forester/phyloxml/docs/version_0.90/phyloxml.xsd.html

   1
   2 <!DOCTYPE html
   3   PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
   4 <html xmlns="http://www.w3.org/1999/xhtml">
   5    <head>
   6       <title>phyloXML 0.90 - phyloxml.xsd</title>
   7       <meta http-equiv="Content-Type" content="text/xml; charset=UTF-8"/>
   8       <style type="text/css">
   9 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
  10 /* More-configurable styles */
  11
  12 /******** General ********/
  13
  14 /* Document body */
  15 body {
  16    color: Black;
  17    background-color: White;
  18    font-family: Arial, sans-serif;
  19    font-size: 10pt;
  20 }
  21
  22 /* Horizontal rules */
  23 hr {
  24    color: black;
  25 }
  26 /* Document title */
  27 h1 {
  28    font-size: 18pt;
  29    letter-spacing: 2px;
  30    border-bottom: 1px #ccc solid;
  31    padding-top: 5px;
  32    padding-bottom: 5px;
  33 }
  34 /* Main section headers */
  35 h2 {
  36    font-size: 14pt;
  37    letter-spacing: 1px;
  38 }
  39 /* Sub-section headers */
  40 h3, h3 a, h3 span {
  41    font-size: 12pt;
  42    font-weight: bold;
  43    color: black;
  44 }
  45 /* Table displaying the properties of the schema components or the
  46    schema document itself */
  47 table.properties th, table.properties th a {
  48    color: black;
  49    background-color: #F99; /* Pink */
  50 }
  51 table.properties td {
  52    background-color: #eee; /* Gray */
  53 }
  54
  55 img{
  56  border: 0;
  57 }
  58
  59 /********* Documentation style *************/
  60 p.documentation {
  61    color:black;
  62    font-style:italic;
  63          background-color: #EEEEFF;
  64          border: 1px solid #DDDDFF;
  65          padding-top: 1px;
  66          margin-right: 30px;
  67          margin-top: 1px;
  68 }
  69
  70
  71 /******** Table of Contents Section ********/
  72
  73 /* Controls for switching between printing and viewing modes */
  74 div#printerControls {
  75    color: #963; /* Orange-brown */
  76 }
  77 /* Controls that can collapse or expand all XML Instance
  78    Representation and Schema Component Representation boxes */
  79 div#globalControls {
  80    border: 2px solid #999;
  81 }
  82
  83
  84 /******** Schema Document Properties Section ********/
  85
  86 /* Table displaying the namespaces declared in the schema */
  87 table.namespaces th {
  88    background-color: #ccc;
  89 }
  90 table.namespaces td {
  91    background-color: #eee;
  92 }
  93 /* Target namespace of the schema */
  94 span.targetNS {
  95    color: #06C;
  96    font-weight: bold;
  97 }
  98
  99
 100 /******** Schema Components' Sections ********/
 101
 102 /* Name of schema component */
 103 .name {
 104    color: #F93; /* Orange */
 105 }
 106
 107 /* Hierarchy table */
 108 table.hierarchy {
 109    border: 2px solid #999; /* Gray */
 110 }
 111
 112 /* XML Instance Representation table */
 113 div.sample div.contents {
 114    border: 1px dashed black;
 115 }
 116
 117
 118 /* Schema Component Representation table */
 119 div.schemaComponent div.contents {
 120    border: 2px black solid;
 121 }
 122
 123
 124 /******** Glossary Section ********/
 125
 126 /* Glossary Terms */
 127 .glossaryTerm {
 128    color: #036; /* Blue */
 129 }
 130
 131
 132 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
 133 /* Printer-version styles */
 134
 135 @media print {
 136
 137 /* Ensures that controls are hidden when printing */
 138 div#printerControls {
 139    visibility: hidden;
 140 }
 141 div#globalControls {
 142    visibility: hidden;
 143 }
 144 #legend {
 145    display: none;
 146 }
 147 #legendTOC {
 148    display: none;
 149 }
 150 #glossary {
 151    display: none;
 152 }
 153 #glossaryTOC {
 154    display: none;
 155 }
 156
 157 }
 158
 159 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
 160 /* Base styles */
 161
 162 /******** General ********/
 163
 164 /* Unordered lists */
 165 ul {
 166    margin-left: 1.5em;
 167    margin-bottom: 0em;
 168 }
 169 /* Tables */
 170 table {
 171    margin-top: 10px;
 172    margin-bottom: 10px;
 173    margin-left: 2px;
 174    margin-right: 2px;
 175 }
 176 table th, table td {
 177    font-size: 10pt;
 178    vertical-align: top;
 179    padding-top: 3px;
 180    padding-bottom: 3px;
 181    padding-left: 10px;
 182    padding-right: 10px;
 183 }
 184 table th {
 185    font-weight: bold;
 186    text-align: left;
 187 }
 188 /* Table displaying the properties of the schema components or the
 189    schema document itself */
 190 table.properties {
 191    width: 90%;
 192 }
 193 table.properties th {
 194    width: 30%;
 195 }
 196 /* Boxes that can make its content appear and disappear*/
 197 div.box {
 198    margin: 1em;
 199 }
 200    /* Box caption */
 201 div.box span.caption {
 202    font-weight: bold;
 203 }
 204    /* Button to open and close the box */
 205 div.box input.control {
 206    width: 1.4em;
 207    height: 1.4em;
 208    text-align: center;
 209    vertical-align: middle;
 210    font-size: 11pt;
 211 }
 212    /* Box contents */
 213 div.box div.contents {
 214    margin-top: 3px;
 215 }
 216
 217
 218 /******** Table of Contents Section ********/
 219
 220 /* Controls for switching between printing and viewing modes */
 221 div#printerControls {
 222    white-space: nowrap;
 223    font-weight: bold;
 224    padding: 5px;
 225    margin: 5px;
 226 }
 227 /* Controls that can collapse or expand all XML Instance
 228    Representation and Schema Component Representation boxes */
 229 div#globalControls {
 230    padding: 10px;
 231    margin: 5px;
 232 }
 233
 234
 235 /******** Schema Document Properties Section ********/
 236
 237 /* Table displaying the namespaces declared in the schema */
 238 table.namespaces th {
 239 }
 240 table.namespaces td {
 241 }
 242 /* Target namespace of the schema */
 243 span.targetNS {
 244 }
 245
 246
 247 /******** Schema Components' Sections ********/
 248
 249 /* Name of schema component */
 250 .name {
 251 }
 252
 253 /* Hierarchy table */
 254 table.hierarchy {
 255    width: 90%;
 256 }
 257 table.hierarchy th {
 258    font-weight: normal;
 259    font-style: italic;
 260    width: 20%;
 261 }
 262 table.hierarchy th, table.hierarchy td {
 263    padding: 5px;
 264 }
 265
 266 /* XML Instance Representation table */
 267 div.sample {
 268    width: 90%;
 269 }
 270 div.sample div.contents {
 271    padding: 5px;
 272    font-family: Courier New, sans-serif;
 273    font-size: 10pt;
 274 }
 275    /* Normal elements and attributes */
 276 div.sample div.contents, div.sample div.contents a {
 277    color: black;
 278 }
 279    /* Group Headers */
 280 div.sample div.contents .group, div.sample div.contents .group a {
 281    color: #999; /* Light gray */
 282 }
 283    /* Type Information */
 284 div.sample div.contents .type, div.sample div.contents .type a {
 285    color: #999; /* Light gray */
 286 }
 287    /* Occurrence Information */
 288 div.sample div.contents .occurs, div.sample div.contents .occurs a {
 289    color: #999; /* Light gray */
 290 }
 291    /* Fixed values */
 292 div.sample div.contents .fixed {
 293    color: #063; /* Green */
 294    font-weight: bold;
 295 }
 296    /* Simple type constraints */
 297 div.sample div.contents .constraint, div.sample div.contents .constraint a {
 298    color: #999; /* Light gray */
 299 }
 300    /* Elements and attributes inherited from base type */
 301 div.sample div.contents .inherited, div.sample div.contents .inherited a {
 302    color: #666; /* Dark gray */
 303 }
 304    /* Elements and attributes added to or changed from base type */
 305 div.sample div.contents .newFields {
 306    font-weight: bold;
 307 }
 308    /* Other type of information */
 309 div.sample div.contents .other, div.sample div.contents .other a {
 310    color: #369; /* Blue */
 311    font-style: italic;
 312 }
 313    /* Link to open up window displaying documentation */
 314 div.sample div.contents a.documentation {
 315    text-decoration: none;
 316    padding-left: 3px;
 317    padding-right: 3px;
 318    padding-top: 0px;
 319    padding-bottom: 0px;
 320    font-weight: bold;
 321    font-size: 11pt;
 322    background-color: #FFD;
 323    color: #069;
 324 }
 325    /* Invert colors when hovering over link to open up window
 326       displaying documentation */
 327 div.sample div.contents a.documentation:hover {
 328    color: #FFD;
 329    background-color: #069;
 330 }
 331
 332 /* Schema Component Representation table */
 333 div.schemaComponent {
 334    width: 90%;
 335 }
 336 div.schemaComponent div.contents {
 337    font-family: Courier New, sans-serif;
 338    font-size: 10pt;
 339    padding: 5px;
 340 }
 341    /* Syntax characters */
 342 div.schemaComponent div.contents {
 343    color: #00f; /* blue */
 344 }
 345    /* Element and attribute tags */
 346 div.schemaComponent div.contents .scTag {
 347    color: #933; /* maroon */
 348 }
 349    /* Element and attribute content */
 350 div.schemaComponent div.contents .scContent, div.schemaComponent div.contents .scContent a {
 351    color: black;
 352    font-weight: bold;
 353 }
 354    /* Comments */
 355 div.schemaComponent div.contents .comment {
 356    color: #999; /* Light gray */
 357 }
 358
 359 /******** Legend Section ********/
 360
 361 div#legend table, div#legend div {
 362    margin-bottom: 3px;
 363 }
 364 div#legend div.hint {
 365    color: #999; /* Light gray */
 366    width: 90%;
 367    margin-left: 1em;
 368    margin-bottom: 2em;
 369 }
 370
 371
 372 /******** Glossary Section ********/
 373
 374 /* Glossary Terms */
 375 .glossaryTerm {
 376    font-weight: bold;
 377 }
 378
 379 /********* Details *************/
 380 .detailsToc {
 381   color: #666; /* Light gray */
 382 }
 383
 384 .details {
 385   color: #666; /* Light gray */
 386   text-decoration:none;
 387 }
 388
 389 /******** Footer ********/
 390
 391 .footer {
 392    font-size: 8pt;
 393 }
 394 </style>
 395       <script type="text/javascript">
 396 <!--
 397           /* IDs of XML Instance Representation boxes */
 398 var xiBoxes = new Array('h270234806_xibox', 'h155831896_xibox', 'h535307528_xibox', 'h-1124608460_xibox', 'h888650454_xibox', 'h712147427_xibox', 'h518348337_xibox', 'h-1794244794_xibox', 'h-213750342_xibox', 'h259010940_xibox', 'h-1389097534_xibox', 'h-1122459339_xibox', 'h1358103055_xibox', 'h-1514309680_xibox', 'h1535743041_xibox', 'h917087604_xibox', 'h-494260170_xibox', 'h890448016_xibox', 'h-1670259669_xibox', 'h-676012345_xibox', 'h-993584945_xibox', 'h-853091232_xibox', 'h-979596407_xibox', 'h-1691165380_xibox', 'h-802965662_xibox', 'h519911868_xibox', 'h192331856_xibox', 'h-1482113798_xibox', 'h577349652_xibox');
 399 /* IDs of diagram boxes */
 400 var diagramBoxes = new Array('h270234806_diagram', 'h155831896_diagram', 'h535307528_diagram', 'h-1124608460_diagram', 'h888650454_diagram', 'h712147427_diagram', 'h518348337_diagram', 'h-1794244794_diagram', 'h-213750342_diagram', 'h259010940_diagram', 'h-1389097534_diagram', 'h-1122459339_diagram', 'h1358103055_diagram', 'h-1514309680_diagram', 'h1535743041_diagram', 'h917087604_diagram', 'h-494260170_diagram', 'h890448016_diagram', 'h-1670259669_diagram', 'h-676012345_diagram', 'h-993584945_diagram', 'h-853091232_diagram', 'h-979596407_diagram', 'h-1691165380_diagram', 'h-802965662_diagram', 'h519911868_diagram', 'h192331856_diagram', 'h-1482113798_diagram', 'h577349652_diagram');
 401 /* IDs of logical diagram boxes */
 402 var logicalDiagramBoxes = new Array('h270234806_logicalDiagram');
 403 /* IDs of Schema Component Representation boxes */
 404 var scBoxes = new Array('schema_scbox', 'h270234806_scbox', 'h155831896_scbox', 'h535307528_scbox', 'h-1124608460_scbox', 'h888650454_scbox', 'h712147427_scbox', 'h518348337_scbox', 'h-1794244794_scbox', 'h-213750342_scbox', 'h259010940_scbox', 'h-1389097534_scbox', 'h-1122459339_scbox', 'h1358103055_scbox', 'h-1514309680_scbox', 'h1535743041_scbox', 'h917087604_scbox', 'h-494260170_scbox', 'h890448016_scbox', 'h-1670259669_scbox', 'h-676012345_scbox', 'h-993584945_scbox', 'h-853091232_scbox', 'h-979596407_scbox', 'h-1691165380_scbox', 'h-802965662_scbox', 'h519911868_scbox', 'h192331856_scbox', 'h-1482113798_scbox', 'h577349652_scbox');
 405
 406 /**
 407  * Can get the ID of the button controlling
 408  * a collapseable box by concatenating
 409  * this string onto the ID of the box itself.
 410  */
 411 var B_SFIX = "_button";
 412
 413
 414 /**
 415  * Returns an element in the current HTML document.
 416  *
 417  * @param elementID Identifier of HTML element
 418  * @return               HTML element object
 419  */
 420 function getElementObject(elementID) {
 421     var elemObj = null;
 422     if (document.getElementById) {
 423         elemObj = document.getElementById(elementID);
 424     }
 425     return elemObj;
 426 }
 427
 428 /**
 429  * Closes a collapseable box.
 430  *
 431  * @param boxObj       Collapseable box
 432  * @param buttonObj Button controlling box
 433  */
 434 function closeBox(boxObj, buttonObj) {
 435   if (boxObj == null || buttonObj == null) {
 436      // Box or button not found
 437   } else {
 438      // Change 'display' CSS property of box
 439      boxObj.style.display="none";
 440
 441      // Change text of button
 442      if (boxObj.style.display=="none") {
 443         buttonObj.value=" + ";
 444      }
 445   }
 446 }
 447
 448 /**
 449  * Opens a collapseable box.
 450  *
 451  * @param boxObj       Collapseable box
 452  * @param buttonObj Button controlling box
 453  */
 454 function openBox(boxObj, buttonObj) {
 455   if (boxObj == null || buttonObj == null) {
 456      // Box or button not found
 457   } else {
 458      // Change 'display' CSS property of box
 459      boxObj.style.display="block";
 460
 461      // Change text of button
 462      if (boxObj.style.display=="block") {
 463         buttonObj.value=" - ";
 464      }
 465   }
 466 }
 467
 468 /**
 469  * Sets the state of a collapseable box.
 470  *
 471  * @param boxID Identifier of box
 472  * @param open If true, box is "opened",
 473  *             Otherwise, box is "closed".
 474  */
 475 function setState(boxID, open) {
 476   var boxObj = getElementObject(boxID);
 477   var buttonObj = getElementObject(boxID+B_SFIX);
 478   if (boxObj == null || buttonObj == null) {
 479      // Box or button not found
 480   } else if (open) {
 481      openBox(boxObj, buttonObj);
 482      // Make button visible
 483      buttonObj.style.display="inline";
 484   } else {
 485      closeBox(boxObj, buttonObj);
 486      // Make button visible
 487      buttonObj.style.display="inline";
 488   }
 489 }
 490
 491 /**
 492  * Switches the state of a collapseable box, e.g.
 493  * if it's opened, it'll be closed, and vice versa.
 494  *
 495  * @param boxID Identifier of box
 496  */
 497 function switchState(boxID) {
 498   var boxObj = getElementObject(boxID);
 499   var buttonObj = getElementObject(boxID+B_SFIX);
 500   if (boxObj == null || buttonObj == null) {
 501      // Box or button not found
 502   } else if (boxObj.style.display=="none") {
 503      // Box is closed, so open it
 504      openBox(boxObj, buttonObj);
 505   } else if (boxObj.style.display=="block") {
 506      // Box is opened, so close it
 507      closeBox(boxObj, buttonObj);
 508   }
 509 }
 510
 511 /**
 512  * Closes all boxes in a given list.
 513  *
 514  * @param boxList Array of box IDs
 515  */
 516 function collapseAll(boxList) {
 517   var idx;
 518   for (idx = 0; idx < boxList.length; idx++) {
 519      var boxObj = getElementObject(boxList[idx]);
 520      var buttonObj = getElementObject(boxList[idx]+B_SFIX);
 521      closeBox(boxObj, buttonObj);
 522   }
 523 }
 524
 525 /**
 526  * Open all boxes in a given list.
 527  *
 528  * @param boxList Array of box IDs
 529  */
 530 function expandAll(boxList) {
 531   var idx;
 532   for (idx = 0; idx < boxList.length; idx++) {
 533      var boxObj = getElementObject(boxList[idx]);
 534      var buttonObj = getElementObject(boxList[idx]+B_SFIX);
 535      openBox(boxObj, buttonObj);
 536   }
 537 }
 538
 539 /**
 540  * Makes all the control buttons of boxes appear.
 541  *
 542  * @param boxList Array of box IDs
 543  */
 544 function viewControlButtons(boxList) {
 545     var idx;
 546     for (idx = 0; idx < boxList.length; idx++) {
 547         buttonObj = getElementObject(boxList[idx]+B_SFIX);
 548         if (buttonObj != null) {
 549             buttonObj.style.display = "inline";
 550         }
 551     }
 552 }
 553
 554 /**
 555  * Makes all the control buttons of boxes disappear.
 556  *
 557  * @param boxList Array of box IDs
 558  */
 559 function hideControlButtons(boxList) {
 560     var idx;
 561     for (idx = 0; idx < boxList.length; idx++) {
 562         buttonObj = getElementObject(boxList[idx]+B_SFIX);
 563         if (buttonObj != null) {
 564             buttonObj.style.display = "none";
 565         }
 566     }
 567 }
 568
 569 /**
 570  * Sets the page for either printing mode
 571  * or viewing mode. In printing mode, the page
 572  * is made to be more readable when printing it out.
 573  * In viewing mode, the page is more browsable.
 574  *
 575  * @param isPrinterVersion If true, display in
 576  *                                 printing mode; otherwise,
 577  *                                 in viewing mode
 578  */
 579 function displayMode(isPrinterVersion) {
 580     var obj;
 581     if (isPrinterVersion) {
 582         // Hide global control buttons
 583         obj = getElementObject("globalControls");
 584         if (obj != null) {
 585             obj.style.visibility = "hidden";
 586         }
 587         // Hide Legend
 588         obj = getElementObject("legend");
 589         if (obj != null) {
 590             obj.style.display = "none";
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 725    </head>
 726    <body>
 727       <h1>
 728          <a name="top">phyloXML 0.90</a>
 729       </h1>
 730       <div style="float: right;">
 731          <div id="printerControls" style="display:none;">
 732             <input type="checkbox" onclick="displayMode(this.checked)"/>Printer-friendly Version</div>
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 742 </script>
 743          <div id="globalControls" style="display:none">
 744             <strong>Logical Diagram:</strong>
 745             <br/>
 746             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(logicalDiagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(logicalDiagramBoxes)">Collapse All</a> ]</span>
 747             <br/>
 748             <br/>
 749             <strong>XML Instance Representation:</strong>
 750             <br/>
 751             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(xiBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(xiBoxes)">Collapse All</a> ]</span>
 752             <br/>
 753             <br/>
 754             <strong>Diagram:</strong>
 755             <br/>
 756             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(diagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(diagramBoxes)">Collapse All</a> ]</span>
 757             <br/>
 758             <br/>
 759             <strong>Schema Component Representation:</strong>
 760             <br/>
 761             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(scBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(scBoxes)">Collapse All</a> ]</span>
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 773       </div>
 774       <h2>Table of Contents</h2>
 775       <ul>
 776          <li>
 777             <a href="#SchemaProperties">Schema Document Properties</a>
 778          </li>
 779          <li>
 780             <a href="#SchemaDeclarations">Global Declarations</a>
 781             <ul>
 782                <li>
 783                   <a href="#h270234806">Element: <strong>phyloxml</strong>
 784                   </a>
 785                </li>
 786             </ul>
 787          </li>
 788          <li>
 789             <a href="#SchemaDefinitions">Global Definitions</a>
 790             <ul>
 791                <li>
 792                   <a href="#h917087604">Complex Type: <strong>Annotation</strong>
 793                   </a>
 794                </li>
 795                <li>
 796                   <a href="#h1535743041">Complex Type: <strong>BinaryCharacterList</strong>
 797                   </a>
 798                </li>
 799                <li>
 800                   <a href="#h-1514309680">Complex Type: <strong>BinaryCharacters</strong>
 801                   </a>
 802                </li>
 803                <li>
 804                   <a href="#h-1691165380">Complex Type: <strong>BranchColor</strong>
 805                   </a>
 806                </li>
 807                <li>
 808                   <a href="#h-1124608460">Complex Type: <strong>Clade</strong>
 809                   </a>
 810                </li>
 811                <li>
 812                   <a href="#h192331856">Complex Type: <strong>CladeRelation</strong>
 813                   </a>
 814                </li>
 815                <li>
 816                   <a href="#h-993584945">Complex Type: <strong>Confidence</strong>
 817                   </a>
 818                </li>
 819                <li>
 820                   <a href="#h-494260170">Complex Type: <strong>Custom</strong>
 821                   </a>
 822                </li>
 823                <li>
 824                   <a href="#h259010940">Complex Type: <strong>DomainArchitecture</strong>
 825                   </a>
 826                </li>
 827                <li>
 828                   <a href="#h-1122459339">Complex Type: <strong>Event</strong>
 829                   </a>
 830                </li>
 831                <li>
 832                   <a href="#h-853091232">Complex Type: <strong>Id</strong>
 833                   </a>
 834                </li>
 835                <li>
 836                   <a href="#h535307528">Complex Type: <strong>Phylogeny</strong>
 837                   </a>
 838                </li>
 839                <li>
 840                   <a href="#h155831896">Complex Type: <strong>Phyloxml</strong>
 841                   </a>
 842                </li>
 843                <li>
 844                   <a href="#h-1389097534">Complex Type: <strong>ProteinDomain</strong>
 845                   </a>
 846                </li>
 847                <li>
 848                   <a href="#h-1794244794">Complex Type: <strong>Sequence</strong>
 849                   </a>
 850                </li>
 851                <li>
 852                   <a href="#h-802965662">Complex Type: <strong>SequenceRelation</strong>
 853                   </a>
 854                </li>
 855                <li>
 856                   <a href="#h888650454">Complex Type: <strong>Taxonomy</strong>
 857                   </a>
 858                </li>
 859                <li>
 860                   <a href="#h-676012345">Complex Type: <strong>Uri</strong>
 861                   </a>
 862                </li>
 863                <li>
 864                   <a href="#h-1670259669">Simple Type: <strong>CustomProperty</strong>
 865                   </a>
 866                </li>
 867                <li>
 868                   <a href="#h890448016">Simple Type: <strong>CustomType</strong>
 869                   </a>
 870                </li>
 871                <li>
 872                   <a href="#h-979596407">Simple Type: <strong>Distribution</strong>
 873                   </a>
 874                </li>
 875                <li>
 876                   <a href="#h1358103055">Simple Type: <strong>EventType</strong>
 877                   </a>
 878                </li>
 879                <li>
 880                   <a href="#h-213750342">Simple Type: <strong>MolSeq</strong>
 881                   </a>
 882                </li>
 883                <li>
 884                   <a href="#h518348337">Simple Type: <strong>Rank</strong>
 885                   </a>
 886                </li>
 887                <li>
 888                   <a href="#h519911868">Simple Type: <strong>SequenceRelationType</strong>
 889                   </a>
 890                </li>
 891                <li>
 892                   <a href="#h712147427">Simple Type: <strong>TaxonomyCode</strong>
 893                   </a>
 894                </li>
 895                <li>
 896                   <a href="#h577349652">Simple Type: <strong>id_ref</strong>
 897                   </a>
 898                </li>
 899                <li>
 900                   <a href="#h-1482113798">Simple Type: <strong>id_source</strong>
 901                   </a>
 902                </li>
 903             </ul>
 904          </li>
 905       </ul>
 906       <ul id="legendTOC" style="margin-top: 0em">
 907          <li>
 908             <a href="#Legend">Legend</a>
 909          </li>
 910       </ul>
 911       <ul id="glossaryTOC" style="margin-top: 0em">
 912          <li>
 913             <a href="#Glossary">Glossary</a>
 914          </li>
 915       </ul>
 916       <div style="text-align: right; clear: both;">
 917          <a href="#top">top</a>
 918       </div>
 919       <hr/>
 920       <h2>
 921          <a name="SchemaProperties">Schema Document Properties</a>
 922       </h2>
 923       <table class="properties">
 924          <tr>
 925             <th>
 926                <a title="Look up 'Target Namespace' in glossary"
 927                   href="phyloxml.xsd.html#term_TargetNS">Target Namespace</a>
 928             </th>
 929             <td>
 930                <span class="targetNS">http://www.phyloxml.org</span>
 931             </td>
 932          </tr>
 933          <tr>
 934             <th>Element and Attribute Namespaces</th>
 935             <td>
 936                <ul>
 937                   <li>Global element and attribute declarations belong to this schema's target namespace.</li>
 938                   <li>By default, local element declarations belong to this schema's target namespace.</li>
 939                   <li>By default, local attribute declarations have no namespace.</li>
 940                </ul>
 941             </td>
 942          </tr>
 943       </table>
 944       <h3>Declared Namespaces</h3>
 945       <table class="namespaces">
 946          <tr>
 947             <th>Prefix</th>
 948             <th>Namespace</th>
 949          </tr>
 950          <tr>
 951             <td>
 952                <a name="ns_xml">xml</a>
 953             </td>
 954             <td>http://www.w3.org/XML/1998/namespace</td>
 955          </tr>
 956          <tr>
 957             <td>
 958                <a name="ns_phy">phy</a>
 959             </td>
 960             <td>
 961                <span class="targetNS">http://www.phyloxml.org</span>
 962             </td>
 963          </tr>
 964          <tr>
 965             <td>
 966                <a name="ns_xs">xs</a>
 967             </td>
 968             <td>http://www.w3.org/2001/XMLSchema</td>
 969          </tr>
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 977          </div>
 978          <div id="schema_scbox" class="contents">
 979             <div style="margin-left: 0em">&lt;<span class="scTag">xs:schema</span>
 980                <span class="scTag">targetNamespace</span>="<span class="scContent">http://www.phyloxml.org</span>" <span class="scTag">elementFormDefault</span>="<span class="scContent">qualified</span>" <span class="scTag">attributeFormDefault</span>="<span class="scContent">unqualified</span>"&gt;<div class="scContent" style="margin-left: 1.5em">...</div>&lt;/<span class="scTag">xs:schema</span>&gt;</div>
 981          </div>
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 987       </div>
 988       <div style="text-align: right; clear: both;">
 989          <a href="#top">top</a>
 990       </div>
 991       <hr/>
 992       <h2>
 993          <a name="SchemaDeclarations">Global Declarations</a>
 994       </h2>
 995       <h3>Element: <a name="h270234806" class="name">phyloxml</a>
 996       </h3>
 997       <table class="properties">
 998          <tr>
 999             <th>Name</th>
1000             <td>phyloxml</td>
1001          </tr>
1002          <tr>
1003             <th>Type</th>
1004             <td>
1005                <span class="type">
1006                   <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phyloxml&#34; type definition." href="#h155831896">Phyloxml</a>
1007                </span>
1008             </td>
1009          </tr>
1010          <tr>
1011             <th>
1012                <a title="Look up 'Nillable' in glossary" href="phyloxml.xsd.html#term_Nillable">Nillable</a>
1013             </th>
1014             <td>no</td>
1015          </tr>
1016          <tr>
1017             <th>
1018                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1019             </th>
1020             <td>no</td>
1021          </tr>
1022       </table>
1023       <div class="sample box">
1024          <div>
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1026                    onclick="switchState('h270234806_logicalDiagram'); return false;"
1027                    style="display: none"/>
1028             <span class="caption">Logical Diagram</span>
1029          </div>
1030          <div id="h270234806_logicalDiagram" class="contents">
1031             <img usemap="#h1900732667" src="schemaDiagrams/h1900732667.png"/>
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1041       </div>
1042       <div class="sample box">
1043          <div>
1044             <input type="button" id="h270234806_xibox_button" class="control"
1045                    onclick="switchState('h270234806_xibox'); return false;"
1046                    style="display: none"/>
1047             <span class="caption">XML Instance Representation</span>
1048          </div>
1049          <div id="h270234806_xibox" class="contents">
1050             <div style="margin-left: 0em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml&gt; <br/>
1051                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
1052                   <span class="occurs">[1..*]</span>
1053                </span>
1054                <br/>
1055                <div style="margin-left: 3em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="type">
1056                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
1057                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="occurs">[0..*]</span>
1058                </div>
1059                <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1060                </div>
1061                <span class="group" style="margin-left: 1.5em">End Sequence</span>
1062                <br/>&lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml&gt;</div>
1063          </div>
1064          <script type="text/javascript">
1065 <!--
1066           setState('h270234806_xibox', true);
1067 // -->
1068 </script>
1069       </div>
1070       <div class="sample box">
1071          <div>
1072             <input type="button" id="h270234806_diagram_button" class="control"
1073                    onclick="switchState('h270234806_diagram'); return false;"
1074                    style="display: none"/>
1075             <span class="caption">Diagram</span>
1076          </div>
1077          <div id="h270234806_diagram" class="contents">
1078             <img usemap="#h482833585" src="schemaDiagrams/h482833585.png"/>
1079             <!--
1080             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h482833585.map--><map name="h482833585">
1081                <area shape="rect" alt="h535307528" coords="344,10,463,50"
1082                      href="phyloxml.xsd.html#h535307528"/>
1083
1084             </map>
1085          </div>
1086          <script type="text/javascript">
1087 <!--
1088           setState('h270234806_diagram', true);
1089 // -->
1090 </script>
1091       </div>
1092       <div class="schemaComponent box">
1093          <div>
1094             <input type="button" id="h270234806_scbox_button" class="control"
1095                    onclick="switchState('h270234806_scbox'); return false;"
1096                    style="display: none"/>
1097             <span class="caption">Schema Component Representation</span>
1098          </div>
1099          <div id="h270234806_scbox" class="contents">
1100             <div style="margin-left: 0em">&lt;<span class="scTag">xs:element</span>
1101                <span class="scTag">name</span>="<span class="scContent">phyloxml</span>" <span class="scTag">type</span>="<span class="scContent">
1102                   <span class="type">
1103                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phyloxml&#34; type definition." href="#h155831896">Phyloxml</a>
1104                   </span>
1105                </span>"/&gt;</div>
1106          </div>
1107          <script type="text/javascript">
1108 <!--
1109           setState('h270234806_scbox', false);
1110 // -->
1111 </script>
1112       </div>
1113       <div style="text-align: right; clear: both;">
1114          <a href="#top">top</a>
1115       </div>
1116       <hr/>
1117       <h2>
1118          <a name="SchemaDefinitions">Global Definitions</a>
1119       </h2>
1120       <h3>Complex Type: <a name="h917087604" class="name">Annotation</a>
1121       </h3>
1122       <table class="hierarchy">
1123          <tr>
1124             <th>Super-types:</th>
1125             <td>None</td>
1126          </tr>
1127          <tr>
1128             <th>Sub-types:</th>
1129             <td>None</td>
1130          </tr>
1131       </table>
1132       <table class="properties">
1133          <tr>
1134             <th>Name</th>
1135             <td>Annotation</td>
1136          </tr>
1137          <tr>
1138             <th>Used by (from the same schema document)</th>
1139             <td>Complex Type <b>
1140                   <a href="#h-1794244794">Sequence</a>
1141                </b>
1142             </td>
1143          </tr>
1144          <tr>
1145             <th>
1146                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1147             </th>
1148             <td>no</td>
1149          </tr>
1150       </table>
1151       <div class="sample box">
1152          <div>
1153             <input type="button" id="h917087604_xibox_button" class="control"
1154                    onclick="switchState('h917087604_xibox'); return false;"
1155                    style="display: none"/>
1156             <span class="caption">XML Instance Representation</span>
1157          </div>
1158          <div id="h917087604_xibox" class="contents">
1159             <div style="margin-left: 0em">&lt;...<br/>
1160                <span style="margin-left: 0.5em"> type="<span class="type">
1161                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1162                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1163                <span class="other" style="margin-left: 1.5em">&lt;!-- Mixed content --&gt;</span>
1164                <br/>
1165                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
1166                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
1167                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
1168                </div>
1169                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1170                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1171                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
1172                </div>
1173                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
1174                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
1175                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
1176                </div>&lt;/...&gt;</div>
1177          </div>
1178          <script type="text/javascript">
1179 <!--
1180           setState('h917087604_xibox', true);
1181 // -->
1182 </script>
1183       </div>
1184       <div class="sample box">
1185          <div>
1186             <input type="button" id="h917087604_diagram_button" class="control"
1187                    onclick="switchState('h917087604_diagram'); return false;"
1188                    style="display: none"/>
1189             <span class="caption">Diagram</span>
1190          </div>
1191          <div id="h917087604_diagram" class="contents">
1192             <img usemap="#h624412339" src="schemaDiagrams/h624412339.png"/>
1193             <!--
1194             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h624412339.map--><map name="h624412339">
1195                <area shape="rect" alt="h-853091232" coords="236,0,312,40"
1196                      href="phyloxml.xsd.html#h-853091232"/>
1197
1198                <area shape="rect" alt="h-993584945" coords="236,50,362,90"
1199                      href="phyloxml.xsd.html#h-993584945"/>
1200
1201                <area shape="rect" alt="h-676012345" coords="236,100,313,140"
1202                      href="phyloxml.xsd.html#h-676012345"/>
1203
1204             </map>
1205          </div>
1206          <script type="text/javascript">
1207 <!--
1208           setState('h917087604_diagram', true);
1209 // -->
1210 </script>
1211       </div>
1212       <div class="schemaComponent box">
1213          <div>
1214             <input type="button" id="h917087604_scbox_button" class="control"
1215                    onclick="switchState('h917087604_scbox'); return false;"
1216                    style="display: none"/>
1217             <span class="caption">Schema Component Representation</span>
1218          </div>
1219          <div id="h917087604_scbox" class="contents">
1220             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1221                <span class="scTag">name</span>="<span class="scContent">Annotation</span>" <span class="scTag">mixed</span>="<span class="scContent">true</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1222                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
1223                         <span class="type">
1224                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
1225                         </span>
1226                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1227                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1228                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1229                         <span class="type">
1230                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1231                         </span>
1232                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1233                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1234                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
1235                         <span class="type">
1236                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
1237                         </span>
1238                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1239                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1240                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1241                      <span class="type">
1242                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1243                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1244          </div>
1245          <script type="text/javascript">
1246 <!--
1247           setState('h917087604_scbox', false);
1248 // -->
1249 </script>
1250       </div>
1251       <div style="text-align: right; clear: both;">
1252          <a href="#top">top</a>
1253       </div>
1254       <hr/>
1255       <h3>Complex Type: <a name="h1535743041" class="name">BinaryCharacterList</a>
1256       </h3>
1257       <table class="hierarchy">
1258          <tr>
1259             <th>Super-types:</th>
1260             <td>None</td>
1261          </tr>
1262          <tr>
1263             <th>Sub-types:</th>
1264             <td>None</td>
1265          </tr>
1266       </table>
1267       <table class="properties">
1268          <tr>
1269             <th>Name</th>
1270             <td>BinaryCharacterList</td>
1271          </tr>
1272          <tr>
1273             <th>Used by (from the same schema document)</th>
1274             <td>Complex Type <b>
1275                   <a href="#h-1514309680">BinaryCharacters</a>
1276                </b>, Complex Type <b>
1277                   <a href="#h-1514309680">BinaryCharacters</a>
1278                </b>, Complex Type <b>
1279                   <a href="#h-1514309680">BinaryCharacters</a>
1280                </b>, Complex Type <b>
1281                   <a href="#h-1514309680">BinaryCharacters</a>
1282                </b>
1283             </td>
1284          </tr>
1285          <tr>
1286             <th>
1287                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1288             </th>
1289             <td>no</td>
1290          </tr>
1291       </table>
1292       <div class="sample box">
1293          <div>
1294             <input type="button" id="h1535743041_xibox_button" class="control"
1295                    onclick="switchState('h1535743041_xibox'); return false;"
1296                    style="display: none"/>
1297             <span class="caption">XML Instance Representation</span>
1298          </div>
1299          <div id="h1535743041_xibox" class="contents">
1300             <div style="margin-left: 0em">&lt;...&gt; <br/>
1301                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc&gt; <span class="type">
1302                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc&gt; <span class="occurs">[1..*]</span>
1303                </div>&lt;/...&gt;</div>
1304          </div>
1305          <script type="text/javascript">
1306 <!--
1307           setState('h1535743041_xibox', true);
1308 // -->
1309 </script>
1310       </div>
1311       <div class="sample box">
1312          <div>
1313             <input type="button" id="h1535743041_diagram_button" class="control"
1314                    onclick="switchState('h1535743041_diagram'); return false;"
1315                    style="display: none"/>
1316             <span class="caption">Diagram</span>
1317          </div>
1318          <div id="h1535743041_diagram" class="contents">
1319             <img usemap="#h508496390" src="schemaDiagrams/h508496390.png"/>
1320             <!--
1321             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h508496390.map--><map name="h508496390">
1322 </map>
1323          </div>
1324          <script type="text/javascript">
1325 <!--
1326           setState('h1535743041_diagram', true);
1327 // -->
1328 </script>
1329       </div>
1330       <div class="schemaComponent box">
1331          <div>
1332             <input type="button" id="h1535743041_scbox_button" class="control"
1333                    onclick="switchState('h1535743041_scbox'); return false;"
1334                    style="display: none"/>
1335             <span class="caption">Schema Component Representation</span>
1336          </div>
1337          <div id="h1535743041_scbox" class="contents">
1338             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1339                <span class="scTag">name</span>="<span class="scContent">BinaryCharacterList</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1340                      <span class="scTag">name</span>="<span class="scContent">bc</span>" <span class="scTag">type</span>="<span class="scContent">
1341                         <span class="type">
1342                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1343                      </span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1344          </div>
1345          <script type="text/javascript">
1346 <!--
1347           setState('h1535743041_scbox', false);
1348 // -->
1349 </script>
1350       </div>
1351       <div style="text-align: right; clear: both;">
1352          <a href="#top">top</a>
1353       </div>
1354       <hr/>
1355       <h3>Complex Type: <a name="h-1514309680" class="name">BinaryCharacters</a>
1356       </h3>
1357       <table class="hierarchy">
1358          <tr>
1359             <th>Super-types:</th>
1360             <td>None</td>
1361          </tr>
1362          <tr>
1363             <th>Sub-types:</th>
1364             <td>None</td>
1365          </tr>
1366       </table>
1367       <table class="properties">
1368          <tr>
1369             <th>Name</th>
1370             <td>BinaryCharacters</td>
1371          </tr>
1372          <tr>
1373             <th>Used by (from the same schema document)</th>
1374             <td>Complex Type <b>
1375                   <a href="#h-1124608460">Clade</a>
1376                </b>
1377             </td>
1378          </tr>
1379          <tr>
1380             <th>
1381                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1382             </th>
1383             <td>no</td>
1384          </tr>
1385       </table>
1386       <div class="sample box">
1387          <div>
1388             <input type="button" id="h-1514309680_xibox_button" class="control"
1389                    onclick="switchState('h-1514309680_xibox'); return false;"
1390                    style="display: none"/>
1391             <span class="caption">XML Instance Representation</span>
1392          </div>
1393          <div id="h-1514309680_xibox" class="contents">
1394             <div style="margin-left: 0em">&lt;...<br/>
1395                <span style="margin-left: 0.5em"> type="<span class="type">
1396                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1397                   <span class="occurs">[0..1]</span>"</span>
1398                <br/>
1399                <span style="margin-left: 0.5em"> gained_count="<span class="type">
1400                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1401                   <span class="occurs">[0..1]</span>"</span>
1402                <br/>
1403                <span style="margin-left: 0.5em"> lost_count="<span class="type">
1404                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1405                   <span class="occurs">[0..1]</span>"</span>
1406                <br/>
1407                <span style="margin-left: 0.5em"> present_count="<span class="type">
1408                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1409                   <span class="occurs">[0..1]</span>"</span>
1410                <br/>
1411                <span style="margin-left: 0.5em"> absent_count="<span class="type">
1412                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1413                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1414                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained&gt; <span class="type">
1415                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1416                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained&gt; <span class="occurs">[0..1]</span>
1417                </div>
1418                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost&gt; <span class="type">
1419                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1420                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost&gt; <span class="occurs">[0..1]</span>
1421                </div>
1422                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present&gt; <span class="type">
1423                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1424                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present&gt; <span class="occurs">[0..1]</span>
1425                </div>
1426                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent&gt; <span class="type">
1427                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1428                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent&gt; <span class="occurs">[0..1]</span>
1429                </div>&lt;/...&gt;</div>
1430          </div>
1431          <script type="text/javascript">
1432 <!--
1433           setState('h-1514309680_xibox', true);
1434 // -->
1435 </script>
1436       </div>
1437       <div class="sample box">
1438          <div>
1439             <input type="button" id="h-1514309680_diagram_button" class="control"
1440                    onclick="switchState('h-1514309680_diagram'); return false;"
1441                    style="display: none"/>
1442             <span class="caption">Diagram</span>
1443          </div>
1444          <div id="h-1514309680_diagram" class="contents">
1445             <img usemap="#h-81115689" src="schemaDiagrams/h-81115689.png"/>
1446             <!--
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1448                <area shape="rect" alt="h1535743041" coords="278,0,376,40"
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1466 </script>
1467       </div>
1468       <div class="schemaComponent box">
1469          <div>
1470             <input type="button" id="h-1514309680_scbox_button" class="control"
1471                    onclick="switchState('h-1514309680_scbox'); return false;"
1472                    style="display: none"/>
1473             <span class="caption">Schema Component Representation</span>
1474          </div>
1475          <div id="h-1514309680_scbox" class="contents">
1476             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1477                <span class="scTag">name</span>="<span class="scContent">BinaryCharacters</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1478                      <span class="scTag">name</span>="<span class="scContent">gained</span>" <span class="scTag">type</span>="<span class="scContent">
1479                         <span class="type">
1480                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1481                         </span>
1482                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1483                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1484                      <span class="scTag">name</span>="<span class="scContent">lost</span>" <span class="scTag">type</span>="<span class="scContent">
1485                         <span class="type">
1486                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1487                         </span>
1488                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1489                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1490                      <span class="scTag">name</span>="<span class="scContent">present</span>" <span class="scTag">type</span>="<span class="scContent">
1491                         <span class="type">
1492                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1493                         </span>
1494                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1495                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1496                      <span class="scTag">name</span>="<span class="scContent">absent</span>" <span class="scTag">type</span>="<span class="scContent">
1497                         <span class="type">
1498                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1499                         </span>
1500                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1501                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1502                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1503                      <span class="type">
1504                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1505                   </span>"/&gt;</div>
1506                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1507                   <span class="scTag">name</span>="<span class="scContent">gained_count</span>" <span class="scTag">type</span>="<span class="scContent">
1508                      <span class="type">
1509                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1510                   </span>"/&gt;</div>
1511                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1512                   <span class="scTag">name</span>="<span class="scContent">lost_count</span>" <span class="scTag">type</span>="<span class="scContent">
1513                      <span class="type">
1514                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1515                   </span>"/&gt;</div>
1516                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1517                   <span class="scTag">name</span>="<span class="scContent">present_count</span>" <span class="scTag">type</span>="<span class="scContent">
1518                      <span class="type">
1519                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1520                   </span>"/&gt;</div>
1521                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1522                   <span class="scTag">name</span>="<span class="scContent">absent_count</span>" <span class="scTag">type</span>="<span class="scContent">
1523                      <span class="type">
1524                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1525                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1526          </div>
1527          <script type="text/javascript">
1528 <!--
1529           setState('h-1514309680_scbox', false);
1530 // -->
1531 </script>
1532       </div>
1533       <div style="text-align: right; clear: both;">
1534          <a href="#top">top</a>
1535       </div>
1536       <hr/>
1537       <h3>Complex Type: <a name="h-1691165380" class="name">BranchColor</a>
1538       </h3>
1539       <table class="hierarchy">
1540          <tr>
1541             <th>Super-types:</th>
1542             <td>None</td>
1543          </tr>
1544          <tr>
1545             <th>Sub-types:</th>
1546             <td>None</td>
1547          </tr>
1548       </table>
1549       <table class="properties">
1550          <tr>
1551             <th>Name</th>
1552             <td>BranchColor</td>
1553          </tr>
1554          <tr>
1555             <th>Used by (from the same schema document)</th>
1556             <td>Complex Type <b>
1557                   <a href="#h-1124608460">Clade</a>
1558                </b>
1559             </td>
1560          </tr>
1561          <tr>
1562             <th>
1563                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1564             </th>
1565             <td>no</td>
1566          </tr>
1567       </table>
1568       <div class="sample box">
1569          <div>
1570             <input type="button" id="h-1691165380_xibox_button" class="control"
1571                    onclick="switchState('h-1691165380_xibox'); return false;"
1572                    style="display: none"/>
1573             <span class="caption">XML Instance Representation</span>
1574          </div>
1575          <div id="h-1691165380_xibox" class="contents">
1576             <div style="margin-left: 0em">&lt;...&gt; <br/>
1577                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red&gt; <span class="type">
1578                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red&gt; <span class="occurs">[1]</span>
1579                </div>
1580                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green&gt; <span class="type">
1581                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green&gt; <span class="occurs">[1]</span>
1582                </div>
1583                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue&gt; <span class="type">
1584                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue&gt; <span class="occurs">[1]</span>
1585                </div>&lt;/...&gt;</div>
1586          </div>
1587          <script type="text/javascript">
1588 <!--
1589           setState('h-1691165380_xibox', true);
1590 // -->
1591 </script>
1592       </div>
1593       <div class="sample box">
1594          <div>
1595             <input type="button" id="h-1691165380_diagram_button" class="control"
1596                    onclick="switchState('h-1691165380_diagram'); return false;"
1597                    style="display: none"/>
1598             <span class="caption">Diagram</span>
1599          </div>
1600          <div id="h-1691165380_diagram" class="contents">
1601             <img usemap="#h-203375637" src="schemaDiagrams/h-203375637.png"/>
1602             <!--
1603             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-203375637.map--><map name="h-203375637">
1604 </map>
1605          </div>
1606          <script type="text/javascript">
1607 <!--
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1612       <div class="schemaComponent box">
1613          <div>
1614             <input type="button" id="h-1691165380_scbox_button" class="control"
1615                    onclick="switchState('h-1691165380_scbox'); return false;"
1616                    style="display: none"/>
1617             <span class="caption">Schema Component Representation</span>
1618          </div>
1619          <div id="h-1691165380_scbox" class="contents">
1620             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1621                <span class="scTag">name</span>="<span class="scContent">BranchColor</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1622                      <span class="scTag">name</span>="<span class="scContent">red</span>" <span class="scTag">type</span>="<span class="scContent">
1623                         <span class="type">
1624                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1625                      </span>"/&gt;</div>
1626                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1627                      <span class="scTag">name</span>="<span class="scContent">green</span>" <span class="scTag">type</span>="<span class="scContent">
1628                         <span class="type">
1629                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1630                      </span>"/&gt;</div>
1631                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1632                      <span class="scTag">name</span>="<span class="scContent">blue</span>" <span class="scTag">type</span>="<span class="scContent">
1633                         <span class="type">
1634                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1635                      </span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1636          </div>
1637          <script type="text/javascript">
1638 <!--
1639           setState('h-1691165380_scbox', false);
1640 // -->
1641 </script>
1642       </div>
1643       <div style="text-align: right; clear: both;">
1644          <a href="#top">top</a>
1645       </div>
1646       <hr/>
1647       <h3>Complex Type: <a name="h-1124608460" class="name">Clade</a>
1648       </h3>
1649       <table class="hierarchy">
1650          <tr>
1651             <th>Super-types:</th>
1652             <td>None</td>
1653          </tr>
1654          <tr>
1655             <th>Sub-types:</th>
1656             <td>None</td>
1657          </tr>
1658       </table>
1659       <table class="properties">
1660          <tr>
1661             <th>Name</th>
1662             <td>Clade</td>
1663          </tr>
1664          <tr>
1665             <th>Used by (from the same schema document)</th>
1666             <td>Complex Type <b>
1667                   <a href="#h535307528">Phylogeny</a>
1668                </b>, Complex Type <b>
1669                   <a href="#h-1124608460">Clade</a>
1670                </b>
1671             </td>
1672          </tr>
1673          <tr>
1674             <th>
1675                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1676             </th>
1677             <td>no</td>
1678          </tr>
1679       </table>
1680       <div class="sample box">
1681          <div>
1682             <input type="button" id="h-1124608460_xibox_button" class="control"
1683                    onclick="switchState('h-1124608460_xibox'); return false;"
1684                    style="display: none"/>
1685             <span class="caption">XML Instance Representation</span>
1686          </div>
1687          <div id="h-1124608460_xibox" class="contents">
1688             <div style="margin-left: 0em">&lt;...<br/>
1689                <span style="margin-left: 0.5em"> distance="<span class="type">
1690                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1691                   <span class="occurs">[0..1]</span>"</span>
1692                <br/>
1693                <span style="margin-left: 0.5em"> id_source="<span class="type">
1694                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
1695                   </span>
1696                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1697                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
1698                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
1699                </div>
1700                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distance&gt; <span class="type">
1701                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distance&gt; <span class="occurs">[0..1]</span>
1702                </div>
1703                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1704                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1705                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..*]</span>
1706                </div>
1707                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width&gt; <span class="type">
1708                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width&gt; <span class="occurs">[0..1]</span>
1709                </div>
1710                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color&gt; <span class="type">
1711                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BranchColor&#34; type definition." href="#h-1691165380">BranchColor</a>
1712                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color&gt; <span class="occurs">[0..1]</span>
1713                </div>
1714                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id&gt; <span class="type">
1715                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
1716                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id&gt; <span class="occurs">[0..1]</span>
1717                </div>
1718                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy&gt; <span class="type">
1719                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Taxonomy&#34; type definition." href="#h888650454">Taxonomy</a>
1720                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy&gt; <span class="occurs">[0..*]</span>
1721                </div>
1722                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence&gt; <span class="type">
1723                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Sequence&#34; type definition." href="#h-1794244794">Sequence</a>
1724                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence&gt; <span class="occurs">[0..*]</span>
1725                </div>
1726                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:event&gt; <span class="type">
1727                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Event&#34; type definition." href="#h-1122459339">Event</a>
1728                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:event&gt; <span class="occurs">[0..1]</span>
1729                </div>
1730                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters&gt; <span class="type">
1731                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacters&#34; type definition." href="#h-1514309680">BinaryCharacters</a>
1732                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters&gt; <span class="occurs">[0..1]</span>
1733                </div>
1734                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution&gt; <span class="type">
1735                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution&gt; <span class="occurs">[0..1]</span>
1736                </div>
1737                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="type">
1738                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="occurs">[0..1]</span>
1739                </div>
1740                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="type">
1741                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
1742                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="occurs">[0..*]</span>
1743                </div>
1744                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom&gt; <span class="type">
1745                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Custom&#34; type definition." href="#h-494260170">Custom</a>
1746                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom&gt; <span class="occurs">[0..1]</span>
1747                </div>
1748                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1749                </div>&lt;/...&gt;</div>
1750          </div>
1751          <script type="text/javascript">
1752 <!--
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1755 </script>
1756       </div>
1757       <div class="sample box">
1758          <div>
1759             <input type="button" id="h-1124608460_diagram_button" class="control"
1760                    onclick="switchState('h-1124608460_diagram'); return false;"
1761                    style="display: none"/>
1762             <span class="caption">Diagram</span>
1763          </div>
1764          <div id="h-1124608460_diagram" class="contents">
1765             <img usemap="#h854822387" src="schemaDiagrams/h854822387.png"/>
1766             <!--
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1768                <area shape="rect" alt="h-993584945" coords="201,100,327,140"
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1770
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1776
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1803       <div class="schemaComponent box">
1804          <div>
1805             <input type="button" id="h-1124608460_scbox_button" class="control"
1806                    onclick="switchState('h-1124608460_scbox'); return false;"
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1808             <span class="caption">Schema Component Representation</span>
1809          </div>
1810          <div id="h-1124608460_scbox" class="contents">
1811             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1812                <span class="scTag">name</span>="<span class="scContent">Clade</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1813                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
1814                         <span class="type">
1815                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1816                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1817                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1818                      <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
1819                         <span class="type">
1820                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1821                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1822                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1823                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1824                         <span class="type">
1825                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1826                         </span>
1827                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
1828                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1829                      <span class="scTag">name</span>="<span class="scContent">width</span>" <span class="scTag">type</span>="<span class="scContent">
1830                         <span class="type">
1831                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1832                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1833                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1834                      <span class="scTag">name</span>="<span class="scContent">color</span>" <span class="scTag">type</span>="<span class="scContent">
1835                         <span class="type">
1836                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BranchColor&#34; type definition." href="#h-1691165380">BranchColor</a>
1837                         </span>
1838                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1839                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1840                      <span class="scTag">name</span>="<span class="scContent">node_id</span>" <span class="scTag">type</span>="<span class="scContent">
1841                         <span class="type">
1842                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
1843                         </span>
1844                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1845                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1846                      <span class="scTag">name</span>="<span class="scContent">taxonomy</span>" <span class="scTag">type</span>="<span class="scContent">
1847                         <span class="type">
1848                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Taxonomy&#34; type definition." href="#h888650454">Taxonomy</a>
1849                         </span>
1850                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
1851                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1852                      <span class="scTag">name</span>="<span class="scContent">sequence</span>" <span class="scTag">type</span>="<span class="scContent">
1853                         <span class="type">
1854                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Sequence&#34; type definition." href="#h-1794244794">Sequence</a>
1855                         </span>
1856                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
1857                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1858                      <span class="scTag">name</span>="<span class="scContent">event</span>" <span class="scTag">type</span>="<span class="scContent">
1859                         <span class="type">
1860                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Event&#34; type definition." href="#h-1122459339">Event</a>
1861                         </span>
1862                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1863                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1864                      <span class="scTag">name</span>="<span class="scContent">binary_characters</span>" <span class="scTag">type</span>="<span class="scContent">
1865                         <span class="type">
1866                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacters&#34; type definition." href="#h-1514309680">BinaryCharacters</a>
1867                         </span>
1868                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1869                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1870                      <span class="scTag">name</span>="<span class="scContent">distribution</span>" <span class="scTag">type</span>="<span class="scContent">
1871                         <span class="type">
1872                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1873                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1874                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1875                      <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
1876                         <span class="type">
1877                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1878                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1879                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1880                      <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
1881                         <span class="type">
1882                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
1883                         </span>
1884                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
1885                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1886                      <span class="scTag">name</span>="<span class="scContent">custom</span>" <span class="scTag">type</span>="<span class="scContent">
1887                         <span class="type">
1888                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Custom&#34; type definition." href="#h-494260170">Custom</a>
1889                         </span>
1890                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1891                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
1892                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1893                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1894                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
1895                      <span class="type">
1896                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1897                   </span>"/&gt;</div>
1898                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1899                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
1900                      <span class="type">
1901                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
1902                      </span>
1903                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
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1912          <a href="#top">top</a>
1913       </div>
1914       <hr/>
1915       <h3>Complex Type: <a name="h192331856" class="name">CladeRelation</a>
1916       </h3>
1917       <table class="hierarchy">
1918          <tr>
1919             <th>Super-types:</th>
1920             <td>None</td>
1921          </tr>
1922          <tr>
1923             <th>Sub-types:</th>
1924             <td>None</td>
1925          </tr>
1926       </table>
1927       <table class="properties">
1928          <tr>
1929             <th>Name</th>
1930             <td>CladeRelation</td>
1931          </tr>
1932          <tr>
1933             <th>Used by (from the same schema document)</th>
1934             <td>Complex Type <b>
1935                   <a href="#h535307528">Phylogeny</a>
1936                </b>
1937             </td>
1938          </tr>
1939          <tr>
1940             <th>
1941                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1942             </th>
1943             <td>no</td>
1944          </tr>
1945       </table>
1946       <div class="sample box">
1947          <div>
1948             <input type="button" id="h192331856_xibox_button" class="control"
1949                    onclick="switchState('h192331856_xibox'); return false;"
1950                    style="display: none"/>
1951             <span class="caption">XML Instance Representation</span>
1952          </div>
1953          <div id="h192331856_xibox" class="contents">
1954             <div style="margin-left: 0em">&lt;...<br/>
1955                <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
1956                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
1957                   </span>
1958                   <span class="occurs">[1]</span>"</span>
1959                <br/>
1960                <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
1961                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
1962                   </span>
1963                   <span class="occurs">[1]</span>"</span>
1964                <br/>
1965                <span style="margin-left: 0.5em"> distance="<span class="type">
1966                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1967                   <span class="occurs">[0..1]</span>"</span>
1968                <br/>
1969                <span style="margin-left: 0.5em"> type="<span class="type">
1970                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1971                   <span class="occurs">[1]</span>"</span>&gt; <br/>
1972                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1973                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1974                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
1975                </div>&lt;/...&gt;</div>
1976          </div>
1977          <script type="text/javascript">
1978 <!--
1979           setState('h192331856_xibox', true);
1980 // -->
1981 </script>
1982       </div>
1983       <div class="sample box">
1984          <div>
1985             <input type="button" id="h192331856_diagram_button" class="control"
1986                    onclick="switchState('h192331856_diagram'); return false;"
1987                    style="display: none"/>
1988             <span class="caption">Diagram</span>
1989          </div>
1990          <div id="h192331856_diagram" class="contents">
1991             <img usemap="#h1919634775" src="schemaDiagrams/h1919634775.png"/>
1992             <!--
1993             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1919634775.map--><map name="h1919634775">
1994                <area shape="rect" alt="h-993584945" coords="257,0,383,40"
1995                      href="phyloxml.xsd.html#h-993584945"/>
1996
1997                <area shape="rect" alt="h577349652" coords="171,50,301,76"
1998                      href="phyloxml.xsd.html#h577349652"/>
1999
2000                <area shape="rect" alt="h577349652" coords="171,86,301,112"
2001                      href="phyloxml.xsd.html#h577349652"/>
2002
2003             </map>
2004          </div>
2005          <script type="text/javascript">
2006 <!--
2007           setState('h192331856_diagram', true);
2008 // -->
2009 </script>
2010       </div>
2011       <div class="schemaComponent box">
2012          <div>
2013             <input type="button" id="h192331856_scbox_button" class="control"
2014                    onclick="switchState('h192331856_scbox'); return false;"
2015                    style="display: none"/>
2016             <span class="caption">Schema Component Representation</span>
2017          </div>
2018          <div id="h192331856_scbox" class="contents">
2019             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2020                <span class="scTag">name</span>="<span class="scContent">CladeRelation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2021                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2022                         <span class="type">
2023                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2024                         </span>
2025                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2026                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2027                   <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
2028                      <span class="type">
2029                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2030                      </span>
2031                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2032                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2033                   <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
2034                      <span class="type">
2035                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2036                      </span>
2037                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2038                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2039                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
2040                      <span class="type">
2041                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2042                   </span>"/&gt;</div>
2043                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2044                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2045                      <span class="type">
2046                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2047                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2048          </div>
2049          <script type="text/javascript">
2050 <!--
2051           setState('h192331856_scbox', false);
2052 // -->
2053 </script>
2054       </div>
2055       <div style="text-align: right; clear: both;">
2056          <a href="#top">top</a>
2057       </div>
2058       <hr/>
2059       <h3>Complex Type: <a name="h-993584945" class="name">Confidence</a>
2060       </h3>
2061       <table class="hierarchy">
2062          <tr>
2063             <th>Super-types:</th>
2064             <td>
2065                <span class="type">
2066                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt; <strong>Confidence</strong> (by extension)</td>
2067          </tr>
2068          <tr>
2069             <th>Sub-types:</th>
2070             <td>None</td>
2071          </tr>
2072       </table>
2073       <table class="properties">
2074          <tr>
2075             <th>Name</th>
2076             <td>Confidence</td>
2077          </tr>
2078          <tr>
2079             <th>Used by (from the same schema document)</th>
2080             <td>Complex Type <b>
2081                   <a href="#h535307528">Phylogeny</a>
2082                </b>, Complex Type <b>
2083                   <a href="#h-1124608460">Clade</a>
2084                </b>, Complex Type <b>
2085                   <a href="#h-1122459339">Event</a>
2086                </b>, Complex Type <b>
2087                   <a href="#h917087604">Annotation</a>
2088                </b>, Complex Type <b>
2089                   <a href="#h-802965662">SequenceRelation</a>
2090                </b>, Complex Type <b>
2091                   <a href="#h192331856">CladeRelation</a>
2092                </b>
2093             </td>
2094          </tr>
2095          <tr>
2096             <th>
2097                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2098             </th>
2099             <td>no</td>
2100          </tr>
2101       </table>
2102       <div class="sample box">
2103          <div>
2104             <input type="button" id="h-993584945_xibox_button" class="control"
2105                    onclick="switchState('h-993584945_xibox'); return false;"
2106                    style="display: none"/>
2107             <span class="caption">XML Instance Representation</span>
2108          </div>
2109          <div id="h-993584945_xibox" class="contents">
2110             <div style="margin-left: 0em">&lt;...<br/>
2111                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2112                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2113                   <span class="occurs">[1]</span>"</span>&gt; <br/>
2114                <span style="margin-left: 1.5em">
2115                   <span class="type">
2116                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2117                </span>
2118                <br/>&lt;/...&gt;</div>
2119          </div>
2120          <script type="text/javascript">
2121 <!--
2122           setState('h-993584945_xibox', true);
2123 // -->
2124 </script>
2125       </div>
2126       <div class="sample box">
2127          <div>
2128             <input type="button" id="h-993584945_diagram_button" class="control"
2129                    onclick="switchState('h-993584945_diagram'); return false;"
2130                    style="display: none"/>
2131             <span class="caption">Diagram</span>
2132          </div>
2133          <div id="h-993584945_diagram" class="contents">
2134             <img usemap="#h1603897912" src="schemaDiagrams/h1603897912.png"/>
2135             <!--
2136             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1603897912.map--><map name="h1603897912">
2137 </map>
2138          </div>
2139          <script type="text/javascript">
2140 <!--
2141           setState('h-993584945_diagram', true);
2142 // -->
2143 </script>
2144       </div>
2145       <div class="schemaComponent box">
2146          <div>
2147             <input type="button" id="h-993584945_scbox_button" class="control"
2148                    onclick="switchState('h-993584945_scbox'); return false;"
2149                    style="display: none"/>
2150             <span class="caption">Schema Component Representation</span>
2151          </div>
2152          <div id="h-993584945_scbox" class="contents">
2153             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2154                <span class="scTag">name</span>="<span class="scContent">Confidence</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
2155                      <span class="scTag">base</span>="<span class="scContent">
2156                         <span class="type">
2157                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2158                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2159                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2160                            <span class="type">
2161                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2162                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2163          </div>
2164          <script type="text/javascript">
2165 <!--
2166           setState('h-993584945_scbox', false);
2167 // -->
2168 </script>
2169       </div>
2170       <div style="text-align: right; clear: both;">
2171          <a href="#top">top</a>
2172       </div>
2173       <hr/>
2174       <h3>Complex Type: <a name="h-494260170" class="name">Custom</a>
2175       </h3>
2176       <table class="hierarchy">
2177          <tr>
2178             <th>Super-types:</th>
2179             <td>None</td>
2180          </tr>
2181          <tr>
2182             <th>Sub-types:</th>
2183             <td>None</td>
2184          </tr>
2185       </table>
2186       <table class="properties">
2187          <tr>
2188             <th>Name</th>
2189             <td>Custom</td>
2190          </tr>
2191          <tr>
2192             <th>Used by (from the same schema document)</th>
2193             <td>Complex Type <b>
2194                   <a href="#h535307528">Phylogeny</a>
2195                </b>, Complex Type <b>
2196                   <a href="#h-1124608460">Clade</a>
2197                </b>
2198             </td>
2199          </tr>
2200          <tr>
2201             <th>
2202                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2203             </th>
2204             <td>no</td>
2205          </tr>
2206       </table>
2207       <div class="sample box">
2208          <div>
2209             <input type="button" id="h-494260170_xibox_button" class="control"
2210                    onclick="switchState('h-494260170_xibox'); return false;"
2211                    style="display: none"/>
2212             <span class="caption">XML Instance Representation</span>
2213          </div>
2214          <div id="h-494260170_xibox" class="contents">
2215             <div style="margin-left: 0em">&lt;...<br/>
2216                <span style="margin-left: 0.5em"> unit="<span class="type">
2217                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2218                   <span class="occurs">[0..1]</span>"</span>
2219                <br/>
2220                <span style="margin-left: 0.5em"> custom_type="<span class="type">
2221                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CustomType&#34; type definition." href="#h890448016">CustomType</a>
2222                   </span>
2223                   <span class="occurs">[1]</span>"</span>
2224                <br/>
2225                <span style="margin-left: 0.5em"> custom_property="<span class="type">
2226                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CustomProperty&#34; type definition." href="#h-1670259669">CustomProperty</a>
2227                   </span>
2228                   <span class="occurs">[1]</span>"</span>
2229                <br/>
2230                <span style="margin-left: 0.5em"> id_ref="<span class="type">
2231                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2232                   </span>
2233                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2234                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
2235                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[1]</span>
2236                </div>
2237                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value&gt; <span class="type">
2238                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value&gt; <span class="occurs">[1]</span>
2239                </div>&lt;/...&gt;</div>
2240          </div>
2241          <script type="text/javascript">
2242 <!--
2243           setState('h-494260170_xibox', true);
2244 // -->
2245 </script>
2246       </div>
2247       <div class="sample box">
2248          <div>
2249             <input type="button" id="h-494260170_diagram_button" class="control"
2250                    onclick="switchState('h-494260170_diagram'); return false;"
2251                    style="display: none"/>
2252             <span class="caption">Diagram</span>
2253          </div>
2254          <div id="h-494260170_diagram" class="contents">
2255             <img usemap="#h-1387730639" src="schemaDiagrams/h-1387730639.png"/>
2256             <!--
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2266
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2268          </div>
2269          <script type="text/javascript">
2270 <!--
2271           setState('h-494260170_diagram', true);
2272 // -->
2273 </script>
2274       </div>
2275       <div class="schemaComponent box">
2276          <div>
2277             <input type="button" id="h-494260170_scbox_button" class="control"
2278                    onclick="switchState('h-494260170_scbox'); return false;"
2279                    style="display: none"/>
2280             <span class="caption">Schema Component Representation</span>
2281          </div>
2282          <div id="h-494260170_scbox" class="contents">
2283             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2284                <span class="scTag">name</span>="<span class="scContent">Custom</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2285                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2286                         <span class="type">
2287                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2288                      </span>"/&gt;</div>
2289                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2290                      <span class="scTag">name</span>="<span class="scContent">value</span>" <span class="scTag">type</span>="<span class="scContent">
2291                         <span class="type">
2292                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2293                      </span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2294                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2295                   <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
2296                      <span class="type">
2297                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2298                   </span>"/&gt;</div>
2299                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2300                   <span class="scTag">name</span>="<span class="scContent">custom_type</span>" <span class="scTag">type</span>="<span class="scContent">
2301                      <span class="type">
2302                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CustomType&#34; type definition." href="#h890448016">CustomType</a>
2303                      </span>
2304                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2305                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2306                   <span class="scTag">name</span>="<span class="scContent">custom_property</span>" <span class="scTag">type</span>="<span class="scContent">
2307                      <span class="type">
2308                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CustomProperty&#34; type definition." href="#h-1670259669">CustomProperty</a>
2309                      </span>
2310                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2311                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2312                   <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
2313                      <span class="type">
2314                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2315                      </span>
2316                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2317          </div>
2318          <script type="text/javascript">
2319 <!--
2320           setState('h-494260170_scbox', false);
2321 // -->
2322 </script>
2323       </div>
2324       <div style="text-align: right; clear: both;">
2325          <a href="#top">top</a>
2326       </div>
2327       <hr/>
2328       <h3>Complex Type: <a name="h259010940" class="name">DomainArchitecture</a>
2329       </h3>
2330       <table class="hierarchy">
2331          <tr>
2332             <th>Super-types:</th>
2333             <td>None</td>
2334          </tr>
2335          <tr>
2336             <th>Sub-types:</th>
2337             <td>None</td>
2338          </tr>
2339       </table>
2340       <table class="properties">
2341          <tr>
2342             <th>Name</th>
2343             <td>DomainArchitecture</td>
2344          </tr>
2345          <tr>
2346             <th>Used by (from the same schema document)</th>
2347             <td>Complex Type <b>
2348                   <a href="#h-1794244794">Sequence</a>
2349                </b>
2350             </td>
2351          </tr>
2352          <tr>
2353             <th>
2354                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2355             </th>
2356             <td>no</td>
2357          </tr>
2358       </table>
2359       <div class="sample box">
2360          <div>
2361             <input type="button" id="h259010940_xibox_button" class="control"
2362                    onclick="switchState('h259010940_xibox'); return false;"
2363                    style="display: none"/>
2364             <span class="caption">XML Instance Representation</span>
2365          </div>
2366          <div id="h259010940_xibox" class="contents">
2367             <div style="margin-left: 0em">&lt;...<br/>
2368                <span style="margin-left: 0.5em"> length="<span class="type">
2369                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2370                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2371                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain&gt; <span class="type">
2372                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ProteinDomain&#34; type definition." href="#h-1389097534">ProteinDomain</a>
2373                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain&gt; <span class="occurs">[1..*]</span>
2374                </div>&lt;/...&gt;</div>
2375          </div>
2376          <script type="text/javascript">
2377 <!--
2378           setState('h259010940_xibox', true);
2379 // -->
2380 </script>
2381       </div>
2382       <div class="sample box">
2383          <div>
2384             <input type="button" id="h259010940_diagram_button" class="control"
2385                    onclick="switchState('h259010940_diagram'); return false;"
2386                    style="display: none"/>
2387             <span class="caption">Diagram</span>
2388          </div>
2389          <div id="h259010940_diagram" class="contents">
2390             <img usemap="#h-93417557" src="schemaDiagrams/h-93417557.png"/>
2391             <!--
2392             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-93417557.map--><map name="h-93417557">
2393                <area shape="rect" alt="h-1389097534" coords="292,0,390,40"
2394                      href="phyloxml.xsd.html#h-1389097534"/>
2395
2396             </map>
2397          </div>
2398          <script type="text/javascript">
2399 <!--
2400           setState('h259010940_diagram', true);
2401 // -->
2402 </script>
2403       </div>
2404       <div class="schemaComponent box">
2405          <div>
2406             <input type="button" id="h259010940_scbox_button" class="control"
2407                    onclick="switchState('h259010940_scbox'); return false;"
2408                    style="display: none"/>
2409             <span class="caption">Schema Component Representation</span>
2410          </div>
2411          <div id="h259010940_scbox" class="contents">
2412             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2413                <span class="scTag">name</span>="<span class="scContent">DomainArchitecture</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2414                      <span class="scTag">name</span>="<span class="scContent">domain</span>" <span class="scTag">type</span>="<span class="scContent">
2415                         <span class="type">
2416                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ProteinDomain&#34; type definition." href="#h-1389097534">ProteinDomain</a>
2417                         </span>
2418                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">1</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2419                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2420                   <span class="scTag">name</span>="<span class="scContent">length</span>" <span class="scTag">type</span>="<span class="scContent">
2421                      <span class="type">
2422                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2423                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2424          </div>
2425          <script type="text/javascript">
2426 <!--
2427           setState('h259010940_scbox', false);
2428 // -->
2429 </script>
2430       </div>
2431       <div style="text-align: right; clear: both;">
2432          <a href="#top">top</a>
2433       </div>
2434       <hr/>
2435       <h3>Complex Type: <a name="h-1122459339" class="name">Event</a>
2436       </h3>
2437       <table class="hierarchy">
2438          <tr>
2439             <th>Super-types:</th>
2440             <td>None</td>
2441          </tr>
2442          <tr>
2443             <th>Sub-types:</th>
2444             <td>None</td>
2445          </tr>
2446       </table>
2447       <table class="properties">
2448          <tr>
2449             <th>Name</th>
2450             <td>Event</td>
2451          </tr>
2452          <tr>
2453             <th>Used by (from the same schema document)</th>
2454             <td>Complex Type <b>
2455                   <a href="#h-1124608460">Clade</a>
2456                </b>
2457             </td>
2458          </tr>
2459          <tr>
2460             <th>
2461                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2462             </th>
2463             <td>no</td>
2464          </tr>
2465       </table>
2466       <div class="sample box">
2467          <div>
2468             <input type="button" id="h-1122459339_xibox_button" class="control"
2469                    onclick="switchState('h-1122459339_xibox'); return false;"
2470                    style="display: none"/>
2471             <span class="caption">XML Instance Representation</span>
2472          </div>
2473          <div id="h-1122459339_xibox" class="contents">
2474             <div style="margin-left: 0em">&lt;...&gt; <br/>
2475                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type&gt; <span class="type">
2476                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;EventType&#34; type definition." href="#h1358103055">EventType</a>
2477                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type&gt; <span class="occurs">[0..1]</span>
2478                </div>
2479                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications&gt; <span class="type">
2480                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications&gt; <span class="occurs">[0..1]</span>
2481                </div>
2482                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations&gt; <span class="type">
2483                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations&gt; <span class="occurs">[0..1]</span>
2484                </div>
2485                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses&gt; <span class="type">
2486                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses&gt; <span class="occurs">[0..1]</span>
2487                </div>
2488                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
2489                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2490                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
2491                </div>&lt;/...&gt;</div>
2492          </div>
2493          <script type="text/javascript">
2494 <!--
2495           setState('h-1122459339_xibox', true);
2496 // -->
2497 </script>
2498       </div>
2499       <div class="sample box">
2500          <div>
2501             <input type="button" id="h-1122459339_diagram_button" class="control"
2502                    onclick="switchState('h-1122459339_diagram'); return false;"
2503                    style="display: none"/>
2504             <span class="caption">Diagram</span>
2505          </div>
2506          <div id="h-1122459339_diagram" class="contents">
2507             <img usemap="#h408247698" src="schemaDiagrams/h408247698.png"/>
2508             <!--
2509             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h408247698.map--><map name="h408247698">
2510                <area shape="rect" alt="h1358103055" coords="201,0,285,40"
2511                      href="phyloxml.xsd.html#h1358103055"/>
2512
2513                <area shape="rect" alt="h-993584945" coords="201,200,327,240"
2514                      href="phyloxml.xsd.html#h-993584945"/>
2515
2516             </map>
2517          </div>
2518          <script type="text/javascript">
2519 <!--
2520           setState('h-1122459339_diagram', true);
2521 // -->
2522 </script>
2523       </div>
2524       <div class="schemaComponent box">
2525          <div>
2526             <input type="button" id="h-1122459339_scbox_button" class="control"
2527                    onclick="switchState('h-1122459339_scbox'); return false;"
2528                    style="display: none"/>
2529             <span class="caption">Schema Component Representation</span>
2530          </div>
2531          <div id="h-1122459339_scbox" class="contents">
2532             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2533                <span class="scTag">name</span>="<span class="scContent">Event</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2534                      <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2535                         <span class="type">
2536                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;EventType&#34; type definition." href="#h1358103055">EventType</a>
2537                         </span>
2538                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2539                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2540                      <span class="scTag">name</span>="<span class="scContent">duplications</span>" <span class="scTag">type</span>="<span class="scContent">
2541                         <span class="type">
2542                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2543                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2544                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2545                      <span class="scTag">name</span>="<span class="scContent">speciations</span>" <span class="scTag">type</span>="<span class="scContent">
2546                         <span class="type">
2547                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2548                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2549                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2550                      <span class="scTag">name</span>="<span class="scContent">losses</span>" <span class="scTag">type</span>="<span class="scContent">
2551                         <span class="type">
2552                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2553                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2554                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2555                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2556                         <span class="type">
2557                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2558                         </span>
2559                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2560          </div>
2561          <script type="text/javascript">
2562 <!--
2563           setState('h-1122459339_scbox', false);
2564 // -->
2565 </script>
2566       </div>
2567       <div style="text-align: right; clear: both;">
2568          <a href="#top">top</a>
2569       </div>
2570       <hr/>
2571       <h3>Complex Type: <a name="h-853091232" class="name">Id</a>
2572       </h3>
2573       <table class="hierarchy">
2574          <tr>
2575             <th>Super-types:</th>
2576             <td>
2577                <span class="type">
2578                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Id</strong> (by extension)</td>
2579          </tr>
2580          <tr>
2581             <th>Sub-types:</th>
2582             <td>None</td>
2583          </tr>
2584       </table>
2585       <table class="properties">
2586          <tr>
2587             <th>Name</th>
2588             <td>Id</td>
2589          </tr>
2590          <tr>
2591             <th>Used by (from the same schema document)</th>
2592             <td>Complex Type <b>
2593                   <a href="#h535307528">Phylogeny</a>
2594                </b>, Complex Type <b>
2595                   <a href="#h-1124608460">Clade</a>
2596                </b>, Complex Type <b>
2597                   <a href="#h888650454">Taxonomy</a>
2598                </b>, Complex Type <b>
2599                   <a href="#h-1794244794">Sequence</a>
2600                </b>, Complex Type <b>
2601                   <a href="#h917087604">Annotation</a>
2602                </b>
2603             </td>
2604          </tr>
2605          <tr>
2606             <th>
2607                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2608             </th>
2609             <td>no</td>
2610          </tr>
2611       </table>
2612       <div class="sample box">
2613          <div>
2614             <input type="button" id="h-853091232_xibox_button" class="control"
2615                    onclick="switchState('h-853091232_xibox'); return false;"
2616                    style="display: none"/>
2617             <span class="caption">XML Instance Representation</span>
2618          </div>
2619          <div id="h-853091232_xibox" class="contents">
2620             <div style="margin-left: 0em">&lt;...<br/>
2621                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2622                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2623                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2624                <span style="margin-left: 1.5em">
2625                   <span class="type">
2626                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2627                </span>
2628                <br/>&lt;/...&gt;</div>
2629          </div>
2630          <script type="text/javascript">
2631 <!--
2632           setState('h-853091232_xibox', true);
2633 // -->
2634 </script>
2635       </div>
2636       <div class="sample box">
2637          <div>
2638             <input type="button" id="h-853091232_diagram_button" class="control"
2639                    onclick="switchState('h-853091232_diagram'); return false;"
2640                    style="display: none"/>
2641             <span class="caption">Diagram</span>
2642          </div>
2643          <div id="h-853091232_diagram" class="contents">
2644             <img usemap="#h-1484760249" src="schemaDiagrams/h-1484760249.png"/>
2645             <!--
2646             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1484760249.map--><map name="h-1484760249">
2647 </map>
2648          </div>
2649          <script type="text/javascript">
2650 <!--
2651           setState('h-853091232_diagram', true);
2652 // -->
2653 </script>
2654       </div>
2655       <div class="schemaComponent box">
2656          <div>
2657             <input type="button" id="h-853091232_scbox_button" class="control"
2658                    onclick="switchState('h-853091232_scbox'); return false;"
2659                    style="display: none"/>
2660             <span class="caption">Schema Component Representation</span>
2661          </div>
2662          <div id="h-853091232_scbox" class="contents">
2663             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2664                <span class="scTag">name</span>="<span class="scContent">Id</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
2665                      <span class="scTag">base</span>="<span class="scContent">
2666                         <span class="type">
2667                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2668                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2669                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2670                            <span class="type">
2671                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2672                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2673          </div>
2674          <script type="text/javascript">
2675 <!--
2676           setState('h-853091232_scbox', false);
2677 // -->
2678 </script>
2679       </div>
2680       <div style="text-align: right; clear: both;">
2681          <a href="#top">top</a>
2682       </div>
2683       <hr/>
2684       <h3>Complex Type: <a name="h535307528" class="name">Phylogeny</a>
2685       </h3>
2686       <table class="hierarchy">
2687          <tr>
2688             <th>Super-types:</th>
2689             <td>None</td>
2690          </tr>
2691          <tr>
2692             <th>Sub-types:</th>
2693             <td>None</td>
2694          </tr>
2695       </table>
2696       <table class="properties">
2697          <tr>
2698             <th>Name</th>
2699             <td>Phylogeny</td>
2700          </tr>
2701          <tr>
2702             <th>Used by (from the same schema document)</th>
2703             <td>Complex Type <b>
2704                   <a href="#h155831896">Phyloxml</a>
2705                </b>
2706             </td>
2707          </tr>
2708          <tr>
2709             <th>
2710                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2711             </th>
2712             <td>no</td>
2713          </tr>
2714       </table>
2715       <div class="sample box">
2716          <div>
2717             <input type="button" id="h535307528_xibox_button" class="control"
2718                    onclick="switchState('h535307528_xibox'); return false;"
2719                    style="display: none"/>
2720             <span class="caption">XML Instance Representation</span>
2721          </div>
2722          <div id="h535307528_xibox" class="contents">
2723             <div style="margin-left: 0em">&lt;...<br/>
2724                <span style="margin-left: 0.5em"> rooted="<span class="type">
2725                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2726                   <span class="occurs">[1]</span>"</span>
2727                <br/>
2728                <span style="margin-left: 0.5em"> rerootable="<span class="type">
2729                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2730                   <span class="occurs">[0..1]</span>"</span>
2731                <br/>
2732                <span style="margin-left: 0.5em"> distance_unit="<span class="type">
2733                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2734                   <span class="occurs">[0..1]</span>"</span>
2735                <br/>
2736                <span style="margin-left: 0.5em"> type="<span class="type">
2737                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2738                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2739                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
2740                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
2741                </div>
2742                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
2743                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
2744                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
2745                </div>
2746                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description&gt; <span class="type">
2747                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description&gt; <span class="occurs">[0..1]</span>
2748                </div>
2749                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="type">
2750                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="occurs">[0..1]</span>
2751                </div>
2752                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
2753                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2754                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..*]</span>
2755                </div>
2756                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="type">
2757                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
2758                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="occurs">[0..1]</span>
2759                </div>
2760                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation&gt; <span class="type">
2761                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CladeRelation&#34; type definition." href="#h192331856">CladeRelation</a>
2762                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation&gt; <span class="occurs">[0..*]</span>
2763                </div>
2764                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation&gt; <span class="type">
2765                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelation&#34; type definition." href="#h-802965662">SequenceRelation</a>
2766                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation&gt; <span class="occurs">[0..*]</span>
2767                </div>
2768                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom&gt; <span class="type">
2769                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Custom&#34; type definition." href="#h-494260170">Custom</a>
2770                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom&gt; <span class="occurs">[0..*]</span>
2771                </div>
2772                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
2773                </div>&lt;/...&gt;</div>
2774          </div>
2775          <script type="text/javascript">
2776 <!--
2777           setState('h535307528_xibox', true);
2778 // -->
2779 </script>
2780       </div>
2781       <div class="sample box">
2782          <div>
2783             <input type="button" id="h535307528_diagram_button" class="control"
2784                    onclick="switchState('h535307528_diagram'); return false;"
2785                    style="display: none"/>
2786             <span class="caption">Diagram</span>
2787          </div>
2788          <div id="h535307528_diagram" class="contents">
2789             <img usemap="#h731810719" src="schemaDiagrams/h731810719.png"/>
2790             <!--
2791             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h731810719.map--><map name="h731810719">
2792                <area shape="rect" alt="h-853091232" coords="229,50,305,90"
2793                      href="phyloxml.xsd.html#h-853091232"/>
2794
2795                <area shape="rect" alt="h-993584945" coords="229,200,355,240"
2796                      href="phyloxml.xsd.html#h-993584945"/>
2797
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2799                      href="phyloxml.xsd.html#h-1124608460"/>
2800
2801                <area shape="rect" alt="h192331856" coords="229,300,383,340"
2802                      href="phyloxml.xsd.html#h192331856"/>
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2808                      href="phyloxml.xsd.html#h-494260170"/>
2809
2810             </map>
2811          </div>
2812          <script type="text/javascript">
2813 <!--
2814           setState('h535307528_diagram', true);
2815 // -->
2816 </script>
2817       </div>
2818       <div class="schemaComponent box">
2819          <div>
2820             <input type="button" id="h535307528_scbox_button" class="control"
2821                    onclick="switchState('h535307528_scbox'); return false;"
2822                    style="display: none"/>
2823             <span class="caption">Schema Component Representation</span>
2824          </div>
2825          <div id="h535307528_scbox" class="contents">
2826             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2827                <span class="scTag">name</span>="<span class="scContent">Phylogeny</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2828                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2829                         <span class="type">
2830                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2831                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2832                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2833                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
2834                         <span class="type">
2835                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
2836                         </span>
2837                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2838                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2839                      <span class="scTag">name</span>="<span class="scContent">description</span>" <span class="scTag">type</span>="<span class="scContent">
2840                         <span class="type">
2841                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2842                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2843                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2844                      <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
2845                         <span class="type">
2846                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span>
2847                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2848                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2849                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2850                         <span class="type">
2851                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2852                         </span>
2853                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2854                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2855                      <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
2856                         <span class="type">
2857                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
2858                         </span>
2859                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2860                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2861                      <span class="scTag">name</span>="<span class="scContent">clade_relation</span>" <span class="scTag">type</span>="<span class="scContent">
2862                         <span class="type">
2863                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CladeRelation&#34; type definition." href="#h192331856">CladeRelation</a>
2864                         </span>
2865                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2866                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2867                      <span class="scTag">name</span>="<span class="scContent">sequence_relation</span>" <span class="scTag">type</span>="<span class="scContent">
2868                         <span class="type">
2869                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelation&#34; type definition." href="#h-802965662">SequenceRelation</a>
2870                         </span>
2871                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2872                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2873                      <span class="scTag">name</span>="<span class="scContent">custom</span>" <span class="scTag">type</span>="<span class="scContent">
2874                         <span class="type">
2875                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Custom&#34; type definition." href="#h-494260170">Custom</a>
2876                         </span>
2877                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2878                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
2879                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2880                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2881                   <span class="scTag">name</span>="<span class="scContent">rooted</span>" <span class="scTag">type</span>="<span class="scContent">
2882                      <span class="type">
2883                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2884                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2885                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2886                   <span class="scTag">name</span>="<span class="scContent">rerootable</span>" <span class="scTag">type</span>="<span class="scContent">
2887                      <span class="type">
2888                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2889                   </span>"/&gt;</div>
2890                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2891                   <span class="scTag">name</span>="<span class="scContent">distance_unit</span>" <span class="scTag">type</span>="<span class="scContent">
2892                      <span class="type">
2893                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2894                   </span>"/&gt;</div>
2895                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2896                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2897                      <span class="type">
2898                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2899                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2900          </div>
2901          <script type="text/javascript">
2902 <!--
2903           setState('h535307528_scbox', false);
2904 // -->
2905 </script>
2906       </div>
2907       <div style="text-align: right; clear: both;">
2908          <a href="#top">top</a>
2909       </div>
2910       <hr/>
2911       <h3>Complex Type: <a name="h155831896" class="name">Phyloxml</a>
2912       </h3>
2913       <table class="hierarchy">
2914          <tr>
2915             <th>Super-types:</th>
2916             <td>None</td>
2917          </tr>
2918          <tr>
2919             <th>Sub-types:</th>
2920             <td>None</td>
2921          </tr>
2922       </table>
2923       <table class="properties">
2924          <tr>
2925             <th>Name</th>
2926             <td>Phyloxml</td>
2927          </tr>
2928          <tr>
2929             <th>Used by (from the same schema document)</th>
2930             <td>Element <b>
2931                   <a href="#h270234806">phyloxml</a>
2932                </b>
2933             </td>
2934          </tr>
2935          <tr>
2936             <th>
2937                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2938             </th>
2939             <td>no</td>
2940          </tr>
2941       </table>
2942       <div class="sample box">
2943          <div>
2944             <input type="button" id="h155831896_xibox_button" class="control"
2945                    onclick="switchState('h155831896_xibox'); return false;"
2946                    style="display: none"/>
2947             <span class="caption">XML Instance Representation</span>
2948          </div>
2949          <div id="h155831896_xibox" class="contents">
2950             <div style="margin-left: 0em">&lt;...&gt; <br/>
2951                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
2952                   <span class="occurs">[1..*]</span>
2953                </span>
2954                <br/>
2955                <div style="margin-left: 3em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="type">
2956                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
2957                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="occurs">[0..*]</span>
2958                </div>
2959                <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
2960                </div>
2961                <span class="group" style="margin-left: 1.5em">End Sequence</span>
2962                <br/>&lt;/...&gt;</div>
2963          </div>
2964          <script type="text/javascript">
2965 <!--
2966           setState('h155831896_xibox', true);
2967 // -->
2968 </script>
2969       </div>
2970       <div class="sample box">
2971          <div>
2972             <input type="button" id="h155831896_diagram_button" class="control"
2973                    onclick="switchState('h155831896_diagram'); return false;"
2974                    style="display: none"/>
2975             <span class="caption">Diagram</span>
2976          </div>
2977          <div id="h155831896_diagram" class="contents">
2978             <img usemap="#h-354757553" src="schemaDiagrams/h-354757553.png"/>
2979             <!--
2980             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-354757553.map--><map name="h-354757553">
2981                <area shape="rect" alt="h535307528" coords="222,0,341,40"
2982                      href="phyloxml.xsd.html#h535307528"/>
2983
2984             </map>
2985          </div>
2986          <script type="text/javascript">
2987 <!--
2988           setState('h155831896_diagram', true);
2989 // -->
2990 </script>
2991       </div>
2992       <div class="schemaComponent box">
2993          <div>
2994             <input type="button" id="h155831896_scbox_button" class="control"
2995                    onclick="switchState('h155831896_scbox'); return false;"
2996                    style="display: none"/>
2997             <span class="caption">Schema Component Representation</span>
2998          </div>
2999          <div id="h155831896_scbox" class="contents">
3000             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3001                <span class="scTag">name</span>="<span class="scContent">Phyloxml</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>
3002                   <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3003                      <span class="scTag">name</span>="<span class="scContent">phylogeny</span>" <span class="scTag">type</span>="<span class="scContent">
3004                         <span class="type">
3005                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
3006                         </span>
3007                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3008                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
3009                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3010          </div>
3011          <script type="text/javascript">
3012 <!--
3013           setState('h155831896_scbox', false);
3014 // -->
3015 </script>
3016       </div>
3017       <div style="text-align: right; clear: both;">
3018          <a href="#top">top</a>
3019       </div>
3020       <hr/>
3021       <h3>Complex Type: <a name="h-1389097534" class="name">ProteinDomain</a>
3022       </h3>
3023       <table class="hierarchy">
3024          <tr>
3025             <th>Super-types:</th>
3026             <td>
3027                <span class="type">
3028                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>ProteinDomain</strong> (by extension)</td>
3029          </tr>
3030          <tr>
3031             <th>Sub-types:</th>
3032             <td>None</td>
3033          </tr>
3034       </table>
3035       <table class="properties">
3036          <tr>
3037             <th>Name</th>
3038             <td>ProteinDomain</td>
3039          </tr>
3040          <tr>
3041             <th>Used by (from the same schema document)</th>
3042             <td>Complex Type <b>
3043                   <a href="#h259010940">DomainArchitecture</a>
3044                </b>
3045             </td>
3046          </tr>
3047          <tr>
3048             <th>
3049                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3050             </th>
3051             <td>no</td>
3052          </tr>
3053       </table>
3054       <div class="sample box">
3055          <div>
3056             <input type="button" id="h-1389097534_xibox_button" class="control"
3057                    onclick="switchState('h-1389097534_xibox'); return false;"
3058                    style="display: none"/>
3059             <span class="caption">XML Instance Representation</span>
3060          </div>
3061          <div id="h-1389097534_xibox" class="contents">
3062             <div style="margin-left: 0em">&lt;...<br/>
3063                <span style="margin-left: 0.5em" class="newFields"> from="<span class="type">
3064                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3065                   <span class="occurs">[1]</span>"</span>
3066                <br/>
3067                <span style="margin-left: 0.5em" class="newFields"> to="<span class="type">
3068                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3069                   <span class="occurs">[1]</span>"</span>
3070                <br/>
3071                <span style="margin-left: 0.5em" class="newFields"> confidence="<span class="type">
3072                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3073                   <span class="occurs">[0..1]</span>"</span>
3074                <br/>
3075                <span style="margin-left: 0.5em" class="newFields"> id="<span class="type">
3076                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3077                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3078                <span style="margin-left: 1.5em">
3079                   <span class="type">
3080                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3081                </span>
3082                <br/>&lt;/...&gt;</div>
3083          </div>
3084          <script type="text/javascript">
3085 <!--
3086           setState('h-1389097534_xibox', true);
3087 // -->
3088 </script>
3089       </div>
3090       <div class="sample box">
3091          <div>
3092             <input type="button" id="h-1389097534_diagram_button" class="control"
3093                    onclick="switchState('h-1389097534_diagram'); return false;"
3094                    style="display: none"/>
3095             <span class="caption">Diagram</span>
3096          </div>
3097          <div id="h-1389097534_diagram" class="contents">
3098             <img usemap="#h1501379365" src="schemaDiagrams/h1501379365.png"/>
3099             <!--
3100             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1501379365.map--><map name="h1501379365">
3101 </map>
3102          </div>
3103          <script type="text/javascript">
3104 <!--
3105           setState('h-1389097534_diagram', true);
3106 // -->
3107 </script>
3108       </div>
3109       <div class="schemaComponent box">
3110          <div>
3111             <input type="button" id="h-1389097534_scbox_button" class="control"
3112                    onclick="switchState('h-1389097534_scbox'); return false;"
3113                    style="display: none"/>
3114             <span class="caption">Schema Component Representation</span>
3115          </div>
3116          <div id="h-1389097534_scbox" class="contents">
3117             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3118                <span class="scTag">name</span>="<span class="scContent">ProteinDomain</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
3119                      <span class="scTag">base</span>="<span class="scContent">
3120                         <span class="type">
3121                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3122                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3123                         <span class="scTag">name</span>="<span class="scContent">from</span>" <span class="scTag">type</span>="<span class="scContent">
3124                            <span class="type">
3125                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3126                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3127                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3128                         <span class="scTag">name</span>="<span class="scContent">to</span>" <span class="scTag">type</span>="<span class="scContent">
3129                            <span class="type">
3130                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3131                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3132                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3133                         <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3134                            <span class="type">
3135                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3136                         </span>"/&gt;</div>
3137                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3138                         <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3139                            <span class="type">
3140                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3141                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3142          </div>
3143          <script type="text/javascript">
3144 <!--
3145           setState('h-1389097534_scbox', false);
3146 // -->
3147 </script>
3148       </div>
3149       <div style="text-align: right; clear: both;">
3150          <a href="#top">top</a>
3151       </div>
3152       <hr/>
3153       <h3>Complex Type: <a name="h-1794244794" class="name">Sequence</a>
3154       </h3>
3155       <table class="hierarchy">
3156          <tr>
3157             <th>Super-types:</th>
3158             <td>None</td>
3159          </tr>
3160          <tr>
3161             <th>Sub-types:</th>
3162             <td>None</td>
3163          </tr>
3164       </table>
3165       <table class="properties">
3166          <tr>
3167             <th>Name</th>
3168             <td>Sequence</td>
3169          </tr>
3170          <tr>
3171             <th>Used by (from the same schema document)</th>
3172             <td>Complex Type <b>
3173                   <a href="#h-1124608460">Clade</a>
3174                </b>
3175             </td>
3176          </tr>
3177          <tr>
3178             <th>
3179                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3180             </th>
3181             <td>no</td>
3182          </tr>
3183       </table>
3184       <div class="sample box">
3185          <div>
3186             <input type="button" id="h-1794244794_xibox_button" class="control"
3187                    onclick="switchState('h-1794244794_xibox'); return false;"
3188                    style="display: none"/>
3189             <span class="caption">XML Instance Representation</span>
3190          </div>
3191          <div id="h-1794244794_xibox" class="contents">
3192             <div style="margin-left: 0em">&lt;...<br/>
3193                <span style="margin-left: 0.5em"> id_source="<span class="type">
3194                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
3195                   </span>
3196                   <span class="occurs">[0..1]</span>"</span>
3197                <br/>
3198                <span style="margin-left: 0.5em"> type="<span class="type">
3199                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3200                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3201                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
3202                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3203                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
3204                </div>
3205                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession&gt; <span class="type">
3206                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession&gt; <span class="occurs">[0..1]</span>
3207                </div>
3208                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gene_name&gt; <span class="type">
3209                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gene_name&gt; <span class="occurs">[0..1]</span>
3210                </div>
3211                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location&gt; <span class="type">
3212                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location&gt; <span class="occurs">[0..1]</span>
3213                </div>
3214                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq&gt; <span class="type">
3215                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;MolSeq&#34; type definition." href="#h-213750342">MolSeq</a>
3216                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq&gt; <span class="occurs">[0..1]</span>
3217                </div>
3218                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
3219                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
3220                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
3221                </div>
3222                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation&gt; <span class="type">
3223                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Annotation&#34; type definition." href="#h917087604">Annotation</a>
3224                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation&gt; <span class="occurs">[0..*]</span>
3225                </div>
3226                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture&gt; <span class="type">
3227                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;DomainArchitecture&#34; type definition." href="#h259010940">DomainArchitecture</a>
3228                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture&gt; <span class="occurs">[0..1]</span>
3229                </div>
3230                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3231                </div>&lt;/...&gt;</div>
3232          </div>
3233          <script type="text/javascript">
3234 <!--
3235           setState('h-1794244794_xibox', true);
3236 // -->
3237 </script>
3238       </div>
3239       <div class="sample box">
3240          <div>
3241             <input type="button" id="h-1794244794_diagram_button" class="control"
3242                    onclick="switchState('h-1794244794_diagram'); return false;"
3243                    style="display: none"/>
3244             <span class="caption">Diagram</span>
3245          </div>
3246          <div id="h-1794244794_diagram" class="contents">
3247             <img usemap="#h1156064289" src="schemaDiagrams/h1156064289.png"/>
3248             <!--
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3250                <area shape="rect" alt="h-853091232" coords="222,0,298,40"
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3252
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3257                      href="phyloxml.xsd.html#h-676012345"/>
3258
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3267
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3269          </div>
3270          <script type="text/javascript">
3271 <!--
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3275       </div>
3276       <div class="schemaComponent box">
3277          <div>
3278             <input type="button" id="h-1794244794_scbox_button" class="control"
3279                    onclick="switchState('h-1794244794_scbox'); return false;"
3280                    style="display: none"/>
3281             <span class="caption">Schema Component Representation</span>
3282          </div>
3283          <div id="h-1794244794_scbox" class="contents">
3284             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3285                <span class="scTag">name</span>="<span class="scContent">Sequence</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3286                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3287                         <span class="type">
3288                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3289                         </span>
3290                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3291                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3292                      <span class="scTag">name</span>="<span class="scContent">accession</span>" <span class="scTag">type</span>="<span class="scContent">
3293                         <span class="type">
3294                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3295                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3296                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3297                      <span class="scTag">name</span>="<span class="scContent">gene_name</span>" <span class="scTag">type</span>="<span class="scContent">
3298                         <span class="type">
3299                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3300                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3301                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3302                      <span class="scTag">name</span>="<span class="scContent">location</span>" <span class="scTag">type</span>="<span class="scContent">
3303                         <span class="type">
3304                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3305                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3306                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3307                      <span class="scTag">name</span>="<span class="scContent">mol_seq</span>" <span class="scTag">type</span>="<span class="scContent">
3308                         <span class="type">
3309                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;MolSeq&#34; type definition." href="#h-213750342">MolSeq</a>
3310                         </span>
3311                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3312                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3313                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
3314                         <span class="type">
3315                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
3316                         </span>
3317                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3318                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3319                      <span class="scTag">name</span>="<span class="scContent">annotation</span>" <span class="scTag">type</span>="<span class="scContent">
3320                         <span class="type">
3321                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Annotation&#34; type definition." href="#h917087604">Annotation</a>
3322                         </span>
3323                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3324                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3325                      <span class="scTag">name</span>="<span class="scContent">domain_architecture</span>" <span class="scTag">type</span>="<span class="scContent">
3326                         <span class="type">
3327                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;DomainArchitecture&#34; type definition." href="#h259010940">DomainArchitecture</a>
3328                         </span>
3329                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3330                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
3331                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3332                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3333                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
3334                      <span class="type">
3335                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
3336                      </span>
3337                   </span>"/&gt;</div>
3338                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3339                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3340                      <span class="type">
3341                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3342                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3343          </div>
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3349       </div>
3350       <div style="text-align: right; clear: both;">
3351          <a href="#top">top</a>
3352       </div>
3353       <hr/>
3354       <h3>Complex Type: <a name="h-802965662" class="name">SequenceRelation</a>
3355       </h3>
3356       <table class="hierarchy">
3357          <tr>
3358             <th>Super-types:</th>
3359             <td>None</td>
3360          </tr>
3361          <tr>
3362             <th>Sub-types:</th>
3363             <td>None</td>
3364          </tr>
3365       </table>
3366       <table class="properties">
3367          <tr>
3368             <th>Name</th>
3369             <td>SequenceRelation</td>
3370          </tr>
3371          <tr>
3372             <th>Used by (from the same schema document)</th>
3373             <td>Complex Type <b>
3374                   <a href="#h535307528">Phylogeny</a>
3375                </b>
3376             </td>
3377          </tr>
3378          <tr>
3379             <th>
3380                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3381             </th>
3382             <td>no</td>
3383          </tr>
3384       </table>
3385       <div class="sample box">
3386          <div>
3387             <input type="button" id="h-802965662_xibox_button" class="control"
3388                    onclick="switchState('h-802965662_xibox'); return false;"
3389                    style="display: none"/>
3390             <span class="caption">XML Instance Representation</span>
3391          </div>
3392          <div id="h-802965662_xibox" class="contents">
3393             <div style="margin-left: 0em">&lt;...<br/>
3394                <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
3395                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3396                   </span>
3397                   <span class="occurs">[1]</span>"</span>
3398                <br/>
3399                <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
3400                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3401                   </span>
3402                   <span class="occurs">[1]</span>"</span>
3403                <br/>
3404                <span style="margin-left: 0.5em"> distance="<span class="type">
3405                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3406                   <span class="occurs">[0..1]</span>"</span>
3407                <br/>
3408                <span style="margin-left: 0.5em"> type="<span class="type">
3409                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelationType&#34; type definition." href="#h519911868">SequenceRelationType</a>
3410                   </span>
3411                   <span class="occurs">[1]</span>"</span>&gt; <br/>
3412                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
3413                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
3414                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
3415                </div>&lt;/...&gt;</div>
3416          </div>
3417          <script type="text/javascript">
3418 <!--
3419           setState('h-802965662_xibox', true);
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3422       </div>
3423       <div class="sample box">
3424          <div>
3425             <input type="button" id="h-802965662_diagram_button" class="control"
3426                    onclick="switchState('h-802965662_diagram'); return false;"
3427                    style="display: none"/>
3428             <span class="caption">Diagram</span>
3429          </div>
3430          <div id="h-802965662_diagram" class="contents">
3431             <img usemap="#h230020485" src="schemaDiagrams/h230020485.png"/>
3432             <!--
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3454       <div class="schemaComponent box">
3455          <div>
3456             <input type="button" id="h-802965662_scbox_button" class="control"
3457                    onclick="switchState('h-802965662_scbox'); return false;"
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3459             <span class="caption">Schema Component Representation</span>
3460          </div>
3461          <div id="h-802965662_scbox" class="contents">
3462             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3463                <span class="scTag">name</span>="<span class="scContent">SequenceRelation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3464                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3465                         <span class="type">
3466                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
3467                         </span>
3468                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3469                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3470                   <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
3471                      <span class="type">
3472                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3473                      </span>
3474                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3475                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3476                   <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
3477                      <span class="type">
3478                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3479                      </span>
3480                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3481                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3482                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
3483                      <span class="type">
3484                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3485                   </span>"/&gt;</div>
3486                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3487                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3488                      <span class="type">
3489                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelationType&#34; type definition." href="#h519911868">SequenceRelationType</a>
3490                      </span>
3491                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3492          </div>
3493          <script type="text/javascript">
3494 <!--
3495           setState('h-802965662_scbox', false);
3496 // -->
3497 </script>
3498       </div>
3499       <div style="text-align: right; clear: both;">
3500          <a href="#top">top</a>
3501       </div>
3502       <hr/>
3503       <h3>Complex Type: <a name="h888650454" class="name">Taxonomy</a>
3504       </h3>
3505       <table class="hierarchy">
3506          <tr>
3507             <th>Super-types:</th>
3508             <td>None</td>
3509          </tr>
3510          <tr>
3511             <th>Sub-types:</th>
3512             <td>None</td>
3513          </tr>
3514       </table>
3515       <table class="properties">
3516          <tr>
3517             <th>Name</th>
3518             <td>Taxonomy</td>
3519          </tr>
3520          <tr>
3521             <th>Used by (from the same schema document)</th>
3522             <td>Complex Type <b>
3523                   <a href="#h-1124608460">Clade</a>
3524                </b>
3525             </td>
3526          </tr>
3527          <tr>
3528             <th>
3529                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3530             </th>
3531             <td>no</td>
3532          </tr>
3533       </table>
3534       <div class="sample box">
3535          <div>
3536             <input type="button" id="h888650454_xibox_button" class="control"
3537                    onclick="switchState('h888650454_xibox'); return false;"
3538                    style="display: none"/>
3539             <span class="caption">XML Instance Representation</span>
3540          </div>
3541          <div id="h888650454_xibox" class="contents">
3542             <div style="margin-left: 0em">&lt;...<br/>
3543                <span style="margin-left: 0.5em"> type="<span class="type">
3544                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3545                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3546                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
3547                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3548                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
3549                </div>
3550                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code&gt; <span class="type">
3551                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;TaxonomyCode&#34; type definition." href="#h712147427">TaxonomyCode</a>
3552                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code&gt; <span class="occurs">[0..1]</span>
3553                </div>
3554                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name&gt; <span class="type">
3555                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name&gt; <span class="occurs">[0..1]</span>
3556                </div>
3557                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name&gt; <span class="type">
3558                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name&gt; <span class="occurs">[0..1]</span>
3559                </div>
3560                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank&gt; <span class="type">
3561                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Rank&#34; type definition." href="#h518348337">Rank</a>
3562                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank&gt; <span class="occurs">[0..1]</span>
3563                </div>
3564                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
3565                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
3566                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
3567                </div>
3568                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3569                </div>&lt;/...&gt;</div>
3570          </div>
3571          <script type="text/javascript">
3572 <!--
3573           setState('h888650454_xibox', true);
3574 // -->
3575 </script>
3576       </div>
3577       <div class="sample box">
3578          <div>
3579             <input type="button" id="h888650454_diagram_button" class="control"
3580                    onclick="switchState('h888650454_diagram'); return false;"
3581                    style="display: none"/>
3582             <span class="caption">Diagram</span>
3583          </div>
3584          <div id="h888650454_diagram" class="contents">
3585             <img usemap="#h992625297" src="schemaDiagrams/h992625297.png"/>
3586             <!--
3587             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h992625297.map--><map name="h992625297">
3588                <area shape="rect" alt="h-853091232" coords="222,0,298,40"
3589                      href="phyloxml.xsd.html#h-853091232"/>
3590
3591                <area shape="rect" alt="h712147427" coords="222,50,306,90"
3592                      href="phyloxml.xsd.html#h712147427"/>
3593
3594                <area shape="rect" alt="h518348337" coords="222,200,306,240"
3595                      href="phyloxml.xsd.html#h518348337"/>
3596
3597                <area shape="rect" alt="h-676012345" coords="222,250,299,290"
3598                      href="phyloxml.xsd.html#h-676012345"/>
3599
3600             </map>
3601          </div>
3602          <script type="text/javascript">
3603 <!--
3604           setState('h888650454_diagram', true);
3605 // -->
3606 </script>
3607       </div>
3608       <div class="schemaComponent box">
3609          <div>
3610             <input type="button" id="h888650454_scbox_button" class="control"
3611                    onclick="switchState('h888650454_scbox'); return false;"
3612                    style="display: none"/>
3613             <span class="caption">Schema Component Representation</span>
3614          </div>
3615          <div id="h888650454_scbox" class="contents">
3616             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3617                <span class="scTag">name</span>="<span class="scContent">Taxonomy</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3618                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3619                         <span class="type">
3620                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3621                         </span>
3622                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3623                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3624                      <span class="scTag">name</span>="<span class="scContent">code</span>" <span class="scTag">type</span>="<span class="scContent">
3625                         <span class="type">
3626                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;TaxonomyCode&#34; type definition." href="#h712147427">TaxonomyCode</a>
3627                         </span>
3628                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3629                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3630                      <span class="scTag">name</span>="<span class="scContent">scientific_name</span>" <span class="scTag">type</span>="<span class="scContent">
3631                         <span class="type">
3632                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3633                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3634                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3635                      <span class="scTag">name</span>="<span class="scContent">common_name</span>" <span class="scTag">type</span>="<span class="scContent">
3636                         <span class="type">
3637                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3638                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3639                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3640                      <span class="scTag">name</span>="<span class="scContent">rank</span>" <span class="scTag">type</span>="<span class="scContent">
3641                         <span class="type">
3642                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Rank&#34; type definition." href="#h518348337">Rank</a>
3643                         </span>
3644                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3645                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3646                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
3647                         <span class="type">
3648                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
3649                         </span>
3650                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3651                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
3652                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3653                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3654                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3655                      <span class="type">
3656                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3657                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3658          </div>
3659          <script type="text/javascript">
3660 <!--
3661           setState('h888650454_scbox', false);
3662 // -->
3663 </script>
3664       </div>
3665       <div style="text-align: right; clear: both;">
3666          <a href="#top">top</a>
3667       </div>
3668       <hr/>
3669       <h3>Complex Type: <a name="h-676012345" class="name">Uri</a>
3670       </h3>
3671       <table class="hierarchy">
3672          <tr>
3673             <th>Super-types:</th>
3674             <td>
3675                <span class="type">
3676                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span> &lt; <strong>Uri</strong> (by extension)</td>
3677          </tr>
3678          <tr>
3679             <th>Sub-types:</th>
3680             <td>None</td>
3681          </tr>
3682       </table>
3683       <table class="properties">
3684          <tr>
3685             <th>Name</th>
3686             <td>Uri</td>
3687          </tr>
3688          <tr>
3689             <th>Used by (from the same schema document)</th>
3690             <td>Complex Type <b>
3691                   <a href="#h888650454">Taxonomy</a>
3692                </b>, Complex Type <b>
3693                   <a href="#h-1794244794">Sequence</a>
3694                </b>, Complex Type <b>
3695                   <a href="#h917087604">Annotation</a>
3696                </b>
3697             </td>
3698          </tr>
3699          <tr>
3700             <th>
3701                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3702             </th>
3703             <td>no</td>
3704          </tr>
3705       </table>
3706       <div class="sample box">
3707          <div>
3708             <input type="button" id="h-676012345_xibox_button" class="control"
3709                    onclick="switchState('h-676012345_xibox'); return false;"
3710                    style="display: none"/>
3711             <span class="caption">XML Instance Representation</span>
3712          </div>
3713          <div id="h-676012345_xibox" class="contents">
3714             <div style="margin-left: 0em">&lt;...<br/>
3715                <span style="margin-left: 0.5em" class="newFields"> desc="<span class="type">
3716                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3717                   <span class="occurs">[0..1]</span>"</span>
3718                <br/>
3719                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
3720                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3721                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3722                <span style="margin-left: 1.5em">
3723                   <span class="type">
3724                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
3725                </span>
3726                <br/>&lt;/...&gt;</div>
3727          </div>
3728          <script type="text/javascript">
3729 <!--
3730           setState('h-676012345_xibox', true);
3731 // -->
3732 </script>
3733       </div>
3734       <div class="sample box">
3735          <div>
3736             <input type="button" id="h-676012345_diagram_button" class="control"
3737                    onclick="switchState('h-676012345_diagram'); return false;"
3738                    style="display: none"/>
3739             <span class="caption">Diagram</span>
3740          </div>
3741          <div id="h-676012345_diagram" class="contents">
3742             <img usemap="#h-1930055872" src="schemaDiagrams/h-1930055872.png"/>
3743             <!--
3744             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1930055872.map--><map name="h-1930055872">
3745 </map>
3746          </div>
3747          <script type="text/javascript">
3748 <!--
3749           setState('h-676012345_diagram', true);
3750 // -->
3751 </script>
3752       </div>
3753       <div class="schemaComponent box">
3754          <div>
3755             <input type="button" id="h-676012345_scbox_button" class="control"
3756                    onclick="switchState('h-676012345_scbox'); return false;"
3757                    style="display: none"/>
3758             <span class="caption">Schema Component Representation</span>
3759          </div>
3760          <div id="h-676012345_scbox" class="contents">
3761             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3762                <span class="scTag">name</span>="<span class="scContent">Uri</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
3763                      <span class="scTag">base</span>="<span class="scContent">
3764                         <span class="type">
3765                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
3766                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3767                         <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
3768                            <span class="type">
3769                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3770                         </span>"/&gt;</div>
3771                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3772                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3773                            <span class="type">
3774                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3775                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3776          </div>
3777          <script type="text/javascript">
3778 <!--
3779           setState('h-676012345_scbox', false);
3780 // -->
3781 </script>
3782       </div>
3783       <div style="text-align: right; clear: both;">
3784          <a href="#top">top</a>
3785       </div>
3786       <hr/>
3787       <h3>Simple Type: <a name="h-1670259669" class="name">CustomProperty</a>
3788       </h3>
3789       <table class="hierarchy">
3790          <tr>
3791             <th>Super-types:</th>
3792             <td>
3793                <span class="type">
3794                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>CustomProperty</strong> (by restriction)</td>
3795          </tr>
3796          <tr>
3797             <th>Sub-types:</th>
3798             <td>None</td>
3799          </tr>
3800       </table>
3801       <table class="properties">
3802          <tr>
3803             <th>Name</th>
3804             <td>CustomProperty</td>
3805          </tr>
3806          <tr>
3807             <th>Used by (from the same schema document)</th>
3808             <td>Complex Type <b>
3809                   <a href="#h-494260170">Custom</a>
3810                </b>
3811             </td>
3812          </tr>
3813          <tr>
3814             <th>Content</th>
3815             <td>
3816                <ul>
3817                   <li>Base XSD Type: token</li>
3818                </ul>
3819                <ul>
3820                   <li>
3821                      <em>value</em> comes from list: {'phylogeny'|'clade'|'node'|'sequence'|'taxonomy'|'other'}</li>
3822                </ul>
3823             </td>
3824          </tr>
3825       </table>
3826       <div class="sample box">
3827          <div>
3828             <input type="button" id="h-1670259669_diagram_button" class="control"
3829                    onclick="switchState('h-1670259669_diagram'); return false;"
3830                    style="display: none"/>
3831             <span class="caption">Diagram</span>
3832          </div>
3833          <div id="h-1670259669_diagram" class="contents">
3834             <img usemap="#h191215708" src="schemaDiagrams/h191215708.png"/>
3835             <!--
3836             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h191215708.map--><map name="h191215708">
3837 </map>
3838          </div>
3839          <script type="text/javascript">
3840 <!--
3841           setState('h-1670259669_diagram', true);
3842 // -->
3843 </script>
3844       </div>
3845       <div class="schemaComponent box">
3846          <div>
3847             <input type="button" id="h-1670259669_scbox_button" class="control"
3848                    onclick="switchState('h-1670259669_scbox'); return false;"
3849                    style="display: none"/>
3850             <span class="caption">Schema Component Representation</span>
3851          </div>
3852          <div id="h-1670259669_scbox" class="contents">
3853             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
3854                <span class="scTag">name</span>="<span class="scContent">CustomProperty</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
3855                   <span class="scTag">base</span>="<span class="scContent">
3856                      <span class="type">
3857                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3858                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3859                      <span class="scTag">value</span>="<span class="scContent">phylogeny</span>"/&gt;</div>
3860                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3861                      <span class="scTag">value</span>="<span class="scContent">clade</span>"/&gt;</div>
3862                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3863                      <span class="scTag">value</span>="<span class="scContent">node</span>"/&gt;</div>
3864                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3865                      <span class="scTag">value</span>="<span class="scContent">sequence</span>"/&gt;</div>
3866                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3867                      <span class="scTag">value</span>="<span class="scContent">taxonomy</span>"/&gt;</div>
3868                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3869                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
3870          </div>
3871          <script type="text/javascript">
3872 <!--
3873           setState('h-1670259669_scbox', false);
3874 // -->
3875 </script>
3876       </div>
3877       <div style="text-align: right; clear: both;">
3878          <a href="#top">top</a>
3879       </div>
3880       <hr/>
3881       <h3>Simple Type: <a name="h890448016" class="name">CustomType</a>
3882       </h3>
3883       <table class="hierarchy">
3884          <tr>
3885             <th>Super-types:</th>
3886             <td>
3887                <span class="type">
3888                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>CustomType</strong> (by restriction)</td>
3889          </tr>
3890          <tr>
3891             <th>Sub-types:</th>
3892             <td>None</td>
3893          </tr>
3894       </table>
3895       <table class="properties">
3896          <tr>
3897             <th>Name</th>
3898             <td>CustomType</td>
3899          </tr>
3900          <tr>
3901             <th>Used by (from the same schema document)</th>
3902             <td>Complex Type <b>
3903                   <a href="#h-494260170">Custom</a>
3904                </b>
3905             </td>
3906          </tr>
3907          <tr>
3908             <th>Content</th>
3909             <td>
3910                <ul>
3911                   <li>Base XSD Type: token</li>
3912                </ul>
3913                <ul>
3914                   <li>
3915                      <em>value</em> comes from list: {'string'|'character'|'decimal'|'integer'|'byte'|'boolean'|'uri'|'other'}</li>
3916                </ul>
3917             </td>
3918          </tr>
3919       </table>
3920       <div class="sample box">
3921          <div>
3922             <input type="button" id="h890448016_diagram_button" class="control"
3923                    onclick="switchState('h890448016_diagram'); return false;"
3924                    style="display: none"/>
3925             <span class="caption">Diagram</span>
3926          </div>
3927          <div id="h890448016_diagram" class="contents">
3928             <img usemap="#h-1752265449" src="schemaDiagrams/h-1752265449.png"/>
3929             <!--
3930             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1752265449.map--><map name="h-1752265449">
3931 </map>
3932          </div>
3933          <script type="text/javascript">
3934 <!--
3935           setState('h890448016_diagram', true);
3936 // -->
3937 </script>
3938       </div>
3939       <div class="schemaComponent box">
3940          <div>
3941             <input type="button" id="h890448016_scbox_button" class="control"
3942                    onclick="switchState('h890448016_scbox'); return false;"
3943                    style="display: none"/>
3944             <span class="caption">Schema Component Representation</span>
3945          </div>
3946          <div id="h890448016_scbox" class="contents">
3947             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
3948                <span class="scTag">name</span>="<span class="scContent">CustomType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
3949                   <span class="scTag">base</span>="<span class="scContent">
3950                      <span class="type">
3951                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3952                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3953                      <span class="scTag">value</span>="<span class="scContent">string</span>"/&gt;</div>
3954                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3955                      <span class="scTag">value</span>="<span class="scContent">character</span>"/&gt;</div>
3956                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3957                      <span class="scTag">value</span>="<span class="scContent">decimal</span>"/&gt;</div>
3958                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3959                      <span class="scTag">value</span>="<span class="scContent">integer</span>"/&gt;</div>
3960                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3961                      <span class="scTag">value</span>="<span class="scContent">byte</span>"/&gt;</div>
3962                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3963                      <span class="scTag">value</span>="<span class="scContent">boolean</span>"/&gt;</div>
3964                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3965                      <span class="scTag">value</span>="<span class="scContent">uri</span>"/&gt;</div>
3966                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
3967                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
3968          </div>
3969          <script type="text/javascript">
3970 <!--
3971           setState('h890448016_scbox', false);
3972 // -->
3973 </script>
3974       </div>
3975       <div style="text-align: right; clear: both;">
3976          <a href="#top">top</a>
3977       </div>
3978       <hr/>
3979       <h3>Simple Type: <a name="h-979596407" class="name">Distribution</a>
3980       </h3>
3981       <table class="hierarchy">
3982          <tr>
3983             <th>Super-types:</th>
3984             <td>
3985                <span class="type">
3986                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Distribution</strong> (by restriction)</td>
3987          </tr>
3988          <tr>
3989             <th>Sub-types:</th>
3990             <td>None</td>
3991          </tr>
3992       </table>
3993       <table class="properties">
3994          <tr>
3995             <th>Name</th>
3996             <td>Distribution</td>
3997          </tr>
3998          <tr>
3999             <th>Content</th>
4000             <td>
4001                <ul>
4002                   <li>Base XSD Type: token</li>
4003                </ul>
4004             </td>
4005          </tr>
4006       </table>
4007       <div class="sample box">
4008          <div>
4009             <input type="button" id="h-979596407_diagram_button" class="control"
4010                    onclick="switchState('h-979596407_diagram'); return false;"
4011                    style="display: none"/>
4012             <span class="caption">Diagram</span>
4013          </div>
4014          <div id="h-979596407_diagram" class="contents">
4015             <img usemap="#h-265752642" src="schemaDiagrams/h-265752642.png"/>
4016             <!--
4017             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-265752642.map--><map name="h-265752642">
4018 </map>
4019          </div>
4020          <script type="text/javascript">
4021 <!--
4022           setState('h-979596407_diagram', true);
4023 // -->
4024 </script>
4025       </div>
4026       <div class="schemaComponent box">
4027          <div>
4028             <input type="button" id="h-979596407_scbox_button" class="control"
4029                    onclick="switchState('h-979596407_scbox'); return false;"
4030                    style="display: none"/>
4031             <span class="caption">Schema Component Representation</span>
4032          </div>
4033          <div id="h-979596407_scbox" class="contents">
4034             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4035                <span class="scTag">name</span>="<span class="scContent">Distribution</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4036                   <span class="scTag">base</span>="<span class="scContent">
4037                      <span class="type">
4038                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4039                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4040          </div>
4041          <script type="text/javascript">
4042 <!--
4043           setState('h-979596407_scbox', false);
4044 // -->
4045 </script>
4046       </div>
4047       <div style="text-align: right; clear: both;">
4048          <a href="#top">top</a>
4049       </div>
4050       <hr/>
4051       <h3>Simple Type: <a name="h1358103055" class="name">EventType</a>
4052       </h3>
4053       <table class="hierarchy">
4054          <tr>
4055             <th>Super-types:</th>
4056             <td>
4057                <span class="type">
4058                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>EventType</strong> (by restriction)</td>
4059          </tr>
4060          <tr>
4061             <th>Sub-types:</th>
4062             <td>None</td>
4063          </tr>
4064       </table>
4065       <table class="properties">
4066          <tr>
4067             <th>Name</th>
4068             <td>EventType</td>
4069          </tr>
4070          <tr>
4071             <th>Used by (from the same schema document)</th>
4072             <td>Complex Type <b>
4073                   <a href="#h-1122459339">Event</a>
4074                </b>
4075             </td>
4076          </tr>
4077          <tr>
4078             <th>Content</th>
4079             <td>
4080                <ul>
4081                   <li>Base XSD Type: token</li>
4082                </ul>
4083                <ul>
4084                   <li>
4085                      <em>value</em> comes from list: {'transfer'|'fusion'|'root'|'speciation_or_duplication'|'other'|'mixed'|'unassigned'}</li>
4086                </ul>
4087             </td>
4088          </tr>
4089       </table>
4090       <div class="sample box">
4091          <div>
4092             <input type="button" id="h1358103055_diagram_button" class="control"
4093                    onclick="switchState('h1358103055_diagram'); return false;"
4094                    style="display: none"/>
4095             <span class="caption">Diagram</span>
4096          </div>
4097          <div id="h1358103055_diagram" class="contents">
4098             <img usemap="#h77064440" src="schemaDiagrams/h77064440.png"/>
4099             <!--
4100             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h77064440.map--><map name="h77064440">
4101 </map>
4102          </div>
4103          <script type="text/javascript">
4104 <!--
4105           setState('h1358103055_diagram', true);
4106 // -->
4107 </script>
4108       </div>
4109       <div class="schemaComponent box">
4110          <div>
4111             <input type="button" id="h1358103055_scbox_button" class="control"
4112                    onclick="switchState('h1358103055_scbox'); return false;"
4113                    style="display: none"/>
4114             <span class="caption">Schema Component Representation</span>
4115          </div>
4116          <div id="h1358103055_scbox" class="contents">
4117             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4118                <span class="scTag">name</span>="<span class="scContent">EventType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4119                   <span class="scTag">base</span>="<span class="scContent">
4120                      <span class="type">
4121                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4122                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4123                      <span class="scTag">value</span>="<span class="scContent">transfer</span>"/&gt;</div>
4124                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4125                      <span class="scTag">value</span>="<span class="scContent">fusion</span>"/&gt;</div>
4126                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4127                      <span class="scTag">value</span>="<span class="scContent">root</span>"/&gt;</div>
4128                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4129                      <span class="scTag">value</span>="<span class="scContent">speciation_or_duplication</span>"/&gt;</div>
4130                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4131                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>
4132                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4133                      <span class="scTag">value</span>="<span class="scContent">mixed</span>"/&gt;</div>
4134                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4135                      <span class="scTag">value</span>="<span class="scContent">unassigned</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4136          </div>
4137          <script type="text/javascript">
4138 <!--
4139           setState('h1358103055_scbox', false);
4140 // -->
4141 </script>
4142       </div>
4143       <div style="text-align: right; clear: both;">
4144          <a href="#top">top</a>
4145       </div>
4146       <hr/>
4147       <h3>Simple Type: <a name="h-213750342" class="name">MolSeq</a>
4148       </h3>
4149       <table class="hierarchy">
4150          <tr>
4151             <th>Super-types:</th>
4152             <td>
4153                <span class="type">
4154                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>MolSeq</strong> (by restriction)</td>
4155          </tr>
4156          <tr>
4157             <th>Sub-types:</th>
4158             <td>None</td>
4159          </tr>
4160       </table>
4161       <table class="properties">
4162          <tr>
4163             <th>Name</th>
4164             <td>MolSeq</td>
4165          </tr>
4166          <tr>
4167             <th>Used by (from the same schema document)</th>
4168             <td>Complex Type <b>
4169                   <a href="#h-1794244794">Sequence</a>
4170                </b>
4171             </td>
4172          </tr>
4173          <tr>
4174             <th>Content</th>
4175             <td>
4176                <ul>
4177                   <li>Base XSD Type: token</li>
4178                </ul>
4179                <ul>
4180                   <li>
4181                      <em>pattern</em> = [a-zA-Z\.\-\?\*_]+</li>
4182                </ul>
4183             </td>
4184          </tr>
4185       </table>
4186       <div class="sample box">
4187          <div>
4188             <input type="button" id="h-213750342_diagram_button" class="control"
4189                    onclick="switchState('h-213750342_diagram'); return false;"
4190                    style="display: none"/>
4191             <span class="caption">Diagram</span>
4192          </div>
4193          <div id="h-213750342_diagram" class="contents">
4194             <img usemap="#h-100858323" src="schemaDiagrams/h-100858323.png"/>
4195             <!--
4196             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-100858323.map--><map name="h-100858323">
4197 </map>
4198          </div>
4199          <script type="text/javascript">
4200 <!--
4201           setState('h-213750342_diagram', true);
4202 // -->
4203 </script>
4204       </div>
4205       <div class="schemaComponent box">
4206          <div>
4207             <input type="button" id="h-213750342_scbox_button" class="control"
4208                    onclick="switchState('h-213750342_scbox'); return false;"
4209                    style="display: none"/>
4210             <span class="caption">Schema Component Representation</span>
4211          </div>
4212          <div id="h-213750342_scbox" class="contents">
4213             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4214                <span class="scTag">name</span>="<span class="scContent">MolSeq</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4215                   <span class="scTag">base</span>="<span class="scContent">
4216                      <span class="type">
4217                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4218                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
4219                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z\.\-\?\*_]+</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4220          </div>
4221          <script type="text/javascript">
4222 <!--
4223           setState('h-213750342_scbox', false);
4224 // -->
4225 </script>
4226       </div>
4227       <div style="text-align: right; clear: both;">
4228          <a href="#top">top</a>
4229       </div>
4230       <hr/>
4231       <h3>Simple Type: <a name="h518348337" class="name">Rank</a>
4232       </h3>
4233       <table class="hierarchy">
4234          <tr>
4235             <th>Super-types:</th>
4236             <td>
4237                <span class="type">
4238                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Rank</strong> (by restriction)</td>
4239          </tr>
4240          <tr>
4241             <th>Sub-types:</th>
4242             <td>None</td>
4243          </tr>
4244       </table>
4245       <table class="properties">
4246          <tr>
4247             <th>Name</th>
4248             <td>Rank</td>
4249          </tr>
4250          <tr>
4251             <th>Used by (from the same schema document)</th>
4252             <td>Complex Type <b>
4253                   <a href="#h888650454">Taxonomy</a>
4254                </b>
4255             </td>
4256          </tr>
4257          <tr>
4258             <th>Content</th>
4259             <td>
4260                <ul>
4261                   <li>Base XSD Type: token</li>
4262                </ul>
4263                <ul>
4264                   <li>
4265                      <em>value</em> comes from list: {'domain'|'kingdom'|'branch'|'phylum'|'subphylum'|'division'|'superclass'|'class'|'subclass'|'superorder'|'order'|'suborder'|'superfamily'|'family'|'subfamily'|'genus'|'subgenus'|'species'|'subspecies'|'variety'|'form'|'cultivar'|'unknown'|'other'}</li>
4266                </ul>
4267             </td>
4268          </tr>
4269       </table>
4270       <div class="sample box">
4271          <div>
4272             <input type="button" id="h518348337_diagram_button" class="control"
4273                    onclick="switchState('h518348337_diagram'); return false;"
4274                    style="display: none"/>
4275             <span class="caption">Diagram</span>
4276          </div>
4277          <div id="h518348337_diagram" class="contents">
4278             <img usemap="#h-1363552746" src="schemaDiagrams/h-1363552746.png"/>
4279             <!--
4280             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1363552746.map--><map name="h-1363552746">
4281 </map>
4282          </div>
4283          <script type="text/javascript">
4284 <!--
4285           setState('h518348337_diagram', true);
4286 // -->
4287 </script>
4288       </div>
4289       <div class="schemaComponent box">
4290          <div>
4291             <input type="button" id="h518348337_scbox_button" class="control"
4292                    onclick="switchState('h518348337_scbox'); return false;"
4293                    style="display: none"/>
4294             <span class="caption">Schema Component Representation</span>
4295          </div>
4296          <div id="h518348337_scbox" class="contents">
4297             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4298                <span class="scTag">name</span>="<span class="scContent">Rank</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4299                   <span class="scTag">base</span>="<span class="scContent">
4300                      <span class="type">
4301                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4302                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4303                      <span class="scTag">value</span>="<span class="scContent">domain</span>"/&gt;</div>
4304                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4305                      <span class="scTag">value</span>="<span class="scContent">kingdom</span>"/&gt;</div>
4306                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4307                      <span class="scTag">value</span>="<span class="scContent">branch</span>"/&gt;</div>
4308                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4309                      <span class="scTag">value</span>="<span class="scContent">phylum</span>"/&gt;</div>
4310                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4311                      <span class="scTag">value</span>="<span class="scContent">subphylum</span>"/&gt;</div>
4312                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4313                      <span class="scTag">value</span>="<span class="scContent">division</span>"/&gt;</div>
4314                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4315                      <span class="scTag">value</span>="<span class="scContent">superclass</span>"/&gt;</div>
4316                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4317                      <span class="scTag">value</span>="<span class="scContent">class</span>"/&gt;</div>
4318                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4319                      <span class="scTag">value</span>="<span class="scContent">subclass</span>"/&gt;</div>
4320                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4321                      <span class="scTag">value</span>="<span class="scContent">superorder</span>"/&gt;</div>
4322                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4323                      <span class="scTag">value</span>="<span class="scContent">order</span>"/&gt;</div>
4324                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4325                      <span class="scTag">value</span>="<span class="scContent">suborder</span>"/&gt;</div>
4326                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4327                      <span class="scTag">value</span>="<span class="scContent">superfamily</span>"/&gt;</div>
4328                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4329                      <span class="scTag">value</span>="<span class="scContent">family</span>"/&gt;</div>
4330                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4331                      <span class="scTag">value</span>="<span class="scContent">subfamily</span>"/&gt;</div>
4332                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4333                      <span class="scTag">value</span>="<span class="scContent">genus</span>"/&gt;</div>
4334                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4335                      <span class="scTag">value</span>="<span class="scContent">subgenus</span>"/&gt;</div>
4336                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4337                      <span class="scTag">value</span>="<span class="scContent">species</span>"/&gt;</div>
4338                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4339                      <span class="scTag">value</span>="<span class="scContent">subspecies</span>"/&gt;</div>
4340                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4341                      <span class="scTag">value</span>="<span class="scContent">variety</span>"/&gt;</div>
4342                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4343                      <span class="scTag">value</span>="<span class="scContent">form</span>"/&gt;</div>
4344                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4345                      <span class="scTag">value</span>="<span class="scContent">cultivar</span>"/&gt;</div>
4346                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4347                      <span class="scTag">value</span>="<span class="scContent">unknown</span>"/&gt;</div>
4348                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4349                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4350          </div>
4351          <script type="text/javascript">
4352 <!--
4353           setState('h518348337_scbox', false);
4354 // -->
4355 </script>
4356       </div>
4357       <div style="text-align: right; clear: both;">
4358          <a href="#top">top</a>
4359       </div>
4360       <hr/>
4361       <h3>Simple Type: <a name="h519911868" class="name">SequenceRelationType</a>
4362       </h3>
4363       <table class="hierarchy">
4364          <tr>
4365             <th>Super-types:</th>
4366             <td>
4367                <span class="type">
4368                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceRelationType</strong> (by restriction)</td>
4369          </tr>
4370          <tr>
4371             <th>Sub-types:</th>
4372             <td>None</td>
4373          </tr>
4374       </table>
4375       <table class="properties">
4376          <tr>
4377             <th>Name</th>
4378             <td>SequenceRelationType</td>
4379          </tr>
4380          <tr>
4381             <th>Used by (from the same schema document)</th>
4382             <td>Complex Type <b>
4383                   <a href="#h-802965662">SequenceRelation</a>
4384                </b>
4385             </td>
4386          </tr>
4387          <tr>
4388             <th>Content</th>
4389             <td>
4390                <ul>
4391                   <li>Base XSD Type: token</li>
4392                </ul>
4393                <ul>
4394                   <li>
4395                      <em>value</em> comes from list: {'orthology'|'one_to_one_orthology'|'super_orthology'|'paralogy'|'ultra_paralogy'|'xenology'|'unknown'|'other'}</li>
4396                </ul>
4397             </td>
4398          </tr>
4399       </table>
4400       <div class="sample box">
4401          <div>
4402             <input type="button" id="h519911868_diagram_button" class="control"
4403                    onclick="switchState('h519911868_diagram'); return false;"
4404                    style="display: none"/>
4405             <span class="caption">Diagram</span>
4406          </div>
4407          <div id="h519911868_diagram" class="contents">
4408             <img usemap="#h-465227925" src="schemaDiagrams/h-465227925.png"/>
4409             <!--
4410             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-465227925.map--><map name="h-465227925">
4411 </map>
4412          </div>
4413          <script type="text/javascript">
4414 <!--
4415           setState('h519911868_diagram', true);
4416 // -->
4417 </script>
4418       </div>
4419       <div class="schemaComponent box">
4420          <div>
4421             <input type="button" id="h519911868_scbox_button" class="control"
4422                    onclick="switchState('h519911868_scbox'); return false;"
4423                    style="display: none"/>
4424             <span class="caption">Schema Component Representation</span>
4425          </div>
4426          <div id="h519911868_scbox" class="contents">
4427             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4428                <span class="scTag">name</span>="<span class="scContent">SequenceRelationType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4429                   <span class="scTag">base</span>="<span class="scContent">
4430                      <span class="type">
4431                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4432                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4433                      <span class="scTag">value</span>="<span class="scContent">orthology</span>"/&gt;</div>
4434                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4435                      <span class="scTag">value</span>="<span class="scContent">one_to_one_orthology</span>"/&gt;</div>
4436                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4437                      <span class="scTag">value</span>="<span class="scContent">super_orthology</span>"/&gt;</div>
4438                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4439                      <span class="scTag">value</span>="<span class="scContent">paralogy</span>"/&gt;</div>
4440                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4441                      <span class="scTag">value</span>="<span class="scContent">ultra_paralogy</span>"/&gt;</div>
4442                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4443                      <span class="scTag">value</span>="<span class="scContent">xenology</span>"/&gt;</div>
4444                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4445                      <span class="scTag">value</span>="<span class="scContent">unknown</span>"/&gt;</div>
4446                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4447                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4448          </div>
4449          <script type="text/javascript">
4450 <!--
4451           setState('h519911868_scbox', false);
4452 // -->
4453 </script>
4454       </div>
4455       <div style="text-align: right; clear: both;">
4456          <a href="#top">top</a>
4457       </div>
4458       <hr/>
4459       <h3>Simple Type: <a name="h712147427" class="name">TaxonomyCode</a>
4460       </h3>
4461       <table class="hierarchy">
4462          <tr>
4463             <th>Super-types:</th>
4464             <td>
4465                <span class="type">
4466                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>TaxonomyCode</strong> (by restriction)</td>
4467          </tr>
4468          <tr>
4469             <th>Sub-types:</th>
4470             <td>None</td>
4471          </tr>
4472       </table>
4473       <table class="properties">
4474          <tr>
4475             <th>Name</th>
4476             <td>TaxonomyCode</td>
4477          </tr>
4478          <tr>
4479             <th>Used by (from the same schema document)</th>
4480             <td>Complex Type <b>
4481                   <a href="#h888650454">Taxonomy</a>
4482                </b>
4483             </td>
4484          </tr>
4485          <tr>
4486             <th>Content</th>
4487             <td>
4488                <ul>
4489                   <li>Base XSD Type: token</li>
4490                </ul>
4491                <ul>
4492                   <li>
4493                      <em>pattern</em> = [a-zA-Z0-9_]{2,20}</li>
4494                </ul>
4495             </td>
4496          </tr>
4497       </table>
4498       <div class="sample box">
4499          <div>
4500             <input type="button" id="h712147427_diagram_button" class="control"
4501                    onclick="switchState('h712147427_diagram'); return false;"
4502                    style="display: none"/>
4503             <span class="caption">Diagram</span>
4504          </div>
4505          <div id="h712147427_diagram" class="contents">
4506             <img usemap="#h516707748" src="schemaDiagrams/h516707748.png"/>
4507             <!--
4508             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h516707748.map--><map name="h516707748">
4509 </map>
4510          </div>
4511          <script type="text/javascript">
4512 <!--
4513           setState('h712147427_diagram', true);
4514 // -->
4515 </script>
4516       </div>
4517       <div class="schemaComponent box">
4518          <div>
4519             <input type="button" id="h712147427_scbox_button" class="control"
4520                    onclick="switchState('h712147427_scbox'); return false;"
4521                    style="display: none"/>
4522             <span class="caption">Schema Component Representation</span>
4523          </div>
4524          <div id="h712147427_scbox" class="contents">
4525             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4526                <span class="scTag">name</span>="<span class="scContent">TaxonomyCode</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4527                   <span class="scTag">base</span>="<span class="scContent">
4528                      <span class="type">
4529                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4530                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
4531                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]{2,20}</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4532          </div>
4533          <script type="text/javascript">
4534 <!--
4535           setState('h712147427_scbox', false);
4536 // -->
4537 </script>
4538       </div>
4539       <div style="text-align: right; clear: both;">
4540          <a href="#top">top</a>
4541       </div>
4542       <hr/>
4543       <h3>Simple Type: <a name="h577349652" class="name">id_ref</a>
4544       </h3>
4545       <table class="hierarchy">
4546          <tr>
4547             <th>Super-types:</th>
4548             <td>
4549                <span class="type">
4550                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span> &lt; <strong>id_ref</strong> (by restriction)</td>
4551          </tr>
4552          <tr>
4553             <th>Sub-types:</th>
4554             <td>None</td>
4555          </tr>
4556       </table>
4557       <table class="properties">
4558          <tr>
4559             <th>Name</th>
4560             <td>id_ref</td>
4561          </tr>
4562          <tr>
4563             <th>Used by (from the same schema document)</th>
4564             <td>Complex Type <b>
4565                   <a href="#h-494260170">Custom</a>
4566                </b>, Complex Type <b>
4567                   <a href="#h-802965662">SequenceRelation</a>
4568                </b>, Complex Type <b>
4569                   <a href="#h-802965662">SequenceRelation</a>
4570                </b>, Complex Type <b>
4571                   <a href="#h192331856">CladeRelation</a>
4572                </b>, Complex Type <b>
4573                   <a href="#h192331856">CladeRelation</a>
4574                </b>
4575             </td>
4576          </tr>
4577          <tr>
4578             <th>Content</th>
4579             <td>
4580                <ul>
4581                   <li>Base XSD Type: IDREF</li>
4582                </ul>
4583             </td>
4584          </tr>
4585       </table>
4586       <div class="sample box">
4587          <div>
4588             <input type="button" id="h577349652_diagram_button" class="control"
4589                    onclick="switchState('h577349652_diagram'); return false;"
4590                    style="display: none"/>
4591             <span class="caption">Diagram</span>
4592          </div>
4593          <div id="h577349652_diagram" class="contents">
4594             <img usemap="#h813803539" src="schemaDiagrams/h813803539.png"/>
4595             <!--
4596             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h813803539.map--><map name="h813803539">
4597 </map>
4598          </div>
4599          <script type="text/javascript">
4600 <!--
4601           setState('h577349652_diagram', true);
4602 // -->
4603 </script>
4604       </div>
4605       <div class="schemaComponent box">
4606          <div>
4607             <input type="button" id="h577349652_scbox_button" class="control"
4608                    onclick="switchState('h577349652_scbox'); return false;"
4609                    style="display: none"/>
4610             <span class="caption">Schema Component Representation</span>
4611          </div>
4612          <div id="h577349652_scbox" class="contents">
4613             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4614                <span class="scTag">name</span>="<span class="scContent">id_ref</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4615                   <span class="scTag">base</span>="<span class="scContent">
4616                      <span class="type">
4617                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span>
4618                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4619          </div>
4620          <script type="text/javascript">
4621 <!--
4622           setState('h577349652_scbox', false);
4623 // -->
4624 </script>
4625       </div>
4626       <div style="text-align: right; clear: both;">
4627          <a href="#top">top</a>
4628       </div>
4629       <hr/>
4630       <h3>Simple Type: <a name="h-1482113798" class="name">id_source</a>
4631       </h3>
4632       <table class="hierarchy">
4633          <tr>
4634             <th>Super-types:</th>
4635             <td>
4636                <span class="type">
4637                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span> &lt; <strong>id_source</strong> (by restriction)</td>
4638          </tr>
4639          <tr>
4640             <th>Sub-types:</th>
4641             <td>None</td>
4642          </tr>
4643       </table>
4644       <table class="properties">
4645          <tr>
4646             <th>Name</th>
4647             <td>id_source</td>
4648          </tr>
4649          <tr>
4650             <th>Used by (from the same schema document)</th>
4651             <td>Complex Type <b>
4652                   <a href="#h-1124608460">Clade</a>
4653                </b>, Complex Type <b>
4654                   <a href="#h-1794244794">Sequence</a>
4655                </b>
4656             </td>
4657          </tr>
4658          <tr>
4659             <th>Content</th>
4660             <td>
4661                <ul>
4662                   <li>Base XSD Type: ID</li>
4663                </ul>
4664             </td>
4665          </tr>
4666       </table>
4667       <div class="sample box">
4668          <div>
4669             <input type="button" id="h-1482113798_diagram_button" class="control"
4670                    onclick="switchState('h-1482113798_diagram'); return false;"
4671                    style="display: none"/>
4672             <span class="caption">Diagram</span>
4673          </div>
4674          <div id="h-1482113798_diagram" class="contents">
4675             <img usemap="#h123518701" src="schemaDiagrams/h123518701.png"/>
4676             <!--
4677             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h123518701.map--><map name="h123518701">
4678 </map>
4679          </div>
4680          <script type="text/javascript">
4681 <!--
4682           setState('h-1482113798_diagram', true);
4683 // -->
4684 </script>
4685       </div>
4686       <div class="schemaComponent box">
4687          <div>
4688             <input type="button" id="h-1482113798_scbox_button" class="control"
4689                    onclick="switchState('h-1482113798_scbox'); return false;"
4690                    style="display: none"/>
4691             <span class="caption">Schema Component Representation</span>
4692          </div>
4693          <div id="h-1482113798_scbox" class="contents">
4694             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4695                <span class="scTag">name</span>="<span class="scContent">id_source</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4696                   <span class="scTag">base</span>="<span class="scContent">
4697                      <span class="type">
4698                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span>
4699                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4700          </div>
4701          <script type="text/javascript">
4702 <!--
4703           setState('h-1482113798_scbox', false);
4704 // -->
4705 </script>
4706       </div>
4707       <div style="text-align: right; clear: both;">
4708          <a href="#top">top</a>
4709       </div>
4710       <hr/>
4711       <div id="legend">
4712          <h2>
4713             <a name="Legend">Legend</a>
4714          </h2>
4715          <div style="float: left; width: 15em;">
4716             <h3 style="margin-bottom: 0px;">Complex Type:</h3>
4717             <div class="hint" style="margin-left: 0em;">Schema Component Type</div>
4718          </div>
4719          <div style="float: left; width: 15em;">
4720             <h3 style="margin-bottom: 0px;">
4721                <span class="name">AusAddress</span>
4722             </h3>
4723             <div class="hint" style="margin-left: 0em;">Schema Component Name</div>
4724          </div>
4725          <table class="hierarchy" style="clear : both">
4726             <tr>
4727                <th>Super-types:</th>
4728                <td>
4729                   <span class="type" style="color: #0000FF; text-decoration:underline;">Address</span> &lt; <span class="current">AusAddress</span> (by extension)</td>
4730             </tr>
4731             <tr>
4732                <th>Sub-types:</th>
4733                <td>
4734                   <ul>
4735                      <li>
4736                         <span class="type" style="color: #0000FF; text-decoration:underline;">QLDAddress</span> (by restriction)</li>
4737                   </ul>
4738                </td>
4739             </tr>
4740          </table>
4741          <div class="hint">If this schema component is a type definition, its type hierarchy is shown in a gray-bordered box.</div>
4742          <table class="properties">
4743             <tr>
4744                <th>Name</th>
4745                <td>AusAddress</td>
4746             </tr>
4747             <tr>
4748                <th>
4749                   <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4750                </th>
4751                <td>no</td>
4752             </tr>
4753          </table>
4754          <div class="hint">The table above displays the properties of this schema component.</div>
4755          <div class="sample box">
4756             <div>
4757                <span class="caption">XML Instance Representation</span>
4758             </div>
4759             <div class="contents">
4760                <span style="margin-left: 0em">&lt;...</span>
4761                <span class="newFields">
4762                   <span> country="<span class="fixed">Australia</span>"</span>
4763                </span>&gt; <br/>
4764                <span style="margin-left: 1.5em" class="inherited">&lt;unitNo&gt; <span class="type">string</span> &lt;/unitNo&gt; <span class="occurs">[0..1]</span>
4765                </span>
4766                <br/>
4767                <span style="margin-left: 1.5em" class="inherited">&lt;houseNo&gt; <span class="type">string</span> &lt;/houseNo&gt; <span class="occurs">[1]</span>
4768                </span>
4769                <br/>
4770                <span style="margin-left: 1.5em" class="inherited">&lt;street&gt; <span class="type">string</span> &lt;/street&gt; <span class="occurs">[1]</span>
4771                </span>
4772                <br/>
4773                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Choice' in glossary" href="#term_Choice">Choice</a>
4774                   <span class="occurs">[1]</span>
4775                </span>
4776                <br/>
4777                <span style="margin-left: 3em" class="inherited">&lt;city&gt; <span class="type">string</span> &lt;/city&gt; <span class="occurs">[1]</span>
4778                </span>
4779                <br/>
4780                <span style="margin-left: 3em" class="inherited">&lt;town&gt; <span class="type">string</span> &lt;/town&gt; <span class="occurs">[1]</span>
4781                </span>
4782                <br/>
4783                <span class="group" style="margin-left: 1.5em">End Choice</span>
4784                <br/>
4785                <span class="newFields">
4786                   <span style="margin-left: 1.5em">&lt;state&gt; <span class="type" style="text-decoration:underline;">AusStates</span> &lt;/state&gt; <span class="occurs">[1]</span>
4787                   </span>
4788                   <br/>
4789                   <span style="margin-left: 1.5em">&lt;postcode&gt; <span class="constraint">string &lt;&lt;<em>pattern</em> = [1-9][0-9]{3}&gt;&gt;</span> &lt;/postcode&gt; <span class="occurs">[1]</span>
4790                      <a href="javascript:void(0)" title="View Documentation" class="documentation"
4791                         onclick="docArray = new Array('Post code must be a four-digit number.'); viewDocumentation('Element', 'postcode', docArray);">?</a>
4792                   </span>
4793                   <br/>
4794                </span>
4795                <span style="margin-left: 0em">&lt;/...&gt;</span>
4796                <br/>
4797             </div>
4798          </div>
4799          <div class="hint">
4800             <p>The XML Instance Representation table above shows the schema component's content as an XML instance.</p>
4801             <ul>
4802                <li>The minimum and maximum occurrence of elements and attributes are provided in square brackets, e.g. [0..1].</li>
4803                <li>Model group information are shown in gray, e.g. Start Choice ... End Choice.</li>
4804                <li>For type derivations, the elements and attributes that have been added to or changed from the base type's content are shown in <span style="font-weight: bold">bold</span>.</li>
4805                <li>If an element/attribute has a fixed value, the fixed value is shown in green, e.g. country="Australia".</li>
4806                <li>Otherwise, the type of the element/attribute is displayed.
4807                <ul>
4808                      <li>If the element/attribute's type is in the schema, a link is provided to it.</li>
4809                      <li>For local simple type definitions, the constraints are displayed in angle brackets, e.g. &lt;&lt;<em>pattern</em> = [1-9][0-9]{3}&gt;&gt;.</li>
4810                   </ul>
4811                </li>
4812                <li>If a local element/attribute has documentation, it will be displayed in a window that pops up when the question mark inside the attribute or next to the element is clicked, e.g. &lt;postcode&gt;.</li>
4813             </ul>
4814          </div>
4815          <div class="schemaComponent box">
4816             <div>
4817                <span class="caption">Schema Component Representation</span>
4818             </div>
4819             <div class="contents">
4820                <span style="margin-left: 0em">&lt;<span class="scTag">complexType</span>
4821                   <span class="scTag">name</span>="<span class="scContent">AusAddress</span>"&gt;</span>
4822                <br/>
4823                <span style="margin-left: 1.5em">&lt;<span class="scTag">complexContent</span>&gt;</span>
4824                <br/>
4825                <span style="margin-left: 3em">&lt;<span class="scTag">extension</span>
4826                   <span class="scTag">base</span>="<span class="scContent">
4827                      <span class="type" style="text-decoration:underline;">Address</span>
4828                   </span>"&gt;</span>
4829                <br/>
4830                <span style="margin-left: 4.5em">&lt;<span class="scTag">sequence</span>&gt;</span>
4831                <br/>
4832                <span style="margin-left: 6em">&lt;<span class="scTag">element</span>
4833                   <span class="scTag">name</span>="<span class="scContent">state</span>" <span class="scTag">type</span>="<span class="scContent">
4834                      <span class="type" style="text-decoration:underline;">AusStates</span>
4835                   </span>"/&gt;</span>
4836                <br/>
4837                <span style="margin-left: 6em">&lt;<span class="scTag">element</span>
4838                   <span class="scTag">name</span>="<span class="scContent">postcode</span>"&gt;</span>
4839                <br/>
4840                <span style="margin-left: 7.5em">&lt;<span class="scTag">simpleType</span>&gt;</span>
4841                <br/>
4842                <span style="margin-left: 9em">&lt;<span class="scTag">restriction</span>
4843                   <span class="scTag">base</span>="<span class="scContent">
4844                      <span class="type">string</span>
4845                   </span>"&gt;</span>
4846                <br/>
4847                <span style="margin-left: 10.5em">&lt;<span class="scTag">pattern</span>
4848                   <span class="scTag">value</span>="<span class="scContent">[1-9][0-9]{3}</span>"/&gt;</span>
4849                <br/>
4850                <span style="margin-left: 9em">&lt;/<span class="scTag">restriction</span>&gt;</span>
4851                <br/>
4852                <span style="margin-left: 7.5em">&lt;/<span class="scTag">simpleType</span>&gt;</span>
4853                <br/>
4854                <span style="margin-left: 6em">&lt;/<span class="scTag">element</span>&gt;</span>
4855                <br/>
4856                <span style="margin-left: 4.5em">&lt;/<span class="scTag">sequence</span>&gt;</span>
4857                <br/>
4858                <span style="margin-left: 4.5em">&lt;<span class="scTag">attribute</span>
4859                   <span class="scTag">name</span>="<span class="scContent">country</span>" <span class="scTag">type</span>="<span class="scContent">
4860                      <span class="type">string</span>
4861                   </span>" <span class="scTag">fixed</span>="<span class="scContent">Australia</span>"/&gt;</span>
4862                <br/>
4863                <span style="margin-left: 3em">&lt;/<span class="scTag">extension</span>&gt;</span>
4864                <br/>
4865                <span style="margin-left: 1.5em">&lt;/<span class="scTag">complexContent</span>&gt;</span>
4866                <br/>
4867                <span style="margin-left: 0em">&lt;/<span class="scTag">complexType</span>&gt;</span>
4868                <br/>
4869             </div>
4870          </div>
4871          <div class="hint">The Schema Component Representation table above displays the underlying XML representation of the schema component. (Annotations are not shown.)</div>
4872          <div style="text-align: right; clear: both;">
4873             <a href="#top">top</a>
4874          </div>
4875          <hr/>
4876       </div>
4877       <div id="glossary">
4878          <h2>
4879             <a name="Glossary">Glossary</a>
4880          </h2>
4881          <p>
4882             <span class="glossaryTerm">
4883                <a name="term_Abstract">Abstract</a>
4884             </span>(Applies to complex type definitions and element declarations). An abstract element or complex type cannot used to validate an element instance. If there is a reference to an abstract element, only element declarations that can substitute the abstract element can be used to validate the instance. For references to abstract type definitions, only derived types can be used.</p>
4885          <p>
4886             <span class="glossaryTerm">
4887                <a name="term_All">All Model Group</a>
4888             </span>Child elements can be provided <em>in any order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-all"
4889                href="http://www.w3.org/TR/xmlschema-1/#element-all">http://www.w3.org/TR/xmlschema-1/#element-all</a>.</p>
4890          <p>
4891             <span class="glossaryTerm">
4892                <a name="term_Choice">Choice Model Group</a>
4893             </span>
4894             <em>Only one</em> from the list of child elements and model groups can be provided in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-choice"
4895                href="http://www.w3.org/TR/xmlschema-1/#element-choice">http://www.w3.org/TR/xmlschema-1/#element-choice</a>.</p>
4896          <p>
4897             <span class="glossaryTerm">
4898                <a name="term_CollapseWS">Collapse Whitespace Policy</a>
4899             </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32). Then, collapse contiguous sequences of space characters into single space character, and remove leading and trailing space characters.</p>
4900          <p>
4901             <span class="glossaryTerm">
4902                <a name="term_ElemBlock">Disallowed Substitutions</a>
4903             </span>(Applies to element declarations). If <em>substitution</em> is specified, then <a title="Look up 'substitution group' in glossary"
4904                href="phyloxml.xsd.html#term_SubGroup">substitution group</a> members cannot be used in place of the given element declaration to validate element instances. If <em>derivation methods</em>, e.g. extension, restriction, are specified, then the given element declaration will not validate element instances that have types derived from the element declaration's type using the specified derivation methods. Normally, element instances can override their declaration's type by specifying an <code>xsi:type</code> attribute.</p>
4905          <p>
4906             <span class="glossaryTerm">
4907                <a name="term_Key">Key Constraint</a>
4908             </span>Like <a title="Look up 'Uniqueness Constraint' in glossary"
4909                href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>, but additionally requires that the specified value(s) must be provided. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
4910                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
4911          <p>
4912             <span class="glossaryTerm">
4913                <a name="term_KeyRef">Key Reference Constraint</a>
4914             </span>Ensures that the specified value(s) must match value(s) from a <a title="Look up 'Key Constraint' in glossary" href="phyloxml.xsd.html#term_Key">Key Constraint</a> or <a title="Look up 'Uniqueness Constraint' in glossary"
4915                href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
4916                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
4917          <p>
4918             <span class="glossaryTerm">
4919                <a name="term_ModelGroup">Model Group</a>
4920             </span>Groups together element content, specifying the order in which the element content can occur and the number of times the group of element content may be repeated. See: <a title="http://www.w3.org/TR/xmlschema-1/#Model_Groups"
4921                href="http://www.w3.org/TR/xmlschema-1/#Model_Groups">http://www.w3.org/TR/xmlschema-1/#Model_Groups</a>.</p>
4922          <p>
4923             <span class="glossaryTerm">
4924                <a name="term_Nillable">Nillable</a>
4925             </span>(Applies to element declarations). If an element declaration is nillable, instances can use the <code>xsi:nil</code> attribute. The <code>xsi:nil</code> attribute is the boolean attribute, <em>nil</em>, from the <em>http://www.w3.org/2001/XMLSchema-instance</em> namespace. If an element instance has an <code>xsi:nil</code> attribute set to true, it can be left empty, even though its element declaration may have required content.</p>
4926          <p>
4927             <span class="glossaryTerm">
4928                <a name="term_Notation">Notation</a>
4929             </span>A notation is used to identify the format of a piece of data. Values of elements and attributes that are of type, NOTATION, must come from the names of declared notations. See: <a title="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations"
4930                href="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations">http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations</a>.</p>
4931          <p>
4932             <span class="glossaryTerm">
4933                <a name="term_PreserveWS">Preserve Whitespace Policy</a>
4934             </span>Preserve whitespaces exactly as they appear in instances.</p>
4935          <p>
4936             <span class="glossaryTerm">
4937                <a name="term_TypeFinal">Prohibited Derivations</a>
4938             </span>(Applies to type definitions). Derivation methods that cannot be used to create sub-types from a given type definition.</p>
4939          <p>
4940             <span class="glossaryTerm">
4941                <a name="term_TypeBlock">Prohibited Substitutions</a>
4942             </span>(Applies to complex type definitions). Prevents sub-types that have been derived using the specified derivation methods from validating element instances in place of the given type definition.</p>
4943          <p>
4944             <span class="glossaryTerm">
4945                <a name="term_ReplaceWS">Replace Whitespace Policy</a>
4946             </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32).</p>
4947          <p>
4948             <span class="glossaryTerm">
4949                <a name="term_Sequence">Sequence Model Group</a>
4950             </span>Child elements and model groups must be provided <em>in the specified order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-sequence"
4951                href="http://www.w3.org/TR/xmlschema-1/#element-sequence">http://www.w3.org/TR/xmlschema-1/#element-sequence</a>.</p>
4952          <p>
4953             <span class="glossaryTerm">
4954                <a name="term_SubGroup">Substitution Group</a>
4955             </span>Elements that are <em>members</em> of a substitution group can be used wherever the <em>head</em> element of the substitution group is referenced.</p>
4956          <p>
4957             <span class="glossaryTerm">
4958                <a name="term_ElemFinal">Substitution Group Exclusions</a>
4959             </span>(Applies to element declarations). Prohibits element declarations from nominating themselves as being able to substitute a given element declaration, if they have types that are derived from the original element's type using the specified derivation methods.</p>
4960          <p>
4961             <span class="glossaryTerm">
4962                <a name="term_TargetNS">Target Namespace</a>
4963             </span>The target namespace identifies the namespace that components in this schema belongs to. If no target namespace is provided, then the schema components do not belong to any namespace.</p>
4964          <p>
4965             <span class="glossaryTerm">
4966                <a name="term_Unique">Uniqueness Constraint</a>
4967             </span>Ensures uniqueness of an element/attribute value, or a combination of values, within a specified scope. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
4968                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
4969          <div style="text-align: right; clear: both;">
4970             <a href="#top">top</a>
4971          </div>
4972          <hr/>
4973       </div>
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4980    </body>
4981 </html>