2 // FORESTER -- software libraries and applications
3 // for evolutionary biology research and applications.
5 // Copyright (C) 2008-2009 Christian M. Zmasek
6 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.go;
28 public interface GoXRef extends Comparable<GoXRef> {
30 public static final String EC_STR = "EC";
31 public static final String META_CYC_STR = "MetaCyc";
32 public static final String REACTOME_STR = "Reactome";
33 public static final String RESID_STR = "RESID";
34 public static final String UM_BBD_ENZYME_ID_STR = "UM-BBD_enzymeID";
35 public static final String UM_BBD_PATHWAY_ID_STR = "UM-BBD_pathwayID";
36 public static final String UM_BBD_REACTIONID_STR = "UM-BBD_reactionID";
37 public static final String TC_STR = "TC";
38 public static final String ARACYC_STR = "AraCyc";
39 public static final String XX_STR = "XX";
40 public static final String PMID_STR = "PMID";
41 public static final String IMG_STR = "IMG";
42 public static final String GOC_STR = "GOC";
43 public static final String WIKIPEDIA_STR = "Wikipedia";
44 public static final String KEGG_STR = "KEGG";
45 public static final String RHEA_STR = "RHEA";
46 public static final String NIF_SUBCELLULAR_STR = "NIF_Subcellular";
47 public static final String CORUM_STR = "CORUM";
48 public static final String UNIPATHWAY_STR = "UniPathway";
49 public static final String PO_STR = "PO";
50 public static final String SABIO_RK_STR = "SABIO-RK";
52 public Type getType();
54 public String getXRef();
56 public static enum Type {