/thalassiosira_pseudonana.jpg</uri>\r
5589                               </taxonomy>\r
5590                             </clade>\r
5591                             <clade>\r
5592                               <taxonomy>\r
5593                                 <id provider="uniprot">159749</id>\r
5594                                 <code>THAOC</code>\r
5595                                 <scientific_name>Thalassiosira oceanica</scientific_name>\r
5596                                 <common_name>Marine diatom</common_name>\r
5597                                 <rank>species</rank>\r
5598                               </taxonomy>\r
5599                             </clade>\r
5600                           </clade>\r
5601                         </clade>\r
5602                         <clade>\r
5603                           <name>Pelagophyceae &amp; Phaeophyceae</name>\r
5604                           <reference doi="10.1128/AEM.06952-11">\r
5605                             <desc>Distribution patterns and phylogeny of marine stramenopiles in the north pacific ocean</desc>\r
5606                           </reference>\r
5607                           <reference>\r
5608                           </reference>\r
5609                           <clade>\r
5610                             <taxonomy>\r
5611                               <id provider="uniprot">44056</id>\r
5612                               <code>AURAN</code>\r
5613                               <scientific_name>Aureococcus anophagefferens</scientific_name>\r
5614                               <authority>Hargraves &amp; Sieburth</authority>\r
5615                               <common_name>Harmful bloom alga</common_name>\r
5616                               <rank>species</rank>\r
5617                               <uri>http://www.dec.ny.gov/images/fish_marine_images/alex1.jpg</uri>\r
5618                             </taxonomy>\r
5619                           </clade>\r
5620                           <clade>\r
5621                             <taxonomy>\r
5622                               <id provider="uniprot">2880</id>\r
5623                               <code>ECTSI</code>\r
5624                               <scientific_name>Ectocarpus siliculosus</scientific_name>\r
5625                               <common_name>Brown alga</common_name>\r
5626                               <rank>species</rank>\r
5627                               <uri>http://www.research.kobe-u.ac.jp/rcis-ku-macc/j.p.folder/photo/KU-1110%20Ectocarpus%20siliculosus%20b%20x20.jpg</uri>\r
5628                             </taxonomy>\r
5629                           </clade>\r
5630                         </clade>\r
5631                       </clade>\r
5632                       <clade>\r
5633                         <taxonomy>\r
5634                           <id provider="uniprot">4762</id>\r
5635                           <scientific_name>Oomycetes</scientific_name>\r
5636                         </taxonomy>\r
5637                         <clade>\r
5638                           <taxonomy>\r
5639                             <id provider="uniprot">4776</id>\r
5640                             <scientific_name>Peronosporales</scientific_name>\r
5641                             <rank>order</rank>\r
5642                           </taxonomy>\r
5643                           <clade>\r
5644                             <taxonomy>\r
5645                               <id provider="uniprot">4783</id>\r
5646                               <scientific_name>Phytophthora</scientific_name>\r
5647                               <rank>genus</rank>\r
5648                             </taxonomy>\r
5649                             <clade>\r
5650                               <taxonomy>\r
5651                                 <id provider="uniprot">4787</id>\r
5652                                 <code>PHYIN</code>\r
5653                                 <scientific_name>Phytophthora infestans</scientific_name>\r
5654                                 <authority>(Mont.) de Bary 1876</authority>\r
5655                                 <common_name>Potato late blight fungus</common_name>\r
5656                                 <rank>species</rank>\r
5657                                 <uri>http://bioweb.uwlax.edu/bio203/s2007/benrud_jaco/index_files/image4901.jpg</uri>\r
5658                               </taxonomy>\r
5659                             </clade>\r
5660                             <clade>\r
5661                               <taxonomy>\r
5662                                 <id provider="uniprot">164328</id>\r
5663                                 <code>PHYRM</code>\r
5664                                 <scientific_name>Phytophthora ramorum</scientific_name>\r
5665                                 <common_name>Sudden oak death agent</common_name>\r
5666                                 <rank>species</rank>\r
5667                                 <uri>http://genome.jgi-psf.org/Phyra1_1/pramorum.jpg</uri>\r
5668                               </taxonomy>\r
5669                             </clade>\r
5670                             <clade>\r
5671                               <taxonomy>\r
5672                                 <id provider="uniprot">67593</id>\r
5673                                 <code>PHYSO</code>\r
5674                                 <scientific_name>Phytophthora sojae</scientific_name>\r
5675                                 <common_name>Soybean stem and root rot agent</common_name>\r
5676                                 <synonym>Phytophthora megasperma f. sp. glycines</synonym>\r
5677                                 <rank>species</rank>\r
5678                                 <uri>http://www.apsnet.org/publications/imageresources/PublishingImages/2003/IW000025b.jpg</uri>\r
5679                               </taxonomy>\r
5680                             </clade>\r
5681                             <clade>\r
5682                               <taxonomy>\r
5683                                 <id provider="uniprot">4785</id>\r
5684                                 <code>PHYCI</code>\r
5685                                 <scientific_name>Phytophthora cinnamomi</scientific_name>\r
5686                                 <common_name>Cinnamon fungus</common_name>\r
5687                                 <rank>species</rank>\r
5688                                 <uri>http://genome.jgi.doe.gov/public/Phyci1/Pcinnamomi_hyphae_and_chlamydospores.jpg</uri>\r
5689                               </taxonomy>\r
5690                             </clade>\r
5691                             <clade>\r
5692                               <taxonomy>\r
5693                                 <id provider="uniprot">4784</id>\r
5694                                 <code>PHYCP</code>\r
5695                                 <scientific_name>Phytophthora capsici</scientific_name>\r
5696                                 <rank>species</rank>\r
5697                                 <uri>http://upload.wikimedia.org/wikipedia/commons/2/24/Phytophthora_capsici_sporangia.jpg</uri>\r
5698                               </taxonomy>\r
5699                             </clade>\r
5700                           </clade>\r
5701                           <clade>\r
5702                             <taxonomy>\r
5703                               <id provider="uniprot">559515</id>\r
5704                               <code>HYAAE</code>\r
5705                               <scientific_name>Hyaloperonospora arabidopsidis (strain Emoy2)</scientific_name>\r
5706                               <common_name>Downy mildew agent</common_name>\r
5707                               <synonym>Peronospora arabidopsidis</synonym>\r
5708                               <uri>http://www.nature.com/nature/journal/v470/n7332/images/470044a-f1.2.jpg</uri>\r
5709                             </taxonomy>\r
5710                           </clade>\r
5711                         </clade>\r
5712                         <clade>\r
5713                           <taxonomy>\r
5714                             <id provider="uniprot">65071</id>\r
5715                             <code>PYTUL</code>\r
5716                             <scientific_name>Pythium ultimum</scientific_name>\r
5717                             <rank>species</rank>\r
5718                             <uri>http://www.plantpath.cornell.edu/labs/enelson/images/Germ_Sporangia(small).jpg</uri>\r
5719                           </taxonomy>\r
5720                         </clade>\r
5721                       </clade>\r
5722                     </clade>\r
5723                     <clade>\r
5724                       <taxonomy>\r
5725                         <id provider="uniprot">33674</id>\r
5726                         <scientific_name>Thraustochytriaceae</scientific_name>\r
5727                         <synonym>Thraustochytriales</synonym>\r
5728                         <rank>family</rank>\r
5729                       </taxonomy>\r
5730                       <clade>\r
5731                         <taxonomy>\r
5732                           <id provider="uniprot">702273</id>\r
5733                           <code>AKEXX</code>\r
5734                           <scientific_name>Aplanochytrium kerguelense PBS07</scientific_name>\r
5735                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/91/Aplanolm.jpg/120px-Aplanolm.jpg</uri>\r
5736                         </taxonomy>\r
5737                       </clade>\r
5738                       <clade>\r
5739                         <taxonomy>\r
5740                           <id provider="uniprot">876976</id>\r
5741                           <code>SAGXX</code>\r
5742                           <scientific_name>Schizochytrium aggregatum ATCC 28209</scientific_name>\r
5743                           <uri>http://genome.jgi-psf.org/public/Schag1/120124-ATCC28209-22.JPG</uri>\r
5744                         </taxonomy>\r
5745                       </clade>\r
5746                       <clade>\r
5747                         <taxonomy>\r
5748                           <id provider="uniprot">87102</id>\r
5749                           <code>ALIXX</code>\r
5750                           <scientific_name>Aurantiochytrium limacinum</scientific_name>\r
5751                           <synonym>Schizochytrium limacinum</synonym>\r
5752                           <rank>species</rank>\r
5753                           <uri>http://upload.wikimedia.org/wikipedia/commons/3/38/Aurantiochytrium_limacinum_SR21.jpg</uri>\r
5754                         </taxonomy>\r
5755                       </clade>\r
5756                     </clade>\r
5757                   </clade>\r
5758                   <clade>\r
5759                     <taxonomy>\r
5760                       <id provider="uniprot">12968</id>\r
5761                       <code>BLAHO</code>\r
5762                       <scientific_name>Blastocystis hominis</scientific_name>\r
5763                       <rank>species</rank>\r
5764                     </taxonomy>\r
5765                   </clade>\r
5766                 </clade>\r
5767               </clade>\r
5768               <clade>\r
5769                 <taxonomy>\r
5770                   <id provider="uniprot">543769</id>\r
5771                   <scientific_name>Rhizaria</scientific_name>\r
5772                 </taxonomy>\r
5773                 <clade>\r
5774                   <taxonomy>\r
5775                     <id provider="uniprot">29178</id>\r
5776                     <scientific_name>Foraminifera</scientific_name>\r
5777                     <common_name>foraminifers</common_name>\r
5778                     <rank>class</rank>\r
5779                   </taxonomy>\r
5780                   <clade>\r
5781                     <taxonomy>\r
5782                       <id provider="uniprot">71427</id>\r
5783                       <scientific_name>Allogromia laticollaris</scientific_name>\r
5784                       <rank>species</rank>\r
5785                       <uri>http://forambarcoding.unige.ch/system/pictures/424/s600/A.laticollaris1.jpg</uri>\r
5786                     </taxonomy>\r
5787                   </clade>\r
5788                   <clade>\r
5789                     <taxonomy>\r
5790                       <id provider="uniprot">46433</id>\r
5791                       <code>RETFI</code>\r
5792                       <scientific_name>Reticulomyxa filosa</scientific_name>\r
5793                       <rank>species</rank>\r
5794                       <uri>http://forambarcoding.unige.ch/system/pictures/269/s600/R.filosa2.jpg</uri>\r
5795                     </taxonomy>\r
5796                   </clade>\r
5797                 </clade>\r
5798                 <clade>\r
5799                   <taxonomy>\r
5800                     <id provider="uniprot">227086</id>\r
5801                     <code>BIGNA</code>\r
5802                     <scientific_name>Bigelowiella natans</scientific_name>\r
5803                     <common_name>Pedinomonas minutissima</common_name>\r
5804                     <synonym>Chlorarachnion sp. (strain CCMP621)</synonym>\r
5805                     <synonym>Pedinomonas minutissima</synonym>\r
5806                     <rank>species</rank>\r
5807                     <uri>http://genome.jgi.doe.gov/Bigna1/Bigna1.jpg</uri>\r
5808                   </taxonomy>\r
5809                 </clade>\r
5810               </clade>\r
5811             </clade>\r
5812           </clade>\r
5813           <clade>\r
5814             <name>Excavata</name>\r
5815             <reference doi="10.1038/nature04546">\r
5816             </reference>\r
5817             <clade>\r
5818               <name>Kinetoplastida &amp; Heterolobosea</name>\r
5819               <clade>\r
5820                 <taxonomy>\r
5821                   <id provider="uniprot">5653</id>\r
5822                   <scientific_name>Kinetoplastida</scientific_name>\r
5823                   <common_name>kinetoplasts</common_name>\r
5824                   <rank>order</rank>\r
5825                 </taxonomy>\r
5826                 <clade>\r
5827                   <taxonomy>\r
5828                     <id provider="uniprot">5654</id>\r
5829                     <scientific_name>Trypanosomatidae</scientific_name>\r
5830                     <rank>family</rank>\r
5831                   </taxonomy>\r
5832                   <clade>\r
5833                     <taxonomy>\r
5834                       <id provider="uniprot">5690</id>\r
5835                       <scientific_name>Trypanosoma</scientific_name>\r
5836                       <rank>genus</rank>\r
5837                     </taxonomy>\r
5838                     <clade>\r
5839                       <taxonomy>\r
5840                         <id provider="uniprot">999953</id>\r
5841                         <code>TRYB2</code>\r
5842                         <scientific_name>Trypanosoma brucei brucei (strain 927/4 GUTat10.1)</scientific_name>\r
5843                         <rank>strain</rank>\r
5844                       </taxonomy>\r
5845                     </clade>\r
5846                     <clade>\r
5847                       <taxonomy>\r
5848                         <id provider="uniprot">5693</id>\r
5849                         <code>TRYCR</code>\r
5850                         <scientific_name>Trypanosoma cruzi</scientific_name>\r
5851                         <rank>species</rank>\r
5852                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/0/0b/Trypanosoma_cruzi_crithidia.jpeg/220px-Trypanosoma_cruzi_crithidia.jpeg</uri>\r
5853                       </taxonomy>\r
5854                     </clade>\r
5855                   </clade>\r
5856                   <clade>\r
5857                     <taxonomy>\r
5858                       <id provider="uniprot">5658</id>\r
5859                       <scientific_name>Leishmania</scientific_name>\r
5860                       <rank>genus</rank>\r
5861                     </taxonomy>\r
5862                     <clade>\r
5863                       <taxonomy>\r
5864                         <id provider="uniprot">5664</id>\r
5865                         <code>LEIMA</code>\r
5866                         <scientific_name>Leishmania major</scientific_name>\r
5867                         <rank>species</rank>\r
5868                       </taxonomy>\r
5869                     </clade>\r
5870                     <clade>\r
5871                       <taxonomy>\r
5872                         <id provider="uniprot">5671</id>\r
5873                         <code>LEIIN</code>\r
5874                         <scientific_name>Leishmania infantum</scientific_name>\r
5875                         <rank>species</rank>\r
5876                       </taxonomy>\r
5877                     </clade>\r
5878                     <clade>\r
5879                       <taxonomy>\r
5880                         <id provider="uniprot">5660</id>\r
5881                         <code>LEIBR</code>\r
5882                         <scientific_name>Leishmania braziliensis</scientific_name>\r
5883                         <rank>species</rank>\r
5884                       </taxonomy>\r
5885                     </clade>\r
5886                   </clade>\r
5887                 </clade>\r
5888                 <clade>\r
5889                   <taxonomy>\r
5890                     <id provider="uniprot">75058</id>\r
5891                     <code>BODSA</code>\r
5892                     <scientific_name>Bodo saltans</scientific_name>\r
5893                     <common_name>Flagellated protozoan</common_name>\r
5894                     <rank>species</rank>\r
5895                     <uri>http://protist.i.hosei.ac.jp/pdb/images/Mastigophora/Bodo/sp_1f.jpg</uri>\r
5896                   </taxonomy>\r
5897                 </clade>\r
5898               </clade>\r
5899               <clade>\r
5900                 <taxonomy>\r
5901                   <id provider="uniprot">5762</id>\r
5902                   <code>NAEGR</code>\r
5903                   <scientific_name>Naegleria gruberi</scientific_name>\r
5904                   <common_name>Amoeba</common_name>\r
5905                   <rank>species</rank>\r
5906                   <uri>http://media.npr.org/assets/news/2010/03/05/amoeba_custom-a24a7e20b8d9f1b681cf6a25d0d046d84f238349-s3.jpg</uri>\r
5907                 </taxonomy>\r
5908               </clade>\r
5909             </clade>\r
5910             <clade>\r
5911               <name>Metamonada</name>\r
5912               <clade>\r
5913                 <taxonomy>\r
5914                   <id provider="uniprot">184922</id>\r
5915                   <code>GIAIC</code>\r
5916                   <scientific_name>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</scientific_name>\r
5917                   <synonym>Giardia intestinalis (strain ATCC 50803 / WB clone C6)</synonym>\r
5918                   <synonym>Giardia lamblia</synonym>\r
5919                   <rank>species</rank>\r
5920                 </taxonomy>\r
5921               </clade>\r
5922               <clade>\r
5923                 <taxonomy>\r
5924                   <id provider="uniprot">5722</id>\r
5925                   <code>TRIVA</code>\r
5926                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
5927                   <rank>species</rank>\r
5928                 </taxonomy>\r
5929               </clade>\r
5930             </clade>\r
5931           </clade>\r
5932           <clade>\r
5933             <taxonomy>\r
5934               <id provider="uniprot">554296</id>\r
5935               <scientific_name>Apusozoa</scientific_name>\r
5936             </taxonomy>\r
5937             <reference doi="10.1016/j.protis.2008.06.002">\r
5938               <desc>Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov</desc>\r
5939             </reference>\r
5940             <clade>\r
5941               <taxonomy>\r
5942                 <id provider="uniprot">554453</id>\r
5943                 <scientific_name>Planomonas micra</scientific_name>\r
5944                 <authority>(Cavalier-Smith, 2008) Heiss, Walker &amp; Simpson 2010</authority>\r
5945                 <synonym>Apusomonadidae sp. micra</synonym>\r
5946                 <rank>species</rank>\r
5947               </taxonomy>\r
5948             </clade>\r
5949             <clade>\r
5950               <taxonomy>\r
5951                 <id provider="uniprot">529818</id>\r
5952                 <code>TTRXX</code>\r
5953                 <scientific_name>Thecamonas trahens</scientific_name>\r
5954                 <authority>Larsen &amp; Patterson 1990</authority>\r
5955                 <synonym>Amastigomonas trahens</synonym>\r
5956                 <rank>species</rank>\r
5957                 <uri>http://bioinformatica.upf.edu/2011/projectes11/Cx/images/pro_t_tra.jpg</uri>\r
5958               </taxonomy>\r
5959             </clade>\r
5960           </clade>\r
5961         </clade>\r
5962       </clade>\r
5963       <clade>\r
5964         <taxonomy>\r
5965           <id provider="uniprot">2157</id>\r
5966           <scientific_name>Archaea</scientific_name>\r
5967           <rank>superkingdom</rank>\r
5968         </taxonomy>\r
5969         <clade>\r
5970           <name>a_62</name>\r
5971           <clade>\r
5972             <name>a_56</name>\r
5973             <clade>\r
5974               <taxonomy>\r
5975                 <id provider="uniprot">28890</id>\r
5976                 <scientific_name>Euryarchaeota</scientific_name>\r
5977                 <rank>phylum</rank>\r
5978               </taxonomy>\r
5979               <clade>\r
5980                 <name>a_44</name>\r
5981                 <clade>\r
5982                   <name>a_28</name>\r
5983                   <clade>\r
5984                     <name>a_26</name>\r
5985                     <clade>\r
5986                       <taxonomy>\r
5987                         <id provider="uniprot">224756</id>\r
5988                         <scientific_name>Methanomicrobia</scientific_name>\r
5989                         <rank>class</rank>\r
5990                       </taxonomy>\r
5991                       <clade>\r
5992                         <name>a_14</name>\r
5993                         <clade>\r
5994                           <name>a_12</name>\r
5995                           <clade>\r
5996                             <taxonomy>\r
5997                               <id provider="uniprot">2206</id>\r
5998                               <scientific_name>Methanosarcinaceae</scientific_name>\r
5999                               <rank>family</rank>\r
6000                             </taxonomy>\r
6001                             <clade>\r
6002                               <taxonomy>\r
6003                                 <id provider="uniprot">2207</id>\r
6004                                 <scientific_name>Methanosarcina</scientific_name>\r
6005                                 <rank>genus</rank>\r
6006                               </taxonomy>\r
6007                               <clade>\r
6008                                 <name>a_2</name>\r
6009                                 <clade>\r
6010                                   <taxonomy>\r
6011                                     <id provider="uniprot">2214</id>\r
6012                                     <code>METAC</code>\r
6013                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
6014                                     <rank>species</rank>\r
6015                                   </taxonomy>\r
6016                                 </clade>\r
6017                                 <clade>\r
6018                                   <taxonomy>\r
6019                                     <id provider="uniprot">269797</id>\r
6020                                     <code>METBF</code>\r
6021                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
6022                                   </taxonomy>\r
6023                                 </clade>\r
6024                               </clade>\r
6025                               <clade>\r
6026                                 <taxonomy>\r
6027                                   <id provider="uniprot">2209</id>\r
6028                                   <code>METMA</code>\r
6029                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
6030                                   <synonym>Methanosarcina frisia</synonym>\r
6031                                   <rank>species</rank>\r
6032                                 </taxonomy>\r
6033                               </clade>\r
6034                             </clade>\r
6035                             <clade>\r
6036                               <taxonomy>\r
6037                                 <id provider="uniprot">259564</id>\r
6038                                 <code>METBU</code>\r
6039                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
6040                               </taxonomy>\r
6041                             </clade>\r
6042                           </clade>\r
6043                           <clade>\r
6044                             <name>a_11</name>\r
6045                             <taxonomy>\r
6046                               <id provider="uniprot">2191</id>\r
6047                               <scientific_name>Methanomicrobiales</scientific_name>\r
6048                               <rank>order</rank>\r
6049                             </taxonomy>\r
6050                             <clade>\r
6051                               <name>a_9</name>\r
6052                               <clade>\r
6053                                 <taxonomy>\r
6054                                   <id provider="uniprot">456442</id>\r
6055                                   <code>METB6</code>\r
6056                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
6057                                 </taxonomy>\r
6058                               </clade>\r
6059                               <clade>\r
6060                                 <taxonomy>\r
6061                                   <id provider="uniprot">2203</id>\r
6062                                   <code>METHU</code>\r
6063                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
6064                                   <rank>species</rank>\r
6065                                 </taxonomy>\r
6066                               </clade>\r
6067                             </clade>\r
6068                             <clade>\r
6069                               <taxonomy>\r
6070                                 <id provider="uniprot">368407</id>\r
6071                                 <code>METMJ</code>\r
6072                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
6073                               </taxonomy>\r
6074                             </clade>\r
6075                           </clade>\r
6076                         </clade>\r
6077                         <clade>\r
6078                           <taxonomy>\r
6079                             <id provider="uniprot">410358</id>\r
6080                             <code>METLZ</code>\r
6081                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
6082                           </taxonomy>\r
6083                         </clade>\r
6084                       </clade>\r
6085                       <clade>\r
6086                         <taxonomy>\r
6087                           <id provider="uniprot">349307</id>\r
6088                           <code>METTP</code>\r
6089                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
6090                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
6091                         </taxonomy>\r
6092                       </clade>\r
6093                     </clade>\r
6094                     <clade>\r
6095                       <taxonomy>\r
6096                         <id provider="uniprot">2236</id>\r
6097                         <scientific_name>Halobacteriaceae</scientific_name>\r
6098                         <rank>family</rank>\r
6099                       </taxonomy>\r
6100                       <clade>\r
6101                         <name>a_23</name>\r
6102                         <clade>\r
6103                           <name>a_19</name>\r
6104                           <clade>\r
6105                             <taxonomy>\r
6106                               <id provider="uniprot">2238</id>\r
6107                               <code>HALMA</code>\r
6108                               <scientific_name>Haloarcula marismortui</scientific_name>\r
6109                               <synonym>Halobacterium marismortui</synonym>\r
6110                               <rank>species</rank>\r
6111                             </taxonomy>\r
6112                           </clade>\r
6113                           <clade>\r
6114                             <taxonomy>\r
6115                               <id provider="uniprot">2257</id>\r
6116                               <code>NATPH</code>\r
6117                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
6118                               <common_name>Natronobacterium pharaonis</common_name>\r
6119                               <rank>species</rank>\r
6120                             </taxonomy>\r
6121                           </clade>\r
6122                         </clade>\r
6123                         <clade>\r
6124                           <name>a_22</name>\r
6125                           <taxonomy>\r
6126                             <id provider="uniprot">2239</id>\r
6127                             <scientific_name>Halobacterium</scientific_name>\r
6128                             <rank>genus</rank>\r
6129                           </taxonomy>\r
6130                           <clade>\r
6131                             <taxonomy>\r
6132                               <id provider="uniprot">478009</id>\r
6133                               <code>HALS3</code>\r
6134                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
6135                             </taxonomy>\r
6136                           </clade>\r
6137                           <clade>\r
6138                             <taxonomy>\r
6139                               <id provider="uniprot">2243</id>\r
6140                               <code>HALSP</code>\r
6141                               <scientific_name>Halobacterium sp.</scientific_name>\r
6142                               <rank>species</rank>\r
6143                             </taxonomy>\r
6144                           </clade>\r
6145                         </clade>\r
6146                       </clade>\r
6147                       <clade>\r
6148                         <taxonomy>\r
6149                           <id provider="uniprot">362976</id>\r
6150                           <code>HALWD</code>\r
6151                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
6152                         </taxonomy>\r
6153                       </clade>\r
6154                     </clade>\r
6155                   </clade>\r
6156                   <clade>\r
6157                     <taxonomy>\r
6158                       <id provider="uniprot">224325</id>\r
6159                       <code>ARCFU</code>\r
6160                       <scientific_name>Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)</scientific_name>\r
6161                       <rank>strain</rank>\r
6162                     </taxonomy>\r
6163                   </clade>\r
6164                 </clade>\r
6165                 <clade>\r
6166                   <name>a_43</name>\r
6167                   <clade>\r
6168                     <name>a_41</name>\r
6169                     <clade>\r
6170                       <taxonomy>\r
6171                         <id provider="uniprot">2182</id>\r
6172                         <scientific_name>Methanococcales</scientific_name>\r
6173                         <rank>order</rank>\r
6174                       </taxonomy>\r
6175                       <clade>\r
6176                         <name>a_31</name>\r
6177                         <clade>\r
6178                           <taxonomy>\r
6179                             <id provider="uniprot">2190</id>\r
6180                             <code>METJA</code>\r
6181                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
6182                             <synonym>Methanococcus jannaschii</synonym>\r
6183                             <rank>species</rank>\r
6184                           </taxonomy>\r
6185                         </clade>\r
6186                         <clade>\r
6187                           <taxonomy>\r
6188                             <id provider="uniprot">419665</id>\r
6189                             <code>META3</code>\r
6190                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
6191                           </taxonomy>\r
6192                         </clade>\r
6193                       </clade>\r
6194                       <clade>\r
6195                         <name>a_34</name>\r
6196                         <taxonomy>\r
6197                           <id provider="uniprot">2184</id>\r
6198                           <scientific_name>Methanococcus</scientific_name>\r
6199                           <rank>genus</rank>\r
6200                         </taxonomy>\r
6201                         <clade>\r
6202                           <taxonomy>\r
6203                             <id provider="uniprot">39152</id>\r
6204                             <code>METMP</code>\r
6205                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
6206                             <synonym>Methanococcus deltae</synonym>\r
6207                             <rank>species</rank>\r
6208                           </taxonomy>\r
6209                         </clade>\r
6210                         <clade>\r
6211                           <taxonomy>\r
6212                             <id provider="uniprot">406327</id>\r
6213                             <code>METVS</code>\r
6214                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
6215                           </taxonomy>\r
6216                         </clade>\r
6217                       </clade>\r
6218                     </clade>\r
6219                     <clade>\r
6220                       <name>a_40</name>\r
6221                       <taxonomy>\r
6222                         <id provider="uniprot">2159</id>\r
6223                         <scientific_name>Methanobacteriaceae</scientific_name>\r
6224                         <rank>family</rank>\r
6225                       </taxonomy>\r
6226                       <clade>\r
6227                         <name>a_38</name>\r
6228                         <clade>\r
6229                           <taxonomy>\r
6230                             <id provider="uniprot">420247</id>\r
6231                             <code>METS3</code>\r
6232                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
6233                           </taxonomy>\r
6234                         </clade>\r
6235                         <clade>\r
6236                           <taxonomy>\r
6237                             <id provider="uniprot">339860</id>\r
6238                             <code>METST</code>\r
6239                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
6240                           </taxonomy>\r
6241                         </clade>\r
6242                       </clade>\r
6243                       <clade>\r
6244                         <taxonomy>\r
6245                           <id provider="uniprot">187420</id>\r
6246                           <code>METTH</code>\r
6247                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
6248                           <synonym>Methanobacterium thermoautotrophicum</synonym>\r
6249                         </taxonomy>\r
6250                       </clade>\r
6251                     </clade>\r
6252                   </clade>\r
6253                   <clade>\r
6254                     <taxonomy>\r
6255                       <id provider="uniprot">2320</id>\r
6256                       <code>METKA</code>\r
6257                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
6258                       <rank>species</rank>\r
6259                     </taxonomy>\r
6260                   </clade>\r
6261                 </clade>\r
6262               </clade>\r
6263               <clade>\r
6264                 <taxonomy>\r
6265                   <id provider="uniprot">2259</id>\r
6266                   <scientific_name>Thermococcaceae</scientific_name>\r
6267                   <rank>family</rank>\r
6268                 </taxonomy>\r
6269                 <clade>\r
6270                   <name>PYRFU &amp; THEKO &amp; PYRAB &amp; PYRHO</name>\r
6271                   <clade>\r
6272                     <name>PYRFU &amp; THEKO</name>\r
6273                     <clade>\r
6274                       <taxonomy>\r
6275                         <id provider="uniprot">2261</id>\r
6276                         <code>PYRFU</code>\r
6277                         <scientific_name>Pyrococcus furiosus</scientific_name>\r
6278                         <rank>species</rank>\r
6279                       </taxonomy>\r
6280                     </clade>\r
6281                     <clade>\r
6282                       <taxonomy>\r
6283                         <id provider="uniprot">69014</id>\r
6284                         <code>THEKO</code>\r
6285                         <scientific_name>Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
6286                         <synonym>Pyrococcus kodakaraensis (strain KOD1)</synonym>\r
6287                       </taxonomy>\r
6288                     </clade>\r
6289                   </clade>\r
6290                   <clade>\r
6291                     <taxonomy>\r
6292                       <id provider="uniprot">2260</id>\r
6293                       <scientific_name>Pyrococcus</scientific_name>\r
6294                       <rank>genus</rank>\r
6295                     </taxonomy>\r
6296                     <clade>\r
6297                       <taxonomy>\r
6298                         <id provider="uniprot">29292</id>\r
6299                         <code>PYRAB</code>\r
6300                         <scientific_name>Pyrococcus abyssi</scientific_name>\r
6301                         <rank>species</rank>\r
6302                       </taxonomy>\r
6303                     </clade>\r
6304                     <clade>\r
6305                       <taxonomy>\r
6306                         <id provider="uniprot">53953</id>\r
6307                         <code>PYRHO</code>\r
6308                         <scientific_name>Pyrococcus horikoshii</scientific_name>\r
6309                         <rank>species</rank>\r
6310                       </taxonomy>\r
6311                     </clade>\r
6312                   </clade>\r
6313                 </clade>\r
6314                 <clade>\r
6315                   <taxonomy>\r
6316                     <id provider="uniprot">523850</id>\r
6317                     <code>THEON</code>\r
6318                     <scientific_name>Thermococcus onnurineus (strain NA1)</scientific_name>\r
6319                   </taxonomy>\r
6320                 </clade>\r
6321               </clade>\r
6322             </clade>\r
6323             <clade>\r
6324               <name>a_55</name>\r
6325               <clade>\r
6326                 <taxonomy>\r
6327                   <id provider="uniprot">228908</id>\r
6328                   <code>NANEQ</code>\r
6329                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
6330                 </taxonomy>\r
6331               </clade>\r
6332               <clade>\r
6333                 <taxonomy>\r
6334                   <id provider="uniprot">436308</id>\r
6335                   <code>NITMS</code>\r
6336                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
6337                 </taxonomy>\r
6338               </clade>\r
6339             </clade>\r
6340           </clade>\r
6341           <clade>\r
6342             <taxonomy>\r
6343               <id provider="uniprot">2301</id>\r
6344               <scientific_name>Thermoplasmatales</scientific_name>\r
6345               <rank>order</rank>\r
6346             </taxonomy>\r
6347             <clade>\r
6348               <name>a_59</name>\r
6349               <taxonomy>\r
6350                 <id provider="uniprot">2302</id>\r
6351                 <scientific_name>Thermoplasma</scientific_name>\r
6352                 <rank>genus</rank>\r
6353               </taxonomy>\r
6354               <clade>\r
6355                 <taxonomy>\r
6356                   <id provider="uniprot">273075</id>\r
6357                   <code>THEAC</code>\r
6358                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
6359                 </taxonomy>\r
6360               </clade>\r
6361               <clade>\r
6362                 <taxonomy>\r
6363                   <id provider="uniprot">273116</id>\r
6364                   <code>THEVO</code>\r
6365                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
6366                 </taxonomy>\r
6367               </clade>\r
6368             </clade>\r
6369             <clade>\r
6370               <taxonomy>\r
6371                 <id provider="uniprot">263820</id>\r
6372                 <code>PICTO</code>\r
6373                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
6374               </taxonomy>\r
6375             </clade>\r
6376           </clade>\r
6377         </clade>\r
6378         <clade>\r
6379           <name>a_93</name>\r
6380           <clade>\r
6381             <taxonomy>\r
6382               <id provider="uniprot">183924</id>\r
6383               <scientific_name>Thermoprotei</scientific_name>\r
6384               <rank>class</rank>\r
6385             </taxonomy>\r
6386             <clade>\r
6387               <name>a_83</name>\r
6388               <clade>\r
6389                 <name>a_81</name>\r
6390                 <clade>\r
6391                   <taxonomy>\r
6392                     <id provider="uniprot">2267</id>\r
6393                     <scientific_name>Thermoproteaceae</scientific_name>\r
6394                     <rank>family</rank>\r
6395                   </taxonomy>\r
6396                   <clade>\r
6397                     <name>a_71</name>\r
6398                     <clade>\r
6399                       <name>a_67</name>\r
6400                       <taxonomy>\r
6401                         <id provider="uniprot">2276</id>\r
6402                         <scientific_name>Pyrobaculum</scientific_name>\r
6403                         <rank>genus</rank>\r
6404                       </taxonomy>\r
6405                       <clade>\r
6406                         <name>a_65</name>\r
6407                         <clade>\r
6408                           <taxonomy>\r
6409                             <id provider="uniprot">340102</id>\r
6410                             <code>PYRAR</code>\r
6411                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
6412                           </taxonomy>\r
6413                         </clade>\r
6414                         <clade>\r
6415                           <taxonomy>\r
6416                             <id provider="uniprot">410359</id>\r
6417                             <code>PYRCJ</code>\r
6418                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
6419                           </taxonomy>\r
6420                         </clade>\r
6421                       </clade>\r
6422                       <clade>\r
6423                         <taxonomy>\r
6424                           <id provider="uniprot">13773</id>\r
6425                           <code>PYRAE</code>\r
6426                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
6427                           <rank>species</rank>\r
6428                         </taxonomy>\r
6429                       </clade>\r
6430                     </clade>\r
6431                     <clade>\r
6432                       <name>a_70</name>\r
6433                       <clade>\r
6434                         <taxonomy>\r
6435                           <id provider="uniprot">384616</id>\r
6436                           <code>PYRIL</code>\r
6437                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
6438                         </taxonomy>\r
6439                       </clade>\r
6440                       <clade>\r
6441                         <taxonomy>\r
6442                           <id provider="uniprot">444157</id>\r
6443                           <code>THENV</code>\r
6444                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
6445                           <synonym>Thermoproteus neutrophilus</synonym>\r
6446                         </taxonomy>\r
6447                       </clade>\r
6448                     </clade>\r
6449                   </clade>\r
6450                   <clade>\r
6451                     <taxonomy>\r
6452                       <id provider="uniprot">397948</id>\r
6453                       <code>CALMQ</code>\r
6454                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
6455                     </taxonomy>\r
6456                   </clade>\r
6457                 </clade>\r
6458                 <clade>\r
6459                   <name>a_80</name>\r
6460                   <taxonomy>\r
6461                     <id provider="uniprot">118883</id>\r
6462                     <scientific_name>Sulfolobaceae</scientific_name>\r
6463                     <rank>family</rank>\r
6464                   </taxonomy>\r
6465                   <clade>\r
6466                     <name>a_78</name>\r
6467                     <taxonomy>\r
6468                       <id provider="uniprot">2284</id>\r
6469                       <scientific_name>Sulfolobus</scientific_name>\r
6470                       <rank>genus</rank>\r
6471                     </taxonomy>\r
6472                     <clade>\r
6473                       <name>a_76</name>\r
6474                       <clade>\r
6475                         <taxonomy>\r
6476                           <id provider="uniprot">2285</id>\r
6477                           <code>SULAC</code>\r
6478                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
6479                           <rank>species</rank>\r
6480                         </taxonomy>\r
6481                       </clade>\r
6482                       <clade>\r
6483                         <taxonomy>\r
6484                           <id provider="uniprot">273063</id>\r
6485                           <code>SULTO</code>\r
6486                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
6487                         </taxonomy>\r
6488                       </clade>\r
6489                     </clade>\r
6490                     <clade>\r
6491                       <taxonomy>\r
6492                         <id provider="uniprot">2287</id>\r
6493                         <code>SULSO</code>\r
6494                         <scientific_name>Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)</scientific_name>\r
6495                         <synonym>Sulfolobus solfataricus P2</synonym>\r
6496                         <rank>strain</rank>\r
6497                       </taxonomy>\r
6498                     </clade>\r
6499                   </clade>\r
6500                   <clade>\r
6501                     <taxonomy>\r
6502                       <id provider="uniprot">399549</id>\r
6503                       <code>METS5</code>\r
6504                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
6505                     </taxonomy>\r
6506                   </clade>\r
6507                 </clade>\r
6508               </clade>\r
6509               <clade>\r
6510                 <taxonomy>\r
6511                   <id provider="uniprot">56636</id>\r
6512                   <code>AERPE</code>\r
6513                   <scientific_name>Aeropyrum pernix</scientific_name>\r
6514                   <rank>species</rank>\r
6515                 </taxonomy>\r
6516               </clade>\r
6517             </clade>\r
6518             <clade>\r
6519               <name>a_90</name>\r
6520               <clade>\r
6521                 <name>a_88</name>\r
6522                 <clade>\r
6523                   <name>a_86</name>\r
6524                   <clade>\r
6525                     <taxonomy>\r
6526                       <id provider="uniprot">399550</id>\r
6527                       <code>STAMF</code>\r
6528                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
6529                     </taxonomy>\r
6530                   </clade>\r
6531                   <clade>\r
6532                     <taxonomy>\r
6533                       <id provider="uniprot">368408</id>\r
6534                       <code>THEPD</code>\r
6535                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
6536                     </taxonomy>\r
6537                   </clade>\r
6538                 </clade>\r
6539                 <clade>\r
6540                   <taxonomy>\r
6541                     <id provider="uniprot">415426</id>\r
6542                     <code>HYPBU</code>\r
6543                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
6544                   </taxonomy>\r
6545                 </clade>\r
6546               </clade>\r
6547               <clade>\r
6548                 <taxonomy>\r
6549                   <id provider="uniprot">453591</id>\r
6550                   <code>IGNH4</code>\r
6551                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
6552                 </taxonomy>\r
6553               </clade>\r
6554             </clade>\r
6555           </clade>\r
6556           <clade>\r
6557             <taxonomy>\r
6558               <id provider="uniprot">374847</id>\r
6559               <code>KORCO</code>\r
6560               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
6561             </taxonomy>\r
6562           </clade>\r
6563         </clade>\r
6564       </clade>\r
6565     </clade>\r
6566     <clade>\r
6567       <taxonomy>\r
6568         <id provider="uniprot">2</id>\r
6569         <scientific_name>Bacteria</scientific_name>\r
6570         <rank>superkingdom</rank>\r
6571       </taxonomy>\r
6572       <clade>\r
6573         <name>b_278</name>\r
6574         <clade>\r
6575           <name>b_268</name>\r
6576           <clade>\r
6577             <name>b_226</name>\r
6578             <clade>\r
6579               <name>b_200</name>\r
6580               <clade>\r
6581                 <name>b_194</name>\r
6582                 <clade>\r
6583                   <name>b_104</name>\r
6584                   <clade>\r
6585                     <name>b_80</name>\r
6586                     <clade>\r
6587                       <taxonomy>\r
6588                         <id provider="uniprot">1224</id>\r
6589                         <scientific_name>Proteobacteria</scientific_name>\r
6590                         <rank>phylum</rank>\r
6591                       </taxonomy>\r
6592                       <clade>\r
6593                         <name>b_52</name>\r
6594                         <clade>\r
6595                           <name>b_44</name>\r
6596                           <clade>\r
6597                             <name>b_30</name>\r
6598                             <clade>\r
6599                               <name>b_24</name>\r
6600                               <taxonomy>\r
6601                                 <id provider="uniprot">1236</id>\r
6602                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
6603                                 <rank>class</rank>\r
6604                               </taxonomy>\r
6605                               <clade>\r
6606                                 <name>b_16</name>\r
6607                                 <clade>\r
6608                                   <taxonomy>\r
6609                                     <id provider="uniprot">543</id>\r
6610                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
6611                                     <rank>family</rank>\r
6612                                   </taxonomy>\r
6613                                   <clade>\r
6614                                     <name>b_8</name>\r
6615                                     <clade>\r
6616                                       <name>b_6</name>\r
6617                                       <clade>\r
6618                                         <name>b_4</name>\r
6619                                         <clade>\r
6620                                           <taxonomy>\r
6621                                             <id provider="uniprot">561</id>\r
6622                                             <scientific_name>Escherichia</scientific_name>\r
6623                                             <rank>genus</rank>\r
6624                                           </taxonomy>\r
6625                                           <clade>\r
6626                                             <taxonomy>\r
6627                                               <id provider="uniprot">83333</id>\r
6628                                               <code>ECOLI</code>\r
6629                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
6630                                             </taxonomy>\r
6631                                           </clade>\r
6632                                           <clade>\r
6633                                             <taxonomy>\r
6634                                               <id provider="uniprot">83334</id>\r
6635                                               <code>ECO57</code>\r
6636                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
6637                                             </taxonomy>\r
6638                                           </clade>\r
6639                                         </clade>\r
6640                                         <clade>\r
6641                                           <taxonomy>\r
6642                                             <id provider="uniprot">623</id>\r
6643                                             <code>SHIFL</code>\r
6644                                             <scientific_name>Shigella flexneri</scientific_name>\r
6645                                             <rank>species</rank>\r
6646                                           </taxonomy>\r
6647                                         </clade>\r
6648                                       </clade>\r
6649                                       <clade>\r
6650                                         <taxonomy>\r
6651                                           <id provider="uniprot">90371</id>\r
6652                                           <code>SALTY</code>\r
6653                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
6654                                         </taxonomy>\r
6655                                       </clade>\r
6656                                     </clade>\r
6657                                     <clade>\r
6658                                       <taxonomy>\r
6659                                         <id provider="uniprot">632</id>\r
6660                                         <code>YERPE</code>\r
6661                                         <scientific_name>Yersinia pestis</scientific_name>\r
6662                                         <rank>species</rank>\r
6663                                       </taxonomy>\r
6664                                     </clade>\r
6665                                   </clade>\r
6666                                   <clade>\r
6667                                     <taxonomy>\r
6668                                       <id provider="uniprot">29488</id>\r
6669                                       <code>PHOLU</code>\r
6670                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
6671                                       <synonym>Xenorhabdus luminescens</synonym>\r
6672                                       <rank>species</rank>\r
6673                                     </taxonomy>\r
6674                                   </clade>\r
6675                                 </clade>\r
6676                                 <clade>\r
6677                                   <name>b_15</name>\r
6678                                   <clade>\r
6679                                     <name>b_13</name>\r
6680                                     <taxonomy>\r
6681                                       <id provider="uniprot">641</id>\r
6682                                       <scientific_name>Vibrionaceae</scientific_name>\r
6683                                       <rank>family</rank>\r
6684                                     </taxonomy>\r
6685                                     <clade>\r
6686                                       <taxonomy>\r
6687                                         <id provider="uniprot">74109</id>\r
6688                                         <code>PHOPR</code>\r
6689                                         <scientific_name>Photobacterium profundum</scientific_name>\r
6690                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
6691                                         <rank>species</rank>\r
6692                                       </taxonomy>\r
6693                                     </clade>\r
6694                                     <clade>\r
6695                                       <taxonomy>\r
6696                                         <id provider="uniprot">666</id>\r
6697                                         <code>VIBCH</code>\r
6698                                         <scientific_name>Vibrio cholerae</scientific_name>\r
6699                                         <rank>species</rank>\r
6700                                       </taxonomy>\r
6701                                     </clade>\r
6702                                   </clade>\r
6703                                   <clade>\r
6704                                     <taxonomy>\r
6705                                       <id provider="uniprot">318161</id>\r
6706                                       <code>SHEDO</code>\r
6707                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
6708                                     </taxonomy>\r
6709                                   </clade>\r
6710                                 </clade>\r
6711                               </clade>\r
6712                               <clade>\r
6713                                 <name>b_23</name>\r
6714                                 <clade>\r
6715                                   <name>b_21</name>\r
6716                                   <taxonomy>\r
6717                                     <id provider="uniprot">286</id>\r
6718                                     <scientific_name>Pseudomonas</scientific_name>\r
6719                                     <rank>genus</rank>\r
6720                                   </taxonomy>\r
6721                                   <clade>\r
6722                                     <name>b_19</name>\r
6723                                     <clade>\r
6724                                       <taxonomy>\r
6725                                         <id provider="uniprot">220664</id>\r
6726                                         <code>PSEF5</code>\r
6727                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
6728                                       </taxonomy>\r
6729                                     </clade>\r
6730                                     <clade>\r
6731                                       <taxonomy>\r
6732                                         <id provider="uniprot">205922</id>\r
6733                                         <code>PSEPF</code>\r
6734                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
6735                                       </taxonomy>\r
6736                                     </clade>\r
6737                                   </clade>\r
6738                                   <clade>\r
6739                                     <taxonomy>\r
6740                                       <id provider="uniprot">287</id>\r
6741                                       <code>PSEAE</code>\r
6742                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
6743                                       <rank>species</rank>\r
6744                                     </taxonomy>\r
6745                                   </clade>\r
6746                                 </clade>\r
6747                                 <clade>\r
6748                                   <taxonomy>\r
6749                                     <id provider="uniprot">290398</id>\r
6750                                     <code>CHRSD</code>\r
6751                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
6752                                   </taxonomy>\r
6753                                 </clade>\r
6754                               </clade>\r
6755                             </clade>\r
6756                             <clade>\r
6757                               <name>b_29</name>\r
6758                               <taxonomy>\r
6759                                 <id provider="uniprot">28216</id>\r
6760                                 <scientific_name>Betaproteobacteria</scientific_name>\r
6761                                 <rank>class</rank>\r
6762                               </taxonomy>\r
6763                               <clade>\r
6764                                 <taxonomy>\r
6765                                   <id provider="uniprot">159087</id>\r
6766                                   <code>DECAR</code>\r
6767                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
6768                                 </taxonomy>\r
6769                               </clade>\r
6770                               <clade>\r
6771                                 <taxonomy>\r
6772                                   <id provider="uniprot">266264</id>\r
6773                                   <code>RALME</code>\r
6774                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
6775                                 </taxonomy>\r
6776                               </clade>\r
6777                             </clade>\r
6778                           </clade>\r
6779                           <clade>\r
6780                             <name>b_43</name>\r
6781                             <clade>\r
6782                               <name>b_41</name>\r
6783                               <clade>\r
6784                                 <name>b_35</name>\r
6785                                 <taxonomy>\r
6786                                   <id provider="uniprot">28216</id>\r
6787                                   <scientific_name>Betaproteobacteria</scientific_name>\r
6788                                   <rank>class</rank>\r
6789                                 </taxonomy>\r
6790                                 <clade>\r
6791                                   <name>b_33</name>\r
6792                                   <taxonomy>\r
6793                                     <id provider="uniprot">206379</id>\r
6794                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
6795                                     <rank>family</rank>\r
6796                                   </taxonomy>\r
6797                                   <clade>\r
6798                                     <taxonomy>\r
6799                                       <id provider="uniprot">915</id>\r
6800                                       <code>NITEU</code>\r
6801                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
6802                                       <rank>species</rank>\r
6803                                     </taxonomy>\r
6804                                   </clade>\r
6805                                   <clade>\r
6806                                     <taxonomy>\r
6807                                       <id provider="uniprot">323848</id>\r
6808                                       <code>NITMU</code>\r
6809                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
6810                                     </taxonomy>\r
6811                                   </clade>\r
6812                                 </clade>\r
6813                                 <clade>\r
6814                                   <taxonomy>\r
6815                                     <id provider="uniprot">36861</id>\r
6816                                     <code>THIDE</code>\r
6817                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
6818                                     <rank>species</rank>\r
6819                                   </taxonomy>\r
6820                                 </clade>\r
6821                               </clade>\r
6822                               <clade>\r
6823                                 <name>b_40</name>\r
6824                                 <taxonomy>\r
6825                                   <id provider="uniprot">135613</id>\r
6826                                   <scientific_name>Chromatiales</scientific_name>\r
6827                                   <rank>order</rank>\r
6828                                 </taxonomy>\r
6829                                 <clade>\r
6830                                   <name>b_38</name>\r
6831                                   <taxonomy>\r
6832                                     <id provider="uniprot">72276</id>\r
6833                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
6834                                     <common_name>purple sulfur bacteria</common_name>\r
6835                                     <rank>family</rank>\r
6836                                   </taxonomy>\r
6837                                   <clade>\r
6838                                     <taxonomy>\r
6839                                       <id provider="uniprot">187272</id>\r
6840                                       <code>ALHEH</code>\r
6841                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
6842                                     </taxonomy>\r
6843                                   </clade>\r
6844                                   <clade>\r
6845                                     <taxonomy>\r
6846                                       <id provider="uniprot">349124</id>\r
6847                                       <code>HALHL</code>\r
6848                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
6849                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
6850                                     </taxonomy>\r
6851                                   </clade>\r
6852                                 </clade>\r
6853                                 <clade>\r
6854                                   <taxonomy>\r
6855                                     <id provider="uniprot">323261</id>\r
6856                                     <code>NITOC</code>\r
6857                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
6858                                   </taxonomy>\r
6859                                 </clade>\r
6860                               </clade>\r
6861                             </clade>\r
6862                             <clade>\r
6863                               <taxonomy>\r
6864                                 <id provider="uniprot">317025</id>\r
6865                                 <code>THICR</code>\r
6866                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
6867                               </taxonomy>\r
6868                             </clade>\r
6869                           </clade>\r
6870                         </clade>\r
6871                         <clade>\r
6872                           <name>b_51</name>\r
6873                           <taxonomy>\r
6874                             <id provider="uniprot">1236</id>\r
6875                             <scientific_name>Gammaproteobacteria</scientific_name>\r
6876                             <rank>class</rank>\r
6877                           </taxonomy>\r
6878                           <clade>\r
6879                             <name>b_47</name>\r
6880                             <clade>\r
6881                               <taxonomy>\r
6882                                 <id provider="uniprot">135577</id>\r
6883                                 <code>IDILO</code>\r
6884                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
6885                                 <rank>species</rank>\r
6886                               </taxonomy>\r
6887                             </clade>\r
6888                             <clade>\r
6889                               <taxonomy>\r
6890                                 <id provider="uniprot">446</id>\r
6891                                 <code>LEGPN</code>\r
6892                                 <scientific_name>Legionella pneumophila</scientific_name>\r
6893                                 <rank>species</rank>\r
6894                               </taxonomy>\r
6895                             </clade>\r
6896                           </clade>\r
6897                           <clade>\r
6898                             <name>b_50</name>\r
6899                             <taxonomy>\r
6900                               <id provider="uniprot">32033</id>\r
6901                               <scientific_name>Xanthomonadaceae</scientific_name>\r
6902                               <rank>family</rank>\r
6903                             </taxonomy>\r
6904                             <clade>\r
6905                               <taxonomy>\r
6906                                 <id provider="uniprot">190486</id>\r
6907                                 <code>XANAC</code>\r
6908                                 <scientific_name>Xanthomonas axonopodis pv. citri (strain 306)</scientific_name>\r
6909                                 <synonym>Xanthomonas citri pv. citri str. 306</synonym>\r
6910                               </taxonomy>\r
6911                             </clade>\r
6912                             <clade>\r
6913                               <taxonomy>\r
6914                                 <id provider="uniprot">183190</id>\r
6915                                 <code>XYLFT</code>\r
6916                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
6917                               </taxonomy>\r
6918                             </clade>\r
6919                           </clade>\r
6920                         </clade>\r
6921                       </clade>\r
6922                       <clade>\r
6923                         <name>b_71</name>\r
6924                         <taxonomy>\r
6925                           <id provider="uniprot">28211</id>\r
6926                           <scientific_name>Alphaproteobacteria</scientific_name>\r
6927                           <rank>class</rank>\r
6928                         </taxonomy>\r
6929                         <clade>\r
6930                           <name>b_67</name>\r
6931                           <clade>\r
6932                             <name>b_65</name>\r
6933                             <clade>\r
6934                               <name>b_61</name>\r
6935                               <taxonomy>\r
6936                                 <id provider="uniprot">356</id>\r
6937                                 <scientific_name>Rhizobiales</scientific_name>\r
6938                                 <rank>order</rank>\r
6939                               </taxonomy>\r
6940                               <clade>\r
6941                                 <name>b_57</name>\r
6942                                 <taxonomy>\r
6943                                   <id provider="uniprot">227290</id>\r
6944                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
6945                                 </taxonomy>\r
6946                                 <clade>\r
6947                                   <taxonomy>\r
6948                                     <id provider="uniprot">176299</id>\r
6949                                     <code>AGRT5</code>\r
6950                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
6951                                   </taxonomy>\r
6952                                 </clade>\r
6953                                 <clade>\r
6954                                   <taxonomy>\r
6955                                     <id provider="uniprot">347834</id>\r
6956                                     <code>RHIEC</code>\r
6957                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
6958                                   </taxonomy>\r
6959                                 </clade>\r
6960                               </clade>\r
6961                               <clade>\r
6962                                 <name>b_60</name>\r
6963                                 <taxonomy>\r
6964                                   <id provider="uniprot">41294</id>\r
6965                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
6966                                   <rank>family</rank>\r
6967                                 </taxonomy>\r
6968                                 <clade>\r
6969                                   <taxonomy>\r
6970                                     <id provider="uniprot">375</id>\r
6971                                     <code>BRAJA</code>\r
6972                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
6973                                     <rank>species</rank>\r
6974                                   </taxonomy>\r
6975                                 </clade>\r
6976                                 <clade>\r
6977                                   <taxonomy>\r
6978                                     <id provider="uniprot">395960</id>\r
6979                                     <code>RHOPT</code>\r
6980                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
6981                                   </taxonomy>\r
6982                                 </clade>\r
6983                               </clade>\r
6984                             </clade>\r
6985                             <clade>\r
6986                               <name>b_64</name>\r
6987                               <taxonomy>\r
6988                                 <id provider="uniprot">31989</id>\r
6989                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
6990                                 <rank>family</rank>\r
6991                               </taxonomy>\r
6992                               <clade>\r
6993                                 <taxonomy>\r
6994                                   <id provider="uniprot">349101</id>\r
6995                                   <code>RHOS1</code>\r
6996                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
6997                                 </taxonomy>\r
6998                               </clade>\r
6999                               <clade>\r
7000                                 <taxonomy>\r
7001                                   <id provider="uniprot">375451</id>\r
7002                                   <code>ROSDO</code>\r
7003                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
7004                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
7005                                   <synonym>Roseobacter denitrificans</synonym>\r
7006                                 </taxonomy>\r
7007                               </clade>\r
7008                             </clade>\r
7009                           </clade>\r
7010                           <clade>\r
7011                             <taxonomy>\r
7012                               <id provider="uniprot">155892</id>\r
7013                               <code>CAUCR</code>\r
7014                               <scientific_name>Caulobacter crescentus</scientific_name>\r
7015                               <synonym>Caulobacter vibrioides</synonym>\r
7016                               <rank>species</rank>\r
7017                             </taxonomy>\r
7018                           </clade>\r
7019                         </clade>\r
7020                         <clade>\r
7021                           <name>b_70</name>\r
7022                           <taxonomy>\r
7023                             <id provider="uniprot">204441</id>\r
7024                             <scientific_name>Rhodospirillales</scientific_name>\r
7025                             <rank>order</rank>\r
7026                           </taxonomy>\r
7027                           <clade>\r
7028                             <taxonomy>\r
7029                               <id provider="uniprot">524</id>\r
7030                               <code>ACICY</code>\r
7031                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
7032                               <rank>species</rank>\r
7033                             </taxonomy>\r
7034                           </clade>\r
7035                           <clade>\r
7036                             <taxonomy>\r
7037                               <id provider="uniprot">1085</id>\r
7038                               <code>RHORU</code>\r
7039                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
7040                               <rank>species</rank>\r
7041                             </taxonomy>\r
7042                           </clade>\r
7043                         </clade>\r
7044                       </clade>\r
7045                     </clade>\r
7046                     <clade>\r
7047                       <name>b_79</name>\r
7048                       <clade>\r
7049                         <name>b_77</name>\r
7050                         <taxonomy>\r
7051                           <id provider="uniprot">1224</id>\r
7052                           <scientific_name>Proteobacteria</scientific_name>\r
7053                           <rank>phylum</rank>\r
7054                         </taxonomy>\r
7055                         <clade>\r
7056                           <name>b_75</name>\r
7057                           <taxonomy>\r
7058                             <id provider="uniprot">712</id>\r
7059                             <scientific_name>Pasteurellaceae</scientific_name>\r
7060                             <rank>family</rank>\r
7061                           </taxonomy>\r
7062                           <clade>\r
7063                             <taxonomy>\r
7064                               <id provider="uniprot">727</id>\r
7065                               <code>HAEIN</code>\r
7066                               <scientific_name>Haemophilus influenzae</scientific_name>\r
7067                               <rank>species</rank>\r
7068                             </taxonomy>\r
7069                           </clade>\r
7070                           <clade>\r
7071                             <taxonomy>\r
7072                               <id provider="uniprot">747</id>\r
7073                               <code>PASMU</code>\r
7074                               <scientific_name>Pasteurella multocida</scientific_name>\r
7075                               <rank>species</rank>\r
7076                             </taxonomy>\r
7077                           </clade>\r
7078                         </clade>\r
7079                         <clade>\r
7080                           <taxonomy>\r
7081                             <id provider="uniprot">487</id>\r
7082                             <code>NEIME</code>\r
7083                             <scientific_name>Neisseria meningitidis</scientific_name>\r
7084                             <rank>species</rank>\r
7085                           </taxonomy>\r
7086                         </clade>\r
7087                       </clade>\r
7088                       <clade>\r
7089                         <taxonomy>\r
7090                           <id provider="uniprot">905</id>\r
7091                           <code>ACIFE</code>\r
7092                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
7093                           <rank>species</rank>\r
7094                         </taxonomy>\r
7095                       </clade>\r
7096                     </clade>\r
7097                   </clade>\r
7098                   <clade>\r
7099                     <name>b_103</name>\r
7100                     <clade>\r
7101                       <name>b_91</name>\r
7102                       <taxonomy>\r
7103                         <id provider="uniprot">28221</id>\r
7104                         <scientific_name>Deltaproteobacteria</scientific_name>\r
7105                         <rank>class</rank>\r
7106                       </taxonomy>\r
7107                       <clade>\r
7108                         <name>b_87</name>\r
7109                         <clade>\r
7110                           <name>b_83</name>\r
7111                           <clade>\r
7112                             <taxonomy>\r
7113                               <id provider="uniprot">84980</id>\r
7114                               <code>DESPS</code>\r
7115                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
7116                               <rank>species</rank>\r
7117                             </taxonomy>\r
7118                           </clade>\r
7119                           <clade>\r
7120                             <taxonomy>\r
7121                               <id provider="uniprot">876</id>\r
7122                               <code>DESDE</code>\r
7123                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
7124                               <rank>species</rank>\r
7125                             </taxonomy>\r
7126                           </clade>\r
7127                         </clade>\r
7128                         <clade>\r
7129                           <taxonomy>\r
7130                             <id provider="uniprot">56780</id>\r
7131                             <code>SYNAS</code>\r
7132                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
7133                           </taxonomy>\r
7134                         </clade>\r
7135                       </clade>\r
7136                       <clade>\r
7137                         <name>b_90</name>\r
7138                         <taxonomy>\r
7139                           <id provider="uniprot">28231</id>\r
7140                           <scientific_name>Geobacter</scientific_name>\r
7141                           <rank>genus</rank>\r
7142                         </taxonomy>\r
7143                         <clade>\r
7144                           <taxonomy>\r
7145                             <id provider="uniprot">28232</id>\r
7146                             <code>GEOME</code>\r
7147                             <scientific_name>Geobacter metallireducens</scientific_name>\r
7148                             <rank>species</rank>\r
7149                           </taxonomy>\r
7150                         </clade>\r
7151                         <clade>\r
7152                           <taxonomy>\r
7153                             <id provider="uniprot">35554</id>\r
7154                             <code>GEOSL</code>\r
7155                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
7156                             <rank>species</rank>\r
7157                           </taxonomy>\r
7158                         </clade>\r
7159                       </clade>\r
7160                     </clade>\r
7161                     <clade>\r
7162                       <name>b_102</name>\r
7163                       <clade>\r
7164                         <name>b_98</name>\r
7165                         <clade>\r
7166                           <name>b_94</name>\r
7167                           <taxonomy>\r
7168                             <id provider="uniprot">31</id>\r
7169                             <scientific_name>Myxococcaceae</scientific_name>\r
7170                             <rank>family</rank>\r
7171                           </taxonomy>\r
7172                           <clade>\r
7173                             <taxonomy>\r
7174                               <id provider="uniprot">290397</id>\r
7175                               <code>ANADE</code>\r
7176                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
7177                             </taxonomy>\r
7178                           </clade>\r
7179                           <clade>\r
7180                             <taxonomy>\r
7181                               <id provider="uniprot">34</id>\r
7182                               <code>MYXXA</code>\r
7183                               <scientific_name>Myxococcus xanthus</scientific_name>\r
7184                               <rank>species</rank>\r
7185                             </taxonomy>\r
7186                           </clade>\r
7187                         </clade>\r
7188                         <clade>\r
7189                           <name>b_97</name>\r
7190                           <taxonomy>\r
7191                             <id provider="uniprot">57723</id>\r
7192                             <scientific_name>Acidobacteria</scientific_name>\r
7193                             <rank>phylum</rank>\r
7194                           </taxonomy>\r
7195                           <clade>\r
7196                             <taxonomy>\r
7197                               <id provider="uniprot">204669</id>\r
7198                               <code>KORVE</code>\r
7199                               <scientific_name>Koribacter versatilis (strain Ellin345)</scientific_name>\r
7200                               <synonym>Acidobacteria bacterium Ellin345</synonym>\r
7201                               <synonym>Candidatus Koribacter versatilis Ellin345</synonym>\r
7202                             </taxonomy>\r
7203                           </clade>\r
7204                           <clade>\r
7205                             <taxonomy>\r
7206                               <id provider="uniprot">332163</id>\r
7207                               <code>SOLUS</code>\r
7208                               <scientific_name>Solibacter usitatus</scientific_name>\r
7209                               <rank>species</rank>\r
7210                             </taxonomy>\r
7211                           </clade>\r
7212                         </clade>\r
7213                       </clade>\r
7214                       <clade>\r
7215                         <taxonomy>\r
7216                           <id provider="uniprot">265606</id>\r
7217                           <code>RHOBA</code>\r
7218                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
7219                           <rank>species</rank>\r
7220                         </taxonomy>\r
7221                       </clade>\r
7222                     </clade>\r
7223                   </clade>\r
7224                 </clade>\r
7225                 <clade>\r
7226                   <name>b_193</name>\r
7227                   <clade>\r
7228                     <name>b_163</name>\r
7229                     <clade>\r
7230                       <name>b_133</name>\r
7231                       <clade>\r
7232                         <name>Chloroflexi &amp; Actinobacteria</name>\r
7233                         <clade>\r
7234                           <taxonomy>\r
7235                             <id provider="uniprot">201174</id>\r
7236                             <scientific_name>Actinobacteria</scientific_name>\r
7237                             <rank>phylum</rank>\r
7238                           </taxonomy>\r
7239                           <clade>\r
7240                             <taxonomy>\r
7241                               <id provider="uniprot">2037</id>\r
7242                               <scientific_name>Actinomycetales</scientific_name>\r
7243                               <rank>order</rank>\r
7244                             </taxonomy>\r
7245                             <clade>\r
7246                               <name>b_115</name>\r
7247                               <clade>\r
7248                                 <taxonomy>\r
7249                                   <id provider="uniprot">266940</id>\r
7250                                   <code>KINRD</code>\r
7251                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
7252                                 </taxonomy>\r
7253                               </clade>\r
7254                               <clade>\r
7255                                 <taxonomy>\r
7256                                   <id provider="uniprot">378753</id>\r
7257                                   <code>KOCRD</code>\r
7258                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>\r
7259                                 </taxonomy>\r
7260                               </clade>\r
7261                               <clade>\r
7262                                 <taxonomy>\r
7263                                   <id provider="uniprot">1032480</id>\r
7264                                   <code>MICPN</code>\r
7265                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
7266                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
7267                                   <rank>strain</rank>\r
7268                                 </taxonomy>\r
7269                               </clade>\r
7270                               <clade>\r
7271                                 <taxonomy>\r
7272                                   <id provider="uniprot">1902</id>\r
7273                                   <code>STRCO</code>\r
7274                                   <scientific_name>Streptomyces coelicolor</scientific_name>\r
7275                                   <rank>species</rank>\r
7276                                 </taxonomy>\r
7277                               </clade>\r
7278                               <clade>\r
7279                                 <taxonomy>\r
7280                                   <id provider="uniprot">269800</id>\r
7281                                   <code>THEFY</code>\r
7282                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>\r
7283                                 </taxonomy>\r
7284                               </clade>\r
7285                             </clade>\r
7286                             <clade>\r
7287                               <taxonomy>\r
7288                                 <id provider="uniprot">85007</id>\r
7289                                 <scientific_name>Corynebacterineae</scientific_name>\r
7290                                 <rank>suborder</rank>\r
7291                               </taxonomy>\r
7292                               <clade>\r
7293                                 <taxonomy>\r
7294                                   <id provider="uniprot">1763</id>\r
7295                                   <scientific_name>Mycobacterium</scientific_name>\r
7296                                   <rank>genus</rank>\r
7297                                 </taxonomy>\r
7298                                 <clade>\r
7299                                   <taxonomy>\r
7300                                     <id provider="uniprot">1769</id>\r
7301                                     <code>MYCLE</code>\r
7302                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
7303                                     <rank>species</rank>\r
7304                                   </taxonomy>\r
7305                                 </clade>\r
7306                                 <clade>\r
7307                                   <taxonomy>\r
7308                                     <id provider="uniprot">1773</id>\r
7309                                     <code>MYCTU</code>\r
7310                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
7311                                     <rank>species</rank>\r
7312                                   </taxonomy>\r
7313                                 </clade>\r
7314                               </clade>\r
7315                               <clade>\r
7316                                 <taxonomy>\r
7317                                   <id provider="uniprot">306537</id>\r
7318                                   <code>CORJK</code>\r
7319                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>\r
7320                                 </taxonomy>\r
7321                               </clade>\r
7322                               <clade>\r
7323                                 <taxonomy>\r
7324                                   <id provider="uniprot">632772</id>\r
7325                                   <code>RHOOB</code>\r
7326                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
7327                                   <rank>strain</rank>\r
7328                                 </taxonomy>\r
7329                               </clade>\r
7330                             </clade>\r
7331                           </clade>\r
7332                           <clade>\r
7333                             <taxonomy>\r
7334                               <id provider="uniprot">266117</id>\r
7335                               <code>RUBXD</code>\r
7336                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
7337                             </taxonomy>\r
7338                           </clade>\r
7339                         </clade>\r
7340                         <clade>\r
7341                           <taxonomy>\r
7342                             <id provider="uniprot">200795</id>\r
7343                             <scientific_name>Chloroflexi</scientific_name>\r
7344                             <common_name>GNS bacteria</common_name>\r
7345                             <synonym>Thermomicrobia</synonym>\r
7346                             <rank>phylum</rank>\r
7347                           </taxonomy>\r
7348                           <clade>\r
7349                             <taxonomy>\r
7350                               <id provider="uniprot">32061</id>\r
7351                               <scientific_name>Chloroflexi (class)</scientific_name>\r
7352                               <synonym>Chloroflecales</synonym>\r
7353                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
7354                               <rank>class</rank>\r
7355                             </taxonomy>\r
7356                             <clade>\r
7357                               <taxonomy>\r
7358                                 <id provider="uniprot">1106</id>\r
7359                                 <scientific_name>Chloroflexaceae</scientific_name>\r
7360                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
7361                                 <rank>family</rank>\r
7362                               </taxonomy>\r
7363                               <clade>\r
7364                                 <taxonomy>\r
7365                                   <id provider="uniprot">1108</id>\r
7366                                   <code>CHLAU</code>\r
7367                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
7368                                   <rank>species</rank>\r
7369                                 </taxonomy>\r
7370                               </clade>\r
7371                               <clade>\r
7372                                 <taxonomy>\r
7373                                   <id provider="uniprot">383372</id>\r
7374                                   <code>ROSCS</code>\r
7375                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
7376                                   <rank>species</rank>\r
7377                                 </taxonomy>\r
7378                               </clade>\r
7379                             </clade>\r
7380                             <clade>\r
7381                               <taxonomy>\r
7382                                 <id provider="uniprot">65</id>\r
7383                                 <code>HERAU</code>\r
7384                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
7385                                 <synonym>Herpetosiphon giganteus</synonym>\r
7386                                 <rank>species</rank>\r
7387                               </taxonomy>\r
7388                             </clade>\r
7389                           </clade>\r
7390                           <clade>\r
7391                             <taxonomy>\r
7392                               <id provider="uniprot">479434</id>\r
7393                               <code>SPHTD</code>\r
7394                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
7395                               <rank>strain</rank>\r
7396                             </taxonomy>\r
7397                           </clade>\r
7398                         </clade>\r
7399                       </clade>\r
7400                       <clade>\r
7401                         <name>b_132</name>\r
7402                         <taxonomy>\r
7403                           <id provider="uniprot">188787</id>\r
7404                           <scientific_name>Deinococci</scientific_name>\r
7405                           <rank>class</rank>\r
7406                         </taxonomy>\r
7407                         <clade>\r
7408                           <taxonomy>\r
7409                             <id provider="uniprot">1298</id>\r
7410                             <scientific_name>Deinococcus</scientific_name>\r
7411                             <rank>genus</rank>\r
7412                           </taxonomy>\r
7413                           <clade>\r
7414                             <taxonomy>\r
7415                               <id provider="uniprot">319795</id>\r
7416                               <code>DEIGD</code>\r
7417                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
7418                             </taxonomy>\r
7419                           </clade>\r
7420                           <clade>\r
7421                             <taxonomy>\r
7422                               <id provider="uniprot">1299</id>\r
7423                               <code>DEIRA</code>\r
7424                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
7425                               <rank>species</rank>\r
7426                             </taxonomy>\r
7427                           </clade>\r
7428                         </clade>\r
7429                         <clade>\r
7430                           <taxonomy>\r
7431                             <id provider="uniprot">300852</id>\r
7432                             <code>THET8</code>\r
7433                             <scientific_name>Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)</scientific_name>\r
7434                             <rank>strain</rank>\r
7435                           </taxonomy>\r
7436                         </clade>\r
7437                       </clade>\r
7438                     </clade>\r
7439                     <clade>\r
7440                       <name>b_162</name>\r
7441                       <taxonomy>\r
7442                         <id provider="uniprot">1117</id>\r
7443                         <scientific_name>Cyanobacteria</scientific_name>\r
7444                         <rank>phylum</rank>\r
7445                       </taxonomy>\r
7446                       <clade>\r
7447                         <name>b_154</name>\r
7448                         <clade>\r
7449                           <name>b_152</name>\r
7450                           <clade>\r
7451                             <name>b_146</name>\r
7452                             <clade>\r
7453                               <name>b_144</name>\r
7454                               <clade>\r
7455                                 <name>b_142</name>\r
7456                                 <clade>\r
7457                                   <name>b_138</name>\r
7458                                   <taxonomy>\r
7459                                     <id provider="uniprot">1162</id>\r
7460                                     <scientific_name>Nostocaceae</scientific_name>\r
7461                                     <rank>family</rank>\r
7462                                   </taxonomy>\r
7463                                   <clade>\r
7464                                     <name>b_136</name>\r
7465                                     <clade>\r
7466                                       <taxonomy>\r
7467                                         <id provider="uniprot">240292</id>\r
7468                                         <code>ANAVT</code>\r
7469                                         <scientific_name>Anabaena variabilis (strain ATCC 29413 / PCC 7937)</scientific_name>\r
7470                                         <synonym>Anabaena flos-aquae (strain IUCC 1444)</synonym>\r
7471                                         <rank>strain</rank>\r
7472                                       </taxonomy>\r
7473                                     </clade>\r
7474                                     <clade>\r
7475                                       <taxonomy>\r
7476                                         <id provider="uniprot">28072</id>\r
7477                                         <code>NOSS7</code>\r
7478                                         <scientific_name>Nostoc sp. (strain ATCC 29411 / PCC 7524)</scientific_name>\r
7479                                         <rank>species</rank>\r
7480                                       </taxonomy>\r
7481                                     </clade>\r
7482                                   </clade>\r
7483                                   <clade>\r
7484                                     <taxonomy>\r
7485                                       <id provider="uniprot">63737</id>\r
7486                                       <code>NOSP7</code>\r
7487                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
7488                                       <rank>strain</rank>\r
7489                                     </taxonomy>\r
7490                                   </clade>\r
7491                                 </clade>\r
7492                                 <clade>\r
7493                                   <taxonomy>\r
7494                                     <id provider="uniprot">329726</id>\r
7495                                     <code>ACAM1</code>\r
7496                                     <scientific_name>Acaryochloris marina (strain MBIC 11017</scientific_name>\r
7497                                     <rank>strain</rank>\r
7498                                   </taxonomy>\r
7499                                 </clade>\r
7500                               </clade>\r
7501                               <clade>\r
7502                                 <taxonomy>\r
7503                                   <id provider="uniprot">449447</id>\r
7504                                   <code>MICAN</code>\r
7505                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
7506                                 </taxonomy>\r
7507                               </clade>\r
7508                             </clade>\r
7509                             <clade>\r
7510                               <taxonomy>\r
7511                                 <id provider="uniprot">1206</id>\r
7512                                 <code>TRIER</code>\r
7513                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
7514                                 <rank>species</rank>\r
7515                               </taxonomy>\r
7516                             </clade>\r
7517                           </clade>\r
7518                           <clade>\r
7519                             <taxonomy>\r
7520                               <id provider="uniprot">1118</id>\r
7521                               <scientific_name>Chroococcales</scientific_name>\r
7522                               <rank>order</rank>\r
7523                             </taxonomy>\r
7524                             <clade>\r
7525                               <taxonomy>\r
7526                                 <id provider="uniprot">32046</id>\r
7527                                 <code>SYNEL</code>\r
7528                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
7529                                 <rank>species</rank>\r
7530                               </taxonomy>\r
7531                             </clade>\r
7532                             <clade>\r
7533                               <taxonomy>\r
7534                                 <id provider="uniprot">1111708</id>\r
7535                                 <code>SYNY3</code>\r
7536                                 <scientific_name>Synechocystis sp. (strain PCC 6803 / Kazusa)</scientific_name>\r
7537                               </taxonomy>\r
7538                             </clade>\r
7539                           </clade>\r
7540                         </clade>\r
7541                         <clade>\r
7542                           <taxonomy>\r
7543                             <id provider="uniprot">33072</id>\r
7544                             <code>GLOVI</code>\r
7545                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
7546                             <rank>species</rank>\r
7547                           </taxonomy>\r
7548                         </clade>\r
7549                       </clade>\r
7550                       <clade>\r
7551                         <name>b_161</name>\r
7552                         <clade>\r
7553                           <name>b_159</name>\r
7554                           <taxonomy>\r
7555                             <id provider="uniprot">1218</id>\r
7556                             <scientific_name>Prochlorococcus</scientific_name>\r
7557                             <rank>genus</rank>\r
7558                           </taxonomy>\r
7559                           <clade>\r
7560                             <name>b_157</name>\r
7561                             <clade>\r
7562                               <taxonomy>\r
7563                                 <id provider="uniprot">1219</id>\r
7564                                 <code>PROMA</code>\r
7565                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
7566                                 <rank>species</rank>\r
7567                               </taxonomy>\r
7568                             </clade>\r
7569                             <clade>\r
7570                               <taxonomy>\r
7571                                 <id provider="uniprot">59919</id>\r
7572                                 <code>PROMP</code>\r
7573                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
7574                               </taxonomy>\r
7575                             </clade>\r
7576                           </clade>\r
7577                           <clade>\r
7578                             <taxonomy>\r
7579                               <id provider="uniprot">74547</id>\r
7580                               <code>PROMM</code>\r
7581                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
7582                             </taxonomy>\r
7583                           </clade>\r
7584                         </clade>\r
7585                         <clade>\r
7586                           <taxonomy>\r
7587                             <id provider="uniprot">64471</id>\r
7588                             <code>SYNS3</code>\r
7589                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
7590                             <rank>species</rank>\r
7591                           </taxonomy>\r
7592                         </clade>\r
7593                       </clade>\r
7594                     </clade>\r
7595                   </clade>\r
7596                   <clade>\r
7597                     <name>b_192</name>\r
7598                     <clade>\r
7599                       <name>b_190</name>\r
7600                       <clade>\r
7601                         <name>b_178</name>\r
7602                         <clade>\r
7603                           <name>b_176</name>\r
7604                           <taxonomy>\r
7605                             <id provider="uniprot">191412</id>\r
7606                             <scientific_name>Chlorobiaceae</scientific_name>\r
7607                             <rank>family</rank>\r
7608                           </taxonomy>\r
7609                           <clade>\r
7610                             <name>b_170</name>\r
7611                             <clade>\r
7612                               <name>b_166</name>\r
7613                               <clade>\r
7614                                 <taxonomy>\r
7615                                   <id provider="uniprot">331678</id>\r
7616                                   <code>CHLPB</code>\r
7617                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
7618                                 </taxonomy>\r
7619                               </clade>\r
7620                               <clade>\r
7621                                 <taxonomy>\r
7622                                   <id provider="uniprot">1102</id>\r
7623                                   <code>PROAE</code>\r
7624                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
7625                                   <rank>species</rank>\r
7626                                 </taxonomy>\r
7627                               </clade>\r
7628                             </clade>\r
7629                             <clade>\r
7630                               <name>b_169</name>\r
7631                               <taxonomy>\r
7632                                 <id provider="uniprot">274493</id>\r
7633                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
7634                               </taxonomy>\r
7635                               <clade>\r
7636                                 <taxonomy>\r
7637                                   <id provider="uniprot">1100</id>\r
7638                                   <code>PELLU</code>\r
7639                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
7640                                   <rank>species</rank>\r
7641                                 </taxonomy>\r
7642                               </clade>\r
7643                               <clade>\r
7644                                 <taxonomy>\r
7645                                   <id provider="uniprot">290318</id>\r
7646                                   <code>PROVI</code>\r
7647                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
7648                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
7649                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
7650                                 </taxonomy>\r
7651                               </clade>\r
7652                             </clade>\r
7653                           </clade>\r
7654                           <clade>\r
7655                             <name>b_175</name>\r
7656                             <clade>\r
7657                               <taxonomy>\r
7658                                 <id provider="uniprot">256319</id>\r
7659                                 <scientific_name>Chlorobaculum</scientific_name>\r
7660                                 <rank>genus</rank>\r
7661                               </taxonomy>\r
7662                               <clade>\r
7663                                 <taxonomy>\r
7664                                   <id provider="uniprot">517417</id>\r
7665                                   <code>CHLP8</code>\r
7666                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
7667                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
7668                                 </taxonomy>\r
7669                               </clade>\r
7670                               <clade>\r
7671                                 <taxonomy>\r
7672                                   <id provider="uniprot">1097</id>\r
7673                                   <code>CHLTE</code>\r
7674                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
7675                                   <rank>species</rank>\r
7676                                 </taxonomy>\r
7677                               </clade>\r
7678                             </clade>\r
7679                             <clade>\r
7680                               <taxonomy>\r
7681                                 <id provider="uniprot">340177</id>\r
7682                                 <code>CHLCH</code>\r
7683                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
7684                               </taxonomy>\r
7685                             </clade>\r
7686                           </clade>\r
7687                         </clade>\r
7688                         <clade>\r
7689                           <taxonomy>\r
7690                             <id provider="uniprot">315277</id>\r
7691                             <code>CHLTA</code>\r
7692                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
7693                           </taxonomy>\r
7694                         </clade>\r
7695                       </clade>\r
7696                       <clade>\r
7697                         <name>b_189</name>\r
7698                         <taxonomy>\r
7699                           <id provider="uniprot">976</id>\r
7700                           <scientific_name>Bacteroidetes</scientific_name>\r
7701                           <rank>phylum</rank>\r
7702                         </taxonomy>\r
7703                         <clade>\r
7704                           <name>b_183</name>\r
7705                           <clade>\r
7706                             <name>b_181</name>\r
7707                             <taxonomy>\r
7708                               <id provider="uniprot">49546</id>\r
7709                               <scientific_name>Flavobacteriaceae</scientific_name>\r
7710                               <rank>family</rank>\r
7711                             </taxonomy>\r
7712                             <clade>\r
7713                               <taxonomy>\r
7714                                 <id provider="uniprot">986</id>\r
7715                                 <code>FLAJO</code>\r
7716                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
7717                                 <synonym>Cytophaga johnsonae</synonym>\r
7718                                 <rank>species</rank>\r
7719                               </taxonomy>\r
7720                             </clade>\r
7721                             <clade>\r
7722                               <taxonomy>\r
7723                                 <id provider="uniprot">411154</id>\r
7724                                 <code>GRAFK</code>\r
7725                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
7726                               </taxonomy>\r
7727                             </clade>\r
7728                           </clade>\r
7729                           <clade>\r
7730                             <taxonomy>\r
7731                               <id provider="uniprot">269798</id>\r
7732                               <code>CYTH3</code>\r
7733                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
7734                             </taxonomy>\r
7735                           </clade>\r
7736                         </clade>\r
7737                         <clade>\r
7738                           <name>b_188</name>\r
7739                           <taxonomy>\r
7740                             <id provider="uniprot">171549</id>\r
7741                             <scientific_name>Bacteroidales</scientific_name>\r
7742                             <rank>order</rank>\r
7743                           </taxonomy>\r
7744                           <clade>\r
7745                             <name>b_186</name>\r
7746                             <taxonomy>\r
7747                               <id provider="uniprot">816</id>\r
7748                               <scientific_name>Bacteroides</scientific_name>\r
7749                               <rank>genus</rank>\r
7750                             </taxonomy>\r
7751                             <clade>\r
7752                               <taxonomy>\r
7753                                 <id provider="uniprot">817</id>\r
7754                                 <code>BACFR</code>\r
7755                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
7756                                 <rank>species</rank>\r
7757                               </taxonomy>\r
7758                             </clade>\r
7759                             <clade>\r
7760                               <taxonomy>\r
7761                                 <id provider="uniprot">818</id>\r
7762                                 <code>BACTN</code>\r
7763                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
7764                                 <rank>species</rank>\r
7765                               </taxonomy>\r
7766                             </clade>\r
7767                           </clade>\r
7768                           <clade>\r
7769                             <taxonomy>\r
7770                               <id provider="uniprot">837</id>\r
7771                               <code>PORGI</code>\r
7772                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
7773                               <synonym>Bacteroides gingivalis</synonym>\r
7774                               <rank>species</rank>\r
7775                             </taxonomy>\r
7776                           </clade>\r
7777                         </clade>\r
7778                       </clade>\r
7779                     </clade>\r
7780                     <clade>\r
7781                       <taxonomy>\r
7782                         <id provider="uniprot">309807</id>\r
7783                         <code>SALRD</code>\r
7784                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
7785                       </taxonomy>\r
7786                     </clade>\r
7787                   </clade>\r
7788                 </clade>\r
7789               </clade>\r
7790               <clade>\r
7791                 <name>b_199</name>\r
7792                 <clade>\r
7793                   <name>b_197</name>\r
7794                   <taxonomy>\r
7795                     <scientific_name>Verrucomicrobia</scientific_name>\r
7796                   </taxonomy>\r
7797                   <clade>\r
7798                     <taxonomy>\r
7799                       <id provider="uniprot">349741</id>\r
7800                       <code>AKKM8</code>\r
7801                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
7802                     </taxonomy>\r
7803                   </clade>\r
7804                   <clade>\r
7805                     <taxonomy>\r
7806                       <id provider="uniprot">481448</id>\r
7807                       <code>METI4</code>\r
7808                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
7809                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
7810                     </taxonomy>\r
7811                   </clade>\r
7812                 </clade>\r
7813                 <clade>\r
7814                   <taxonomy>\r
7815                     <id provider="uniprot">44275</id>\r
7816                     <code>LEPIC</code>\r
7817                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
7818                   </taxonomy>\r
7819                 </clade>\r
7820               </clade>\r
7821             </clade>\r
7822             <clade>\r
7823               <name>b_225</name>\r
7824               <clade>\r
7825                 <name>b_219</name>\r
7826                 <taxonomy>\r
7827                   <id provider="uniprot">1239</id>\r
7828                   <scientific_name>Firmicutes</scientific_name>\r
7829                   <rank>phylum</rank>\r
7830                 </taxonomy>\r
7831                 <clade>\r
7832                   <name>b_213</name>\r
7833                   <clade>\r
7834                     <taxonomy>\r
7835                       <id provider="uniprot">1385</id>\r
7836                       <scientific_name>Bacillales</scientific_name>\r
7837                       <rank>order</rank>\r
7838                     </taxonomy>\r
7839                     <clade>\r
7840                       <taxonomy>\r
7841                         <id provider="uniprot">186817</id>\r
7842                         <scientific_name>Bacillaceae</scientific_name>\r
7843                         <rank>family</rank>\r
7844                       </taxonomy>\r
7845                       <clade>\r
7846                         <taxonomy>\r
7847                           <id provider="uniprot">1386</id>\r
7848                           <scientific_name>Bacillus</scientific_name>\r
7849                           <rank>genus</rank>\r
7850                         </taxonomy>\r
7851                         <clade>\r
7852                           <taxonomy>\r
7853                             <id provider="uniprot">86661</id>\r
7854                             <scientific_name>Bacillus cereus group</scientific_name>\r
7855                           </taxonomy>\r
7856                           <clade>\r
7857                             <taxonomy>\r
7858                               <id provider="uniprot">1392</id>\r
7859                               <code>BACAN</code>\r
7860                               <scientific_name>Bacillus anthracis</scientific_name>\r
7861                               <rank>species</rank>\r
7862                             </taxonomy>\r
7863                           </clade>\r
7864                           <clade>\r
7865                             <taxonomy>\r
7866                               <id provider="uniprot">572264</id>\r
7867                               <code>BACC3</code>\r
7868                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
7869                               <rank>strain</rank>\r
7870                             </taxonomy>\r
7871                           </clade>\r
7872                         </clade>\r
7873                         <clade>\r
7874                           <taxonomy>\r
7875                             <id provider="uniprot">224308</id>\r
7876                             <code>BACSU</code>\r
7877                             <scientific_name>Bacillus subtilis (strain 168)</scientific_name>\r
7878                             <synonym>Bacillus subtilis subsp. subtilis str. 168</synonym>\r
7879                           </taxonomy>\r
7880                         </clade>\r
7881                       </clade>\r
7882                       <clade>\r
7883                         <name>b_206</name>\r
7884                         <clade>\r
7885                           <taxonomy>\r
7886                             <id provider="uniprot">86665</id>\r
7887                             <code>BACHD</code>\r
7888                             <scientific_name>Bacillus halodurans</scientific_name>\r
7889                             <rank>species</rank>\r
7890                           </taxonomy>\r
7891                         </clade>\r
7892                         <clade>\r
7893                           <taxonomy>\r
7894                             <id provider="uniprot">1462</id>\r
7895                             <code>GEOKA</code>\r
7896                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
7897                             <rank>species</rank>\r
7898                           </taxonomy>\r
7899                         </clade>\r
7900                       </clade>\r
7901                     </clade>\r
7902                     <clade>\r
7903                       <name>b_210</name>\r
7904                       <clade>\r
7905                         <taxonomy>\r
7906                           <id provider="uniprot">1639</id>\r
7907                           <code>LISMO</code>\r
7908                           <scientific_name>Listeria monocytogenes</scientific_name>\r
7909                           <rank>species</rank>\r
7910                         </taxonomy>\r
7911                       </clade>\r
7912                       <clade>\r
7913                         <taxonomy>\r
7914                           <id provider="uniprot">1280</id>\r
7915                           <code>STAAU</code>\r
7916                           <scientific_name>Staphylococcus aureus</scientific_name>\r
7917                           <rank>species</rank>\r
7918                         </taxonomy>\r
7919                       </clade>\r
7920                     </clade>\r
7921                   </clade>\r
7922                   <clade>\r
7923                     <taxonomy>\r
7924                       <id provider="uniprot">195103</id>\r
7925                       <code>CLOP1</code>\r
7926                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
7927                     </taxonomy>\r
7928                   </clade>\r
7929                 </clade>\r
7930                 <clade>\r
7931                   <name>Clostridia</name>\r
7932                   <taxonomy>\r
7933                     <id provider="uniprot">186801</id>\r
7934                     <scientific_name>Clostridia</scientific_name>\r
7935                     <rank>class</rank>\r
7936                   </taxonomy>\r
7937                   <clade>\r
7938                     <name>b_218</name>\r
7939                     <clade>\r
7940                       <name>b_216</name>\r
7941                       <taxonomy>\r
7942                         <id provider="uniprot">186814</id>\r
7943                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
7944                         <rank>family</rank>\r
7945                       </taxonomy>\r
7946                       <clade>\r
7947                         <taxonomy>\r
7948                           <id provider="uniprot">246194</id>\r
7949                           <code>CARHZ</code>\r
7950                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
7951                         </taxonomy>\r
7952                       </clade>\r
7953                       <clade>\r
7954                         <taxonomy>\r
7955                           <id provider="uniprot">119072</id>\r
7956                           <code>THETN</code>\r
7957                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
7958                           <rank>species</rank>\r
7959                         </taxonomy>\r
7960                       </clade>\r
7961                     </clade>\r
7962                     <clade>\r
7963                       <taxonomy>\r
7964                         <id provider="uniprot">49338</id>\r
7965                         <code>DESHA</code>\r
7966                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
7967                         <synonym>Desulfitobacterium frappieri</synonym>\r
7968                         <rank>species</rank>\r
7969                       </taxonomy>\r
7970                     </clade>\r
7971                   </clade>\r
7972                   <clade>\r
7973                     <taxonomy>\r
7974                       <id provider="uniprot">515619</id>\r
7975                       <code>EUBR3</code>\r
7976                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
7977                     </taxonomy>\r
7978                   </clade>\r
7979                 </clade>\r
7980               </clade>\r
7981               <clade>\r
7982                 <name>b_224</name>\r
7983                 <taxonomy>\r
7984                   <id provider="uniprot">188709</id>\r
7985                   <scientific_name>Thermotogaceae</scientific_name>\r
7986                   <rank>family</rank>\r
7987                 </taxonomy>\r
7988                 <clade>\r
7989                   <name>b_222</name>\r
7990                   <clade>\r
7991                     <taxonomy>\r
7992                       <id provider="uniprot">381764</id>\r
7993                       <code>FERNB</code>\r
7994                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
7995                     </taxonomy>\r
7996                   </clade>\r
7997                   <clade>\r
7998                     <taxonomy>\r
7999                       <id provider="uniprot">416591</id>\r
8000                       <code>THELT</code>\r
8001                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
8002                     </taxonomy>\r
8003                   </clade>\r
8004                 </clade>\r
8005                 <clade>\r
8006                   <taxonomy>\r
8007                     <id provider="uniprot">2336</id>\r
8008                     <code>THEMA</code>\r
8009                     <scientific_name>Thermotoga maritima</scientific_name>\r
8010                     <rank>species</rank>\r
8011                   </taxonomy>\r
8012                 </clade>\r
8013               </clade>\r
8014             </clade>\r
8015           </clade>\r
8016           <clade>\r
8017             <name>b_267</name>\r
8018             <clade>\r
8019               <name>b_263</name>\r
8020               <clade>\r
8021                 <name>b_251</name>\r
8022                 <clade>\r
8023                   <name>b_249</name>\r
8024                   <clade>\r
8025                     <name>b_245</name>\r
8026                     <clade>\r
8027                       <name>b_237</name>\r
8028                       <clade>\r
8029                         <name>b_233</name>\r
8030                         <taxonomy>\r
8031                           <id provider="uniprot">31969</id>\r
8032                           <scientific_name>Mollicutes</scientific_name>\r
8033                           <rank>class</rank>\r
8034                         </taxonomy>\r
8035                         <clade>\r
8036                           <name>b_231</name>\r
8037                           <clade>\r
8038                             <name>b_229</name>\r
8039                             <taxonomy>\r
8040                               <scientific_name>Mycoplasma</scientific_name>\r
8041                             </taxonomy>\r
8042                             <clade>\r
8043                               <taxonomy>\r
8044                                 <id provider="uniprot">2097</id>\r
8045                                 <code>MYCGE</code>\r
8046                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
8047                                 <rank>species</rank>\r
8048                               </taxonomy>\r
8049                             </clade>\r
8050                             <clade>\r
8051                               <taxonomy>\r
8052                                 <id provider="uniprot">2104</id>\r
8053                                 <code>MYCPN</code>\r
8054                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
8055                                 <rank>species</rank>\r
8056                               </taxonomy>\r
8057                             </clade>\r
8058                           </clade>\r
8059                           <clade>\r
8060                             <taxonomy>\r
8061                               <id provider="uniprot">2151</id>\r
8062                               <code>MESFL</code>\r
8063                               <scientific_name>Mesoplasma florum</scientific_name>\r
8064                               <synonym>Acholeplasma florum</synonym>\r
8065                               <rank>species</rank>\r
8066                             </taxonomy>\r
8067                           </clade>\r
8068                         </clade>\r
8069                         <clade>\r
8070                           <taxonomy>\r
8071                             <id provider="uniprot">134821</id>\r
8072                             <code>UREPA</code>\r
8073                             <scientific_name>Ureaplasma parvum</scientific_name>\r
8074                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
8075                             <rank>species</rank>\r
8076                           </taxonomy>\r
8077                         </clade>\r
8078                       </clade>\r
8079                       <clade>\r
8080                         <name>b_236</name>\r
8081                         <taxonomy>\r
8082                           <id provider="uniprot">137</id>\r
8083                           <scientific_name>Spirochaetaceae</scientific_name>\r
8084                           <rank>family</rank>\r
8085                         </taxonomy>\r
8086                         <clade>\r
8087                           <taxonomy>\r
8088                             <id provider="uniprot">139</id>\r
8089                             <code>BORBU</code>\r
8090                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
8091                             <common_name>Lyme disease spirochete</common_name>\r
8092                             <rank>species</rank>\r
8093                           </taxonomy>\r
8094                         </clade>\r
8095                         <clade>\r
8096                           <taxonomy>\r
8097                             <id provider="uniprot">160</id>\r
8098                             <code>TREPA</code>\r
8099                             <scientific_name>Treponema pallidum</scientific_name>\r
8100                             <rank>species</rank>\r
8101                           </taxonomy>\r
8102                         </clade>\r
8103                       </clade>\r
8104                     </clade>\r
8105                     <clade>\r
8106                       <name>b_244</name>\r
8107                       <clade>\r
8108                         <name>b_242</name>\r
8109                         <taxonomy>\r
8110                           <id provider="uniprot">1113537</id>\r
8111                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
8112                         </taxonomy>\r
8113                         <clade>\r
8114                           <name>b_240</name>\r
8115                           <clade>\r
8116                             <taxonomy>\r
8117                               <id provider="uniprot">83558</id>\r
8118                               <code>CHLPN</code>\r
8119                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
8120                               <synonym>Chlamydophila pneumoniae</synonym>\r
8121                               <rank>species</rank>\r
8122                             </taxonomy>\r
8123                           </clade>\r
8124                           <clade>\r
8125                             <taxonomy>\r
8126                               <id provider="uniprot">264202</id>\r
8127                               <code>CHLFF</code>\r
8128                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
8129                             </taxonomy>\r
8130                           </clade>\r
8131                         </clade>\r
8132                         <clade>\r
8133                           <taxonomy>\r
8134                             <id provider="uniprot">83560</id>\r
8135                             <code>CHLMU</code>\r
8136                             <scientific_name>Chlamydia muridarum</scientific_name>\r
8137                             <rank>species</rank>\r
8138                           </taxonomy>\r
8139                         </clade>\r
8140                       </clade>\r
8141                       <clade>\r
8142                         <taxonomy>\r
8143                           <id provider="uniprot">785</id>\r
8144                           <code>RICTY</code>\r
8145                           <scientific_name>Rickettsia typhi</scientific_name>\r
8146                           <rank>species</rank>\r
8147                         </taxonomy>\r
8148                       </clade>\r
8149                     </clade>\r
8150                   </clade>\r
8151                   <clade>\r
8152                     <taxonomy>\r
8153                       <id provider="uniprot">28211</id>\r
8154                       <scientific_name>Alphaproteobacteria</scientific_name>\r
8155                       <rank>class</rank>\r
8156                     </taxonomy>\r
8157                     <clade>\r
8158                       <taxonomy>\r
8159                         <id provider="uniprot">38323</id>\r
8160                         <code>BARHE</code>\r
8161                         <scientific_name>Bartonella henselae</scientific_name>\r
8162                         <synonym>Rochalimaea henselae</synonym>\r
8163                         <rank>species</rank>\r
8164                       </taxonomy>\r
8165                     </clade>\r
8166                     <clade>\r
8167                       <taxonomy>\r
8168                         <id provider="uniprot">198252</id>\r
8169                         <code>PELUB</code>\r
8170                         <scientific_name>Pelagibacter ubique</scientific_name>\r
8171                         <rank>species</rank>\r
8172                       </taxonomy>\r
8173                     </clade>\r
8174                     <clade>\r
8175                       <taxonomy>\r
8176                         <id provider="uniprot">780</id>\r
8177                         <scientific_name>Rickettsia</scientific_name>\r
8178                         <rank>genus</rank>\r
8179                       </taxonomy>\r
8180                       <clade>\r
8181                         <taxonomy>\r
8182                           <id provider="uniprot">391896</id>\r
8183                           <code>RICB8</code>\r
8184                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
8185                         </taxonomy>\r
8186                       </clade>\r
8187                       <clade>\r
8188                         <taxonomy>\r
8189                           <id provider="uniprot">452659</id>\r
8190                           <code>RICRO</code>\r
8191                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
8192                           <rank>strain</rank>\r
8193                         </taxonomy>\r
8194                       </clade>\r
8195                     </clade>\r
8196                   </clade>\r
8197                 </clade>\r
8198                 <clade>\r
8199                   <taxonomy>\r
8200                     <id provider="uniprot">263</id>\r
8201                     <code>FRATU</code>\r
8202                     <scientific_name>Francisella tularensis</scientific_name>\r
8203                     <rank>species</rank>\r
8204                   </taxonomy>\r
8205                 </clade>\r
8206               </clade>\r
8207               <clade>\r
8208                 <name>b_262</name>\r
8209                 <clade>\r
8210                   <name>b_260</name>\r
8211                   <clade>\r
8212                     <name>b_258</name>\r
8213                     <taxonomy>\r
8214                       <id provider="uniprot">186826</id>\r
8215                       <scientific_name>Lactobacillales</scientific_name>\r
8216                       <rank>order</rank>\r
8217                     </taxonomy>\r
8218                     <clade>\r
8219                       <name>b_256</name>\r
8220                       <taxonomy>\r
8221                         <id provider="uniprot">1300</id>\r
8222                         <scientific_name>Streptococcaceae</scientific_name>\r
8223                         <rank>family</rank>\r
8224                       </taxonomy>\r
8225                       <clade>\r
8226                         <name>b_254</name>\r
8227                         <taxonomy>\r
8228                           <id provider="uniprot">1301</id>\r
8229                           <scientific_name>Streptococcus</scientific_name>\r
8230                           <rank>genus</rank>\r
8231                         </taxonomy>\r
8232                         <clade>\r
8233                           <taxonomy>\r
8234                             <id provider="uniprot">1313</id>\r
8235                             <code>STRPN</code>\r
8236                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
8237                             <rank>species</rank>\r
8238                           </taxonomy>\r
8239                         </clade>\r
8240                         <clade>\r
8241                           <taxonomy>\r
8242                             <id provider="uniprot">1314</id>\r
8243                             <code>STRPY</code>\r
8244                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
8245                             <rank>species</rank>\r
8246                           </taxonomy>\r
8247                         </clade>\r
8248                       </clade>\r
8249                       <clade>\r
8250                         <taxonomy>\r
8251                           <id provider="uniprot">1360</id>\r
8252                           <code>LACLA</code>\r
8253                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
8254                           <synonym>Streptococcus lactis</synonym>\r
8255                           <rank>subspecies</rank>\r
8256                         </taxonomy>\r
8257                       </clade>\r
8258                     </clade>\r
8259                     <clade>\r
8260                       <taxonomy>\r
8261                         <id provider="uniprot">1579</id>\r
8262                         <code>LACAC</code>\r
8263                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
8264                         <rank>species</rank>\r
8265                       </taxonomy>\r
8266                     </clade>\r
8267                   </clade>\r
8268                   <clade>\r
8269                     <taxonomy>\r
8270                       <id provider="uniprot">216816</id>\r
8271                       <code>BIFLO</code>\r
8272                       <scientific_name>Bifidobacterium longum</scientific_name>\r
8273                       <rank>species</rank>\r
8274                     </taxonomy>\r
8275                   </clade>\r
8276                 </clade>\r
8277                 <clade>\r
8278                   <taxonomy>\r
8279                     <id provider="uniprot">851</id>\r
8280                     <code>FUSNU</code>\r
8281                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
8282                     <rank>species</rank>\r
8283                   </taxonomy>\r
8284                 </clade>\r
8285               </clade>\r
8286             </clade>\r
8287             <clade>\r
8288               <name>b_266</name>\r
8289               <taxonomy>\r
8290                 <id provider="uniprot">61434</id>\r
8291                 <scientific_name>Dehalococcoides</scientific_name>\r
8292                 <rank>genus</rank>\r
8293               </taxonomy>\r
8294               <clade>\r
8295                 <taxonomy>\r
8296                   <id provider="uniprot">243164</id>\r
8297                   <code>DEHE1</code>\r
8298                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
8299                 </taxonomy>\r
8300               </clade>\r
8301               <clade>\r
8302                 <taxonomy>\r
8303                   <id provider="uniprot">216389</id>\r
8304                   <code>DEHSB</code>\r
8305                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
8306                   <rank>species</rank>\r
8307                 </taxonomy>\r
8308               </clade>\r
8309             </clade>\r
8310           </clade>\r
8311         </clade>\r
8312         <clade>\r
8313           <name>b_277</name>\r
8314           <taxonomy>\r
8315             <id provider="uniprot">29547</id>\r
8316             <scientific_name>Epsilonproteobacteria</scientific_name>\r
8317             <rank>class</rank>\r
8318           </taxonomy>\r
8319           <clade>\r
8320             <name>b_273</name>\r
8321             <clade>\r
8322               <taxonomy>\r
8323                 <id provider="uniprot">387092</id>\r
8324                 <code>NITSB</code>\r
8325                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
8326                 <rank>species</rank>\r
8327               </taxonomy>\r
8328             </clade>\r
8329             <clade>\r
8330               <taxonomy>\r
8331                 <id provider="uniprot">387093</id>\r
8332                 <code>SULNB</code>\r
8333                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
8334                 <rank>species</rank>\r
8335               </taxonomy>\r
8336             </clade>\r
8337           </clade>\r
8338           <clade>\r
8339             <name>b_276</name>\r
8340             <taxonomy>\r
8341               <id provider="uniprot">213849</id>\r
8342               <scientific_name>Campylobacterales</scientific_name>\r
8343               <rank>order</rank>\r
8344             </taxonomy>\r
8345             <clade>\r
8346               <taxonomy>\r
8347                 <id provider="uniprot">197</id>\r
8348                 <code>CAMJE</code>\r
8349                 <scientific_name>Campylobacter jejuni</scientific_name>\r
8350                 <rank>species</rank>\r
8351               </taxonomy>\r
8352             </clade>\r
8353             <clade>\r
8354               <taxonomy>\r
8355                 <id provider="uniprot">357544</id>\r
8356                 <code>HELPH</code>\r
8357                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
8358               </taxonomy>\r
8359             </clade>\r
8360           </clade>\r
8361         </clade>\r
8362       </clade>\r
8363       <clade>\r
8364         <taxonomy>\r
8365           <id provider="uniprot">224324</id>\r
8366           <code>AQUAE</code>\r
8367           <scientific_name>Aquifex aeolicus (strain VF5)</scientific_name>\r
8368           <rank>strain</rank>\r
8369         </taxonomy>\r
8370       </clade>\r
8371     </clade>\r
8372   </clade>\r
8373 </phylogeny>\r
8374 </phyloxml>