forester/data/tol_173_no_ecdy.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
   3    xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.00/phyloxml.xsd"
   4    xmlns="http://www.phyloxml.org">
   5    <phylogeny rooted="true" rerootable="false">
   6       <clade>
   7          <name>cellular_organisms</name>
   8          <clade>
   9             <name>Bacteria</name>
  10             <reference doi="10.1101/gr.187002"/>
  11             <clade>
  12                <name>Spirochaetes</name>
  13                <clade>
  14                   <name>BORBU</name>
  15                </clade>
  16                <clade>
  17                   <name>TREPA</name>
  18                </clade>
  19             </clade>
  20             <clade>
  21                <name>b_1</name>
  22                <clade>
  23                   <name>Chlamydiales</name>
  24                   <clade>
  25                      <name>CHLFF</name>
  26                   </clade>
  27                   <clade>
  28                      <name>Chlamydia</name>
  29                      <clade>
  30                         <name>CHLMU</name>
  31                      </clade>
  32                      <clade>
  33                         <name>CHLPN</name>
  34                      </clade>
  35                   </clade>
  36                </clade>
  37                <clade>
  38                   <name>b_2</name>
  39                   <clade>
  40                      <name>hyperthermophilic</name>
  41                      <clade>
  42                         <name>AQUAE</name>
  43                      </clade>
  44                      <clade>
  45                         <name>THEMA</name>
  46                      </clade>
  47                   </clade>
  48                   <clade>
  49                      <name>b_3</name>
  50                      <clade>
  51                         <name>Proteobacteria</name>
  52                         <clade>
  53                            <name>Epsilonproteobacteria</name>
  54                            <clade>
  55                               <name>NITSB</name>
  56                            </clade>
  57                            <clade>
  58                               <name>Campylobacterales</name>
  59                               <clade>
  60                                  <name>HELPH</name>
  61                               </clade>
  62                               <clade>
  63                                  <name>CAMJE</name>
  64                               </clade>
  65                            </clade>
  66                         </clade>
  67                         <clade>
  68                            <name>b_5</name>
  69                            <clade>
  70                               <name>Alphaproteobacteria</name>
  71                               <clade>
  72                                  <name>RICTY</name>
  73                               </clade>
  74                               <clade>
  75                                  <name>CAUCR</name>
  76                               </clade>
  77                            </clade>
  78                            <clade>
  79                               <name>b_4</name>
  80                               <clade>
  81                                  <name>Betaproteobacteria</name>
  82                                  <clade>
  83                                     <name>NEIME</name>
  84                                  </clade>
  85                                  <clade>
  86                                     <name>RALME</name>
  87                                  </clade>
  88                               </clade>
  89                               <clade>
  90                                  <name>Gammaproteobacteria</name>
  91                                  <clade>
  92                                     <name>XYLFT</name>
  93                                  </clade>
  94                                  <clade>
  95                                     <name>b_6</name>
  96                                     <clade>
  97                                        <name>PSEAE</name>
  98                                     </clade>
  99                                     <clade>
 100                                        <name>b_7</name>
 101                                        <clade>
 102                                           <name>b_8</name>
 103                                           <clade>
 104                                              <name>ECOLI</name>
 105                                           </clade>
 106                                           <clade>
 107                                              <name>VIBCH</name>
 108                                           </clade>
 109                                        </clade>
 110                                        <clade>
 111                                           <name>Pasteurellales</name>
 112                                           <clade>
 113                                              <name>PASMU</name>
 114                                           </clade>
 115                                           <clade>
 116                                              <name>HAEIN</name>
 117                                           </clade>
 118                                        </clade>
 119                                     </clade>
 120                                  </clade>
 121                               </clade>
 122                            </clade>
 123                         </clade>
 124                      </clade>
 125                      <clade>
 126                         <name>b_9</name>
 127                         <clade>
 128                            <name>Firmicutes</name>
 129                            <clade>
 130                               <name>Mycoplasmataceae</name>
 131                               <clade>
 132                                  <name>UREPA</name>
 133                               </clade>
 134                               <clade>
 135                                  <name>Mycoplasma</name>
 136                                  <clade>
 137                                     <name>MYCPN</name>
 138                                  </clade>
 139                                  <clade>
 140                                     <name>MYCGE</name>
 141                                  </clade>
 142                               </clade>
 143                            </clade>
 144                            <clade>
 145                               <name>b_10</name>
 146                               <clade>
 147                                  <name>Lactobacillales</name>
 148                                  <clade>
 149                                     <name>STRPY</name>
 150                                  </clade>
 151                                  <clade>
 152                                     <name>LACLA</name>
 153                                  </clade>
 154                               </clade>
 155                               <clade>
 156                                  <name>Bacillales</name>
 157                                  <clade>
 158                                     <name>STAAU</name>
 159                                  </clade>
 160                                  <clade>
 161                                     <name>Bacillaceae</name>
 162                                     <clade>
 163                                        <name>BACSU</name>
 164                                     </clade>
 165                                     <clade>
 166                                        <name>BACHD</name>
 167                                     </clade>
 168                                  </clade>
 169                               </clade>
 170                            </clade>
 171                         </clade>
 172                         <clade>
 173                            <name>b_11</name>
 174                            <clade>
 175                               <name>Cyanobacteria</name>
 176                               <clade>
 177                                  <name>Synechococcus</name>
 178                                  <clade>
 179                                     <name>SYNEL</name>
 180                                  </clade>
 181                                  <clade>
 182                                     <name>SYNS3</name>
 183                                  </clade>
 184                               </clade>
 185                               <clade>
 186                                  <name>Nostocaceae</name>
 187                                  <clade>
 188                                     <name>NOSS7</name>
 189                                  </clade>
 190                                  <clade>
 191                                     <name>ANAVA</name>
 192                                  </clade>
 193                               </clade>
 194                            </clade>
 195                            <clade>
 196                               <name>b_12</name>
 197                               <clade>
 198                                  <name>DEIRA</name>
 199                               </clade>
 200                               <clade>
 201                                  <name>Actinobacteria</name>
 202                                  <clade>
 203                                     <name>STRCO</name>
 204                                  </clade>
 205                                  <clade>
 206                                     <name>Mycobacterium</name>
 207                                     <clade>
 208                                        <name>MYCTU</name>
 209                                     </clade>
 210                                     <clade>
 211                                        <name>MYCLE</name>
 212                                     </clade>
 213                                  </clade>
 214                               </clade>
 215                            </clade>
 216                         </clade>
 217                      </clade>
 218                   </clade>
 219                </clade>
 220             </clade>
 221          </clade>
 222          <clade>
 223             <name>Archaea_Eukaryota</name>
 224             <clade>
 225                <name>Archaea</name>
 226                <reference doi="10.1186/1471-2164-8-86"/>
 227                <clade>
 228                   <name>Crenarchaeota</name>
 229                   <clade>
 230                      <name>PYRAE</name>
 231                   </clade>
 232                   <clade>
 233                      <name>a_14</name>
 234                      <clade>
 235                         <name>AERPE</name>
 236                      </clade>
 237                      <clade>
 238                         <name>a_15</name>
 239                         <clade>
 240                            <name>SULSO</name>
 241                         </clade>
 242                         <clade>
 243                            <name>a_16</name>
 244                            <clade>
 245                               <name>SULTO</name>
 246                            </clade>
 247                            <clade>
 248                               <name>SULAC</name>
 249                            </clade>
 250                         </clade>
 251                      </clade>
 252                   </clade>
 253                </clade>
 254                <clade>
 255                   <name>Euryarchaeota</name>
 256                   <clade>
 257                      <name>Thermococci</name>
 258                      <clade>
 259                         <name>THEKO</name>
 260                      </clade>
 261                      <clade>
 262                         <name>a_12</name>
 263                         <clade>
 264                            <name>PYRFU</name>
 265                         </clade>
 266                         <clade>
 267                            <name>a_13</name>
 268                            <clade>
 269                               <name>PYRAB</name>
 270                            </clade>
 271                            <clade>
 272                               <name>PYRHO</name>
 273                            </clade>
 274                         </clade>
 275                      </clade>
 276                   </clade>
 277                   <clade>
 278                      <name>a_1</name>
 279                      <clade>
 280                         <name>METKA</name>
 281                      </clade>
 282                      <clade>
 283                         <name>a_2</name>
 284                         <clade>
 285                            <name>a_11</name>
 286                            <clade>
 287                               <name>Methanococcales</name>
 288                               <clade>
 289                                  <name>METJA</name>
 290                               </clade>
 291                               <clade>
 292                                  <name>METMP</name>
 293                               </clade>
 294                            </clade>
 295                            <clade>
 296                               <name>Methanobacteria</name>
 297                               <clade>
 298                                  <name>METTH</name>
 299                               </clade>
 300                               <clade>
 301                                  <name>METST</name>
 302                               </clade>
 303                            </clade>
 304                         </clade>
 305                         <clade>
 306                            <name>a_3</name>
 307                            <clade>
 308                               <name>Thermoplasmata</name>
 309                               <clade>
 310                                  <name>PICTO</name>
 311                               </clade>
 312                               <clade>
 313                                  <name>a_10</name>
 314                                  <clade>
 315                                     <name>THEVO</name>
 316                                  </clade>
 317                                  <clade>
 318                                     <name>THEAC</name>
 319                                  </clade>
 320                               </clade>
 321                            </clade>
 322                            <clade>
 323                               <name>a_4</name>
 324                               <clade>
 325                                  <name>ARCFU</name>
 326                               </clade>
 327                               <clade>
 328                                  <name>a_5</name>
 329                                  <clade>
 330                                     <name>Halobacteria</name>
 331                                     <clade>
 332                                        <name>HALSP</name>
 333                                     </clade>
 334                                     <clade>
 335                                        <name>a_17</name>
 336                                        <clade>
 337                                           <name>NATPH</name>
 338                                        </clade>
 339                                        <clade>
 340                                           <name>HALMA</name>
 341                                        </clade>
 342                                     </clade>
 343                                  </clade>
 344                                  <clade>
 345                                     <name>a_6</name>
 346                                     <clade>
 347                                        <name>METHU</name>
 348                                     </clade>
 349                                     <clade>
 350                                        <name>Methanosarcinales</name>
 351                                        <clade>
 352                                           <name>METTP</name>
 353                                        </clade>
 354                                        <clade>
 355                                           <name>a_7</name>
 356                                           <clade>
 357                                              <name>METBU</name>
 358                                           </clade>
 359                                           <clade>
 360                                              <name>a_8</name>
 361                                              <clade>
 362                                                 <name>METBF</name>
 363                                              </clade>
 364                                              <clade>
 365                                                 <name>a_9</name>
 366                                                 <clade>
 367                                                    <name>METMA</name>
 368                                                 </clade>
 369                                                 <clade>
 370                                                    <name>METAC</name>
 371                                                 </clade>
 372                                              </clade>
 373                                           </clade>
 374                                        </clade>
 375                                     </clade>
 376                                  </clade>
 377                               </clade>
 378                            </clade>
 379                         </clade>
 380                      </clade>
 381                   </clade>
 382                </clade>
 383             </clade>
 384             <clade>
 385                <name>Eukaryota</name>
 386                <clade>
 387                   <name>Bikonta</name>
 388                   <reference doi="10.1099/ijs.0.63216-0"/>
 389                   <clade>
 390                      <name>Excavata</name>
 391                      <reference doi="10.1126/science.1143837"/>
 392                      <clade>
 393                         <name>GIALA</name>
 394                      </clade>
 395                      <clade>
 396                         <name>Kinetoplastida_Heterolobosea</name>
 397                         <clade>
 398                            <name>NAEGR</name>
 399                         </clade>
 400                         <clade>
 401                            <name>Kinetoplastida</name>
 402                            <clade>
 403                               <name>LEIMA</name>
 404                            </clade>
 405                            <clade>
 406                               <name>TRYBB</name>
 407                            </clade>
 408                         </clade>
 409                      </clade>
 410                   </clade>
 411                   <clade>
 412                      <name>Corticata</name>
 413                      <clade>
 414                         <name>Chromalveolate</name>
 415                         <reference doi="10.1073/pnas.0712248105"/>
 416                         <clade>
 417                            <name>EMIHU</name>
 418                         </clade>
 419                         <clade>
 420                            <name>Heterokonta_Alveolata</name>
 421                            <clade>
 422                               <name>Heterokonta</name>
 423                               <clade>
 424                                  <name>Bacillariophyta</name>
 425                                  <clade>
 426                                     <name>THAPS</name>
 427                                  </clade>
 428                                  <clade>
 429                                     <name>PHATR</name>
 430                                  </clade>
 431                               </clade>
 432                               <clade>
 433                                  <name>Oomycetes</name>
 434                                  <clade>
 435                                     <name>PHYIN</name>
 436                                  </clade>
 437                                  <clade>
 438                                     <name>PHYRM</name>
 439                                  </clade>
 440                                  <clade>
 441                                     <name>PHYSO</name>
 442                                  </clade>
 443                               </clade>
 444                            </clade>
 445                            <clade>
 446                               <name>Alveolata</name>
 447                               <clade>
 448                                  <name>Ciliophora</name>
 449                                  <clade>
 450                                     <name>TETTH</name>
 451                                  </clade>
 452                                  <clade>
 453                                     <name>PARTE</name>
 454                                  </clade>
 455                               </clade>
 456                               <clade>
 457                                  <name>Apicomplexa</name>
 458                                  <clade>
 459                                     <name>Coccidia</name>
 460                                     <clade>
 461                                        <name>TOXGO</name>
 462                                     </clade>
 463                                     <clade>
 464                                        <name>Cryptosporidium</name>
 465                                        <clade>
 466                                           <name>CRYHO</name>
 467                                        </clade>
 468                                        <clade>
 469                                           <name>CRYPV</name>
 470                                        </clade>
 471                                     </clade>
 472                                  </clade>
 473                                  <clade>
 474                                     <name>Aconoidasida</name>
 475                                     <clade>
 476                                        <name>Plasmodium</name>
 477                                        <clade>
 478                                           <name>PLAFA</name>
 479                                        </clade>
 480                                        <clade>
 481                                           <name>PLAYO</name>
 482                                        </clade>
 483                                     </clade>
 484                                     <clade>
 485                                        <name>Theileria</name>
 486                                        <clade>
 487                                           <name>THEPA</name>
 488                                        </clade>
 489                                        <clade>
 490                                           <name>THEAN</name>
 491                                        </clade>
 492                                     </clade>
 493                                  </clade>
 494                               </clade>
 495                            </clade>
 496                         </clade>
 497                      </clade>
 498                      <clade>
 499                         <name>Archaeplastida</name>
 500                         <clade>
 501                            <name>CYAME</name>
 502                         </clade>
 503                         <clade>
 504                            <name>Viridiplantae</name>
 505                            <reference/>
 506                            <clade>
 507                               <name>Chlorophyceae_Prasinophyceae</name>
 508                               <clade>
 509                                  <name>Chlorophyceae</name>
 510                                  <clade>
 511                                     <name>CHLRE</name>
 512                                  </clade>
 513                                  <clade>
 514                                     <name>VOLCA</name>
 515                                  </clade>
 516                               </clade>
 517                               <clade>
 518                                  <name>Prasinophyceae</name>
 519                                  <clade>
 520                                     <name>Ostreococcus</name>
 521                                     <clade>
 522                                        <name>OSTLU</name>
 523                                     </clade>
 524                                     <clade>
 525                                        <name>OSTTA</name>
 526                                     </clade>
 527                                  </clade>
 528                                  <clade>
 529                                     <name>Micromonas</name>
 530                                     <clade>
 531                                        <name>MICPU</name>
 532                                     </clade>
 533                                     <clade>
 534                                        <name>MIC99</name>
 535                                     </clade>
 536                                  </clade>
 537                               </clade>
 538                            </clade>
 539                            <clade>
 540                               <name>Embryophyta</name>
 541                               <clade>
 542                                  <name>PHYPA</name>
 543                               </clade>
 544                               <clade>
 545                                  <name>Tracheophyta</name>
 546                                  <clade>
 547                                     <name>SELMO</name>
 548                                  </clade>
 549                                  <clade>
 550                                     <name>Magnoliophyta</name>
 551                                     <clade>
 552                                        <name>Eudicotyledons</name>
 553                                        <clade>
 554                                           <name>ARATH</name>
 555                                        </clade>
 556                                        <clade>
 557                                           <name>POPTR</name>
 558                                        </clade>
 559                                        <clade>
 560                                           <name>VITVI</name>
 561                                        </clade>
 562                                     </clade>
 563                                     <clade>
 564                                        <name>Poales</name>
 565                                        <clade>
 566                                           <name>SORBI</name>
 567                                        </clade>
 568                                        <clade>
 569                                           <name>Oryza</name>
 570                                           <clade>
 571                                              <name>ORYSJ</name>
 572                                           </clade>
 573                                           <clade>
 574                                              <name>ORYSA</name>
 575                                           </clade>
 576                                        </clade>
 577                                     </clade>
 578                                  </clade>
 579                               </clade>
 580                            </clade>
 581                         </clade>
 582                      </clade>
 583                   </clade>
 584                </clade>
 585                <clade>
 586                   <name>Unikonta</name>
 587                   <clade>
 588                      <name>Amoebozoa</name>
 589                      <clade>
 590                         <name>DICDI</name>
 591                      </clade>
 592                      <clade>
 593                         <name>ENTHI</name>
 594                      </clade>
 595                   </clade>
 596                   <clade>
 597                      <name>Opisthokonta</name>
 598                      <clade>
 599                         <name>Fungi</name>
 600                         <reference doi="10.1186/1471-2148-6-99"/>
 601                         <clade>
 602                            <name>Mucoromycotina</name>
 603                            <clade>
 604                               <name>PHYBL</name>
 605                            </clade>
 606                            <clade>
 607                               <name>RHIOR</name>
 608                            </clade>
 609                         </clade>
 610                         <clade>
 611                            <name>Dikarya</name>
 612                            <clade>
 613                               <name>Basidiomycota</name>
 614                               <clade>
 615                                  <name>USTMA</name>
 616                               </clade>
 617                               <clade>
 618                                  <name>Agaricomycotina</name>
 619                                  <clade>
 620                                     <name>CRYNE</name>
 621                                  </clade>
 622                                  <clade>
 623                                     <name>Agaricomycetes</name>
 624                                     <clade>
 625                                        <name>PHACH</name>
 626                                     </clade>
 627                                     <clade>
 628                                        <name>Agaricales</name>
 629                                        <clade>
 630                                           <name>COPCI</name>
 631                                        </clade>
 632                                        <clade>
 633                                           <name>LACBI</name>
 634                                        </clade>
 635                                     </clade>
 636                                  </clade>
 637                               </clade>
 638                            </clade>
 639                            <clade>
 640                               <name>Ascomycota</name>
 641                               <clade>
 642                                  <name>SCHPO</name>
 643                               </clade>
 644                               <clade>
 645                                  <name>f_1</name>
 646                                  <clade>
 647                                     <name>Pezizomycotina</name>
 648                                     <clade>
 649                                        <name>Eurotiomycetes</name>
 650                                        <clade>
 651                                           <name>f_2</name>
 652                                           <clade>
 653                                              <name>AJECA</name>
 654                                           </clade>
 655                                           <clade>
 656                                              <name>f_3</name>
 657                                              <clade>
 658                                                 <name>UNCRE</name>
 659                                              </clade>
 660                                              <clade>
 661                                                 <name>COCIM</name>
 662                                              </clade>
 663                                           </clade>
 664                                        </clade>
 665                                        <clade>
 666                                           <name>Trichocomaceae</name>
 667                                           <clade>
 668                                              <name>f_4</name>
 669                                              <clade>
 670                                                 <name>EMENI</name>
 671                                              </clade>
 672                                              <clade>
 673                                                 <name>ASPFU</name>
 674                                              </clade>
 675                                           </clade>
 676                                           <clade>
 677                                              <name>f_5</name>
 678                                              <clade>
 679                                                 <name>ASPOR</name>
 680                                              </clade>
 681                                              <clade>
 682                                                 <name>ASPTE</name>
 683                                              </clade>
 684                                           </clade>
 685                                        </clade>
 686                                     </clade>
 687                                     <clade>
 688                                        <name>f_6</name>
 689                                        <clade>
 690                                           <name>PHANO</name>
 691                                        </clade>
 692                                        <clade>
 693                                           <name>f_7</name>
 694                                           <clade>
 695                                              <name>Leotiomycetes</name>
 696                                              <clade>
 697                                                 <name>BOTFB</name>
 698                                              </clade>
 699                                              <clade>
 700                                                 <name>SCLSC</name>
 701                                              </clade>
 702                                           </clade>
 703                                           <clade>
 704                                              <name>Sordariomycetes</name>
 705                                              <clade>
 706                                                 <name>Hypocreales</name>
 707                                                 <clade>
 708                                                    <name>TRIRE</name>
 709                                                 </clade>
 710                                                 <clade>
 711                                                    <name>Gibberella</name>
 712                                                    <clade>
 713                                                       <name>GIBMO</name>
 714                                                    </clade>
 715                                                    <clade>
 716                                                       <name>GIBZE</name>
 717                                                    </clade>
 718                                                 </clade>
 719                                              </clade>
 720                                              <clade>
 721                                                 <name>f_8</name>
 722                                                 <clade>
 723                                                    <name>MAGGR</name>
 724                                                 </clade>
 725                                                 <clade>
 726                                                    <name>f_9</name>
 727                                                    <clade>
 728                                                       <name>NEUCR</name>
 729                                                    </clade>
 730                                                    <clade>
 731                                                       <name>f_10</name>
 732                                                       <clade>
 733                                                          <name>PODAN</name>
 734                                                       </clade>
 735                                                       <clade>
 736                                                          <name>CHAGB</name>
 737                                                       </clade>
 738                                                    </clade>
 739                                                 </clade>
 740                                              </clade>
 741                                           </clade>
 742                                        </clade>
 743                                     </clade>
 744                                  </clade>
 745                                  <clade>
 746                                     <name>Saccharomycotina</name>
 747                                     <clade>
 748                                        <name>YARLI</name>
 749                                     </clade>
 750                                     <clade>
 751                                        <name>f_11</name>
 752                                        <clade>
 753                                           <name>f_12</name>
 754                                           <clade>
 755                                              <name>f_13</name>
 756                                              <clade>
 757                                                 <name>CLALS</name>
 758                                              </clade>
 759                                              <clade>
 760                                                 <name>f_14</name>
 761                                                 <clade>
 762                                                    <name>PICGU</name>
 763                                                 </clade>
 764                                                 <clade>
 765                                                    <name>DEBHA</name>
 766                                                 </clade>
 767                                              </clade>
 768                                           </clade>
 769                                           <clade>
 770                                              <name>Candida</name>
 771                                              <clade>
 772                                                 <name>CANPA</name>
 773                                              </clade>
 774                                              <clade>
 775                                                 <name>f_15</name>
 776                                                 <clade>
 777                                                    <name>CANTR</name>
 778                                                 </clade>
 779                                                 <clade>
 780                                                    <name>f_16</name>
 781                                                    <clade>
 782                                                       <name>CANDU</name>
 783                                                    </clade>
 784                                                    <clade>
 785                                                       <name>CANAL</name>
 786                                                    </clade>
 787                                                 </clade>
 788                                              </clade>
 789                                           </clade>
 790                                        </clade>
 791                                        <clade>
 792                                           <name>f_17</name>
 793                                           <clade>
 794                                              <name>f_18</name>
 795                                              <clade>
 796                                                 <name>f_19</name>
 797                                                 <clade>
 798                                                    <name>KLUWA</name>
 799                                                 </clade>
 800                                                 <clade>
 801                                                    <name>SACKL</name>
 802                                                 </clade>
 803                                              </clade>
 804                                              <clade>
 805                                                 <name>f_20</name>
 806                                                 <clade>
 807                                                    <name>ASHGO</name>
 808                                                 </clade>
 809                                                 <clade>
 810                                                    <name>KLULA</name>
 811                                                 </clade>
 812                                              </clade>
 813                                           </clade>
 814                                           <clade>
 815                                              <name>Saccharomyces</name>
 816                                              <clade>
 817                                                 <name>SACCA</name>
 818                                              </clade>
 819                                              <clade>
 820                                                 <name>f_21</name>
 821                                                 <clade>
 822                                                    <name>SACBA</name>
 823                                                 </clade>
 824                                                 <clade>
 825                                                    <name>f_22</name>
 826                                                    <clade>
 827                                                       <name>SACKU</name>
 828                                                    </clade>
 829                                                    <clade>
 830                                                       <name>f_23</name>
 831                                                       <clade>
 832                                                          <name>SACMI</name>
 833                                                       </clade>
 834                                                       <clade>
 835                                                          <name>f_24</name>
 836                                                          <clade>
 837                                                             <name>SACPA</name>
 838                                                          </clade>
 839                                                          <clade>
 840                                                             <name>YEAST</name>
 841                                                          </clade>
 842                                                       </clade>
 843                                                    </clade>
 844                                                 </clade>
 845                                              </clade>
 846                                           </clade>
 847                                        </clade>
 848                                     </clade>
 849                                  </clade>
 850                               </clade>
 851                            </clade>
 852                         </clade>
 853                      </clade>
 854                      <clade>
 855                         <name>Metazoa_Choanoflagellata</name>
 856                         <clade>
 857                            <name>MONBE</name>
 858                         </clade>
 859                         <clade>
 860                            <name>Metazoa</name>
 861                            <clade>
 862                               <name>TRIAD</name>
 863                               <reference doi="10.1073/pnas.0602076103"/>
 864                            </clade>
 865                            <clade>
 866                               <name>Bilateria_Cnidaria</name>
 867                               <clade>
 868                                  <name>NEMVE</name>
 869                               </clade>
 870                               <clade>
 871                                  <name>Bilateria</name>
 872                                  <clade>
 873                                     <name>Nematoda</name>
 874                                     <clade>
 875                                        <name>CAEEL</name>
 876                                     </clade>
 877                                     <clade>
 878                                        <name>CAEBR</name>
 879                                     </clade>
 880                                  </clade>
 881                                  <clade>
 882                                     <name>Protostomia_Deuterostomia</name>
 883                                     <clade>
 884                                        <name>Protostomia</name>
 885                                        <clade>
 886                                           <name>Lophotrochozoa</name>
 887                                           <clade>
 888                                              <name>LOTGI</name>
 889                                           </clade>
 890                                           <clade>
 891                                              <name>Annelida</name>
 892                                              <clade>
 893                                                 <name>CAP</name>
 894                                              </clade>
 895                                              <clade>
 896                                                 <name>HELRO</name>
 897                                              </clade>
 898                                           </clade>
 899                                        </clade>
 900                                        <clade>
 901                                           <name>Arthropoda</name>
 902                                           <clade>
 903                                              <name>DAPPU</name>
 904                                           </clade>
 905                                           <clade>
 906                                              <name>Insecta</name>
 907                                              <clade>
 908                                                 <name>TRICA</name>
 909                                              </clade>
 910                                              <clade>
 911                                                 <name>Diptera_Hymenoptera</name>
 912                                                 <clade>
 913                                                    <name>APIME</name>
 914                                                 </clade>
 915                                                 <clade>
 916                                                    <name>Diptera</name>
 917                                                    <clade>
 918                                                       <name>Muscomorpha</name>
 919                                                       <clade>
 920                                                          <name>DROME</name>
 921                                                       </clade>
 922                                                       <clade>
 923                                                          <name>DROPS</name>
 924                                                       </clade>
 925                                                    </clade>
 926                                                    <clade>
 927                                                       <name>Culicoidea</name>
 928                                                       <clade>
 929                                                          <name>AEDAE</name>
 930                                                       </clade>
 931                                                       <clade>
 932                                                          <name>ANOGA</name>
 933                                                       </clade>
 934                                                    </clade>
 935                                                 </clade>
 936                                              </clade>
 937                                           </clade>
 938                                        </clade>
 939                                     </clade>
 940                                     <clade>
 941                                        <name>Deuterostomia</name>
 942                                        <reference doi="10.1038/nature04336"/>
 943                                        <clade>
 944                                           <name>STRPU</name>
 945                                        </clade>
 946                                        <clade>
 947                                           <name>Chordata</name>
 948                                           <clade>
 949                                              <name>BRAFL</name>
 950                                           </clade>
 951                                           <clade>
 952                                              <name>Urochordata_Vertebrata</name>
 953                                              <clade>
 954                                                 <name>Urochordata</name>
 955                                                 <clade>
 956                                                    <name>CIOIN</name>
 957                                                 </clade>
 958                                                 <clade>
 959                                                    <name>CIOSA</name>
 960                                                 </clade>
 961                                              </clade>
 962                                              <clade>
 963                                                 <name>Vertebrata</name>
 964                                                 <clade>
 965                                                    <name>Teleostei</name>
 966                                                    <clade>
 967                                                       <name>DANRE</name>
 968                                                    </clade>
 969                                                    <clade>
 970                                                       <name>Euteleostei</name>
 971                                                       <clade>
 972                                                          <name>Smegmamorpha</name>
 973                                                          <taxonomy>
 974                                                             <id type="taxonomy id">129949</id>
 975                                                          </taxonomy>
 976                                                          <clade>
 977                                                             <name>GASAC</name>
 978                                                          </clade>
 979                                                          <clade>
 980                                                             <name>ORYLA</name>
 981                                                          </clade>
 982                                                       </clade>
 983                                                       <clade>
 984                                                          <name>Tetraodontiformes</name>
 985                                                          <clade>
 986                                                             <name>FUGRU</name>
 987                                                          </clade>
 988                                                          <clade>
 989                                                             <name>TETNG</name>
 990                                                          </clade>
 991                                                       </clade>
 992                                                    </clade>
 993                                                 </clade>
 994                                                 <clade>
 995                                                    <name>Tetrapoda</name>
 996                                                    <clade>
 997                                                       <name>XENTR</name>
 998                                                    </clade>
 999                                                    <clade>
1000                                                       <name>Amniota</name>
1001                                                       <clade>
1002                                                          <name>CHICK</name>
1003                                                       </clade>
1004                                                       <clade>
1005                                                          <name>Mammalia</name>
1006                                                          <clade>
1007                                                             <name>CANFA</name>
1008                                                          </clade>
1009                                                          <clade>
1010                                                             <name>Euarchontoglires</name>
1011                                                             <clade>
1012                                                             <name>Rodentia</name>
1013                                                             <clade>
1014                                                             <name>MOUSE</name>
1015                                                             </clade>
1016                                                             <clade>
1017                                                             <name>RAT</name>
1018                                                             </clade>
1019                                                             </clade>
1020                                                             <clade>
1021                                                             <name>Primates</name>
1022                                                             <clade>
1023                                                             <name>HUMAN</name>
1024                                                             </clade>
1025                                                             <clade>
1026                                                             <name>PANTR</name>
1027                                                             </clade>
1028                                                             </clade>
1029                                                          </clade>
1030                                                       </clade>
1031                                                    </clade>
1032                                                 </clade>
1033                                              </clade>
1034                                           </clade>
1035                                        </clade>
1036                                     </clade>
1037                                  </clade>
1038                               </clade>
1039                            </clade>
1040                         </clade>
1041                      </clade>
1042                   </clade>
1043                </clade>
1044             </clade>
1045          </clade>
1046       </clade>
1047    </phylogeny>
1048 </phyloxml>