forester/java/src/org/forester/surfacing/SurfacingConstants.java

   1 // $Id:
   2 //
   3 // FORESTER -- software libraries and applications
   4 // for evolutionary biology research and applications.
   5 //
   6 // Copyright (C) 2008-2009 Christian M. Zmasek
   7 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
   8 // All rights reserved
   9 //
  10 // This library is free software; you can redistribute it and/or
  11 // modify it under the terms of the GNU Lesser General Public
  12 // License as published by the Free Software Foundation; either
  13 // version 2.1 of the License, or (at your option) any later version.
  14 //
  15 // This library is distributed in the hope that it will be useful,
  16 // but WITHOUT ANY WARRANTY; without even the implied warranty of
  17 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
  18 // Lesser General Public License for more details.
  19 //
  20 // You should have received a copy of the GNU Lesser General Public
  21 // License along with this library; if not, write to the Free Software
  22 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
  23 //
  24 // Contact: phylosoft @ gmail . com
  25 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
  26
  27 package org.forester.surfacing;
  28
  29 import org.forester.util.ForesterUtil;
  30
  31 public class SurfacingConstants {
  32
  33     public static final String AMIGO_LINK                     = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
  34     public static final String EOL_LINK                       = "http://www.eol.org/search?q=";
  35     public static final String GO_LINK                        = "http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?view=details&search_constraint=terms&query=";
  36     public static final String GOOGLE_SCHOLAR_SEARCH          = "http://scholar.google.com/scholar?q=";
  37     public static final String GOOGLE_WEB_SEARCH_LINK         = "http://www.google.com/search?q=";
  38     public static final String NL                             = ForesterUtil.LINE_SEPARATOR;
  39     public static final String NONE                           = "[none]";
  40     public static final String PFAM_FAMILY_ID_LINK            = "http://pfam.xfam.org/family/";
  41     public static final String UNIPROT_TAXONOMY_ID_LINK       = "http://www.uniprot.org/taxonomy/";
  42     static final boolean       PRINT_MORE_DOM_SIMILARITY_INFO = false;
  43     static final boolean       SECONDARY_FEATURES_ARE_SCOP    = true;
  44     static final String        SECONDARY_FEATURES_SCOP_LINK   = "http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?key=";
  45 }