forester/java/src/org/forester/archaeopteryx/TreeColorSet.java

   1 // $Id:
   2 // FORESTER -- software libraries and applications
   3 // for evolutionary biology research and applications.
   4 //
   5 // Copyright (C) 2008-2010 Christian M. Zmasek
   6 // Copyright (C) 2008-2010 Burnham Institute for Medical Research
   7 // Copyright (C) 2003-2010 Ethalinda K.S. Cannon
   8 // All rights reserved
   9 //
  10 // This library is free software; you can redistribute it and/or
  11 // modify it under the terms of the GNU Lesser General Public
  12 // License as published by the Free Software Foundation; either
  13 // version 2.1 of the License, or (at your option) any later version.
  14 //
  15 // This library is distributed in the hope that it will be useful,
  16 // but WITHOUT ANY WARRANTY; without even the implied warranty of
  17 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  18 // Lesser General Public License for more details.
  19 //
  20 // You should have received a copy of the GNU Lesser General Public
  21 // License along with this library; if not, write to the Free Software
  22 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
  23 //
  24 // Contact: phylosoft @ gmail . com
  25 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
  26
  27 package org.forester.archaeopteryx;
  28
  29 import java.awt.Color;
  30 import java.util.Map;
  31
  32 import org.forester.util.ForesterUtil;
  33
  34 public final class TreeColorSet {
  35
  36     public static final String ANNOTATION                 = "Annotation";
  37     public static final String BACKGROUND                 = "Background";
  38     public static final String BACKGROUND_GRADIENT_BOTTOM = "Background Gradient Bottom";
  39     public static final String BINARY_DOMAIN_COMBINATIONS = "Binary Domain Combinations";
  40     public static final String BRANCH                     = "Branch";
  41     public static final String BRANCH_LENGTH              = "Branch Length";
  42     public static final String COLLAPSED                  = "Collapsed";
  43     public static final String CONFIDENCE                 = "Confidence";
  44     public static final String DOMAIN_LABEL               = "Domain Label";
  45     public static final String DOMAIN_BASE                = "Domain Base";
  46     public static final String DUPLICATION                = "Duplication";
  47     public static final String DUPLICATION_OR_SPECATION   = "Duplication or Specation";
  48     public static final String MATCHING_NODES_A           = "Matching A";
  49     public static final String MATCHING_NODES_A_AND_B     = "Matching A and B";
  50     public static final String MATCHING_NODES_B           = "Matching B";
  51     public static final String NODE_BOX                   = "Node Box";
  52     public static final String OVERVIEW                   = "Overview";
  53     public static final String SEQUENCE                   = "Sequence";
  54     public static final String SPECIATION                 = "Speciation";
  55     public static final String TAXONOMY                   = "Taxonomy";
  56     static final String[]      COLOR_FIELDS               = { BACKGROUND, BACKGROUND_GRADIENT_BOTTOM, SEQUENCE,
  57             TAXONOMY, CONFIDENCE, BRANCH_LENGTH, BRANCH, NODE_BOX, COLLAPSED, MATCHING_NODES_A, MATCHING_NODES_B,
  58             MATCHING_NODES_A_AND_B, DUPLICATION, SPECIATION, DUPLICATION_OR_SPECATION, DOMAIN_LABEL, DOMAIN_BASE,
  59             BINARY_DOMAIN_COMBINATIONS, ANNOTATION, OVERVIEW };
  60     static final String[]      SCHEME_NAMES               = { "Default", "Black", "Black & White", "Simple", "Silver", "Green",
  61             "White & Blue", "Cyan", "Orange", "Blue", "Blue & White", "Neon" };
  62     private int                _color_scheme;
  63     private final Color[][]    _color_schemes             = { { new Color( 0, 0, 0 ), // background_color
  64             new Color( 0, 100, 100 ), // background_color_gradient_bottom
  65             new Color( 230, 230, 230 ), // sequence  __ Default (same as Black)
  66             new Color( 180, 180, 180 ), // taxonomy
  67             new Color( 180, 180, 180 ), // support
  68             new Color( 140, 140, 140 ), // branch_length_color
  69             new Color( 255, 255, 255 ), // branch_color
  70             new Color( 255, 255, 255 ), // box_color
  71             new Color( 255, 255, 255 ), // collapesed_fill_color
  72             new Color( 0, 255, 0 ), // found_color 0
  73             new Color( 255, 0, 0 ), // found_color 1
  74             new Color( 255, 255, 0 ), // found_color 1 + 2
  75             new Color( 255, 0, 0 ), // duplication_box_color
  76             new Color( 0, 255, 0 ), // speciation_box_color
  77             new Color( 255, 255, 0 ), // duplication_speciation_color
  78             new Color( 230, 230, 230 ), // domain_label
  79             new Color( 100, 100, 100 ), // domains_base
  80             new Color( 65, 105, 255 ), // binary_domain_combinations_color
  81             new Color( 173, 255, 47 ) // annotation
  82             , new Color( 130, 130, 130 )                 // overview
  83             }, { new Color( 0, 0, 0 ), // background_color
  84             new Color( 0, 255, 255 ), // background_color_gradient_bottom
  85             new Color( 230, 230, 230 ), // sequence  __ Black
  86             new Color( 180, 180, 180 ), // taxonomy
  87             new Color( 180, 180, 180 ), // support
  88             new Color( 140, 140, 140 ), // branch_length_color
  89             new Color( 255, 255, 255 ), // branch_color
  90             new Color( 255, 255, 255 ), // box_color
  91             new Color( 255, 255, 255 ), // collapesed_fill_color
  92             new Color( 0, 255, 0 ), // found_color 0
  93             new Color( 255, 0, 0 ), // found_color 1
  94             new Color( 255, 255, 0 ), // found_color 1 + 2
  95             new Color( 255, 0, 0 ), // duplication_box_color
  96             new Color( 0, 255, 0 ), // speciation_box_color
  97             new Color( 255, 255, 0 ), // duplication_speciation_color
  98             new Color( 230, 230, 230 ), // domain_label
  99             new Color( 100, 100, 100 ), // domains_base
 100             new Color( 65, 105, 255 ), // binary_domain_combinations_color
 101             new Color( 173, 255, 47 ) // annotation
 102             , new Color( 130, 130, 130 ) // ov
 103             }, { new Color( 255, 255, 255 ), // background_color
 104             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 105             new Color( 0, 0, 0 ), // sequence  __ Black & White
 106             new Color( 0, 0, 0 ), // taxonomy
 107             new Color( 0, 0, 0 ), // support
 108             new Color( 0, 0, 0 ), // branch_length_color
 109             new Color( 0, 0, 0 ), // branch_color
 110             new Color( 0, 0, 0 ), // box_color
 111             new Color( 0, 0, 0 ), // collapesed_fill_color
 112             new Color( 255, 0, 0 ), // found_color 0
 113             new Color( 0, 255, 0 ), // found_color 1
 114             new Color( 0, 0, 255 ), // found_color 1 + 2
 115             new Color( 255, 0, 0 ), // duplication_box_color
 116             new Color( 0, 255, 0 ), // speciation_box_color
 117             new Color( 255, 255, 0 ), // duplication_speciation_color
 118             new Color( 0, 0, 0 ), // domain_label
 119             new Color( 100, 100, 100 ), // domains_base
 120             new Color( 0, 0, 0 ), // binary_domain_combinations_color
 121             new Color( 0, 0, 0 ) // annotation
 122             , new Color( 220, 220, 220 ) // ov
 123             },
 124
 125
 126
 127
 128             { new Color( 255, 255, 255 ), // background_color
 129                 new Color( 0, 255, 255 ), // background_color_gradient_bottom
 130                 new Color( 0, 0, 153 ), //sequence __ NEW
 131                 new Color( 0, 0, 102 ), // taxonomy
 132                 new Color( 0, 0, 204 ), // support
 133                 new Color( 0, 51, 255 ), // branch_length_color
 134                 new Color( 0, 0, 0 ), // branch_color
 135                 new Color( 0, 51, 255 ), // box_color
 136                 new Color( 0, 51, 255 ), // collapesed_fill_color
 137                 new Color( 0, 0, 255 ), // found_color 0
 138                 new Color( 0, 255, 0 ), // found_color 1
 139                 new Color( 0, 255, 255 ), // found_color 0 + 1
 140                 new Color( 102, 51, 255 ), // duplication_box_color
 141                 new Color( 153, 153, 153 ), // speciation_box_color
 142                 new Color( 255, 255, 0 ), // duplication_speciation_color
 143                 new Color( 51, 51, 51), // domain_label
 144                 new Color(  51, 51, 51 ), // domains_base
 145                 new Color( 0, 0, 153 ), // binary_domain_combinations_color
 146                 new Color( 0, 0, 153 ),// annotation
 147                 new Color( 51, 51, 51 ) // ov
 148             }  ,
 149
 150
 151
 152
 153
 154
 155
 156             { new Color( 0, 0, 0 ), // background_color
 157             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 158             new Color( 220, 220, 220 ), // sequence __ Silver
 159             new Color( 180, 180, 180 ), // taxonomy
 160             new Color( 140, 140, 140 ), // support
 161             new Color( 140, 140, 140 ), // branch_length_color
 162             new Color( 240, 240, 240 ), // branch_color
 163             new Color( 140, 140, 140 ), // box_color
 164             new Color( 240, 240, 240 ), // collapesed_fill_color
 165             new Color( 255, 0, 0 ), // found_color 0
 166             new Color( 0, 255, 0 ), // found_color 1
 167             new Color( 255, 255, 0 ), // found_color 1 + 2
 168             new Color( 255, 0, 0 ), // duplication_box_color
 169             new Color( 0, 255, 0 ), // speciation_box_color
 170             new Color( 255, 255, 0 ), // duplication_speciation_color
 171             new Color( 230, 230, 230 ), // domain_label
 172             new Color( 100, 100, 100 ), // domains_base
 173             new Color( 180, 180, 180 ), // binary_domain_combinations_color
 174             new Color( 140, 140, 140 ) // annotation
 175             , new Color( 40, 40, 40 ) // ov
 176             }, { new Color( 0, 10, 0 ), // background_color
 177             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 178             new Color( 0, 255, 0 ), // sequence __ the Matrix
 179             new Color( 30, 200, 30 ), // taxonomy
 180             new Color( 0, 155, 0 ), // support
 181             new Color( 0, 100, 0 ), // branch_length_color
 182             new Color( 0, 155, 0 ), // branch_color
 183             new Color( 0, 255, 0 ), // box_color
 184             new Color( 0, 155, 0 ), // collapesed_fill_color
 185             new Color( 255, 0, 0 ), // found_color 0
 186             new Color( 0, 255, 0 ), // found_color 1
 187             new Color( 255, 255, 0 ), // found_color 1 + 2
 188             new Color( 255, 0, 0 ), // duplication_box_color
 189             new Color( 0, 255, 0 ), // speciation_box_color
 190             new Color( 255, 255, 0 ), // duplication_speciation_color
 191             new Color( 230, 230, 230 ), // domain_label
 192             new Color( 100, 100, 100 ), // domains_base
 193             new Color( 0, 235, 0 ), // binary_domain_combinations_color
 194             new Color( 0, 235, 0 ) // annotation
 195             , new Color( 40, 40, 40 ) // ov
 196             }, { new Color( 255, 255, 255 ), // background_color
 197             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 198             new Color( 0, 0, 0 ), //sequence __ White & Blue
 199             new Color( 40, 40, 40 ), // taxonomy
 200             new Color( 0, 125, 0 ), // support
 201             new Color( 70, 70, 0 ), // branch_length_color
 202             new Color( 0, 20, 200 ), // branch_color
 203             new Color( 0, 20, 200 ), // box_color
 204             new Color( 0, 20, 200 ), // collapesed_fill_color
 205             new Color( 0, 255, 0 ), // found_color 0
 206             new Color( 255, 0, 0 ), // found_color 1
 207             new Color( 0, 0, 255 ), // found_color 0 + 1
 208             new Color( 255, 0, 0 ), // duplication_box_color
 209             new Color( 0, 255, 0 ), // speciation_box_color
 210             new Color( 255, 255, 0 ), // duplication_speciation_color
 211             new Color( 0, 0, 0 ), // domain_label
 212             new Color( 50, 50, 50 ), // domains_base
 213             new Color( 65, 105, 225 ), // binary_domain_combinations_color
 214             new Color( 173, 255, 47 ) // annotation
 215             , new Color( 220, 220, 220 ) // ov
 216             }, { new Color( 0, 0, 0 ), // background_color
 217             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 218             new Color( 255, 255, 255 ), // sequence __ Cyan
 219             new Color( 200, 200, 200 ), // taxonomy
 220             new Color( 255, 255, 255 ), // support
 221             new Color( 200, 200, 200 ), // branch_length_color
 222             new Color( 0, 255, 255 ), // branch_color
 223             new Color( 0, 255, 255 ), // box_color
 224             new Color( 0, 255, 255 ), // collapesed_fill_color
 225             new Color( 0, 255, 0 ), // found_color 0
 226             new Color( 0, 0, 255 ), // found_color 1
 227             new Color( 0, 255, 255 ), // found_color 0 + 1
 228             new Color( 255, 0, 0 ), // duplication_box_color
 229             new Color( 0, 255, 0 ), // speciation_box_color
 230             new Color( 255, 255, 0 ), // duplication_speciation_color
 231             new Color( 230, 230, 230 ), // domain_label
 232             new Color( 100, 100, 100 ), // domains_base
 233             new Color( 65, 105, 225 ), // binary_domain_combinations_color
 234             new Color( 173, 255, 47 ) // annotation
 235             , new Color( 0, 120, 120 ) // ov
 236             }, { new Color( 0, 0, 0 ), // background_color
 237             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 238             new Color( 255, 200, 0 ), // sequence __ Clockwork
 239             new Color( 255, 200, 0 ), // taxonomy
 240             new Color( 255, 200, 0 ), // support
 241             new Color( 255, 200, 0 ), // branch_length_color
 242             new Color( 255, 200, 0 ), // branch_color
 243             new Color( 255, 200, 0 ), // box_color
 244             new Color( 255, 200, 0 ), // collapesed_fill_color
 245             new Color( 255, 255, 0 ), // found_color 0
 246             new Color( 0, 255, 255 ), // found_color 1
 247             new Color( 255, 255, 255 ), // found_color 0 + 1
 248             new Color( 255, 0, 0 ), // duplication_box_color
 249             new Color( 0, 255, 0 ), // speciation_box_color
 250             new Color( 255, 255, 0 ), // duplication_speciation_color
 251             new Color( 255, 200, 0 ), // domain_label
 252             new Color( 255, 200, 0 ), // domains_base
 253             new Color( 150, 150, 150 ), // binary_domain_combinations_color
 254             new Color( 150, 150, 150 ) // annotation
 255             , new Color( 150, 150, 150 ) // ov
 256             }, { new Color( 0, 0, 100 ), // background_color
 257             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 258             new Color( 255, 255, 255 ), // sequence __ Blue
 259             new Color( 255, 255, 255 ), // taxonomy
 260             new Color( 255, 0, 0 ), // support
 261             new Color( 255, 0, 0 ), // branch_length_color
 262             new Color( 255, 0, 0 ), // branch_color
 263             new Color( 255, 0, 0 ), // box_color
 264             new Color( 255, 0, 0 ), // collapesed_fill_color
 265             new Color( 0, 255, 0 ), // found_color
 266             new Color( 255, 0, 0 ), // found_color 1
 267             new Color( 255, 255, 0 ), // found_color 1 + 2
 268             new Color( 255, 0, 0 ), // duplication_box_color
 269             new Color( 0, 255, 0 ), // speciation_box_color
 270             new Color( 255, 255, 0 ), // duplication_speciation_color
 271             new Color( 255, 255, 255 ), // domain_label
 272             new Color( 100, 100, 100 ), // domains_base
 273             new Color( 255, 255, 255 ), // binary_domain_combinations_color
 274             new Color( 255, 255, 255 ) // annotation
 275             , new Color( 77, 77, 255 ) // ov
 276             }, { new Color( 0, 0, 0 ), // background_color
 277             new Color( 0, 255, 255 ), // background_color_gradient_bottom
 278             new Color( 255, 255, 255 ), // sequence __ blue &  white
 279             new Color( 255, 255, 255 ), // taxonomy
 280             new Color( 255, 255, 255 ), // support
 281             new Color( 0, 191, 255 ), // branch_length_color
 282             new Color( 0, 191, 255 ), // branch_color
 283             new Color( 0, 191, 255 ), // box_color
 284             new Color( 0, 191, 255 ), // collapesed_fill_color
 285             new Color( 255, 0, 0 ), // found_color 0
 286             new Color( 0, 255, 0 ), // found_color 1
 287             new Color( 255, 255, 0 ), // found_color 0 + 1
 288             new Color( 255, 0, 0 ), // duplication_box_color
 289             new Color( 0, 255, 0 ), // speciation_box_color
 290             new Color( 255, 255, 0 ), // duplication_speciation_color
 291             new Color( 255, 255, 255 ), // domain_label
 292             new Color( 150, 150, 150 ), // domains_base
 293             new Color( 255, 255, 255 ), // binary_domain_combinations_color
 294             new Color( 255, 255, 255 ) // annotation
 295             , new Color( 170, 187, 204 ) // ov
 296             }, { new Color( 0, 0, 0 ), // background_color
 297             new Color( 255, 255, 0 ), // background_color_gradient_bottom
 298             new Color( 127, 255, 0 ), // sequence __ Neon
 299             new Color( 255, 110, 199 ), // taxonomy
 300             new Color( 234, 173, 234 ), // support
 301             new Color( 77, 77, 255 ), // branch_length_color
 302             new Color( 234, 173, 234 ), // branch_color
 303             new Color( 77, 77, 255 ), // box_color
 304             new Color( 234, 173, 234 ), // collapsed_fill_color
 305             new Color( 243, 243, 21 ), // found_color 0
 306             new Color( 255, 20, 147 ), // found_color 1
 307             new Color( 255, 255, 255 ), // found_color 1 + 2
 308             new Color( 255, 0, 0 ), // duplication_box_color
 309             new Color( 0, 255, 0 ), // speciation_box_color
 310             new Color( 255, 255, 0 ), // duplication_speciation_color
 311             new Color( 127, 255, 0 ), // domain_label
 312             new Color( 234, 173, 234 ), // domains_base
 313             new Color( 27, 255, 0 ), // binary_domain_combinations_color
 314             new Color( 27, 255, 0 ) // annotation
 315             , new Color( 77, 77, 255 ) // ov
 316             }                                            };
 317     private Color              annotation_color;
 318     private Color              background_color;
 319     private Color              background_color_gradient_bottom;
 320     private Color              binary_domain_combinations_color;
 321     private Color              bootstrap_color;
 322     private Color              box_color;
 323     private Color              branch_color;
 324     private Color              branch_length_color;
 325     private Color              collapse_fill_color;
 326     private Color              domain_label_color;
 327     private Color              domain_base_color;
 328     private Color              dup_box_color;
 329     private Color              duplication_or_specation_color;
 330     private Color              found_color_0;
 331     private Color              found_color_0_and_1;
 332     private Color              found_color_1;
 333     private Color              ov_color;
 334     // The drawing colors
 335     private Color              seq_color;
 336     private Color              spec_box_color;
 337     private Color              taxonomy_color;
 338
 339     private TreeColorSet() {
 340         // Hidden constructor.
 341     }
 342
 343     public Color getDomainBaseColor() {
 344         return domain_base_color;
 345     }
 346
 347     public Color getDomainLabelColor() {
 348         return domain_label_color;
 349     }
 350
 351     private void setColorForDefault( final int i, final Color color ) {
 352         _color_schemes[ 0 ][ i ] = color;
 353     }
 354
 355     void cycleColorScheme() {
 356         if ( getCurrentColorScheme() >= ( _color_schemes.length - 1 ) ) {
 357             setColorSchema( 0 );
 358         }
 359         else {
 360             setColorSchema( getCurrentColorScheme() + 1 );
 361         }
 362     }
 363
 364     Color getAnnotationColor() {
 365         return annotation_color;
 366     }
 367
 368     Color getBackgroundColor() {
 369         return background_color;
 370     }
 371
 372     Color getBackgroundColorGradientBottom() {
 373         return background_color_gradient_bottom;
 374     }
 375
 376     Color getBinaryDomainCombinationsColor() {
 377         if ( AptxConstants.SPECIAL_CUSTOM ) {
 378             return new Color( 50, 50, 50 );
 379         }
 380         return binary_domain_combinations_color;
 381     }
 382
 383     Color getBoxColor() {
 384         return box_color;
 385     }
 386
 387     Color getBranchColor() {
 388         return branch_color;
 389     }
 390
 391     Color getBranchColorForPdf() {
 392         return Color.BLACK;
 393     }
 394
 395     Color getBranchLengthColor() {
 396         return branch_length_color;
 397     }
 398
 399     Color getCollapseFillColor() {
 400         return collapse_fill_color;
 401     }
 402
 403     Color[][] getColorSchemes() {
 404         return _color_schemes;
 405     }
 406
 407     Color getConfidenceColor() {
 408         return bootstrap_color;
 409     }
 410
 411     int getCurrentColorScheme() {
 412         return _color_scheme;
 413     }
 414
 415     String getCurrentColorSchemeName() {
 416         return SCHEME_NAMES[ getCurrentColorScheme() ];
 417     }
 418
 419     Color getDuplicationBoxColor() {
 420         return dup_box_color;
 421     }
 422
 423     Color getDuplicationOrSpeciationColor() {
 424         return duplication_or_specation_color;
 425     }
 426
 427     Color getFoundColor0() {
 428         return found_color_0;
 429     }
 430
 431     Color getFoundColor0and1() {
 432         return found_color_0_and_1;
 433     }
 434
 435     Color getFoundColor1() {
 436         return found_color_1;
 437     }
 438
 439     Color getGainedCharactersColor() {
 440         return Color.GREEN;
 441     }
 442
 443     Color getLostCharactersColor() {
 444         return Color.RED;
 445     }
 446
 447     Color getOvColor() {
 448         return ov_color;
 449     }
 450
 451     Color getSequenceColor() {
 452         return seq_color;
 453     }
 454
 455     Color getSpecBoxColor() {
 456         return spec_box_color;
 457     }
 458
 459     Color getTaxonomyColor() {
 460         return taxonomy_color;
 461     }
 462
 463     void setColorforDefault( final String color_field_name, final Color color ) {
 464         final String query = color_field_name.trim().replace( '_', ' ' );
 465         boolean found = false;
 466         int i = 0;
 467         for( final String cf : COLOR_FIELDS ) {
 468             if ( query.equalsIgnoreCase( cf ) ) {
 469                 found = true;
 470                 setColorForDefault( i, color );
 471                 break;
 472             }
 473             ++i;
 474         }
 475         if ( !found ) {
 476             throw new IllegalArgumentException( "unknown color field name [" + color_field_name + "]" );
 477         }
 478     }
 479
 480     /**
 481      * Switches colors between different schemes.
 482      */
 483     void setColorSchema( final int scheme ) {
 484         _color_scheme = scheme;
 485         background_color = _color_schemes[ scheme ][ 0 ];
 486         background_color_gradient_bottom = _color_schemes[ scheme ][ 1 ];
 487         seq_color = _color_schemes[ scheme ][ 2 ];
 488         taxonomy_color = _color_schemes[ scheme ][ 3 ];
 489         bootstrap_color = _color_schemes[ scheme ][ 4 ];
 490         branch_length_color = _color_schemes[ scheme ][ 5 ];
 491         branch_color = _color_schemes[ scheme ][ 6 ];
 492         box_color = _color_schemes[ scheme ][ 7 ];
 493         collapse_fill_color = _color_schemes[ scheme ][ 8 ];
 494         found_color_0 = _color_schemes[ scheme ][ 9 ];
 495         found_color_1 = _color_schemes[ scheme ][ 10 ];
 496         found_color_0_and_1 = _color_schemes[ scheme ][ 11 ];
 497         dup_box_color = _color_schemes[ scheme ][ 12 ];
 498         spec_box_color = _color_schemes[ scheme ][ 13 ];
 499         duplication_or_specation_color = _color_schemes[ scheme ][ 14 ];
 500         domain_label_color = _color_schemes[ scheme ][ 15 ];
 501         domain_base_color = _color_schemes[ scheme ][ 16 ];
 502         binary_domain_combinations_color = _color_schemes[ scheme ][ 17 ];
 503         annotation_color = _color_schemes[ scheme ][ 18 ];
 504         ov_color = _color_schemes[ scheme ][ 19 ];
 505     }
 506
 507     void setCurrentColorScheme( final int color_scheme ) {
 508         _color_scheme = color_scheme;
 509     }
 510
 511     static TreeColorSet createInstance() {
 512         final TreeColorSet tcs = new TreeColorSet();
 513         tcs.setColorSchema( 0 );
 514         return tcs;
 515     }
 516
 517     static TreeColorSet createInstance( final Configuration configuration ) {
 518         final TreeColorSet tcs = new TreeColorSet();
 519         if ( ( configuration != null ) && ( configuration.getDisplayColors() != null )
 520                 && ( configuration.getDisplayColors().size() > 0 ) ) {
 521             final Map<String, Color> colors = configuration.getDisplayColors();
 522             for( final String field : colors.keySet() ) {
 523                 final Color color = colors.get( field );
 524                 try {
 525                     tcs.setColorforDefault( field, color );
 526                 }
 527                 catch ( final IllegalArgumentException ex ) {
 528                     ForesterUtil.printWarningMessage( AptxConstants.PRG_NAME, ex.getMessage() );
 529                 }
 530             }
 531         }
 532         tcs.setColorSchema( 0 );
 533         return tcs;
 534     }
 535 }