2 // forester -- software libraries and applications
3 // for genomics and evolutionary biology research.
5 // Copyright (C) 2010 Christian M Zmasek
6 // Copyright (C) 2010 Sanford-Burnham Medical Research Institute
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.archaeopteryx.tools;
28 import java.awt.color.CMMException;
29 import java.awt.image.BufferedImage;
30 import java.io.IOException;
31 import java.net.MalformedURLException;
32 import java.util.ArrayList;
33 import java.util.Hashtable;
34 import java.util.List;
36 import javax.imageio.ImageIO;
38 import org.forester.archaeopteryx.AptxUtil;
39 import org.forester.archaeopteryx.AptxConstants;
40 import org.forester.archaeopteryx.TreePanel;
41 import org.forester.phylogeny.PhylogenyNode;
42 import org.forester.phylogeny.data.Taxonomy;
43 import org.forester.phylogeny.data.Uri;
44 import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
46 public class ImageLoader implements Runnable {
48 private final TreePanel _tp;
49 private static final BufferedImage PLACEHOLDER = new BufferedImage( 1, 1, BufferedImage.TYPE_INT_RGB );
50 private final static boolean DEBUG = false;
52 public ImageLoader( final TreePanel tp ) {
62 Hashtable<String, BufferedImage> image_map = null;
63 if ( _tp.getImageMap() != null ) {
64 image_map = _tp.getImageMap();
67 image_map = new Hashtable<String, BufferedImage>();
68 _tp.setImageMap( image_map );
70 // ImageIO.setUseCache( false );
71 for( final PhylogenyNodeIterator it = _tp.getPhylogeny().iteratorPreorder(); it.hasNext(); ) {
72 final PhylogenyNode node = it.next();
73 if ( node.getNodeData().isHasTaxonomy() && ( node.getNodeData().getTaxonomy().getUris() != null )
74 && !node.getNodeData().getTaxonomy().getUris().isEmpty() ) {
75 final List<Uri> us = new ArrayList<Uri>();
76 for( final Taxonomy t : node.getNodeData().getTaxonomies() ) {
77 if ( t.getUris() != null ) {
78 for( final Uri uri : t.getUris() ) {
83 for( final Uri uri : us ) {
85 final String type = uri.getType().toLowerCase();
86 final String uri_str = uri.getValue().toString().toLowerCase();
87 if ( ( !image_map.containsKey( uri_str ) )
88 && ( type.equals( "image" ) || type.equals( "img" ) || type.equals( "photo" )
89 || type.equals( "picture" ) || uri_str.endsWith( ".jpg" )
90 || uri_str.endsWith( ".jpeg" ) || uri_str.endsWith( ".png" )
91 || uri_str.endsWith( ".gif" ) || uri_str.endsWith( ".bmp" ) ) ) {
92 image_map.put( uri_str, PLACEHOLDER );
93 BufferedImage bi = null;
95 System.out.println( "accessing: " + uri );
98 bi = ImageIO.read( uri.getValue().toURL() );
100 catch ( final MalformedURLException e ) {
101 AptxUtil.printWarningMessage( AptxConstants.PRG_NAME,
102 "could not load image from \"" + uri.getValue()
103 + "\": Malformed URL Exception: "
104 + e.getLocalizedMessage() );
106 catch ( final IOException e ) {
107 AptxUtil.printWarningMessage( AptxConstants.PRG_NAME,
108 "could not load image from \"" + uri.getValue()
109 + "\": IO Exception: " + e.getLocalizedMessage() );
111 catch ( final CMMException e ) {
112 AptxUtil.printWarningMessage( AptxConstants.PRG_NAME,
113 "could not load image from \"" + uri.getValue()
114 + "\": CMMException: " + e.getLocalizedMessage() );
117 image_map.put( uri_str, bi );
121 image_map.remove( uri_str );