forester/java/src/org/forester/go/GoSubset.java

   1 // $Id:
   2 // FORESTER -- software libraries and applications
   3 // for evolutionary biology research and applications.
   4 //
   5 // Copyright (C) 2008-2009 Christian M. Zmasek
   6 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
   7 // All rights reserved
   8 //
   9 // This library is free software; you can redistribute it and/or
  10 // modify it under the terms of the GNU Lesser General Public
  11 // License as published by the Free Software Foundation; either
  12 // version 2.1 of the License, or (at your option) any later version.
  13 //
  14 // This library is distributed in the hope that it will be useful,
  15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
  16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  17 // Lesser General Public License for more details.
  18 //
  19 // You should have received a copy of the GNU Lesser General Public
  20 // License along with this library; if not, write to the Free Software
  21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
  22 //
  23 // Contact: phylosoft @ gmail . com
  24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
  25
  26 package org.forester.go;
  27
  28 public interface GoSubset extends Comparable<GoSubset> {
  29
  30     public static final String GOSLIM_GENERIC_STR           = "goslim_generic";
  31     public static final String GOSLIM_GOA_STR               = "goslim_goa";
  32     public static final String GOSLIM_PIR_STR               = "goslim_pir";
  33     public static final String GOSUBSET_PROK_STR            = "gosubset_prok";
  34     public static final String GOSLIM_CANDIDA_STR           = "goslim_candida";
  35     public static final String GOSLIM_ASPERGILLUS_STR       = "goslim_aspergillus";
  36     public static final String GOSLIM_PLANT_STR             = "goslim_plant";
  37     public static final String GOSLIM_YEAST_STR             = "goslim_yeast";
  38     public static final String GOSLIM_POMBE_STR             = "goslim_pombe";
  39     public static final String HIGH_LEVEL_ANNOTATION_QC_STR = "high_level_annotation_qc";
  40     public static final String UNVETTED_STR                 = "unvetted";
  41     public static final String MF_NEEDS_REVIEW_STR          = "mf_needs_review";
  42
  43     public Type getType();
  44
  45     public static enum Type {
  46         GOSLIM_GENERIC,
  47         GOSLIM_GOA,
  48         GOSLIM_PIR,
  49         GOSUBSET_PROK,
  50         GOSLIM_CANDIDA,
  51         GOSLIM_ASPERGILLUS,
  52         GOSLIM_PLANT,
  53         GOSLIM_YEAST,
  54         GOSLIM_POMBE,
  55         HIGH_LEVEL_ANNOTATION_QC,
  56         UNVETTED,
  57         MF_NEEDS_REVIEW;
  58     }
  59 }