4 // FORESTER -- software libraries and applications
5 // for evolutionary biology research and applications.
7 // Copyright (C) 2008-2009 Christian M. Zmasek
8 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
11 // This library is free software; you can redistribute it and/or
12 // modify it under the terms of the GNU Lesser General Public
13 // License as published by the Free Software Foundation; either
14 // version 2.1 of the License, or (at your option) any later version.
16 // This library is distributed in the hope that it will be useful,
17 // but WITHOUT ANY WARRANTY; without even the implied warranty of
18 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
19 // Lesser General Public License for more details.
21 // You should have received a copy of the GNU Lesser General Public
22 // License along with this library; if not, write to the Free Software
23 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
25 // Contact: phylosoft @ gmail . com
26 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
28 package org.forester.surfacing;
30 import java.util.SortedMap;
32 import org.forester.protein.DomainId;
35 * A helper class for PrintableDomainSimilarity.
37 interface SpeciesSpecificDomainSimilariyData {
39 public void addProteinsExhibitingCombinationCount( final DomainId domain_id, final int count );
42 * This should return a sorted map mapping domain ids to their corresponding
45 * @return a sorted map mapping domain ids to their corresponding counts
47 public SortedMap<DomainId, Integer> getCombinableDomainIdToCountsMap();
49 public int getNumberOfProteinsExhibitingCombinationWith( final DomainId domain_id );
51 public StringBuffer toStringBuffer( final DomainSimilarityCalculator.Detailedness detailedness, boolean html );