2 // FORESTER -- software libraries and applications
3 // for evolutionary biology research and applications.
5 // Copyright (C) 2008-2009 Christian M. Zmasek
6 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.go;
28 public class PfamToGoMapping implements Mapping {
30 private final String _pfam_domain_id;
31 private final GoId _go_id;
33 public PfamToGoMapping( final String pfam_domain_id, final GoId go_id ) {
34 _pfam_domain_id = pfam_domain_id;
39 public int compareTo( final Mapping m ) {
43 return getKey().compareTo( ( String ) m.getKey() );
47 * Based on key and value.
52 public boolean equals( final Object o ) {
56 else if ( o == null ) {
57 throw new IllegalArgumentException( "attempt to check pfam to go mapping equality to null" );
59 else if ( o.getClass() != this.getClass() ) {
60 throw new IllegalArgumentException( "attempt to check pfam to go mapping equality to " + o + " ["
61 + o.getClass() + "]" );
64 return getKey().equals( ( ( PfamToGoMapping ) o ).getKey() )
65 && getValue().equals( ( ( PfamToGoMapping ) o ).getValue() );
70 public String getKey() {
71 return _pfam_domain_id;
75 public GoId getValue() {
80 public String toString() {
81 final StringBuffer sb = new StringBuffer();
82 sb.append( getKey().toString() );
84 sb.append( getValue().toString() );