2 // FORESTER -- software libraries and applications
3 // for evolutionary biology research and applications.
5 // Copyright (C) 2008-2009 Christian M. Zmasek
6 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.go;
28 import java.util.List;
30 import org.forester.phylogeny.data.PhylogenyData;
32 public interface GoTerm extends PhylogenyData, Comparable<GoTerm> {
34 public List<GoId> getAltIds();
36 public String getComment();
38 public String getDefinition();
40 public GoId getGoId();
42 public GoNameSpace getGoNameSpace();
44 public List<GoRelationship> getGoRelationships();
46 public List<GoSubset> getGoSubsets();
48 public List<GoXRef> getGoXRefs();
50 public String getName();
52 public List<GoId> getSuperGoIds();
54 public boolean isObsolete();