2 // FORESTER -- software libraries and applications
3 // for evolutionary biology research and applications.
5 // Copyright (C) 2008-2009 Christian M. Zmasek
6 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.io.parsers.nhx;
28 public final class NHXtags {
30 public static final String CUSTOM_DATA_ON_NODE = "XN=";
31 public static final String COLOR = "C=";
32 public static final String PARENT_BRANCH_WIDTH = "W=";
33 public static final String SUBTREE_NEIGHBORS = "SNn=";
34 public static final String SUPER_ORTHOLOGOUS = "SOn=";
35 public static final String ORTHOLOGOUS = "On=";
36 public static final String TAXONOMY_ID = "T=";
37 public static final String SUPPORT = "B=";
38 public static final String IS_DUPLICATION = "D=";
39 public static final String ANNOTATION = "AN=";
40 public static final String SPECIES_NAME = "S=";
41 public static final String DOMAIN_STRUCTURE = "DS=";
42 public static final String GENE_NAME = "GN=";
43 public static final String SEQUENCE_ACCESSION = "AC=";
44 public static final Object BRANCH_WIDTH = "W=";