3 PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
4 <html xmlns="http://www.w3.org/1999/xhtml">
6 <title>phyloXML 0.90 - phyloxml.xsd</title>
7 <meta http-equiv="Content-Type" content="text/xml; charset=UTF-8"/>
8 <style type="text/css">
9 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
10 /* More-configurable styles */
12 /******** General ********/
17 background-color: White;
18 font-family: Arial, sans-serif;
22 /* Horizontal rules */
30 border-bottom: 1px #ccc solid;
34 /* Main section headers */
39 /* Sub-section headers */
45 /* Table displaying the properties of the schema components or the
46 schema document itself */
47 table.properties th, table.properties th a {
49 background-color: #F99; /* Pink */
52 background-color: #eee; /* Gray */
59 /********* Documentation style *************/
63 background-color: #EEEEFF;
64 border: 1px solid #DDDDFF;
71 /******** Table of Contents Section ********/
73 /* Controls for switching between printing and viewing modes */
75 color: #963; /* Orange-brown */
77 /* Controls that can collapse or expand all XML Instance
78 Representation and Schema Component Representation boxes */
80 border: 2px solid #999;
84 /******** Schema Document Properties Section ********/
86 /* Table displaying the namespaces declared in the schema */
88 background-color: #ccc;
91 background-color: #eee;
93 /* Target namespace of the schema */
100 /******** Schema Components' Sections ********/
102 /* Name of schema component */
104 color: #F93; /* Orange */
107 /* Hierarchy table */
109 border: 2px solid #999; /* Gray */
112 /* XML Instance Representation table */
113 div.sample div.contents {
114 border: 1px dashed black;
118 /* Schema Component Representation table */
119 div.schemaComponent div.contents {
120 border: 2px black solid;
124 /******** Glossary Section ********/
128 color: #036; /* Blue */
132 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
133 /* Printer-version styles */
137 /* Ensures that controls are hidden when printing */
138 div#printerControls {
159 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
162 /******** General ********/
164 /* Unordered lists */
188 /* Table displaying the properties of the schema components or the
189 schema document itself */
193 table.properties th {
196 /* Boxes that can make its content appear and disappear*/
201 div.box span.caption {
204 /* Button to open and close the box */
205 div.box input.control {
209 vertical-align: middle;
213 div.box div.contents {
218 /******** Table of Contents Section ********/
220 /* Controls for switching between printing and viewing modes */
221 div#printerControls {
227 /* Controls that can collapse or expand all XML Instance
228 Representation and Schema Component Representation boxes */
235 /******** Schema Document Properties Section ********/
237 /* Table displaying the namespaces declared in the schema */
238 table.namespaces th {
240 table.namespaces td {
242 /* Target namespace of the schema */
247 /******** Schema Components' Sections ********/
249 /* Name of schema component */
253 /* Hierarchy table */
262 table.hierarchy th, table.hierarchy td {
266 /* XML Instance Representation table */
270 div.sample div.contents {
272 font-family: Courier New, sans-serif;
275 /* Normal elements and attributes */
276 div.sample div.contents, div.sample div.contents a {
280 div.sample div.contents .group, div.sample div.contents .group a {
281 color: #999; /* Light gray */
283 /* Type Information */
284 div.sample div.contents .type, div.sample div.contents .type a {
285 color: #999; /* Light gray */
287 /* Occurrence Information */
288 div.sample div.contents .occurs, div.sample div.contents .occurs a {
289 color: #999; /* Light gray */
292 div.sample div.contents .fixed {
293 color: #063; /* Green */
296 /* Simple type constraints */
297 div.sample div.contents .constraint, div.sample div.contents .constraint a {
298 color: #999; /* Light gray */
300 /* Elements and attributes inherited from base type */
301 div.sample div.contents .inherited, div.sample div.contents .inherited a {
302 color: #666; /* Dark gray */
304 /* Elements and attributes added to or changed from base type */
305 div.sample div.contents .newFields {
308 /* Other type of information */
309 div.sample div.contents .other, div.sample div.contents .other a {
310 color: #369; /* Blue */
313 /* Link to open up window displaying documentation */
314 div.sample div.contents a.documentation {
315 text-decoration: none;
322 background-color: #FFD;
325 /* Invert colors when hovering over link to open up window
326 displaying documentation */
327 div.sample div.contents a.documentation:hover {
329 background-color: #069;
332 /* Schema Component Representation table */
333 div.schemaComponent {
336 div.schemaComponent div.contents {
337 font-family: Courier New, sans-serif;
341 /* Syntax characters */
342 div.schemaComponent div.contents {
343 color: #00f; /* blue */
345 /* Element and attribute tags */
346 div.schemaComponent div.contents .scTag {
347 color: #933; /* maroon */
349 /* Element and attribute content */
350 div.schemaComponent div.contents .scContent, div.schemaComponent div.contents .scContent a {
355 div.schemaComponent div.contents .comment {
356 color: #999; /* Light gray */
359 /******** Legend Section ********/
361 div#legend table, div#legend div {
364 div#legend div.hint {
365 color: #999; /* Light gray */
372 /******** Glossary Section ********/
379 /********* Details *************/
381 color: #666; /* Light gray */
385 color: #666; /* Light gray */
386 text-decoration:none;
389 /******** Footer ********/
395 <script type="text/javascript">
397 /* IDs of XML Instance Representation boxes */
398 var xiBoxes = new Array('h270234806_xibox', 'h155831896_xibox', 'h535307528_xibox', 'h-1124608460_xibox', 'h888650454_xibox', 'h712147427_xibox', 'h518348337_xibox', 'h-1794244794_xibox', 'h-213750342_xibox', 'h259010940_xibox', 'h-1389097534_xibox', 'h-1122459339_xibox', 'h1358103055_xibox', 'h-1514309680_xibox', 'h1535743041_xibox', 'h917087604_xibox', 'h-494260170_xibox', 'h890448016_xibox', 'h-1670259669_xibox', 'h-676012345_xibox', 'h-993584945_xibox', 'h-853091232_xibox', 'h-979596407_xibox', 'h-1691165380_xibox', 'h-802965662_xibox', 'h519911868_xibox', 'h192331856_xibox', 'h-1482113798_xibox', 'h577349652_xibox');
399 /* IDs of diagram boxes */
400 var diagramBoxes = new Array('h270234806_diagram', 'h155831896_diagram', 'h535307528_diagram', 'h-1124608460_diagram', 'h888650454_diagram', 'h712147427_diagram', 'h518348337_diagram', 'h-1794244794_diagram', 'h-213750342_diagram', 'h259010940_diagram', 'h-1389097534_diagram', 'h-1122459339_diagram', 'h1358103055_diagram', 'h-1514309680_diagram', 'h1535743041_diagram', 'h917087604_diagram', 'h-494260170_diagram', 'h890448016_diagram', 'h-1670259669_diagram', 'h-676012345_diagram', 'h-993584945_diagram', 'h-853091232_diagram', 'h-979596407_diagram', 'h-1691165380_diagram', 'h-802965662_diagram', 'h519911868_diagram', 'h192331856_diagram', 'h-1482113798_diagram', 'h577349652_diagram');
401 /* IDs of logical diagram boxes */
402 var logicalDiagramBoxes = new Array('h270234806_logicalDiagram');
403 /* IDs of Schema Component Representation boxes */
404 var scBoxes = new Array('schema_scbox', 'h270234806_scbox', 'h155831896_scbox', 'h535307528_scbox', 'h-1124608460_scbox', 'h888650454_scbox', 'h712147427_scbox', 'h518348337_scbox', 'h-1794244794_scbox', 'h-213750342_scbox', 'h259010940_scbox', 'h-1389097534_scbox', 'h-1122459339_scbox', 'h1358103055_scbox', 'h-1514309680_scbox', 'h1535743041_scbox', 'h917087604_scbox', 'h-494260170_scbox', 'h890448016_scbox', 'h-1670259669_scbox', 'h-676012345_scbox', 'h-993584945_scbox', 'h-853091232_scbox', 'h-979596407_scbox', 'h-1691165380_scbox', 'h-802965662_scbox', 'h519911868_scbox', 'h192331856_scbox', 'h-1482113798_scbox', 'h577349652_scbox');
407 * Can get the ID of the button controlling
408 * a collapseable box by concatenating
409 * this string onto the ID of the box itself.
411 var B_SFIX = "_button";
415 * Returns an element in the current HTML document.
417 * @param elementID Identifier of HTML element
418 * @return HTML element object
420 function getElementObject(elementID) {
422 if (document.getElementById) {
423 elemObj = document.getElementById(elementID);
429 * Closes a collapseable box.
431 * @param boxObj Collapseable box
432 * @param buttonObj Button controlling box
434 function closeBox(boxObj, buttonObj) {
435 if (boxObj == null || buttonObj == null) {
436 // Box or button not found
438 // Change 'display' CSS property of box
439 boxObj.style.display="none";
441 // Change text of button
442 if (boxObj.style.display=="none") {
443 buttonObj.value=" + ";
449 * Opens a collapseable box.
451 * @param boxObj Collapseable box
452 * @param buttonObj Button controlling box
454 function openBox(boxObj, buttonObj) {
455 if (boxObj == null || buttonObj == null) {
456 // Box or button not found
458 // Change 'display' CSS property of box
459 boxObj.style.display="block";
461 // Change text of button
462 if (boxObj.style.display=="block") {
463 buttonObj.value=" - ";
469 * Sets the state of a collapseable box.
471 * @param boxID Identifier of box
472 * @param open If true, box is "opened",
473 * Otherwise, box is "closed".
475 function setState(boxID, open) {
476 var boxObj = getElementObject(boxID);
477 var buttonObj = getElementObject(boxID+B_SFIX);
478 if (boxObj == null || buttonObj == null) {
479 // Box or button not found
481 openBox(boxObj, buttonObj);
482 // Make button visible
483 buttonObj.style.display="inline";
485 closeBox(boxObj, buttonObj);
486 // Make button visible
487 buttonObj.style.display="inline";
492 * Switches the state of a collapseable box, e.g.
493 * if it's opened, it'll be closed, and vice versa.
495 * @param boxID Identifier of box
497 function switchState(boxID) {
498 var boxObj = getElementObject(boxID);
499 var buttonObj = getElementObject(boxID+B_SFIX);
500 if (boxObj == null || buttonObj == null) {
501 // Box or button not found
502 } else if (boxObj.style.display=="none") {
503 // Box is closed, so open it
504 openBox(boxObj, buttonObj);
505 } else if (boxObj.style.display=="block") {
506 // Box is opened, so close it
507 closeBox(boxObj, buttonObj);
512 * Closes all boxes in a given list.
514 * @param boxList Array of box IDs
516 function collapseAll(boxList) {
518 for (idx = 0; idx < boxList.length; idx++) {
519 var boxObj = getElementObject(boxList[idx]);
520 var buttonObj = getElementObject(boxList[idx]+B_SFIX);
521 closeBox(boxObj, buttonObj);
526 * Open all boxes in a given list.
528 * @param boxList Array of box IDs
530 function expandAll(boxList) {
532 for (idx = 0; idx < boxList.length; idx++) {
533 var boxObj = getElementObject(boxList[idx]);
534 var buttonObj = getElementObject(boxList[idx]+B_SFIX);
535 openBox(boxObj, buttonObj);
540 * Makes all the control buttons of boxes appear.
542 * @param boxList Array of box IDs
544 function viewControlButtons(boxList) {
546 for (idx = 0; idx < boxList.length; idx++) {
547 buttonObj = getElementObject(boxList[idx]+B_SFIX);
548 if (buttonObj != null) {
549 buttonObj.style.display = "inline";
555 * Makes all the control buttons of boxes disappear.
557 * @param boxList Array of box IDs
559 function hideControlButtons(boxList) {
561 for (idx = 0; idx < boxList.length; idx++) {
562 buttonObj = getElementObject(boxList[idx]+B_SFIX);
563 if (buttonObj != null) {
564 buttonObj.style.display = "none";
570 * Sets the page for either printing mode
571 * or viewing mode. In printing mode, the page
572 * is made to be more readable when printing it out.
573 * In viewing mode, the page is more browsable.
575 * @param isPrinterVersion If true, display in
576 * printing mode; otherwise,
579 function displayMode(isPrinterVersion) {
581 if (isPrinterVersion) {
582 // Hide global control buttons
583 obj = getElementObject("globalControls");
585 obj.style.visibility = "hidden";
588 obj = getElementObject("legend");
590 obj.style.display = "none";
592 obj = getElementObject("legendTOC");
594 obj.style.display = "none";
597 obj = getElementObject("glossary");
599 obj.style.display = "none";
601 obj = getElementObject("glossaryTOC");
603 obj.style.display = "none";
606 // Expand all diagrams
607 expandAll(diagramBoxes);
608 // Expand all logical diagrams
609 expandAll(logicalDiagramBoxes);
610 // Expand all XML Instance Representation tables
612 // Expand all Schema Component Representation tables
615 // Hide Control buttons
616 hideControlButtons(diagramBoxes);
617 hideControlButtons(logicalDiagramBoxes);
618 hideControlButtons(xiBoxes);
619 hideControlButtons(scBoxes);
621 // View global control buttons
622 obj = getElementObject("globalControls");
624 obj.style.visibility = "visible";
627 obj = getElementObject("legend");
629 obj.style.display = "block";
631 obj = getElementObject("legendTOC");
633 obj.style.display = "block";
636 obj = getElementObject("glossary");
638 obj.style.display = "block";
640 obj = getElementObject("glossaryTOC");
642 obj.style.display = "block";
645 // Expand all diagram boxes
646 expandAll(diagramBoxes);
647 // Collapse all logical diagram boxes.
648 collapseAll(logicalDiagramBoxes);
649 // Expand all XML Instance Representation tables
651 // Collapse all Schema Component Representation tables
652 collapseAll(scBoxes);
654 // View Control buttons
655 viewControlButtons(diagramBoxes);
656 viewControlButtons(logicalDiagramBoxes);
657 viewControlButtons(xiBoxes);
658 viewControlButtons(scBoxes);
666 <script type="text/javascript">
671 * Counter of documentation windows
672 * Used to give each window a unique name
677 * Opens up a window displaying the documentation
678 * of a schema component in the XML Instance
679 * Representation table.
681 * @param compDesc Description of schema component
682 * @param compName Name of schema component
683 * @param docTextArray Array containing the paragraphs
684 * of the new document
686 function viewDocumentation(compDesc, compName, docTextArray) {
692 /* Generate content */
693 var actualText = "<html>";
694 actualText += "<head><title>";
695 actualText += compDesc;
696 if (compName != '') {
697 actualText += ": " + compName;
699 actualText += "</title></head>";
700 actualText += "<body bgcolor=\"#FFFFEE\">";
702 actualText += "<p style=\"font-family: Arial, sans-serif; font-size: 12pt; font-weight: bold; letter-spacing:1px;\">";
703 actualText += compDesc;
704 if (compName != '') {
705 actualText += ": <span style=\"color:#006699\">" + compName + "</span>";
707 actualText += "</p>";
710 for (idx = 0; idx < docTextArray.length; idx++) {
711 actualText += "<p style=\"font-family: Arial, sans-serif; font-size: 10pt;\">" + docTextArray[idx] + "</p>";
713 // Link to close window
714 actualText += "<a href=\"javascript:void(0)\" onclick=\"window.close();\" style=\"font-family: Arial, sans-serif; font-size: 8pt;\">Close</a>";
715 actualText += "</body></html>";
719 var docWindow = window.open("", "documentation"+windowCount, "toolbar=no,location=no,status=no,menubar=no,scrollbars=yes,resizable,alwaysRaised,dependent,titlebar=no,width="+width+",height="+height+",screenX="+locX+",left="+locX+",screenY="+locY+",top="+locY);
720 docWindow.document.write(actualText);
728 <a name="top">phyloXML 0.90</a>
730 <div style="float: right;">
731 <div id="printerControls" style="display:none;">
732 <input type="checkbox" onclick="displayMode(this.checked)"/>Printer-friendly Version</div>
733 <script type="text/javascript">
736 var pc = getElementObject("printerControls");
738 pc.style.display="block";
743 <div id="globalControls" style="display:none">
744 <strong>Logical Diagram:</strong>
746 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(logicalDiagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(logicalDiagramBoxes)">Collapse All</a> ]</span>
749 <strong>XML Instance Representation:</strong>
751 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(xiBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(xiBoxes)">Collapse All</a> ]</span>
754 <strong>Diagram:</strong>
756 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(diagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(diagramBoxes)">Collapse All</a> ]</span>
759 <strong>Schema Component Representation:</strong>
761 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(scBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(scBoxes)">Collapse All</a> ]</span>
763 <script type="text/javascript">
766 var gc = getElementObject("globalControls");
768 gc.style.display="block";
774 <h2>Table of Contents</h2>
777 <a href="#SchemaProperties">Schema Document Properties</a>
780 <a href="#SchemaDeclarations">Global Declarations</a>
783 <a href="#h270234806">Element: <strong>phyloxml</strong>
789 <a href="#SchemaDefinitions">Global Definitions</a>
792 <a href="#h917087604">Complex Type: <strong>Annotation</strong>
796 <a href="#h1535743041">Complex Type: <strong>BinaryCharacterList</strong>
800 <a href="#h-1514309680">Complex Type: <strong>BinaryCharacters</strong>
804 <a href="#h-1691165380">Complex Type: <strong>BranchColor</strong>
808 <a href="#h-1124608460">Complex Type: <strong>Clade</strong>
812 <a href="#h192331856">Complex Type: <strong>CladeRelation</strong>
816 <a href="#h-993584945">Complex Type: <strong>Confidence</strong>
820 <a href="#h-494260170">Complex Type: <strong>Custom</strong>
824 <a href="#h259010940">Complex Type: <strong>DomainArchitecture</strong>
828 <a href="#h-1122459339">Complex Type: <strong>Event</strong>
832 <a href="#h-853091232">Complex Type: <strong>Id</strong>
836 <a href="#h535307528">Complex Type: <strong>Phylogeny</strong>
840 <a href="#h155831896">Complex Type: <strong>Phyloxml</strong>
844 <a href="#h-1389097534">Complex Type: <strong>ProteinDomain</strong>
848 <a href="#h-1794244794">Complex Type: <strong>Sequence</strong>
852 <a href="#h-802965662">Complex Type: <strong>SequenceRelation</strong>
856 <a href="#h888650454">Complex Type: <strong>Taxonomy</strong>
860 <a href="#h-676012345">Complex Type: <strong>Uri</strong>
864 <a href="#h-1670259669">Simple Type: <strong>CustomProperty</strong>
868 <a href="#h890448016">Simple Type: <strong>CustomType</strong>
872 <a href="#h-979596407">Simple Type: <strong>Distribution</strong>
876 <a href="#h1358103055">Simple Type: <strong>EventType</strong>
880 <a href="#h-213750342">Simple Type: <strong>MolSeq</strong>
884 <a href="#h518348337">Simple Type: <strong>Rank</strong>
888 <a href="#h519911868">Simple Type: <strong>SequenceRelationType</strong>
892 <a href="#h712147427">Simple Type: <strong>TaxonomyCode</strong>
896 <a href="#h577349652">Simple Type: <strong>id_ref</strong>
900 <a href="#h-1482113798">Simple Type: <strong>id_source</strong>
906 <ul id="legendTOC" style="margin-top: 0em">
908 <a href="#Legend">Legend</a>
911 <ul id="glossaryTOC" style="margin-top: 0em">
913 <a href="#Glossary">Glossary</a>
916 <div style="text-align: right; clear: both;">
917 <a href="#top">top</a>
921 <a name="SchemaProperties">Schema Document Properties</a>
923 <table class="properties">
926 <a title="Look up 'Target Namespace' in glossary"
927 href="phyloxml.xsd.html#term_TargetNS">Target Namespace</a>
930 <span class="targetNS">http://www.phyloxml.org</span>
934 <th>Element and Attribute Namespaces</th>
937 <li>Global element and attribute declarations belong to this schema's target namespace.</li>
938 <li>By default, local element declarations belong to this schema's target namespace.</li>
939 <li>By default, local attribute declarations have no namespace.</li>
944 <h3>Declared Namespaces</h3>
945 <table class="namespaces">
952 <a name="ns_xml">xml</a>
954 <td>http://www.w3.org/XML/1998/namespace</td>
958 <a name="ns_phy">phy</a>
961 <span class="targetNS">http://www.phyloxml.org</span>
966 <a name="ns_xs">xs</a>
968 <td>http://www.w3.org/2001/XMLSchema</td>
971 <div class="schemaComponent box">
973 <input type="button" id="schema_scbox_button" class="control"
974 onclick="switchState('schema_scbox'); return false;"
975 style="display: none"/>
976 <span class="caption">Schema Component Representation</span>
978 <div id="schema_scbox" class="contents">
979 <div style="margin-left: 0em"><<span class="scTag">xs:schema</span>
980 <span class="scTag">targetNamespace</span>="<span class="scContent">http://www.phyloxml.org</span>" <span class="scTag">elementFormDefault</span>="<span class="scContent">qualified</span>" <span class="scTag">attributeFormDefault</span>="<span class="scContent">unqualified</span>"><div class="scContent" style="margin-left: 1.5em">...</div></<span class="scTag">xs:schema</span>></div>
982 <script type="text/javascript">
984 setState('schema_scbox', false);
988 <div style="text-align: right; clear: both;">
989 <a href="#top">top</a>
993 <a name="SchemaDeclarations">Global Declarations</a>
995 <h3>Element: <a name="h270234806" class="name">phyloxml</a>
997 <table class="properties">
1006 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phyloxml" type definition." href="#h155831896">Phyloxml</a>
1012 <a title="Look up 'Nillable' in glossary" href="phyloxml.xsd.html#term_Nillable">Nillable</a>
1018 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1023 <div class="sample box">
1025 <input type="button" id="h270234806_logicalDiagram_button" class="control"
1026 onclick="switchState('h270234806_logicalDiagram'); return false;"
1027 style="display: none"/>
1028 <span class="caption">Logical Diagram</span>
1030 <div id="h270234806_logicalDiagram" class="contents">
1031 <img usemap="#h1900732667" src="schemaDiagrams/h1900732667.png"/>
1033 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1900732667.map--><map name="h1900732667">
1036 <script type="text/javascript">
1038 setState('h270234806_logicalDiagram', false);
1042 <div class="sample box">
1044 <input type="button" id="h270234806_xibox_button" class="control"
1045 onclick="switchState('h270234806_xibox'); return false;"
1046 style="display: none"/>
1047 <span class="caption">XML Instance Representation</span>
1049 <div id="h270234806_xibox" class="contents">
1050 <div style="margin-left: 0em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml> <br/>
1051 <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
1052 <span class="occurs">[1..*]</span>
1055 <div style="margin-left: 3em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="type">
1056 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phylogeny" type definition." href="#h535307528">Phylogeny</a>
1057 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="occurs">[0..*]</span>
1059 <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1061 <span class="group" style="margin-left: 1.5em">End Sequence</span>
1062 <br/></<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml></div>
1064 <script type="text/javascript">
1066 setState('h270234806_xibox', true);
1070 <div class="sample box">
1072 <input type="button" id="h270234806_diagram_button" class="control"
1073 onclick="switchState('h270234806_diagram'); return false;"
1074 style="display: none"/>
1075 <span class="caption">Diagram</span>
1077 <div id="h270234806_diagram" class="contents">
1078 <img usemap="#h482833585" src="schemaDiagrams/h482833585.png"/>
1080 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h482833585.map--><map name="h482833585">
1081 <area shape="rect" alt="h535307528" coords="344,10,463,50"
1082 href="phyloxml.xsd.html#h535307528"/>
1086 <script type="text/javascript">
1088 setState('h270234806_diagram', true);
1092 <div class="schemaComponent box">
1094 <input type="button" id="h270234806_scbox_button" class="control"
1095 onclick="switchState('h270234806_scbox'); return false;"
1096 style="display: none"/>
1097 <span class="caption">Schema Component Representation</span>
1099 <div id="h270234806_scbox" class="contents">
1100 <div style="margin-left: 0em"><<span class="scTag">xs:element</span>
1101 <span class="scTag">name</span>="<span class="scContent">phyloxml</span>" <span class="scTag">type</span>="<span class="scContent">
1103 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phyloxml" type definition." href="#h155831896">Phyloxml</a>
1107 <script type="text/javascript">
1109 setState('h270234806_scbox', false);
1113 <div style="text-align: right; clear: both;">
1114 <a href="#top">top</a>
1118 <a name="SchemaDefinitions">Global Definitions</a>
1120 <h3>Complex Type: <a name="h917087604" class="name">Annotation</a>
1122 <table class="hierarchy">
1124 <th>Super-types:</th>
1132 <table class="properties">
1138 <th>Used by (from the same schema document)</th>
1139 <td>Complex Type <b>
1140 <a href="#h-1794244794">Sequence</a>
1146 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1151 <div class="sample box">
1153 <input type="button" id="h917087604_xibox_button" class="control"
1154 onclick="switchState('h917087604_xibox'); return false;"
1155 style="display: none"/>
1156 <span class="caption">XML Instance Representation</span>
1158 <div id="h917087604_xibox" class="contents">
1159 <div style="margin-left: 0em"><...<br/>
1160 <span style="margin-left: 0.5em"> type="<span class="type">
1161 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1162 <span class="occurs">[0..1]</span>"</span>> <br/>
1163 <span class="other" style="margin-left: 1.5em"><!-- Mixed content --></span>
1165 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="type">
1166 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
1167 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="occurs">[0..1]</span>
1169 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
1170 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1171 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
1173 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="type">
1174 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
1175 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="occurs">[0..1]</span>
1176 </div></...></div>
1178 <script type="text/javascript">
1180 setState('h917087604_xibox', true);
1184 <div class="sample box">
1186 <input type="button" id="h917087604_diagram_button" class="control"
1187 onclick="switchState('h917087604_diagram'); return false;"
1188 style="display: none"/>
1189 <span class="caption">Diagram</span>
1191 <div id="h917087604_diagram" class="contents">
1192 <img usemap="#h624412339" src="schemaDiagrams/h624412339.png"/>
1194 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h624412339.map--><map name="h624412339">
1195 <area shape="rect" alt="h-853091232" coords="236,0,312,40"
1196 href="phyloxml.xsd.html#h-853091232"/>
1198 <area shape="rect" alt="h-993584945" coords="236,50,362,90"
1199 href="phyloxml.xsd.html#h-993584945"/>
1201 <area shape="rect" alt="h-676012345" coords="236,100,313,140"
1202 href="phyloxml.xsd.html#h-676012345"/>
1206 <script type="text/javascript">
1208 setState('h917087604_diagram', true);
1212 <div class="schemaComponent box">
1214 <input type="button" id="h917087604_scbox_button" class="control"
1215 onclick="switchState('h917087604_scbox'); return false;"
1216 style="display: none"/>
1217 <span class="caption">Schema Component Representation</span>
1219 <div id="h917087604_scbox" class="contents">
1220 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1221 <span class="scTag">name</span>="<span class="scContent">Annotation</span>" <span class="scTag">mixed</span>="<span class="scContent">true</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1222 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
1224 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
1226 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1227 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1228 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1230 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1232 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1233 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1234 <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
1236 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
1238 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
1239 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1240 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1242 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1243 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
1245 <script type="text/javascript">
1247 setState('h917087604_scbox', false);
1251 <div style="text-align: right; clear: both;">
1252 <a href="#top">top</a>
1255 <h3>Complex Type: <a name="h1535743041" class="name">BinaryCharacterList</a>
1257 <table class="hierarchy">
1259 <th>Super-types:</th>
1267 <table class="properties">
1270 <td>BinaryCharacterList</td>
1273 <th>Used by (from the same schema document)</th>
1274 <td>Complex Type <b>
1275 <a href="#h-1514309680">BinaryCharacters</a>
1276 </b>, Complex Type <b>
1277 <a href="#h-1514309680">BinaryCharacters</a>
1278 </b>, Complex Type <b>
1279 <a href="#h-1514309680">BinaryCharacters</a>
1280 </b>, Complex Type <b>
1281 <a href="#h-1514309680">BinaryCharacters</a>
1287 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1292 <div class="sample box">
1294 <input type="button" id="h1535743041_xibox_button" class="control"
1295 onclick="switchState('h1535743041_xibox'); return false;"
1296 style="display: none"/>
1297 <span class="caption">XML Instance Representation</span>
1299 <div id="h1535743041_xibox" class="contents">
1300 <div style="margin-left: 0em"><...> <br/>
1301 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc> <span class="type">
1302 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc> <span class="occurs">[1..*]</span>
1303 </div></...></div>
1305 <script type="text/javascript">
1307 setState('h1535743041_xibox', true);
1311 <div class="sample box">
1313 <input type="button" id="h1535743041_diagram_button" class="control"
1314 onclick="switchState('h1535743041_diagram'); return false;"
1315 style="display: none"/>
1316 <span class="caption">Diagram</span>
1318 <div id="h1535743041_diagram" class="contents">
1319 <img usemap="#h508496390" src="schemaDiagrams/h508496390.png"/>
1321 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h508496390.map--><map name="h508496390">
1324 <script type="text/javascript">
1326 setState('h1535743041_diagram', true);
1330 <div class="schemaComponent box">
1332 <input type="button" id="h1535743041_scbox_button" class="control"
1333 onclick="switchState('h1535743041_scbox'); return false;"
1334 style="display: none"/>
1335 <span class="caption">Schema Component Representation</span>
1337 <div id="h1535743041_scbox" class="contents">
1338 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1339 <span class="scTag">name</span>="<span class="scContent">BinaryCharacterList</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1340 <span class="scTag">name</span>="<span class="scContent">bc</span>" <span class="scTag">type</span>="<span class="scContent">
1342 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1343 </span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
1345 <script type="text/javascript">
1347 setState('h1535743041_scbox', false);
1351 <div style="text-align: right; clear: both;">
1352 <a href="#top">top</a>
1355 <h3>Complex Type: <a name="h-1514309680" class="name">BinaryCharacters</a>
1357 <table class="hierarchy">
1359 <th>Super-types:</th>
1367 <table class="properties">
1370 <td>BinaryCharacters</td>
1373 <th>Used by (from the same schema document)</th>
1374 <td>Complex Type <b>
1375 <a href="#h-1124608460">Clade</a>
1381 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1386 <div class="sample box">
1388 <input type="button" id="h-1514309680_xibox_button" class="control"
1389 onclick="switchState('h-1514309680_xibox'); return false;"
1390 style="display: none"/>
1391 <span class="caption">XML Instance Representation</span>
1393 <div id="h-1514309680_xibox" class="contents">
1394 <div style="margin-left: 0em"><...<br/>
1395 <span style="margin-left: 0.5em"> type="<span class="type">
1396 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1397 <span class="occurs">[0..1]</span>"</span>
1399 <span style="margin-left: 0.5em"> gained_count="<span class="type">
1400 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1401 <span class="occurs">[0..1]</span>"</span>
1403 <span style="margin-left: 0.5em"> lost_count="<span class="type">
1404 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1405 <span class="occurs">[0..1]</span>"</span>
1407 <span style="margin-left: 0.5em"> present_count="<span class="type">
1408 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1409 <span class="occurs">[0..1]</span>"</span>
1411 <span style="margin-left: 0.5em"> absent_count="<span class="type">
1412 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1413 <span class="occurs">[0..1]</span>"</span>> <br/>
1414 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained> <span class="type">
1415 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1416 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained> <span class="occurs">[0..1]</span>
1418 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost> <span class="type">
1419 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1420 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost> <span class="occurs">[0..1]</span>
1422 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present> <span class="type">
1423 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1424 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present> <span class="occurs">[0..1]</span>
1426 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent> <span class="type">
1427 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1428 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent> <span class="occurs">[0..1]</span>
1429 </div></...></div>
1431 <script type="text/javascript">
1433 setState('h-1514309680_xibox', true);
1437 <div class="sample box">
1439 <input type="button" id="h-1514309680_diagram_button" class="control"
1440 onclick="switchState('h-1514309680_diagram'); return false;"
1441 style="display: none"/>
1442 <span class="caption">Diagram</span>
1444 <div id="h-1514309680_diagram" class="contents">
1445 <img usemap="#h-81115689" src="schemaDiagrams/h-81115689.png"/>
1447 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-81115689.map--><map name="h-81115689">
1448 <area shape="rect" alt="h1535743041" coords="278,0,376,40"
1449 href="phyloxml.xsd.html#h1535743041"/>
1451 <area shape="rect" alt="h1535743041" coords="278,50,362,90"
1452 href="phyloxml.xsd.html#h1535743041"/>
1454 <area shape="rect" alt="h1535743041" coords="278,100,383,140"
1455 href="phyloxml.xsd.html#h1535743041"/>
1457 <area shape="rect" alt="h1535743041" coords="278,150,376,190"
1458 href="phyloxml.xsd.html#h1535743041"/>
1462 <script type="text/javascript">
1464 setState('h-1514309680_diagram', true);
1468 <div class="schemaComponent box">
1470 <input type="button" id="h-1514309680_scbox_button" class="control"
1471 onclick="switchState('h-1514309680_scbox'); return false;"
1472 style="display: none"/>
1473 <span class="caption">Schema Component Representation</span>
1475 <div id="h-1514309680_scbox" class="contents">
1476 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1477 <span class="scTag">name</span>="<span class="scContent">BinaryCharacters</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1478 <span class="scTag">name</span>="<span class="scContent">gained</span>" <span class="scTag">type</span>="<span class="scContent">
1480 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1482 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1483 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1484 <span class="scTag">name</span>="<span class="scContent">lost</span>" <span class="scTag">type</span>="<span class="scContent">
1486 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1488 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1489 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1490 <span class="scTag">name</span>="<span class="scContent">present</span>" <span class="scTag">type</span>="<span class="scContent">
1492 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1494 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1495 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1496 <span class="scTag">name</span>="<span class="scContent">absent</span>" <span class="scTag">type</span>="<span class="scContent">
1498 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1500 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
1501 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1502 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1504 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1506 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1507 <span class="scTag">name</span>="<span class="scContent">gained_count</span>" <span class="scTag">type</span>="<span class="scContent">
1509 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1511 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1512 <span class="scTag">name</span>="<span class="scContent">lost_count</span>" <span class="scTag">type</span>="<span class="scContent">
1514 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1516 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1517 <span class="scTag">name</span>="<span class="scContent">present_count</span>" <span class="scTag">type</span>="<span class="scContent">
1519 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1521 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1522 <span class="scTag">name</span>="<span class="scContent">absent_count</span>" <span class="scTag">type</span>="<span class="scContent">
1524 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1525 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
1527 <script type="text/javascript">
1529 setState('h-1514309680_scbox', false);
1533 <div style="text-align: right; clear: both;">
1534 <a href="#top">top</a>
1537 <h3>Complex Type: <a name="h-1691165380" class="name">BranchColor</a>
1539 <table class="hierarchy">
1541 <th>Super-types:</th>
1549 <table class="properties">
1552 <td>BranchColor</td>
1555 <th>Used by (from the same schema document)</th>
1556 <td>Complex Type <b>
1557 <a href="#h-1124608460">Clade</a>
1563 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1568 <div class="sample box">
1570 <input type="button" id="h-1691165380_xibox_button" class="control"
1571 onclick="switchState('h-1691165380_xibox'); return false;"
1572 style="display: none"/>
1573 <span class="caption">XML Instance Representation</span>
1575 <div id="h-1691165380_xibox" class="contents">
1576 <div style="margin-left: 0em"><...> <br/>
1577 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red> <span class="type">
1578 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red> <span class="occurs">[1]</span>
1580 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green> <span class="type">
1581 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green> <span class="occurs">[1]</span>
1583 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue> <span class="type">
1584 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue> <span class="occurs">[1]</span>
1585 </div></...></div>
1587 <script type="text/javascript">
1589 setState('h-1691165380_xibox', true);
1593 <div class="sample box">
1595 <input type="button" id="h-1691165380_diagram_button" class="control"
1596 onclick="switchState('h-1691165380_diagram'); return false;"
1597 style="display: none"/>
1598 <span class="caption">Diagram</span>
1600 <div id="h-1691165380_diagram" class="contents">
1601 <img usemap="#h-203375637" src="schemaDiagrams/h-203375637.png"/>
1603 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-203375637.map--><map name="h-203375637">
1606 <script type="text/javascript">
1608 setState('h-1691165380_diagram', true);
1612 <div class="schemaComponent box">
1614 <input type="button" id="h-1691165380_scbox_button" class="control"
1615 onclick="switchState('h-1691165380_scbox'); return false;"
1616 style="display: none"/>
1617 <span class="caption">Schema Component Representation</span>
1619 <div id="h-1691165380_scbox" class="contents">
1620 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1621 <span class="scTag">name</span>="<span class="scContent">BranchColor</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1622 <span class="scTag">name</span>="<span class="scContent">red</span>" <span class="scTag">type</span>="<span class="scContent">
1624 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1626 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1627 <span class="scTag">name</span>="<span class="scContent">green</span>" <span class="scTag">type</span>="<span class="scContent">
1629 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1631 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1632 <span class="scTag">name</span>="<span class="scContent">blue</span>" <span class="scTag">type</span>="<span class="scContent">
1634 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1635 </span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
1637 <script type="text/javascript">
1639 setState('h-1691165380_scbox', false);
1643 <div style="text-align: right; clear: both;">
1644 <a href="#top">top</a>
1647 <h3>Complex Type: <a name="h-1124608460" class="name">Clade</a>
1649 <table class="hierarchy">
1651 <th>Super-types:</th>
1659 <table class="properties">
1665 <th>Used by (from the same schema document)</th>
1666 <td>Complex Type <b>
1667 <a href="#h535307528">Phylogeny</a>
1668 </b>, Complex Type <b>
1669 <a href="#h-1124608460">Clade</a>
1675 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1680 <div class="sample box">
1682 <input type="button" id="h-1124608460_xibox_button" class="control"
1683 onclick="switchState('h-1124608460_xibox'); return false;"
1684 style="display: none"/>
1685 <span class="caption">XML Instance Representation</span>
1687 <div id="h-1124608460_xibox" class="contents">
1688 <div style="margin-left: 0em"><...<br/>
1689 <span style="margin-left: 0.5em"> distance="<span class="type">
1690 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1691 <span class="occurs">[0..1]</span>"</span>
1693 <span style="margin-left: 0.5em"> id_source="<span class="type">
1694 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
1696 <span class="occurs">[0..1]</span>"</span>> <br/>
1697 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="type">
1698 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="occurs">[0..1]</span>
1700 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distance> <span class="type">
1701 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distance> <span class="occurs">[0..1]</span>
1703 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
1704 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1705 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..*]</span>
1707 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width> <span class="type">
1708 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width> <span class="occurs">[0..1]</span>
1710 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color> <span class="type">
1711 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BranchColor" type definition." href="#h-1691165380">BranchColor</a>
1712 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color> <span class="occurs">[0..1]</span>
1714 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id> <span class="type">
1715 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
1716 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id> <span class="occurs">[0..1]</span>
1718 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy> <span class="type">
1719 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Taxonomy" type definition." href="#h888650454">Taxonomy</a>
1720 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy> <span class="occurs">[0..*]</span>
1722 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence> <span class="type">
1723 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Sequence" type definition." href="#h-1794244794">Sequence</a>
1724 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence> <span class="occurs">[0..*]</span>
1726 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:event> <span class="type">
1727 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Event" type definition." href="#h-1122459339">Event</a>
1728 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:event> <span class="occurs">[0..1]</span>
1730 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters> <span class="type">
1731 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacters" type definition." href="#h-1514309680">BinaryCharacters</a>
1732 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters> <span class="occurs">[0..1]</span>
1734 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution> <span class="type">
1735 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution> <span class="occurs">[0..1]</span>
1737 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="type">
1738 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="occurs">[0..1]</span>
1740 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="type">
1741 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
1742 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="occurs">[0..*]</span>
1744 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom> <span class="type">
1745 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Custom" type definition." href="#h-494260170">Custom</a>
1746 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom> <span class="occurs">[0..1]</span>
1748 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1749 </div></...></div>
1751 <script type="text/javascript">
1753 setState('h-1124608460_xibox', true);
1757 <div class="sample box">
1759 <input type="button" id="h-1124608460_diagram_button" class="control"
1760 onclick="switchState('h-1124608460_diagram'); return false;"
1761 style="display: none"/>
1762 <span class="caption">Diagram</span>
1764 <div id="h-1124608460_diagram" class="contents">
1765 <img usemap="#h854822387" src="schemaDiagrams/h854822387.png"/>
1767 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h854822387.map--><map name="h854822387">
1768 <area shape="rect" alt="h-993584945" coords="201,100,327,140"
1769 href="phyloxml.xsd.html#h-993584945"/>
1771 <area shape="rect" alt="h-1691165380" coords="201,200,292,240"
1772 href="phyloxml.xsd.html#h-1691165380"/>
1774 <area shape="rect" alt="h-853091232" coords="201,250,306,290"
1775 href="phyloxml.xsd.html#h-853091232"/>
1777 <area shape="rect" alt="h888650454" coords="201,300,313,340"
1778 href="phyloxml.xsd.html#h888650454"/>
1780 <area shape="rect" alt="h-1794244794" coords="201,350,313,390"
1781 href="phyloxml.xsd.html#h-1794244794"/>
1783 <area shape="rect" alt="h-1122459339" coords="201,400,292,440"
1784 href="phyloxml.xsd.html#h-1122459339"/>
1786 <area shape="rect" alt="h-1514309680" coords="201,450,376,490"
1787 href="phyloxml.xsd.html#h-1514309680"/>
1789 <area shape="rect" alt="h-494260170" coords="201,650,299,690"
1790 href="phyloxml.xsd.html#h-494260170"/>
1792 <area shape="rect" alt="h-1482113798" coords="115,787,252,813"
1793 href="phyloxml.xsd.html#h-1482113798"/>
1797 <script type="text/javascript">
1799 setState('h-1124608460_diagram', true);
1803 <div class="schemaComponent box">
1805 <input type="button" id="h-1124608460_scbox_button" class="control"
1806 onclick="switchState('h-1124608460_scbox'); return false;"
1807 style="display: none"/>
1808 <span class="caption">Schema Component Representation</span>
1810 <div id="h-1124608460_scbox" class="contents">
1811 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1812 <span class="scTag">name</span>="<span class="scContent">Clade</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1813 <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
1815 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1816 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1817 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1818 <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
1820 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1821 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1822 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1823 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1825 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1827 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
1828 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1829 <span class="scTag">name</span>="<span class="scContent">width</span>" <span class="scTag">type</span>="<span class="scContent">
1831 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1832 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1833 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1834 <span class="scTag">name</span>="<span class="scContent">color</span>" <span class="scTag">type</span>="<span class="scContent">
1836 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BranchColor" type definition." href="#h-1691165380">BranchColor</a>
1838 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1839 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1840 <span class="scTag">name</span>="<span class="scContent">node_id</span>" <span class="scTag">type</span>="<span class="scContent">
1842 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
1844 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1845 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1846 <span class="scTag">name</span>="<span class="scContent">taxonomy</span>" <span class="scTag">type</span>="<span class="scContent">
1848 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Taxonomy" type definition." href="#h888650454">Taxonomy</a>
1850 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
1851 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1852 <span class="scTag">name</span>="<span class="scContent">sequence</span>" <span class="scTag">type</span>="<span class="scContent">
1854 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Sequence" type definition." href="#h-1794244794">Sequence</a>
1856 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
1857 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1858 <span class="scTag">name</span>="<span class="scContent">event</span>" <span class="scTag">type</span>="<span class="scContent">
1860 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Event" type definition." href="#h-1122459339">Event</a>
1862 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1863 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1864 <span class="scTag">name</span>="<span class="scContent">binary_characters</span>" <span class="scTag">type</span>="<span class="scContent">
1866 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacters" type definition." href="#h-1514309680">BinaryCharacters</a>
1868 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1869 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1870 <span class="scTag">name</span>="<span class="scContent">distribution</span>" <span class="scTag">type</span>="<span class="scContent">
1872 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1873 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1874 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1875 <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
1877 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1878 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1879 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1880 <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
1882 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
1884 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
1885 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1886 <span class="scTag">name</span>="<span class="scContent">custom</span>" <span class="scTag">type</span>="<span class="scContent">
1888 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Custom" type definition." href="#h-494260170">Custom</a>
1890 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1891 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
1892 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
1893 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1894 <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
1896 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1898 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1899 <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
1901 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
1903 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
1905 <script type="text/javascript">
1907 setState('h-1124608460_scbox', false);
1911 <div style="text-align: right; clear: both;">
1912 <a href="#top">top</a>
1915 <h3>Complex Type: <a name="h192331856" class="name">CladeRelation</a>
1917 <table class="hierarchy">
1919 <th>Super-types:</th>
1927 <table class="properties">
1930 <td>CladeRelation</td>
1933 <th>Used by (from the same schema document)</th>
1934 <td>Complex Type <b>
1935 <a href="#h535307528">Phylogeny</a>
1941 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1946 <div class="sample box">
1948 <input type="button" id="h192331856_xibox_button" class="control"
1949 onclick="switchState('h192331856_xibox'); return false;"
1950 style="display: none"/>
1951 <span class="caption">XML Instance Representation</span>
1953 <div id="h192331856_xibox" class="contents">
1954 <div style="margin-left: 0em"><...<br/>
1955 <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
1956 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
1958 <span class="occurs">[1]</span>"</span>
1960 <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
1961 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
1963 <span class="occurs">[1]</span>"</span>
1965 <span style="margin-left: 0.5em"> distance="<span class="type">
1966 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1967 <span class="occurs">[0..1]</span>"</span>
1969 <span style="margin-left: 0.5em"> type="<span class="type">
1970 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1971 <span class="occurs">[1]</span>"</span>> <br/>
1972 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
1973 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1974 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
1975 </div></...></div>
1977 <script type="text/javascript">
1979 setState('h192331856_xibox', true);
1983 <div class="sample box">
1985 <input type="button" id="h192331856_diagram_button" class="control"
1986 onclick="switchState('h192331856_diagram'); return false;"
1987 style="display: none"/>
1988 <span class="caption">Diagram</span>
1990 <div id="h192331856_diagram" class="contents">
1991 <img usemap="#h1919634775" src="schemaDiagrams/h1919634775.png"/>
1993 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1919634775.map--><map name="h1919634775">
1994 <area shape="rect" alt="h-993584945" coords="257,0,383,40"
1995 href="phyloxml.xsd.html#h-993584945"/>
1997 <area shape="rect" alt="h577349652" coords="171,50,301,76"
1998 href="phyloxml.xsd.html#h577349652"/>
2000 <area shape="rect" alt="h577349652" coords="171,86,301,112"
2001 href="phyloxml.xsd.html#h577349652"/>
2005 <script type="text/javascript">
2007 setState('h192331856_diagram', true);
2011 <div class="schemaComponent box">
2013 <input type="button" id="h192331856_scbox_button" class="control"
2014 onclick="switchState('h192331856_scbox'); return false;"
2015 style="display: none"/>
2016 <span class="caption">Schema Component Representation</span>
2018 <div id="h192331856_scbox" class="contents">
2019 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2020 <span class="scTag">name</span>="<span class="scContent">CladeRelation</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2021 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2023 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2025 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2026 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2027 <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
2029 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2031 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2032 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2033 <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
2035 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2037 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2038 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2039 <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
2041 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2043 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2044 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2046 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2047 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:complexType</span>></div>
2049 <script type="text/javascript">
2051 setState('h192331856_scbox', false);
2055 <div style="text-align: right; clear: both;">
2056 <a href="#top">top</a>
2059 <h3>Complex Type: <a name="h-993584945" class="name">Confidence</a>
2061 <table class="hierarchy">
2063 <th>Super-types:</th>
2066 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> < <strong>Confidence</strong> (by extension)</td>
2073 <table class="properties">
2079 <th>Used by (from the same schema document)</th>
2080 <td>Complex Type <b>
2081 <a href="#h535307528">Phylogeny</a>
2082 </b>, Complex Type <b>
2083 <a href="#h-1124608460">Clade</a>
2084 </b>, Complex Type <b>
2085 <a href="#h-1122459339">Event</a>
2086 </b>, Complex Type <b>
2087 <a href="#h917087604">Annotation</a>
2088 </b>, Complex Type <b>
2089 <a href="#h-802965662">SequenceRelation</a>
2090 </b>, Complex Type <b>
2091 <a href="#h192331856">CladeRelation</a>
2097 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2102 <div class="sample box">
2104 <input type="button" id="h-993584945_xibox_button" class="control"
2105 onclick="switchState('h-993584945_xibox'); return false;"
2106 style="display: none"/>
2107 <span class="caption">XML Instance Representation</span>
2109 <div id="h-993584945_xibox" class="contents">
2110 <div style="margin-left: 0em"><...<br/>
2111 <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2112 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2113 <span class="occurs">[1]</span>"</span>> <br/>
2114 <span style="margin-left: 1.5em">
2116 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2118 <br/></...></div>
2120 <script type="text/javascript">
2122 setState('h-993584945_xibox', true);
2126 <div class="sample box">
2128 <input type="button" id="h-993584945_diagram_button" class="control"
2129 onclick="switchState('h-993584945_diagram'); return false;"
2130 style="display: none"/>
2131 <span class="caption">Diagram</span>
2133 <div id="h-993584945_diagram" class="contents">
2134 <img usemap="#h1603897912" src="schemaDiagrams/h1603897912.png"/>
2136 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1603897912.map--><map name="h1603897912">
2139 <script type="text/javascript">
2141 setState('h-993584945_diagram', true);
2145 <div class="schemaComponent box">
2147 <input type="button" id="h-993584945_scbox_button" class="control"
2148 onclick="switchState('h-993584945_scbox'); return false;"
2149 style="display: none"/>
2150 <span class="caption">Schema Component Representation</span>
2152 <div id="h-993584945_scbox" class="contents">
2153 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2154 <span class="scTag">name</span>="<span class="scContent">Confidence</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
2155 <span class="scTag">base</span>="<span class="scContent">
2157 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2158 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2159 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2161 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2162 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
2164 <script type="text/javascript">
2166 setState('h-993584945_scbox', false);
2170 <div style="text-align: right; clear: both;">
2171 <a href="#top">top</a>
2174 <h3>Complex Type: <a name="h-494260170" class="name">Custom</a>
2176 <table class="hierarchy">
2178 <th>Super-types:</th>
2186 <table class="properties">
2192 <th>Used by (from the same schema document)</th>
2193 <td>Complex Type <b>
2194 <a href="#h535307528">Phylogeny</a>
2195 </b>, Complex Type <b>
2196 <a href="#h-1124608460">Clade</a>
2202 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2207 <div class="sample box">
2209 <input type="button" id="h-494260170_xibox_button" class="control"
2210 onclick="switchState('h-494260170_xibox'); return false;"
2211 style="display: none"/>
2212 <span class="caption">XML Instance Representation</span>
2214 <div id="h-494260170_xibox" class="contents">
2215 <div style="margin-left: 0em"><...<br/>
2216 <span style="margin-left: 0.5em"> unit="<span class="type">
2217 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2218 <span class="occurs">[0..1]</span>"</span>
2220 <span style="margin-left: 0.5em"> custom_type="<span class="type">
2221 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CustomType" type definition." href="#h890448016">CustomType</a>
2223 <span class="occurs">[1]</span>"</span>
2225 <span style="margin-left: 0.5em"> custom_property="<span class="type">
2226 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CustomProperty" type definition." href="#h-1670259669">CustomProperty</a>
2228 <span class="occurs">[1]</span>"</span>
2230 <span style="margin-left: 0.5em"> id_ref="<span class="type">
2231 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2233 <span class="occurs">[0..1]</span>"</span>> <br/>
2234 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="type">
2235 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="occurs">[1]</span>
2237 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value> <span class="type">
2238 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value> <span class="occurs">[1]</span>
2239 </div></...></div>
2241 <script type="text/javascript">
2243 setState('h-494260170_xibox', true);
2247 <div class="sample box">
2249 <input type="button" id="h-494260170_diagram_button" class="control"
2250 onclick="switchState('h-494260170_diagram'); return false;"
2251 style="display: none"/>
2252 <span class="caption">Diagram</span>
2254 <div id="h-494260170_diagram" class="contents">
2255 <img usemap="#h-1387730639" src="schemaDiagrams/h-1387730639.png"/>
2257 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1387730639.map--><map name="h-1387730639">
2258 <area shape="rect" alt="h890448016" coords="122,106,273,132"
2259 href="phyloxml.xsd.html#h890448016"/>
2261 <area shape="rect" alt="h-1670259669" coords="122,142,301,168"
2262 href="phyloxml.xsd.html#h-1670259669"/>
2264 <area shape="rect" alt="h577349652" coords="122,178,238,204"
2265 href="phyloxml.xsd.html#h577349652"/>
2269 <script type="text/javascript">
2271 setState('h-494260170_diagram', true);
2275 <div class="schemaComponent box">
2277 <input type="button" id="h-494260170_scbox_button" class="control"
2278 onclick="switchState('h-494260170_scbox'); return false;"
2279 style="display: none"/>
2280 <span class="caption">Schema Component Representation</span>
2282 <div id="h-494260170_scbox" class="contents">
2283 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2284 <span class="scTag">name</span>="<span class="scContent">Custom</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2285 <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2287 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2289 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2290 <span class="scTag">name</span>="<span class="scContent">value</span>" <span class="scTag">type</span>="<span class="scContent">
2292 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2293 </span>"/></div></<span class="scTag">xs:sequence</span>></div>
2294 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2295 <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
2297 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2299 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2300 <span class="scTag">name</span>="<span class="scContent">custom_type</span>" <span class="scTag">type</span>="<span class="scContent">
2302 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CustomType" type definition." href="#h890448016">CustomType</a>
2304 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2305 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2306 <span class="scTag">name</span>="<span class="scContent">custom_property</span>" <span class="scTag">type</span>="<span class="scContent">
2308 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CustomProperty" type definition." href="#h-1670259669">CustomProperty</a>
2310 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2311 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2312 <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
2314 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2316 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
2318 <script type="text/javascript">
2320 setState('h-494260170_scbox', false);
2324 <div style="text-align: right; clear: both;">
2325 <a href="#top">top</a>
2328 <h3>Complex Type: <a name="h259010940" class="name">DomainArchitecture</a>
2330 <table class="hierarchy">
2332 <th>Super-types:</th>
2340 <table class="properties">
2343 <td>DomainArchitecture</td>
2346 <th>Used by (from the same schema document)</th>
2347 <td>Complex Type <b>
2348 <a href="#h-1794244794">Sequence</a>
2354 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2359 <div class="sample box">
2361 <input type="button" id="h259010940_xibox_button" class="control"
2362 onclick="switchState('h259010940_xibox'); return false;"
2363 style="display: none"/>
2364 <span class="caption">XML Instance Representation</span>
2366 <div id="h259010940_xibox" class="contents">
2367 <div style="margin-left: 0em"><...<br/>
2368 <span style="margin-left: 0.5em"> length="<span class="type">
2369 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2370 <span class="occurs">[0..1]</span>"</span>> <br/>
2371 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain> <span class="type">
2372 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ProteinDomain" type definition." href="#h-1389097534">ProteinDomain</a>
2373 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain> <span class="occurs">[1..*]</span>
2374 </div></...></div>
2376 <script type="text/javascript">
2378 setState('h259010940_xibox', true);
2382 <div class="sample box">
2384 <input type="button" id="h259010940_diagram_button" class="control"
2385 onclick="switchState('h259010940_diagram'); return false;"
2386 style="display: none"/>
2387 <span class="caption">Diagram</span>
2389 <div id="h259010940_diagram" class="contents">
2390 <img usemap="#h-93417557" src="schemaDiagrams/h-93417557.png"/>
2392 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-93417557.map--><map name="h-93417557">
2393 <area shape="rect" alt="h-1389097534" coords="292,0,390,40"
2394 href="phyloxml.xsd.html#h-1389097534"/>
2398 <script type="text/javascript">
2400 setState('h259010940_diagram', true);
2404 <div class="schemaComponent box">
2406 <input type="button" id="h259010940_scbox_button" class="control"
2407 onclick="switchState('h259010940_scbox'); return false;"
2408 style="display: none"/>
2409 <span class="caption">Schema Component Representation</span>
2411 <div id="h259010940_scbox" class="contents">
2412 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2413 <span class="scTag">name</span>="<span class="scContent">DomainArchitecture</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2414 <span class="scTag">name</span>="<span class="scContent">domain</span>" <span class="scTag">type</span>="<span class="scContent">
2416 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ProteinDomain" type definition." href="#h-1389097534">ProteinDomain</a>
2418 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">1</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2419 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2420 <span class="scTag">name</span>="<span class="scContent">length</span>" <span class="scTag">type</span>="<span class="scContent">
2422 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2423 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
2425 <script type="text/javascript">
2427 setState('h259010940_scbox', false);
2431 <div style="text-align: right; clear: both;">
2432 <a href="#top">top</a>
2435 <h3>Complex Type: <a name="h-1122459339" class="name">Event</a>
2437 <table class="hierarchy">
2439 <th>Super-types:</th>
2447 <table class="properties">
2453 <th>Used by (from the same schema document)</th>
2454 <td>Complex Type <b>
2455 <a href="#h-1124608460">Clade</a>
2461 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2466 <div class="sample box">
2468 <input type="button" id="h-1122459339_xibox_button" class="control"
2469 onclick="switchState('h-1122459339_xibox'); return false;"
2470 style="display: none"/>
2471 <span class="caption">XML Instance Representation</span>
2473 <div id="h-1122459339_xibox" class="contents">
2474 <div style="margin-left: 0em"><...> <br/>
2475 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type> <span class="type">
2476 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "EventType" type definition." href="#h1358103055">EventType</a>
2477 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type> <span class="occurs">[0..1]</span>
2479 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications> <span class="type">
2480 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications> <span class="occurs">[0..1]</span>
2482 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations> <span class="type">
2483 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations> <span class="occurs">[0..1]</span>
2485 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses> <span class="type">
2486 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses> <span class="occurs">[0..1]</span>
2488 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
2489 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2490 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
2491 </div></...></div>
2493 <script type="text/javascript">
2495 setState('h-1122459339_xibox', true);
2499 <div class="sample box">
2501 <input type="button" id="h-1122459339_diagram_button" class="control"
2502 onclick="switchState('h-1122459339_diagram'); return false;"
2503 style="display: none"/>
2504 <span class="caption">Diagram</span>
2506 <div id="h-1122459339_diagram" class="contents">
2507 <img usemap="#h408247698" src="schemaDiagrams/h408247698.png"/>
2509 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h408247698.map--><map name="h408247698">
2510 <area shape="rect" alt="h1358103055" coords="201,0,285,40"
2511 href="phyloxml.xsd.html#h1358103055"/>
2513 <area shape="rect" alt="h-993584945" coords="201,200,327,240"
2514 href="phyloxml.xsd.html#h-993584945"/>
2518 <script type="text/javascript">
2520 setState('h-1122459339_diagram', true);
2524 <div class="schemaComponent box">
2526 <input type="button" id="h-1122459339_scbox_button" class="control"
2527 onclick="switchState('h-1122459339_scbox'); return false;"
2528 style="display: none"/>
2529 <span class="caption">Schema Component Representation</span>
2531 <div id="h-1122459339_scbox" class="contents">
2532 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2533 <span class="scTag">name</span>="<span class="scContent">Event</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2534 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2536 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "EventType" type definition." href="#h1358103055">EventType</a>
2538 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2539 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2540 <span class="scTag">name</span>="<span class="scContent">duplications</span>" <span class="scTag">type</span>="<span class="scContent">
2542 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2543 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2544 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2545 <span class="scTag">name</span>="<span class="scContent">speciations</span>" <span class="scTag">type</span>="<span class="scContent">
2547 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2548 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2549 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2550 <span class="scTag">name</span>="<span class="scContent">losses</span>" <span class="scTag">type</span>="<span class="scContent">
2552 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2553 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2554 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2555 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2557 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2559 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
2561 <script type="text/javascript">
2563 setState('h-1122459339_scbox', false);
2567 <div style="text-align: right; clear: both;">
2568 <a href="#top">top</a>
2571 <h3>Complex Type: <a name="h-853091232" class="name">Id</a>
2573 <table class="hierarchy">
2575 <th>Super-types:</th>
2578 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>Id</strong> (by extension)</td>
2585 <table class="properties">
2591 <th>Used by (from the same schema document)</th>
2592 <td>Complex Type <b>
2593 <a href="#h535307528">Phylogeny</a>
2594 </b>, Complex Type <b>
2595 <a href="#h-1124608460">Clade</a>
2596 </b>, Complex Type <b>
2597 <a href="#h888650454">Taxonomy</a>
2598 </b>, Complex Type <b>
2599 <a href="#h-1794244794">Sequence</a>
2600 </b>, Complex Type <b>
2601 <a href="#h917087604">Annotation</a>
2607 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2612 <div class="sample box">
2614 <input type="button" id="h-853091232_xibox_button" class="control"
2615 onclick="switchState('h-853091232_xibox'); return false;"
2616 style="display: none"/>
2617 <span class="caption">XML Instance Representation</span>
2619 <div id="h-853091232_xibox" class="contents">
2620 <div style="margin-left: 0em"><...<br/>
2621 <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2622 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2623 <span class="occurs">[0..1]</span>"</span>> <br/>
2624 <span style="margin-left: 1.5em">
2626 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2628 <br/></...></div>
2630 <script type="text/javascript">
2632 setState('h-853091232_xibox', true);
2636 <div class="sample box">
2638 <input type="button" id="h-853091232_diagram_button" class="control"
2639 onclick="switchState('h-853091232_diagram'); return false;"
2640 style="display: none"/>
2641 <span class="caption">Diagram</span>
2643 <div id="h-853091232_diagram" class="contents">
2644 <img usemap="#h-1484760249" src="schemaDiagrams/h-1484760249.png"/>
2646 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1484760249.map--><map name="h-1484760249">
2649 <script type="text/javascript">
2651 setState('h-853091232_diagram', true);
2655 <div class="schemaComponent box">
2657 <input type="button" id="h-853091232_scbox_button" class="control"
2658 onclick="switchState('h-853091232_scbox'); return false;"
2659 style="display: none"/>
2660 <span class="caption">Schema Component Representation</span>
2662 <div id="h-853091232_scbox" class="contents">
2663 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2664 <span class="scTag">name</span>="<span class="scContent">Id</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
2665 <span class="scTag">base</span>="<span class="scContent">
2667 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2668 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2669 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2671 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2672 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
2674 <script type="text/javascript">
2676 setState('h-853091232_scbox', false);
2680 <div style="text-align: right; clear: both;">
2681 <a href="#top">top</a>
2684 <h3>Complex Type: <a name="h535307528" class="name">Phylogeny</a>
2686 <table class="hierarchy">
2688 <th>Super-types:</th>
2696 <table class="properties">
2702 <th>Used by (from the same schema document)</th>
2703 <td>Complex Type <b>
2704 <a href="#h155831896">Phyloxml</a>
2710 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2715 <div class="sample box">
2717 <input type="button" id="h535307528_xibox_button" class="control"
2718 onclick="switchState('h535307528_xibox'); return false;"
2719 style="display: none"/>
2720 <span class="caption">XML Instance Representation</span>
2722 <div id="h535307528_xibox" class="contents">
2723 <div style="margin-left: 0em"><...<br/>
2724 <span style="margin-left: 0.5em"> rooted="<span class="type">
2725 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2726 <span class="occurs">[1]</span>"</span>
2728 <span style="margin-left: 0.5em"> rerootable="<span class="type">
2729 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2730 <span class="occurs">[0..1]</span>"</span>
2732 <span style="margin-left: 0.5em"> distance_unit="<span class="type">
2733 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2734 <span class="occurs">[0..1]</span>"</span>
2736 <span style="margin-left: 0.5em"> type="<span class="type">
2737 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2738 <span class="occurs">[0..1]</span>"</span>> <br/>
2739 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="type">
2740 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="occurs">[0..1]</span>
2742 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="type">
2743 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
2744 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="occurs">[0..1]</span>
2746 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description> <span class="type">
2747 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description> <span class="occurs">[0..1]</span>
2749 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="type">
2750 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="occurs">[0..1]</span>
2752 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
2753 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2754 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..*]</span>
2756 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="type">
2757 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
2758 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="occurs">[0..1]</span>
2760 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation> <span class="type">
2761 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CladeRelation" type definition." href="#h192331856">CladeRelation</a>
2762 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation> <span class="occurs">[0..*]</span>
2764 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation> <span class="type">
2765 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelation" type definition." href="#h-802965662">SequenceRelation</a>
2766 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation> <span class="occurs">[0..*]</span>
2768 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom> <span class="type">
2769 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Custom" type definition." href="#h-494260170">Custom</a>
2770 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:custom> <span class="occurs">[0..*]</span>
2772 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
2773 </div></...></div>
2775 <script type="text/javascript">
2777 setState('h535307528_xibox', true);
2781 <div class="sample box">
2783 <input type="button" id="h535307528_diagram_button" class="control"
2784 onclick="switchState('h535307528_diagram'); return false;"
2785 style="display: none"/>
2786 <span class="caption">Diagram</span>
2788 <div id="h535307528_diagram" class="contents">
2789 <img usemap="#h731810719" src="schemaDiagrams/h731810719.png"/>
2791 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h731810719.map--><map name="h731810719">
2792 <area shape="rect" alt="h-853091232" coords="229,50,305,90"
2793 href="phyloxml.xsd.html#h-853091232"/>
2795 <area shape="rect" alt="h-993584945" coords="229,200,355,240"
2796 href="phyloxml.xsd.html#h-993584945"/>
2798 <area shape="rect" alt="h-1124608460" coords="229,250,320,290"
2799 href="phyloxml.xsd.html#h-1124608460"/>
2801 <area shape="rect" alt="h192331856" coords="229,300,383,340"
2802 href="phyloxml.xsd.html#h192331856"/>
2804 <area shape="rect" alt="h-802965662" coords="229,350,404,390"
2805 href="phyloxml.xsd.html#h-802965662"/>
2807 <area shape="rect" alt="h-494260170" coords="229,400,327,440"
2808 href="phyloxml.xsd.html#h-494260170"/>
2812 <script type="text/javascript">
2814 setState('h535307528_diagram', true);
2818 <div class="schemaComponent box">
2820 <input type="button" id="h535307528_scbox_button" class="control"
2821 onclick="switchState('h535307528_scbox'); return false;"
2822 style="display: none"/>
2823 <span class="caption">Schema Component Representation</span>
2825 <div id="h535307528_scbox" class="contents">
2826 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2827 <span class="scTag">name</span>="<span class="scContent">Phylogeny</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2828 <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2830 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2831 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2832 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2833 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
2835 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
2837 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2838 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2839 <span class="scTag">name</span>="<span class="scContent">description</span>" <span class="scTag">type</span>="<span class="scContent">
2841 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2842 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2843 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2844 <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
2846 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span>
2847 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2848 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2849 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2851 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2853 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2854 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2855 <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
2857 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
2859 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2860 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2861 <span class="scTag">name</span>="<span class="scContent">clade_relation</span>" <span class="scTag">type</span>="<span class="scContent">
2863 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CladeRelation" type definition." href="#h192331856">CladeRelation</a>
2865 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2866 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2867 <span class="scTag">name</span>="<span class="scContent">sequence_relation</span>" <span class="scTag">type</span>="<span class="scContent">
2869 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelation" type definition." href="#h-802965662">SequenceRelation</a>
2871 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2872 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2873 <span class="scTag">name</span>="<span class="scContent">custom</span>" <span class="scTag">type</span>="<span class="scContent">
2875 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Custom" type definition." href="#h-494260170">Custom</a>
2877 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2878 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
2879 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2880 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2881 <span class="scTag">name</span>="<span class="scContent">rooted</span>" <span class="scTag">type</span>="<span class="scContent">
2883 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2884 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2885 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2886 <span class="scTag">name</span>="<span class="scContent">rerootable</span>" <span class="scTag">type</span>="<span class="scContent">
2888 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
2890 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2891 <span class="scTag">name</span>="<span class="scContent">distance_unit</span>" <span class="scTag">type</span>="<span class="scContent">
2893 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2895 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2896 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2898 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2899 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
2901 <script type="text/javascript">
2903 setState('h535307528_scbox', false);
2907 <div style="text-align: right; clear: both;">
2908 <a href="#top">top</a>
2911 <h3>Complex Type: <a name="h155831896" class="name">Phyloxml</a>
2913 <table class="hierarchy">
2915 <th>Super-types:</th>
2923 <table class="properties">
2929 <th>Used by (from the same schema document)</th>
2931 <a href="#h270234806">phyloxml</a>
2937 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2942 <div class="sample box">
2944 <input type="button" id="h155831896_xibox_button" class="control"
2945 onclick="switchState('h155831896_xibox'); return false;"
2946 style="display: none"/>
2947 <span class="caption">XML Instance Representation</span>
2949 <div id="h155831896_xibox" class="contents">
2950 <div style="margin-left: 0em"><...> <br/>
2951 <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
2952 <span class="occurs">[1..*]</span>
2955 <div style="margin-left: 3em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="type">
2956 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phylogeny" type definition." href="#h535307528">Phylogeny</a>
2957 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="occurs">[0..*]</span>
2959 <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
2961 <span class="group" style="margin-left: 1.5em">End Sequence</span>
2962 <br/></...></div>
2964 <script type="text/javascript">
2966 setState('h155831896_xibox', true);
2970 <div class="sample box">
2972 <input type="button" id="h155831896_diagram_button" class="control"
2973 onclick="switchState('h155831896_diagram'); return false;"
2974 style="display: none"/>
2975 <span class="caption">Diagram</span>
2977 <div id="h155831896_diagram" class="contents">
2978 <img usemap="#h-354757553" src="schemaDiagrams/h-354757553.png"/>
2980 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-354757553.map--><map name="h-354757553">
2981 <area shape="rect" alt="h535307528" coords="222,0,341,40"
2982 href="phyloxml.xsd.html#h535307528"/>
2986 <script type="text/javascript">
2988 setState('h155831896_diagram', true);
2992 <div class="schemaComponent box">
2994 <input type="button" id="h155831896_scbox_button" class="control"
2995 onclick="switchState('h155831896_scbox'); return false;"
2996 style="display: none"/>
2997 <span class="caption">Schema Component Representation</span>
2999 <div id="h155831896_scbox" class="contents">
3000 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3001 <span class="scTag">name</span>="<span class="scContent">Phyloxml</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>
3002 <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3003 <span class="scTag">name</span>="<span class="scContent">phylogeny</span>" <span class="scTag">type</span>="<span class="scContent">
3005 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phylogeny" type definition." href="#h535307528">Phylogeny</a>
3007 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3008 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
3009 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
3011 <script type="text/javascript">
3013 setState('h155831896_scbox', false);
3017 <div style="text-align: right; clear: both;">
3018 <a href="#top">top</a>
3021 <h3>Complex Type: <a name="h-1389097534" class="name">ProteinDomain</a>
3023 <table class="hierarchy">
3025 <th>Super-types:</th>
3028 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>ProteinDomain</strong> (by extension)</td>
3035 <table class="properties">
3038 <td>ProteinDomain</td>
3041 <th>Used by (from the same schema document)</th>
3042 <td>Complex Type <b>
3043 <a href="#h259010940">DomainArchitecture</a>
3049 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3054 <div class="sample box">
3056 <input type="button" id="h-1389097534_xibox_button" class="control"
3057 onclick="switchState('h-1389097534_xibox'); return false;"
3058 style="display: none"/>
3059 <span class="caption">XML Instance Representation</span>
3061 <div id="h-1389097534_xibox" class="contents">
3062 <div style="margin-left: 0em"><...<br/>
3063 <span style="margin-left: 0.5em" class="newFields"> from="<span class="type">
3064 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3065 <span class="occurs">[1]</span>"</span>
3067 <span style="margin-left: 0.5em" class="newFields"> to="<span class="type">
3068 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3069 <span class="occurs">[1]</span>"</span>
3071 <span style="margin-left: 0.5em" class="newFields"> confidence="<span class="type">
3072 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3073 <span class="occurs">[0..1]</span>"</span>
3075 <span style="margin-left: 0.5em" class="newFields"> id="<span class="type">
3076 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3077 <span class="occurs">[0..1]</span>"</span>> <br/>
3078 <span style="margin-left: 1.5em">
3080 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3082 <br/></...></div>
3084 <script type="text/javascript">
3086 setState('h-1389097534_xibox', true);
3090 <div class="sample box">
3092 <input type="button" id="h-1389097534_diagram_button" class="control"
3093 onclick="switchState('h-1389097534_diagram'); return false;"
3094 style="display: none"/>
3095 <span class="caption">Diagram</span>
3097 <div id="h-1389097534_diagram" class="contents">
3098 <img usemap="#h1501379365" src="schemaDiagrams/h1501379365.png"/>
3100 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1501379365.map--><map name="h1501379365">
3103 <script type="text/javascript">
3105 setState('h-1389097534_diagram', true);
3109 <div class="schemaComponent box">
3111 <input type="button" id="h-1389097534_scbox_button" class="control"
3112 onclick="switchState('h-1389097534_scbox'); return false;"
3113 style="display: none"/>
3114 <span class="caption">Schema Component Representation</span>
3116 <div id="h-1389097534_scbox" class="contents">
3117 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3118 <span class="scTag">name</span>="<span class="scContent">ProteinDomain</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
3119 <span class="scTag">base</span>="<span class="scContent">
3121 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3122 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3123 <span class="scTag">name</span>="<span class="scContent">from</span>" <span class="scTag">type</span>="<span class="scContent">
3125 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3126 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3127 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3128 <span class="scTag">name</span>="<span class="scContent">to</span>" <span class="scTag">type</span>="<span class="scContent">
3130 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3131 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3132 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3133 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3135 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3137 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3138 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3140 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3141 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
3143 <script type="text/javascript">
3145 setState('h-1389097534_scbox', false);
3149 <div style="text-align: right; clear: both;">
3150 <a href="#top">top</a>
3153 <h3>Complex Type: <a name="h-1794244794" class="name">Sequence</a>
3155 <table class="hierarchy">
3157 <th>Super-types:</th>
3165 <table class="properties">
3171 <th>Used by (from the same schema document)</th>
3172 <td>Complex Type <b>
3173 <a href="#h-1124608460">Clade</a>
3179 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3184 <div class="sample box">
3186 <input type="button" id="h-1794244794_xibox_button" class="control"
3187 onclick="switchState('h-1794244794_xibox'); return false;"
3188 style="display: none"/>
3189 <span class="caption">XML Instance Representation</span>
3191 <div id="h-1794244794_xibox" class="contents">
3192 <div style="margin-left: 0em"><...<br/>
3193 <span style="margin-left: 0.5em"> id_source="<span class="type">
3194 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
3196 <span class="occurs">[0..1]</span>"</span>
3198 <span style="margin-left: 0.5em"> type="<span class="type">
3199 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3200 <span class="occurs">[0..1]</span>"</span>> <br/>
3201 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="type">
3202 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
3203 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="occurs">[0..1]</span>
3205 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession> <span class="type">
3206 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession> <span class="occurs">[0..1]</span>
3208 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gene_name> <span class="type">
3209 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gene_name> <span class="occurs">[0..1]</span>
3211 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location> <span class="type">
3212 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location> <span class="occurs">[0..1]</span>
3214 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq> <span class="type">
3215 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "MolSeq" type definition." href="#h-213750342">MolSeq</a>
3216 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq> <span class="occurs">[0..1]</span>
3218 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="type">
3219 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
3220 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="occurs">[0..1]</span>
3222 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation> <span class="type">
3223 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Annotation" type definition." href="#h917087604">Annotation</a>
3224 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation> <span class="occurs">[0..*]</span>
3226 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture> <span class="type">
3227 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "DomainArchitecture" type definition." href="#h259010940">DomainArchitecture</a>
3228 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture> <span class="occurs">[0..1]</span>
3230 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3231 </div></...></div>
3233 <script type="text/javascript">
3235 setState('h-1794244794_xibox', true);
3239 <div class="sample box">
3241 <input type="button" id="h-1794244794_diagram_button" class="control"
3242 onclick="switchState('h-1794244794_diagram'); return false;"
3243 style="display: none"/>
3244 <span class="caption">Diagram</span>
3246 <div id="h-1794244794_diagram" class="contents">
3247 <img usemap="#h1156064289" src="schemaDiagrams/h1156064289.png"/>
3249 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h1156064289.map--><map name="h1156064289">
3250 <area shape="rect" alt="h-853091232" coords="222,0,298,40"
3251 href="phyloxml.xsd.html#h-853091232"/>
3253 <area shape="rect" alt="h-213750342" coords="222,200,327,240"
3254 href="phyloxml.xsd.html#h-213750342"/>
3256 <area shape="rect" alt="h-676012345" coords="222,250,299,290"
3257 href="phyloxml.xsd.html#h-676012345"/>
3259 <area shape="rect" alt="h917087604" coords="222,300,348,340"
3260 href="phyloxml.xsd.html#h917087604"/>
3262 <area shape="rect" alt="h259010940" coords="222,350,411,390"
3263 href="phyloxml.xsd.html#h259010940"/>
3265 <area shape="rect" alt="h-1482113798" coords="136,451,273,477"
3266 href="phyloxml.xsd.html#h-1482113798"/>
3270 <script type="text/javascript">
3272 setState('h-1794244794_diagram', true);
3276 <div class="schemaComponent box">
3278 <input type="button" id="h-1794244794_scbox_button" class="control"
3279 onclick="switchState('h-1794244794_scbox'); return false;"
3280 style="display: none"/>
3281 <span class="caption">Schema Component Representation</span>
3283 <div id="h-1794244794_scbox" class="contents">
3284 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3285 <span class="scTag">name</span>="<span class="scContent">Sequence</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3286 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3288 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
3290 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3291 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3292 <span class="scTag">name</span>="<span class="scContent">accession</span>" <span class="scTag">type</span>="<span class="scContent">
3294 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3295 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3296 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3297 <span class="scTag">name</span>="<span class="scContent">gene_name</span>" <span class="scTag">type</span>="<span class="scContent">
3299 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3300 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3301 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3302 <span class="scTag">name</span>="<span class="scContent">location</span>" <span class="scTag">type</span>="<span class="scContent">
3304 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3305 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3306 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3307 <span class="scTag">name</span>="<span class="scContent">mol_seq</span>" <span class="scTag">type</span>="<span class="scContent">
3309 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "MolSeq" type definition." href="#h-213750342">MolSeq</a>
3311 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3312 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3313 <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
3315 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
3317 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3318 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3319 <span class="scTag">name</span>="<span class="scContent">annotation</span>" <span class="scTag">type</span>="<span class="scContent">
3321 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Annotation" type definition." href="#h917087604">Annotation</a>
3323 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3324 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3325 <span class="scTag">name</span>="<span class="scContent">domain_architecture</span>" <span class="scTag">type</span>="<span class="scContent">
3327 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "DomainArchitecture" type definition." href="#h259010940">DomainArchitecture</a>
3329 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3330 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
3331 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
3332 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3333 <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
3335 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
3338 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3339 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3341 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3342 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
3344 <script type="text/javascript">
3346 setState('h-1794244794_scbox', false);
3350 <div style="text-align: right; clear: both;">
3351 <a href="#top">top</a>
3354 <h3>Complex Type: <a name="h-802965662" class="name">SequenceRelation</a>
3356 <table class="hierarchy">
3358 <th>Super-types:</th>
3366 <table class="properties">
3369 <td>SequenceRelation</td>
3372 <th>Used by (from the same schema document)</th>
3373 <td>Complex Type <b>
3374 <a href="#h535307528">Phylogeny</a>
3380 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3385 <div class="sample box">
3387 <input type="button" id="h-802965662_xibox_button" class="control"
3388 onclick="switchState('h-802965662_xibox'); return false;"
3389 style="display: none"/>
3390 <span class="caption">XML Instance Representation</span>
3392 <div id="h-802965662_xibox" class="contents">
3393 <div style="margin-left: 0em"><...<br/>
3394 <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
3395 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
3397 <span class="occurs">[1]</span>"</span>
3399 <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
3400 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
3402 <span class="occurs">[1]</span>"</span>
3404 <span style="margin-left: 0.5em"> distance="<span class="type">
3405 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3406 <span class="occurs">[0..1]</span>"</span>
3408 <span style="margin-left: 0.5em"> type="<span class="type">
3409 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelationType" type definition." href="#h519911868">SequenceRelationType</a>
3411 <span class="occurs">[1]</span>"</span>> <br/>
3412 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
3413 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
3414 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
3415 </div></...></div>
3417 <script type="text/javascript">
3419 setState('h-802965662_xibox', true);
3423 <div class="sample box">
3425 <input type="button" id="h-802965662_diagram_button" class="control"
3426 onclick="switchState('h-802965662_diagram'); return false;"
3427 style="display: none"/>
3428 <span class="caption">Diagram</span>
3430 <div id="h-802965662_diagram" class="contents">
3431 <img usemap="#h230020485" src="schemaDiagrams/h230020485.png"/>
3433 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h230020485.map--><map name="h230020485">
3434 <area shape="rect" alt="h-993584945" coords="278,0,404,40"
3435 href="phyloxml.xsd.html#h-993584945"/>
3437 <area shape="rect" alt="h577349652" coords="192,50,322,76"
3438 href="phyloxml.xsd.html#h577349652"/>
3440 <area shape="rect" alt="h577349652" coords="192,86,322,112"
3441 href="phyloxml.xsd.html#h577349652"/>
3443 <area shape="rect" alt="h519911868" coords="192,158,294,184"
3444 href="phyloxml.xsd.html#h519911868"/>
3448 <script type="text/javascript">
3450 setState('h-802965662_diagram', true);
3454 <div class="schemaComponent box">
3456 <input type="button" id="h-802965662_scbox_button" class="control"
3457 onclick="switchState('h-802965662_scbox'); return false;"
3458 style="display: none"/>
3459 <span class="caption">Schema Component Representation</span>
3461 <div id="h-802965662_scbox" class="contents">
3462 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3463 <span class="scTag">name</span>="<span class="scContent">SequenceRelation</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3464 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3466 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
3468 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
3469 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3470 <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
3472 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
3474 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3475 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3476 <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
3478 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
3480 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3481 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3482 <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
3484 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3486 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3487 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3489 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelationType" type definition." href="#h519911868">SequenceRelationType</a>
3491 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:complexType</span>></div>
3493 <script type="text/javascript">
3495 setState('h-802965662_scbox', false);
3499 <div style="text-align: right; clear: both;">
3500 <a href="#top">top</a>
3503 <h3>Complex Type: <a name="h888650454" class="name">Taxonomy</a>
3505 <table class="hierarchy">
3507 <th>Super-types:</th>
3515 <table class="properties">
3521 <th>Used by (from the same schema document)</th>
3522 <td>Complex Type <b>
3523 <a href="#h-1124608460">Clade</a>
3529 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3534 <div class="sample box">
3536 <input type="button" id="h888650454_xibox_button" class="control"
3537 onclick="switchState('h888650454_xibox'); return false;"
3538 style="display: none"/>
3539 <span class="caption">XML Instance Representation</span>
3541 <div id="h888650454_xibox" class="contents">
3542 <div style="margin-left: 0em"><...<br/>
3543 <span style="margin-left: 0.5em"> type="<span class="type">
3544 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3545 <span class="occurs">[0..1]</span>"</span>> <br/>
3546 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="type">
3547 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
3548 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="occurs">[0..1]</span>
3550 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code> <span class="type">
3551 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "TaxonomyCode" type definition." href="#h712147427">TaxonomyCode</a>
3552 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code> <span class="occurs">[0..1]</span>
3554 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name> <span class="type">
3555 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name> <span class="occurs">[0..1]</span>
3557 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name> <span class="type">
3558 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name> <span class="occurs">[0..1]</span>
3560 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank> <span class="type">
3561 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Rank" type definition." href="#h518348337">Rank</a>
3562 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank> <span class="occurs">[0..1]</span>
3564 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="type">
3565 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
3566 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="occurs">[0..1]</span>
3568 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3569 </div></...></div>
3571 <script type="text/javascript">
3573 setState('h888650454_xibox', true);
3577 <div class="sample box">
3579 <input type="button" id="h888650454_diagram_button" class="control"
3580 onclick="switchState('h888650454_diagram'); return false;"
3581 style="display: none"/>
3582 <span class="caption">Diagram</span>
3584 <div id="h888650454_diagram" class="contents">
3585 <img usemap="#h992625297" src="schemaDiagrams/h992625297.png"/>
3587 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h992625297.map--><map name="h992625297">
3588 <area shape="rect" alt="h-853091232" coords="222,0,298,40"
3589 href="phyloxml.xsd.html#h-853091232"/>
3591 <area shape="rect" alt="h712147427" coords="222,50,306,90"
3592 href="phyloxml.xsd.html#h712147427"/>
3594 <area shape="rect" alt="h518348337" coords="222,200,306,240"
3595 href="phyloxml.xsd.html#h518348337"/>
3597 <area shape="rect" alt="h-676012345" coords="222,250,299,290"
3598 href="phyloxml.xsd.html#h-676012345"/>
3602 <script type="text/javascript">
3604 setState('h888650454_diagram', true);
3608 <div class="schemaComponent box">
3610 <input type="button" id="h888650454_scbox_button" class="control"
3611 onclick="switchState('h888650454_scbox'); return false;"
3612 style="display: none"/>
3613 <span class="caption">Schema Component Representation</span>
3615 <div id="h888650454_scbox" class="contents">
3616 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3617 <span class="scTag">name</span>="<span class="scContent">Taxonomy</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3618 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3620 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
3622 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3623 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3624 <span class="scTag">name</span>="<span class="scContent">code</span>" <span class="scTag">type</span>="<span class="scContent">
3626 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "TaxonomyCode" type definition." href="#h712147427">TaxonomyCode</a>
3628 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3629 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3630 <span class="scTag">name</span>="<span class="scContent">scientific_name</span>" <span class="scTag">type</span>="<span class="scContent">
3632 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3633 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3634 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3635 <span class="scTag">name</span>="<span class="scContent">common_name</span>" <span class="scTag">type</span>="<span class="scContent">
3637 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3638 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3639 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3640 <span class="scTag">name</span>="<span class="scContent">rank</span>" <span class="scTag">type</span>="<span class="scContent">
3642 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Rank" type definition." href="#h518348337">Rank</a>
3644 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3645 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3646 <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
3648 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
3650 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3651 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
3652 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
3653 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3654 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3656 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3657 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
3659 <script type="text/javascript">
3661 setState('h888650454_scbox', false);
3665 <div style="text-align: right; clear: both;">
3666 <a href="#top">top</a>
3669 <h3>Complex Type: <a name="h-676012345" class="name">Uri</a>
3671 <table class="hierarchy">
3673 <th>Super-types:</th>
3676 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span> < <strong>Uri</strong> (by extension)</td>
3683 <table class="properties">
3689 <th>Used by (from the same schema document)</th>
3690 <td>Complex Type <b>
3691 <a href="#h888650454">Taxonomy</a>
3692 </b>, Complex Type <b>
3693 <a href="#h-1794244794">Sequence</a>
3694 </b>, Complex Type <b>
3695 <a href="#h917087604">Annotation</a>
3701 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3706 <div class="sample box">
3708 <input type="button" id="h-676012345_xibox_button" class="control"
3709 onclick="switchState('h-676012345_xibox'); return false;"
3710 style="display: none"/>
3711 <span class="caption">XML Instance Representation</span>
3713 <div id="h-676012345_xibox" class="contents">
3714 <div style="margin-left: 0em"><...<br/>
3715 <span style="margin-left: 0.5em" class="newFields"> desc="<span class="type">
3716 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3717 <span class="occurs">[0..1]</span>"</span>
3719 <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
3720 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3721 <span class="occurs">[0..1]</span>"</span>> <br/>
3722 <span style="margin-left: 1.5em">
3724 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
3726 <br/></...></div>
3728 <script type="text/javascript">
3730 setState('h-676012345_xibox', true);
3734 <div class="sample box">
3736 <input type="button" id="h-676012345_diagram_button" class="control"
3737 onclick="switchState('h-676012345_diagram'); return false;"
3738 style="display: none"/>
3739 <span class="caption">Diagram</span>
3741 <div id="h-676012345_diagram" class="contents">
3742 <img usemap="#h-1930055872" src="schemaDiagrams/h-1930055872.png"/>
3744 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1930055872.map--><map name="h-1930055872">
3747 <script type="text/javascript">
3749 setState('h-676012345_diagram', true);
3753 <div class="schemaComponent box">
3755 <input type="button" id="h-676012345_scbox_button" class="control"
3756 onclick="switchState('h-676012345_scbox'); return false;"
3757 style="display: none"/>
3758 <span class="caption">Schema Component Representation</span>
3760 <div id="h-676012345_scbox" class="contents">
3761 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3762 <span class="scTag">name</span>="<span class="scContent">Uri</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
3763 <span class="scTag">base</span>="<span class="scContent">
3765 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
3766 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3767 <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
3769 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3771 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3772 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3774 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3775 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
3777 <script type="text/javascript">
3779 setState('h-676012345_scbox', false);
3783 <div style="text-align: right; clear: both;">
3784 <a href="#top">top</a>
3787 <h3>Simple Type: <a name="h-1670259669" class="name">CustomProperty</a>
3789 <table class="hierarchy">
3791 <th>Super-types:</th>
3794 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>CustomProperty</strong> (by restriction)</td>
3801 <table class="properties">
3804 <td>CustomProperty</td>
3807 <th>Used by (from the same schema document)</th>
3808 <td>Complex Type <b>
3809 <a href="#h-494260170">Custom</a>
3817 <li>Base XSD Type: token</li>
3821 <em>value</em> comes from list: {'phylogeny'|'clade'|'node'|'sequence'|'taxonomy'|'other'}</li>
3826 <div class="sample box">
3828 <input type="button" id="h-1670259669_diagram_button" class="control"
3829 onclick="switchState('h-1670259669_diagram'); return false;"
3830 style="display: none"/>
3831 <span class="caption">Diagram</span>
3833 <div id="h-1670259669_diagram" class="contents">
3834 <img usemap="#h191215708" src="schemaDiagrams/h191215708.png"/>
3836 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h191215708.map--><map name="h191215708">
3839 <script type="text/javascript">
3841 setState('h-1670259669_diagram', true);
3845 <div class="schemaComponent box">
3847 <input type="button" id="h-1670259669_scbox_button" class="control"
3848 onclick="switchState('h-1670259669_scbox'); return false;"
3849 style="display: none"/>
3850 <span class="caption">Schema Component Representation</span>
3852 <div id="h-1670259669_scbox" class="contents">
3853 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
3854 <span class="scTag">name</span>="<span class="scContent">CustomProperty</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
3855 <span class="scTag">base</span>="<span class="scContent">
3857 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3858 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3859 <span class="scTag">value</span>="<span class="scContent">phylogeny</span>"/></div>
3860 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3861 <span class="scTag">value</span>="<span class="scContent">clade</span>"/></div>
3862 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3863 <span class="scTag">value</span>="<span class="scContent">node</span>"/></div>
3864 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3865 <span class="scTag">value</span>="<span class="scContent">sequence</span>"/></div>
3866 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3867 <span class="scTag">value</span>="<span class="scContent">taxonomy</span>"/></div>
3868 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3869 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
3871 <script type="text/javascript">
3873 setState('h-1670259669_scbox', false);
3877 <div style="text-align: right; clear: both;">
3878 <a href="#top">top</a>
3881 <h3>Simple Type: <a name="h890448016" class="name">CustomType</a>
3883 <table class="hierarchy">
3885 <th>Super-types:</th>
3888 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>CustomType</strong> (by restriction)</td>
3895 <table class="properties">
3901 <th>Used by (from the same schema document)</th>
3902 <td>Complex Type <b>
3903 <a href="#h-494260170">Custom</a>
3911 <li>Base XSD Type: token</li>
3915 <em>value</em> comes from list: {'string'|'character'|'decimal'|'integer'|'byte'|'boolean'|'uri'|'other'}</li>
3920 <div class="sample box">
3922 <input type="button" id="h890448016_diagram_button" class="control"
3923 onclick="switchState('h890448016_diagram'); return false;"
3924 style="display: none"/>
3925 <span class="caption">Diagram</span>
3927 <div id="h890448016_diagram" class="contents">
3928 <img usemap="#h-1752265449" src="schemaDiagrams/h-1752265449.png"/>
3930 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1752265449.map--><map name="h-1752265449">
3933 <script type="text/javascript">
3935 setState('h890448016_diagram', true);
3939 <div class="schemaComponent box">
3941 <input type="button" id="h890448016_scbox_button" class="control"
3942 onclick="switchState('h890448016_scbox'); return false;"
3943 style="display: none"/>
3944 <span class="caption">Schema Component Representation</span>
3946 <div id="h890448016_scbox" class="contents">
3947 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
3948 <span class="scTag">name</span>="<span class="scContent">CustomType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
3949 <span class="scTag">base</span>="<span class="scContent">
3951 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3952 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3953 <span class="scTag">value</span>="<span class="scContent">string</span>"/></div>
3954 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3955 <span class="scTag">value</span>="<span class="scContent">character</span>"/></div>
3956 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3957 <span class="scTag">value</span>="<span class="scContent">decimal</span>"/></div>
3958 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3959 <span class="scTag">value</span>="<span class="scContent">integer</span>"/></div>
3960 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3961 <span class="scTag">value</span>="<span class="scContent">byte</span>"/></div>
3962 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3963 <span class="scTag">value</span>="<span class="scContent">boolean</span>"/></div>
3964 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3965 <span class="scTag">value</span>="<span class="scContent">uri</span>"/></div>
3966 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
3967 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
3969 <script type="text/javascript">
3971 setState('h890448016_scbox', false);
3975 <div style="text-align: right; clear: both;">
3976 <a href="#top">top</a>
3979 <h3>Simple Type: <a name="h-979596407" class="name">Distribution</a>
3981 <table class="hierarchy">
3983 <th>Super-types:</th>
3986 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>Distribution</strong> (by restriction)</td>
3993 <table class="properties">
3996 <td>Distribution</td>
4002 <li>Base XSD Type: token</li>
4007 <div class="sample box">
4009 <input type="button" id="h-979596407_diagram_button" class="control"
4010 onclick="switchState('h-979596407_diagram'); return false;"
4011 style="display: none"/>
4012 <span class="caption">Diagram</span>
4014 <div id="h-979596407_diagram" class="contents">
4015 <img usemap="#h-265752642" src="schemaDiagrams/h-265752642.png"/>
4017 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-265752642.map--><map name="h-265752642">
4020 <script type="text/javascript">
4022 setState('h-979596407_diagram', true);
4026 <div class="schemaComponent box">
4028 <input type="button" id="h-979596407_scbox_button" class="control"
4029 onclick="switchState('h-979596407_scbox'); return false;"
4030 style="display: none"/>
4031 <span class="caption">Schema Component Representation</span>
4033 <div id="h-979596407_scbox" class="contents">
4034 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4035 <span class="scTag">name</span>="<span class="scContent">Distribution</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4036 <span class="scTag">base</span>="<span class="scContent">
4038 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4039 </span>"/></div></<span class="scTag">xs:simpleType</span>></div>
4041 <script type="text/javascript">
4043 setState('h-979596407_scbox', false);
4047 <div style="text-align: right; clear: both;">
4048 <a href="#top">top</a>
4051 <h3>Simple Type: <a name="h1358103055" class="name">EventType</a>
4053 <table class="hierarchy">
4055 <th>Super-types:</th>
4058 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>EventType</strong> (by restriction)</td>
4065 <table class="properties">
4071 <th>Used by (from the same schema document)</th>
4072 <td>Complex Type <b>
4073 <a href="#h-1122459339">Event</a>
4081 <li>Base XSD Type: token</li>
4085 <em>value</em> comes from list: {'transfer'|'fusion'|'root'|'speciation_or_duplication'|'other'|'mixed'|'unassigned'}</li>
4090 <div class="sample box">
4092 <input type="button" id="h1358103055_diagram_button" class="control"
4093 onclick="switchState('h1358103055_diagram'); return false;"
4094 style="display: none"/>
4095 <span class="caption">Diagram</span>
4097 <div id="h1358103055_diagram" class="contents">
4098 <img usemap="#h77064440" src="schemaDiagrams/h77064440.png"/>
4100 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h77064440.map--><map name="h77064440">
4103 <script type="text/javascript">
4105 setState('h1358103055_diagram', true);
4109 <div class="schemaComponent box">
4111 <input type="button" id="h1358103055_scbox_button" class="control"
4112 onclick="switchState('h1358103055_scbox'); return false;"
4113 style="display: none"/>
4114 <span class="caption">Schema Component Representation</span>
4116 <div id="h1358103055_scbox" class="contents">
4117 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4118 <span class="scTag">name</span>="<span class="scContent">EventType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4119 <span class="scTag">base</span>="<span class="scContent">
4121 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4122 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4123 <span class="scTag">value</span>="<span class="scContent">transfer</span>"/></div>
4124 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4125 <span class="scTag">value</span>="<span class="scContent">fusion</span>"/></div>
4126 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4127 <span class="scTag">value</span>="<span class="scContent">root</span>"/></div>
4128 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4129 <span class="scTag">value</span>="<span class="scContent">speciation_or_duplication</span>"/></div>
4130 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4131 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div>
4132 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4133 <span class="scTag">value</span>="<span class="scContent">mixed</span>"/></div>
4134 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4135 <span class="scTag">value</span>="<span class="scContent">unassigned</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
4137 <script type="text/javascript">
4139 setState('h1358103055_scbox', false);
4143 <div style="text-align: right; clear: both;">
4144 <a href="#top">top</a>
4147 <h3>Simple Type: <a name="h-213750342" class="name">MolSeq</a>
4149 <table class="hierarchy">
4151 <th>Super-types:</th>
4154 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>MolSeq</strong> (by restriction)</td>
4161 <table class="properties">
4167 <th>Used by (from the same schema document)</th>
4168 <td>Complex Type <b>
4169 <a href="#h-1794244794">Sequence</a>
4177 <li>Base XSD Type: token</li>
4181 <em>pattern</em> = [a-zA-Z\.\-\?\*_]+</li>
4186 <div class="sample box">
4188 <input type="button" id="h-213750342_diagram_button" class="control"
4189 onclick="switchState('h-213750342_diagram'); return false;"
4190 style="display: none"/>
4191 <span class="caption">Diagram</span>
4193 <div id="h-213750342_diagram" class="contents">
4194 <img usemap="#h-100858323" src="schemaDiagrams/h-100858323.png"/>
4196 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-100858323.map--><map name="h-100858323">
4199 <script type="text/javascript">
4201 setState('h-213750342_diagram', true);
4205 <div class="schemaComponent box">
4207 <input type="button" id="h-213750342_scbox_button" class="control"
4208 onclick="switchState('h-213750342_scbox'); return false;"
4209 style="display: none"/>
4210 <span class="caption">Schema Component Representation</span>
4212 <div id="h-213750342_scbox" class="contents">
4213 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4214 <span class="scTag">name</span>="<span class="scContent">MolSeq</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4215 <span class="scTag">base</span>="<span class="scContent">
4217 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4218 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:pattern</span>
4219 <span class="scTag">value</span>="<span class="scContent">[a-zA-Z\.\-\?\*_]+</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
4221 <script type="text/javascript">
4223 setState('h-213750342_scbox', false);
4227 <div style="text-align: right; clear: both;">
4228 <a href="#top">top</a>
4231 <h3>Simple Type: <a name="h518348337" class="name">Rank</a>
4233 <table class="hierarchy">
4235 <th>Super-types:</th>
4238 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>Rank</strong> (by restriction)</td>
4245 <table class="properties">
4251 <th>Used by (from the same schema document)</th>
4252 <td>Complex Type <b>
4253 <a href="#h888650454">Taxonomy</a>
4261 <li>Base XSD Type: token</li>
4265 <em>value</em> comes from list: {'domain'|'kingdom'|'branch'|'phylum'|'subphylum'|'division'|'superclass'|'class'|'subclass'|'superorder'|'order'|'suborder'|'superfamily'|'family'|'subfamily'|'genus'|'subgenus'|'species'|'subspecies'|'variety'|'form'|'cultivar'|'unknown'|'other'}</li>
4270 <div class="sample box">
4272 <input type="button" id="h518348337_diagram_button" class="control"
4273 onclick="switchState('h518348337_diagram'); return false;"
4274 style="display: none"/>
4275 <span class="caption">Diagram</span>
4277 <div id="h518348337_diagram" class="contents">
4278 <img usemap="#h-1363552746" src="schemaDiagrams/h-1363552746.png"/>
4280 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-1363552746.map--><map name="h-1363552746">
4283 <script type="text/javascript">
4285 setState('h518348337_diagram', true);
4289 <div class="schemaComponent box">
4291 <input type="button" id="h518348337_scbox_button" class="control"
4292 onclick="switchState('h518348337_scbox'); return false;"
4293 style="display: none"/>
4294 <span class="caption">Schema Component Representation</span>
4296 <div id="h518348337_scbox" class="contents">
4297 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4298 <span class="scTag">name</span>="<span class="scContent">Rank</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4299 <span class="scTag">base</span>="<span class="scContent">
4301 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4302 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4303 <span class="scTag">value</span>="<span class="scContent">domain</span>"/></div>
4304 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4305 <span class="scTag">value</span>="<span class="scContent">kingdom</span>"/></div>
4306 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4307 <span class="scTag">value</span>="<span class="scContent">branch</span>"/></div>
4308 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4309 <span class="scTag">value</span>="<span class="scContent">phylum</span>"/></div>
4310 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4311 <span class="scTag">value</span>="<span class="scContent">subphylum</span>"/></div>
4312 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4313 <span class="scTag">value</span>="<span class="scContent">division</span>"/></div>
4314 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4315 <span class="scTag">value</span>="<span class="scContent">superclass</span>"/></div>
4316 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4317 <span class="scTag">value</span>="<span class="scContent">class</span>"/></div>
4318 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4319 <span class="scTag">value</span>="<span class="scContent">subclass</span>"/></div>
4320 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4321 <span class="scTag">value</span>="<span class="scContent">superorder</span>"/></div>
4322 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4323 <span class="scTag">value</span>="<span class="scContent">order</span>"/></div>
4324 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4325 <span class="scTag">value</span>="<span class="scContent">suborder</span>"/></div>
4326 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4327 <span class="scTag">value</span>="<span class="scContent">superfamily</span>"/></div>
4328 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4329 <span class="scTag">value</span>="<span class="scContent">family</span>"/></div>
4330 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4331 <span class="scTag">value</span>="<span class="scContent">subfamily</span>"/></div>
4332 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4333 <span class="scTag">value</span>="<span class="scContent">genus</span>"/></div>
4334 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4335 <span class="scTag">value</span>="<span class="scContent">subgenus</span>"/></div>
4336 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4337 <span class="scTag">value</span>="<span class="scContent">species</span>"/></div>
4338 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4339 <span class="scTag">value</span>="<span class="scContent">subspecies</span>"/></div>
4340 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4341 <span class="scTag">value</span>="<span class="scContent">variety</span>"/></div>
4342 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4343 <span class="scTag">value</span>="<span class="scContent">form</span>"/></div>
4344 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4345 <span class="scTag">value</span>="<span class="scContent">cultivar</span>"/></div>
4346 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4347 <span class="scTag">value</span>="<span class="scContent">unknown</span>"/></div>
4348 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4349 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
4351 <script type="text/javascript">
4353 setState('h518348337_scbox', false);
4357 <div style="text-align: right; clear: both;">
4358 <a href="#top">top</a>
4361 <h3>Simple Type: <a name="h519911868" class="name">SequenceRelationType</a>
4363 <table class="hierarchy">
4365 <th>Super-types:</th>
4368 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>SequenceRelationType</strong> (by restriction)</td>
4375 <table class="properties">
4378 <td>SequenceRelationType</td>
4381 <th>Used by (from the same schema document)</th>
4382 <td>Complex Type <b>
4383 <a href="#h-802965662">SequenceRelation</a>
4391 <li>Base XSD Type: token</li>
4395 <em>value</em> comes from list: {'orthology'|'one_to_one_orthology'|'super_orthology'|'paralogy'|'ultra_paralogy'|'xenology'|'unknown'|'other'}</li>
4400 <div class="sample box">
4402 <input type="button" id="h519911868_diagram_button" class="control"
4403 onclick="switchState('h519911868_diagram'); return false;"
4404 style="display: none"/>
4405 <span class="caption">Diagram</span>
4407 <div id="h519911868_diagram" class="contents">
4408 <img usemap="#h-465227925" src="schemaDiagrams/h-465227925.png"/>
4410 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h-465227925.map--><map name="h-465227925">
4413 <script type="text/javascript">
4415 setState('h519911868_diagram', true);
4419 <div class="schemaComponent box">
4421 <input type="button" id="h519911868_scbox_button" class="control"
4422 onclick="switchState('h519911868_scbox'); return false;"
4423 style="display: none"/>
4424 <span class="caption">Schema Component Representation</span>
4426 <div id="h519911868_scbox" class="contents">
4427 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4428 <span class="scTag">name</span>="<span class="scContent">SequenceRelationType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4429 <span class="scTag">base</span>="<span class="scContent">
4431 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4432 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4433 <span class="scTag">value</span>="<span class="scContent">orthology</span>"/></div>
4434 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4435 <span class="scTag">value</span>="<span class="scContent">one_to_one_orthology</span>"/></div>
4436 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4437 <span class="scTag">value</span>="<span class="scContent">super_orthology</span>"/></div>
4438 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4439 <span class="scTag">value</span>="<span class="scContent">paralogy</span>"/></div>
4440 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4441 <span class="scTag">value</span>="<span class="scContent">ultra_paralogy</span>"/></div>
4442 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4443 <span class="scTag">value</span>="<span class="scContent">xenology</span>"/></div>
4444 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4445 <span class="scTag">value</span>="<span class="scContent">unknown</span>"/></div>
4446 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4447 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
4449 <script type="text/javascript">
4451 setState('h519911868_scbox', false);
4455 <div style="text-align: right; clear: both;">
4456 <a href="#top">top</a>
4459 <h3>Simple Type: <a name="h712147427" class="name">TaxonomyCode</a>
4461 <table class="hierarchy">
4463 <th>Super-types:</th>
4466 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>TaxonomyCode</strong> (by restriction)</td>
4473 <table class="properties">
4476 <td>TaxonomyCode</td>
4479 <th>Used by (from the same schema document)</th>
4480 <td>Complex Type <b>
4481 <a href="#h888650454">Taxonomy</a>
4489 <li>Base XSD Type: token</li>
4493 <em>pattern</em> = [a-zA-Z0-9_]{2,20}</li>
4498 <div class="sample box">
4500 <input type="button" id="h712147427_diagram_button" class="control"
4501 onclick="switchState('h712147427_diagram'); return false;"
4502 style="display: none"/>
4503 <span class="caption">Diagram</span>
4505 <div id="h712147427_diagram" class="contents">
4506 <img usemap="#h516707748" src="schemaDiagrams/h516707748.png"/>
4508 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h516707748.map--><map name="h516707748">
4511 <script type="text/javascript">
4513 setState('h712147427_diagram', true);
4517 <div class="schemaComponent box">
4519 <input type="button" id="h712147427_scbox_button" class="control"
4520 onclick="switchState('h712147427_scbox'); return false;"
4521 style="display: none"/>
4522 <span class="caption">Schema Component Representation</span>
4524 <div id="h712147427_scbox" class="contents">
4525 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4526 <span class="scTag">name</span>="<span class="scContent">TaxonomyCode</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4527 <span class="scTag">base</span>="<span class="scContent">
4529 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4530 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:pattern</span>
4531 <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]{2,20}</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
4533 <script type="text/javascript">
4535 setState('h712147427_scbox', false);
4539 <div style="text-align: right; clear: both;">
4540 <a href="#top">top</a>
4543 <h3>Simple Type: <a name="h577349652" class="name">id_ref</a>
4545 <table class="hierarchy">
4547 <th>Super-types:</th>
4550 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span> < <strong>id_ref</strong> (by restriction)</td>
4557 <table class="properties">
4563 <th>Used by (from the same schema document)</th>
4564 <td>Complex Type <b>
4565 <a href="#h-494260170">Custom</a>
4566 </b>, Complex Type <b>
4567 <a href="#h-802965662">SequenceRelation</a>
4568 </b>, Complex Type <b>
4569 <a href="#h-802965662">SequenceRelation</a>
4570 </b>, Complex Type <b>
4571 <a href="#h192331856">CladeRelation</a>
4572 </b>, Complex Type <b>
4573 <a href="#h192331856">CladeRelation</a>
4581 <li>Base XSD Type: IDREF</li>
4586 <div class="sample box">
4588 <input type="button" id="h577349652_diagram_button" class="control"
4589 onclick="switchState('h577349652_diagram'); return false;"
4590 style="display: none"/>
4591 <span class="caption">Diagram</span>
4593 <div id="h577349652_diagram" class="contents">
4594 <img usemap="#h813803539" src="schemaDiagrams/h813803539.png"/>
4596 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h813803539.map--><map name="h813803539">
4599 <script type="text/javascript">
4601 setState('h577349652_diagram', true);
4605 <div class="schemaComponent box">
4607 <input type="button" id="h577349652_scbox_button" class="control"
4608 onclick="switchState('h577349652_scbox'); return false;"
4609 style="display: none"/>
4610 <span class="caption">Schema Component Representation</span>
4612 <div id="h577349652_scbox" class="contents">
4613 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4614 <span class="scTag">name</span>="<span class="scContent">id_ref</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4615 <span class="scTag">base</span>="<span class="scContent">
4617 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span>
4618 </span>"/></div></<span class="scTag">xs:simpleType</span>></div>
4620 <script type="text/javascript">
4622 setState('h577349652_scbox', false);
4626 <div style="text-align: right; clear: both;">
4627 <a href="#top">top</a>
4630 <h3>Simple Type: <a name="h-1482113798" class="name">id_source</a>
4632 <table class="hierarchy">
4634 <th>Super-types:</th>
4637 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span> < <strong>id_source</strong> (by restriction)</td>
4644 <table class="properties">
4650 <th>Used by (from the same schema document)</th>
4651 <td>Complex Type <b>
4652 <a href="#h-1124608460">Clade</a>
4653 </b>, Complex Type <b>
4654 <a href="#h-1794244794">Sequence</a>
4662 <li>Base XSD Type: ID</li>
4667 <div class="sample box">
4669 <input type="button" id="h-1482113798_diagram_button" class="control"
4670 onclick="switchState('h-1482113798_diagram'); return false;"
4671 style="display: none"/>
4672 <span class="caption">Diagram</span>
4674 <div id="h-1482113798_diagram" class="contents">
4675 <img usemap="#h123518701" src="schemaDiagrams/h123518701.png"/>
4677 Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/docs/phyloXML//schemaDiagrams/h123518701.map--><map name="h123518701">
4680 <script type="text/javascript">
4682 setState('h-1482113798_diagram', true);
4686 <div class="schemaComponent box">
4688 <input type="button" id="h-1482113798_scbox_button" class="control"
4689 onclick="switchState('h-1482113798_scbox'); return false;"
4690 style="display: none"/>
4691 <span class="caption">Schema Component Representation</span>
4693 <div id="h-1482113798_scbox" class="contents">
4694 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4695 <span class="scTag">name</span>="<span class="scContent">id_source</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4696 <span class="scTag">base</span>="<span class="scContent">
4698 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span>
4699 </span>"/></div></<span class="scTag">xs:simpleType</span>></div>
4701 <script type="text/javascript">
4703 setState('h-1482113798_scbox', false);
4707 <div style="text-align: right; clear: both;">
4708 <a href="#top">top</a>
4713 <a name="Legend">Legend</a>
4715 <div style="float: left; width: 15em;">
4716 <h3 style="margin-bottom: 0px;">Complex Type:</h3>
4717 <div class="hint" style="margin-left: 0em;">Schema Component Type</div>
4719 <div style="float: left; width: 15em;">
4720 <h3 style="margin-bottom: 0px;">
4721 <span class="name">AusAddress</span>
4723 <div class="hint" style="margin-left: 0em;">Schema Component Name</div>
4725 <table class="hierarchy" style="clear : both">
4727 <th>Super-types:</th>
4729 <span class="type" style="color: #0000FF; text-decoration:underline;">Address</span> < <span class="current">AusAddress</span> (by extension)</td>
4736 <span class="type" style="color: #0000FF; text-decoration:underline;">QLDAddress</span> (by restriction)</li>
4741 <div class="hint">If this schema component is a type definition, its type hierarchy is shown in a gray-bordered box.</div>
4742 <table class="properties">
4749 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4754 <div class="hint">The table above displays the properties of this schema component.</div>
4755 <div class="sample box">
4757 <span class="caption">XML Instance Representation</span>
4759 <div class="contents">
4760 <span style="margin-left: 0em"><...</span>
4761 <span class="newFields">
4762 <span> country="<span class="fixed">Australia</span>"</span>
4764 <span style="margin-left: 1.5em" class="inherited"><unitNo> <span class="type">string</span> </unitNo> <span class="occurs">[0..1]</span>
4767 <span style="margin-left: 1.5em" class="inherited"><houseNo> <span class="type">string</span> </houseNo> <span class="occurs">[1]</span>
4770 <span style="margin-left: 1.5em" class="inherited"><street> <span class="type">string</span> </street> <span class="occurs">[1]</span>
4773 <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Choice' in glossary" href="#term_Choice">Choice</a>
4774 <span class="occurs">[1]</span>
4777 <span style="margin-left: 3em" class="inherited"><city> <span class="type">string</span> </city> <span class="occurs">[1]</span>
4780 <span style="margin-left: 3em" class="inherited"><town> <span class="type">string</span> </town> <span class="occurs">[1]</span>
4783 <span class="group" style="margin-left: 1.5em">End Choice</span>
4785 <span class="newFields">
4786 <span style="margin-left: 1.5em"><state> <span class="type" style="text-decoration:underline;">AusStates</span> </state> <span class="occurs">[1]</span>
4789 <span style="margin-left: 1.5em"><postcode> <span class="constraint">string <<<em>pattern</em> = [1-9][0-9]{3}>></span> </postcode> <span class="occurs">[1]</span>
4790 <a href="javascript:void(0)" title="View Documentation" class="documentation"
4791 onclick="docArray = new Array('Post code must be a four-digit number.'); viewDocumentation('Element', 'postcode', docArray);">?</a>
4795 <span style="margin-left: 0em"></...></span>
4800 <p>The XML Instance Representation table above shows the schema component's content as an XML instance.</p>
4802 <li>The minimum and maximum occurrence of elements and attributes are provided in square brackets, e.g. [0..1].</li>
4803 <li>Model group information are shown in gray, e.g. Start Choice ... End Choice.</li>
4804 <li>For type derivations, the elements and attributes that have been added to or changed from the base type's content are shown in <span style="font-weight: bold">bold</span>.</li>
4805 <li>If an element/attribute has a fixed value, the fixed value is shown in green, e.g. country="Australia".</li>
4806 <li>Otherwise, the type of the element/attribute is displayed.
4808 <li>If the element/attribute's type is in the schema, a link is provided to it.</li>
4809 <li>For local simple type definitions, the constraints are displayed in angle brackets, e.g. <<<em>pattern</em> = [1-9][0-9]{3}>>.</li>
4812 <li>If a local element/attribute has documentation, it will be displayed in a window that pops up when the question mark inside the attribute or next to the element is clicked, e.g. <postcode>.</li>
4815 <div class="schemaComponent box">
4817 <span class="caption">Schema Component Representation</span>
4819 <div class="contents">
4820 <span style="margin-left: 0em"><<span class="scTag">complexType</span>
4821 <span class="scTag">name</span>="<span class="scContent">AusAddress</span>"></span>
4823 <span style="margin-left: 1.5em"><<span class="scTag">complexContent</span>></span>
4825 <span style="margin-left: 3em"><<span class="scTag">extension</span>
4826 <span class="scTag">base</span>="<span class="scContent">
4827 <span class="type" style="text-decoration:underline;">Address</span>
4830 <span style="margin-left: 4.5em"><<span class="scTag">sequence</span>></span>
4832 <span style="margin-left: 6em"><<span class="scTag">element</span>
4833 <span class="scTag">name</span>="<span class="scContent">state</span>" <span class="scTag">type</span>="<span class="scContent">
4834 <span class="type" style="text-decoration:underline;">AusStates</span>
4835 </span>"/></span>
4837 <span style="margin-left: 6em"><<span class="scTag">element</span>
4838 <span class="scTag">name</span>="<span class="scContent">postcode</span>"></span>
4840 <span style="margin-left: 7.5em"><<span class="scTag">simpleType</span>></span>
4842 <span style="margin-left: 9em"><<span class="scTag">restriction</span>
4843 <span class="scTag">base</span>="<span class="scContent">
4844 <span class="type">string</span>
4847 <span style="margin-left: 10.5em"><<span class="scTag">pattern</span>
4848 <span class="scTag">value</span>="<span class="scContent">[1-9][0-9]{3}</span>"/></span>
4850 <span style="margin-left: 9em"></<span class="scTag">restriction</span>></span>
4852 <span style="margin-left: 7.5em"></<span class="scTag">simpleType</span>></span>
4854 <span style="margin-left: 6em"></<span class="scTag">element</span>></span>
4856 <span style="margin-left: 4.5em"></<span class="scTag">sequence</span>></span>
4858 <span style="margin-left: 4.5em"><<span class="scTag">attribute</span>
4859 <span class="scTag">name</span>="<span class="scContent">country</span>" <span class="scTag">type</span>="<span class="scContent">
4860 <span class="type">string</span>
4861 </span>" <span class="scTag">fixed</span>="<span class="scContent">Australia</span>"/></span>
4863 <span style="margin-left: 3em"></<span class="scTag">extension</span>></span>
4865 <span style="margin-left: 1.5em"></<span class="scTag">complexContent</span>></span>
4867 <span style="margin-left: 0em"></<span class="scTag">complexType</span>></span>
4871 <div class="hint">The Schema Component Representation table above displays the underlying XML representation of the schema component. (Annotations are not shown.)</div>
4872 <div style="text-align: right; clear: both;">
4873 <a href="#top">top</a>
4879 <a name="Glossary">Glossary</a>
4882 <span class="glossaryTerm">
4883 <a name="term_Abstract">Abstract</a>
4884 </span>(Applies to complex type definitions and element declarations). An abstract element or complex type cannot used to validate an element instance. If there is a reference to an abstract element, only element declarations that can substitute the abstract element can be used to validate the instance. For references to abstract type definitions, only derived types can be used.</p>
4886 <span class="glossaryTerm">
4887 <a name="term_All">All Model Group</a>
4888 </span>Child elements can be provided <em>in any order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-all"
4889 href="http://www.w3.org/TR/xmlschema-1/#element-all">http://www.w3.org/TR/xmlschema-1/#element-all</a>.</p>
4891 <span class="glossaryTerm">
4892 <a name="term_Choice">Choice Model Group</a>
4894 <em>Only one</em> from the list of child elements and model groups can be provided in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-choice"
4895 href="http://www.w3.org/TR/xmlschema-1/#element-choice">http://www.w3.org/TR/xmlschema-1/#element-choice</a>.</p>
4897 <span class="glossaryTerm">
4898 <a name="term_CollapseWS">Collapse Whitespace Policy</a>
4899 </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32). Then, collapse contiguous sequences of space characters into single space character, and remove leading and trailing space characters.</p>
4901 <span class="glossaryTerm">
4902 <a name="term_ElemBlock">Disallowed Substitutions</a>
4903 </span>(Applies to element declarations). If <em>substitution</em> is specified, then <a title="Look up 'substitution group' in glossary"
4904 href="phyloxml.xsd.html#term_SubGroup">substitution group</a> members cannot be used in place of the given element declaration to validate element instances. If <em>derivation methods</em>, e.g. extension, restriction, are specified, then the given element declaration will not validate element instances that have types derived from the element declaration's type using the specified derivation methods. Normally, element instances can override their declaration's type by specifying an <code>xsi:type</code> attribute.</p>
4906 <span class="glossaryTerm">
4907 <a name="term_Key">Key Constraint</a>
4908 </span>Like <a title="Look up 'Uniqueness Constraint' in glossary"
4909 href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>, but additionally requires that the specified value(s) must be provided. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
4910 href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
4912 <span class="glossaryTerm">
4913 <a name="term_KeyRef">Key Reference Constraint</a>
4914 </span>Ensures that the specified value(s) must match value(s) from a <a title="Look up 'Key Constraint' in glossary" href="phyloxml.xsd.html#term_Key">Key Constraint</a> or <a title="Look up 'Uniqueness Constraint' in glossary"
4915 href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
4916 href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
4918 <span class="glossaryTerm">
4919 <a name="term_ModelGroup">Model Group</a>
4920 </span>Groups together element content, specifying the order in which the element content can occur and the number of times the group of element content may be repeated. See: <a title="http://www.w3.org/TR/xmlschema-1/#Model_Groups"
4921 href="http://www.w3.org/TR/xmlschema-1/#Model_Groups">http://www.w3.org/TR/xmlschema-1/#Model_Groups</a>.</p>
4923 <span class="glossaryTerm">
4924 <a name="term_Nillable">Nillable</a>
4925 </span>(Applies to element declarations). If an element declaration is nillable, instances can use the <code>xsi:nil</code> attribute. The <code>xsi:nil</code> attribute is the boolean attribute, <em>nil</em>, from the <em>http://www.w3.org/2001/XMLSchema-instance</em> namespace. If an element instance has an <code>xsi:nil</code> attribute set to true, it can be left empty, even though its element declaration may have required content.</p>
4927 <span class="glossaryTerm">
4928 <a name="term_Notation">Notation</a>
4929 </span>A notation is used to identify the format of a piece of data. Values of elements and attributes that are of type, NOTATION, must come from the names of declared notations. See: <a title="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations"
4930 href="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations">http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations</a>.</p>
4932 <span class="glossaryTerm">
4933 <a name="term_PreserveWS">Preserve Whitespace Policy</a>
4934 </span>Preserve whitespaces exactly as they appear in instances.</p>
4936 <span class="glossaryTerm">
4937 <a name="term_TypeFinal">Prohibited Derivations</a>
4938 </span>(Applies to type definitions). Derivation methods that cannot be used to create sub-types from a given type definition.</p>
4940 <span class="glossaryTerm">
4941 <a name="term_TypeBlock">Prohibited Substitutions</a>
4942 </span>(Applies to complex type definitions). Prevents sub-types that have been derived using the specified derivation methods from validating element instances in place of the given type definition.</p>
4944 <span class="glossaryTerm">
4945 <a name="term_ReplaceWS">Replace Whitespace Policy</a>
4946 </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32).</p>
4948 <span class="glossaryTerm">
4949 <a name="term_Sequence">Sequence Model Group</a>
4950 </span>Child elements and model groups must be provided <em>in the specified order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-sequence"
4951 href="http://www.w3.org/TR/xmlschema-1/#element-sequence">http://www.w3.org/TR/xmlschema-1/#element-sequence</a>.</p>
4953 <span class="glossaryTerm">
4954 <a name="term_SubGroup">Substitution Group</a>
4955 </span>Elements that are <em>members</em> of a substitution group can be used wherever the <em>head</em> element of the substitution group is referenced.</p>
4957 <span class="glossaryTerm">
4958 <a name="term_ElemFinal">Substitution Group Exclusions</a>
4959 </span>(Applies to element declarations). Prohibits element declarations from nominating themselves as being able to substitute a given element declaration, if they have types that are derived from the original element's type using the specified derivation methods.</p>
4961 <span class="glossaryTerm">
4962 <a name="term_TargetNS">Target Namespace</a>
4963 </span>The target namespace identifies the namespace that components in this schema belongs to. If no target namespace is provided, then the schema components do not belong to any namespace.</p>
4965 <span class="glossaryTerm">
4966 <a name="term_Unique">Uniqueness Constraint</a>
4967 </span>Ensures uniqueness of an element/attribute value, or a combination of values, within a specified scope. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
4968 href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
4969 <div style="text-align: right; clear: both;">
4970 <a href="#top">top</a>
4974 <p class="footer">Generated by <a href="http://www.oxygenxml.com"><oXygen/> XML Editor</a> using a modified version of <a href="http://titanium.dstc.edu.au/xml/xs3p">xs3p</a> that adds schema diagrams and chunking support. Last modified: <script type="text/javascript">
4976 document.write(document.lastModified);