2 // forester -- software libraries and applications
3 // for genomics and evolutionary biology research.
5 // Copyright (C) 2010 Christian M Zmasek
6 // Copyright (C) 2010 Sanford-Burnham Medical Research Institute
9 // This library is free software; you can redistribute it and/or
10 // modify it under the terms of the GNU Lesser General Public
11 // License as published by the Free Software Foundation; either
12 // version 2.1 of the License, or (at your option) any later version.
14 // This library is distributed in the hope that it will be useful,
15 // but WITHOUT ANY WARRANTY; without even the implied warranty of
16 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 // Lesser General Public License for more details.
19 // You should have received a copy of the GNU Lesser General Public
20 // License along with this library; if not, write to the Free Software
21 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
23 // Contact: phylosoft @ gmail . com
24 // WWW: https://sites.google.com/site/cmzmasek/home/software/forester
26 package org.forester.ws.seqdb;
28 import java.util.SortedSet;
30 import org.forester.go.GoTerm;
31 import org.forester.phylogeny.data.Accession;
32 import org.forester.phylogeny.data.Annotation;
34 public interface SequenceDatabaseEntry {
36 public String getAccession();
38 public String getGeneName();
40 public SortedSet<GoTerm> getGoTerms();
42 public SortedSet<Annotation> getAnnotations();
44 public String getProvider();
46 public String getSequenceName();
48 public String getSequenceSymbol();
50 public String getTaxonomyIdentifier();
52 public String getTaxonomyScientificName();
54 public boolean isEmpty();
56 public SortedSet<Accession> getCrossReferences();