2 // FORESTER -- software libraries and applications
3 // for evolutionary biology research and applications.
5 // Copyright (C) 2008-2009 Christian M. Zmasek
6 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.go;
28 public interface GoRelationship extends Comparable<GoRelationship> {
30 public static final String PART_OF_STR = "part_of";
31 public static final String REGULATES_STR = "regulates";
32 public static final String NEGATIVELY_REGULATES_STR = "negatively_regulates";
33 public static final String POSITIVELY_REGULATES_STR = "positively_regulates";
34 public static final String HAS_PART_STR = "has_part";
35 public static final String OCCURS_IN_STR = "occurs_in";
37 public GoId getGoId();
39 public Type getType();
41 public static enum Type {
42 PART_OF, REGULATES, NEGATIVELY_REGULATES, POSITIVELY_REGULATES, HAS_PART, OCCURS_IN;