forester/phyloxml/docs/version_1.00/phyloxml.xsd.html

   1
   2 <!DOCTYPE html
   3   PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
   4 <html xmlns="http://www.w3.org/1999/xhtml">
   5    <head>
   6       <title>Documentation for phyloXML 1.00 - phyloxml.xsd</title>
   7       <meta http-equiv="Content-Type" content="text/xml; charset=UTF-8"/>
   8       <style type="text/css">
   9 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
  10 /* More-configurable styles */
  11
  12 /******** General ********/
  13
  14 /* Document body */
  15 body {
  16    color: Black;
  17    background-color: White;
  18    font-family: Arial, sans-serif;
  19    font-size: 10pt;
  20 }
  21
  22 /* Horizontal rules */
  23 hr {
  24    color: black;
  25 }
  26 /* Document title */
  27 h1 {
  28    font-size: 18pt;
  29    letter-spacing: 2px;
  30    border-bottom: 1px #ccc solid;
  31    padding-top: 5px;
  32    padding-bottom: 5px;
  33 }
  34 /* Main section headers */
  35 h2 {
  36    font-size: 14pt;
  37    letter-spacing: 1px;
  38 }
  39 /* Sub-section headers */
  40 h3, h3 a, h3 span {
  41    font-size: 12pt;
  42    font-weight: bold;
  43    color: black;
  44 }
  45 /* Table displaying the properties of the schema components or the
  46    schema document itself */
  47 table.properties th, table.properties th a {
  48    color: black;
  49    background-color: #F99; /* Pink */
  50 }
  51 table.properties td {
  52    background-color: #eee; /* Gray */
  53 }
  54
  55 img{
  56  border: 0;
  57 }
  58
  59 /********* Documentation style *************/
  60 p.documentation {
  61    color:black;
  62    font-style:italic;
  63          background-color: #EEEEFF;
  64          border: 1px solid #DDDDFF;
  65          padding-top: 1px;
  66          margin-right: 30px;
  67          margin-top: 1px;
  68 }
  69
  70
  71 /******** Table of Contents Section ********/
  72
  73 /* Controls for switching between printing and viewing modes */
  74 div#printerControls {
  75    color: #963; /* Orange-brown */
  76 }
  77 /* Controls that can collapse or expand all XML Instance
  78    Representation and Schema Component Representation boxes */
  79 div#globalControls {
  80    border: 2px solid #999;
  81 }
  82
  83
  84 /******** Schema Document Properties Section ********/
  85
  86 /* Table displaying the namespaces declared in the schema */
  87 table.namespaces th {
  88    background-color: #ccc;
  89 }
  90 table.namespaces td {
  91    background-color: #eee;
  92 }
  93 /* Target namespace of the schema */
  94 span.targetNS {
  95    color: #06C;
  96    font-weight: bold;
  97 }
  98
  99
 100 /******** Schema Components' Sections ********/
 101
 102 /* Name of schema component */
 103 .name {
 104    color: #F93; /* Orange */
 105 }
 106
 107 /* Hierarchy table */
 108 table.hierarchy {
 109    border: 2px solid #999; /* Gray */
 110 }
 111
 112 /* XML Instance Representation table */
 113 div.sample div.contents {
 114    border: 1px dashed black;
 115 }
 116
 117
 118 /* Schema Component Representation table */
 119 div.schemaComponent div.contents {
 120    border: 2px black solid;
 121 }
 122
 123
 124 /******** Glossary Section ********/
 125
 126 /* Glossary Terms */
 127 .glossaryTerm {
 128    color: #036; /* Blue */
 129 }
 130
 131
 132 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
 133 /* Printer-version styles */
 134
 135 @media print {
 136
 137 /* Ensures that controls are hidden when printing */
 138 div#printerControls {
 139    visibility: hidden;
 140 }
 141 div#globalControls {
 142    visibility: hidden;
 143 }
 144 #legend {
 145    display: none;
 146 }
 147 #legendTOC {
 148    display: none;
 149 }
 150 #glossary {
 151    display: none;
 152 }
 153 #glossaryTOC {
 154    display: none;
 155 }
 156
 157 }
 158
 159 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
 160 /* Base styles */
 161
 162 /******** General ********/
 163
 164 /* Unordered lists */
 165 ul {
 166    margin-left: 1.5em;
 167    margin-bottom: 0em;
 168 }
 169 /* Tables */
 170 table {
 171    margin-top: 10px;
 172    margin-bottom: 10px;
 173    margin-left: 2px;
 174    margin-right: 2px;
 175 }
 176 table th, table td {
 177    font-size: 10pt;
 178    vertical-align: top;
 179    padding-top: 3px;
 180    padding-bottom: 3px;
 181    padding-left: 10px;
 182    padding-right: 10px;
 183 }
 184 table th {
 185    font-weight: bold;
 186    text-align: left;
 187 }
 188 /* Table displaying the properties of the schema components or the
 189    schema document itself */
 190 table.properties {
 191    width: 90%;
 192 }
 193 table.properties th {
 194    width: 30%;
 195 }
 196 /* Boxes that can make its content appear and disappear*/
 197 div.box {
 198    margin: 1em;
 199 }
 200    /* Box caption */
 201 div.box span.caption {
 202    font-weight: bold;
 203 }
 204    /* Button to open and close the box */
 205 div.box input.control {
 206    width: 1.4em;
 207    height: 1.4em;
 208    text-align: center;
 209    vertical-align: middle;
 210    font-size: 11pt;
 211 }
 212    /* Box contents */
 213 div.box div.contents {
 214    margin-top: 3px;
 215 }
 216
 217
 218 /******** Table of Contents Section ********/
 219
 220 /* Controls for switching between printing and viewing modes */
 221 div#printerControls {
 222    white-space: nowrap;
 223    font-weight: bold;
 224    padding: 5px;
 225    margin: 5px;
 226 }
 227 /* Controls that can collapse or expand all XML Instance
 228    Representation and Schema Component Representation boxes */
 229 div#globalControls {
 230    padding: 10px;
 231    margin: 5px;
 232 }
 233
 234
 235 /******** Schema Document Properties Section ********/
 236
 237 /* Table displaying the namespaces declared in the schema */
 238 table.namespaces th {
 239 }
 240 table.namespaces td {
 241 }
 242 /* Target namespace of the schema */
 243 span.targetNS {
 244 }
 245
 246
 247 /******** Schema Components' Sections ********/
 248
 249 /* Name of schema component */
 250 .name {
 251 }
 252
 253 /* Hierarchy table */
 254 table.hierarchy {
 255    width: 90%;
 256 }
 257 table.hierarchy th {
 258    font-weight: normal;
 259    font-style: italic;
 260    width: 20%;
 261 }
 262 table.hierarchy th, table.hierarchy td {
 263    padding: 5px;
 264 }
 265
 266 /* XML Instance Representation table */
 267 div.sample {
 268    width: 90%;
 269 }
 270 div.sample div.contents {
 271    padding: 5px;
 272    font-family: Courier New, sans-serif;
 273    font-size: 10pt;
 274 }
 275    /* Normal elements and attributes */
 276 div.sample div.contents, div.sample div.contents a {
 277    color: black;
 278 }
 279    /* Group Headers */
 280 div.sample div.contents .group, div.sample div.contents .group a {
 281    color: #999; /* Light gray */
 282 }
 283    /* Type Information */
 284 div.sample div.contents .type, div.sample div.contents .type a {
 285    color: #999; /* Light gray */
 286 }
 287    /* Occurrence Information */
 288 div.sample div.contents .occurs, div.sample div.contents .occurs a {
 289    color: #999; /* Light gray */
 290 }
 291    /* Fixed values */
 292 div.sample div.contents .fixed {
 293    color: #063; /* Green */
 294    font-weight: bold;
 295 }
 296    /* Simple type constraints */
 297 div.sample div.contents .constraint, div.sample div.contents .constraint a {
 298    color: #999; /* Light gray */
 299 }
 300    /* Elements and attributes inherited from base type */
 301 div.sample div.contents .inherited, div.sample div.contents .inherited a {
 302    color: #666; /* Dark gray */
 303 }
 304    /* Elements and attributes added to or changed from base type */
 305 div.sample div.contents .newFields {
 306    font-weight: bold;
 307 }
 308    /* Other type of information */
 309 div.sample div.contents .other, div.sample div.contents .other a {
 310    color: #369; /* Blue */
 311    font-style: italic;
 312 }
 313    /* Link to open up window displaying documentation */
 314 div.sample div.contents a.documentation {
 315    text-decoration: none;
 316    padding-left: 3px;
 317    padding-right: 3px;
 318    padding-top: 0px;
 319    padding-bottom: 0px;
 320    font-weight: bold;
 321    font-size: 11pt;
 322    background-color: #FFD;
 323    color: #069;
 324 }
 325    /* Invert colors when hovering over link to open up window
 326       displaying documentation */
 327 div.sample div.contents a.documentation:hover {
 328    color: #FFD;
 329    background-color: #069;
 330 }
 331
 332 /* Schema Component Representation table */
 333 div.schemaComponent {
 334    width: 90%;
 335 }
 336 div.schemaComponent div.contents {
 337    font-family: Courier New, sans-serif;
 338    font-size: 10pt;
 339    padding: 5px;
 340 }
 341    /* Syntax characters */
 342 div.schemaComponent div.contents {
 343    color: #00f; /* blue */
 344 }
 345    /* Element and attribute tags */
 346 div.schemaComponent div.contents .scTag {
 347    color: #933; /* maroon */
 348 }
 349    /* Element and attribute content */
 350 div.schemaComponent div.contents .scContent, div.schemaComponent div.contents .scContent a {
 351    color: black;
 352    font-weight: bold;
 353 }
 354    /* Comments */
 355 div.schemaComponent div.contents .comment {
 356    color: #999; /* Light gray */
 357 }
 358
 359 /******** Legend Section ********/
 360
 361 div#legend table, div#legend div {
 362    margin-bottom: 3px;
 363 }
 364 div#legend div.hint {
 365    color: #999; /* Light gray */
 366    width: 90%;
 367    margin-left: 1em;
 368    margin-bottom: 2em;
 369 }
 370
 371
 372 /******** Glossary Section ********/
 373
 374 /* Glossary Terms */
 375 .glossaryTerm {
 376    font-weight: bold;
 377 }
 378
 379 /********* Details *************/
 380 .detailsToc {
 381   color: #666; /* Light gray */
 382 }
 383
 384 .details {
 385   color: #666; /* Light gray */
 386   text-decoration:none;
 387 }
 388
 389 /******** Footer ********/
 390
 391 .footer {
 392    font-size: 8pt;
 393 }
 394 </style>
 395       <script type="text/javascript">
 396 <!--
 397           /* IDs of XML Instance Representation boxes */
 398 var xiBoxes = new Array('h270234806_xibox', 'h155831896_xibox', 'h535307528_xibox', 'h-1124608460_xibox', 'h888650454_xibox', 'h712147427_xibox', 'h518348337_xibox', 'h-1794244794_xibox', 'h-213750342_xibox', 'h935679102_xibox', 'h1408823200_xibox', 'h-788356801_xibox', 'h259010940_xibox', 'h-1389097534_xibox', 'h-436501026_xibox', 'h1358103055_xibox', 'h-1514309680_xibox', 'h1535743041_xibox', 'h401516646_xibox', 'h-676028775_xibox', 'h917087604_xibox', 'h158033242_xibox', 'h-675984882_xibox', 'h-763252414_xibox', 'h-54338178_xibox', 'h-676012345_xibox', 'h-993584945_xibox', 'h-853091232_xibox', 'h-979596407_xibox', 'h-1112505301_xibox', 'h332351765_xibox', 'h517931443_xibox', 'h-1691165380_xibox', 'h-802965662_xibox', 'h519911868_xibox', 'h192331856_xibox', 'h-1482113798_xibox', 'h577349652_xibox');
 399 /* IDs of diagram boxes */
 400 var diagramBoxes = new Array('h270234806_diagram', 'h155831896_diagram', 'h535307528_diagram', 'h-1124608460_diagram', 'h888650454_diagram', 'h712147427_diagram', 'h518348337_diagram', 'h-1794244794_diagram', 'h-213750342_diagram', 'h935679102_diagram', 'h1408823200_diagram', 'h-788356801_diagram', 'h259010940_diagram', 'h-1389097534_diagram', 'h-436501026_diagram', 'h1358103055_diagram', 'h-1514309680_diagram', 'h1535743041_diagram', 'h401516646_diagram', 'h-676028775_diagram', 'h917087604_diagram', 'h158033242_diagram', 'h-675984882_diagram', 'h-763252414_diagram', 'h-54338178_diagram', 'h-676012345_diagram', 'h-993584945_diagram', 'h-853091232_diagram', 'h-979596407_diagram', 'h-1112505301_diagram', 'h332351765_diagram', 'h517931443_diagram', 'h-1691165380_diagram', 'h-802965662_diagram', 'h519911868_diagram', 'h192331856_diagram', 'h-1482113798_diagram', 'h577349652_diagram');
 401 /* IDs of logical diagram boxes */
 402 var logicalDiagramBoxes = new Array('h270234806_logicalDiagram');
 403 /* IDs of Schema Component Representation boxes */
 404 var scBoxes = new Array('schema_scbox', 'h270234806_scbox', 'h155831896_scbox', 'h535307528_scbox', 'h-1124608460_scbox', 'h888650454_scbox', 'h712147427_scbox', 'h518348337_scbox', 'h-1794244794_scbox', 'h-213750342_scbox', 'h935679102_scbox', 'h1408823200_scbox', 'h-788356801_scbox', 'h259010940_scbox', 'h-1389097534_scbox', 'h-436501026_scbox', 'h1358103055_scbox', 'h-1514309680_scbox', 'h1535743041_scbox', 'h401516646_scbox', 'h-676028775_scbox', 'h917087604_scbox', 'h158033242_scbox', 'h-675984882_scbox', 'h-763252414_scbox', 'h-54338178_scbox', 'h-676012345_scbox', 'h-993584945_scbox', 'h-853091232_scbox', 'h-979596407_scbox', 'h-1112505301_scbox', 'h332351765_scbox', 'h517931443_scbox', 'h-1691165380_scbox', 'h-802965662_scbox', 'h519911868_scbox', 'h192331856_scbox', 'h-1482113798_scbox', 'h577349652_scbox');
 405
 406 /**
 407  * Can get the ID of the button controlling
 408  * a collapseable box by concatenating
 409  * this string onto the ID of the box itself.
 410  */
 411 var B_SFIX = "_button";
 412
 413
 414 /**
 415  * Returns an element in the current HTML document.
 416  *
 417  * @param elementID Identifier of HTML element
 418  * @return               HTML element object
 419  */
 420 function getElementObject(elementID) {
 421     var elemObj = null;
 422     if (document.getElementById) {
 423         elemObj = document.getElementById(elementID);
 424     }
 425     return elemObj;
 426 }
 427
 428 /**
 429  * Closes a collapseable box.
 430  *
 431  * @param boxObj       Collapseable box
 432  * @param buttonObj Button controlling box
 433  */
 434 function closeBox(boxObj, buttonObj) {
 435   if (boxObj == null || buttonObj == null) {
 436      // Box or button not found
 437   } else {
 438      // Change 'display' CSS property of box
 439      boxObj.style.display="none";
 440
 441      // Change text of button
 442      if (boxObj.style.display=="none") {
 443         buttonObj.value=" + ";
 444      }
 445   }
 446 }
 447
 448 /**
 449  * Opens a collapseable box.
 450  *
 451  * @param boxObj       Collapseable box
 452  * @param buttonObj Button controlling box
 453  */
 454 function openBox(boxObj, buttonObj) {
 455   if (boxObj == null || buttonObj == null) {
 456      // Box or button not found
 457   } else {
 458      // Change 'display' CSS property of box
 459      boxObj.style.display="block";
 460
 461      // Change text of button
 462      if (boxObj.style.display=="block") {
 463         buttonObj.value=" - ";
 464      }
 465   }
 466 }
 467
 468 /**
 469  * Sets the state of a collapseable box.
 470  *
 471  * @param boxID Identifier of box
 472  * @param open If true, box is "opened",
 473  *             Otherwise, box is "closed".
 474  */
 475 function setState(boxID, open) {
 476   var boxObj = getElementObject(boxID);
 477   var buttonObj = getElementObject(boxID+B_SFIX);
 478   if (boxObj == null || buttonObj == null) {
 479      // Box or button not found
 480   } else if (open) {
 481      openBox(boxObj, buttonObj);
 482      // Make button visible
 483      buttonObj.style.display="inline";
 484   } else {
 485      closeBox(boxObj, buttonObj);
 486      // Make button visible
 487      buttonObj.style.display="inline";
 488   }
 489 }
 490
 491 /**
 492  * Switches the state of a collapseable box, e.g.
 493  * if it's opened, it'll be closed, and vice versa.
 494  *
 495  * @param boxID Identifier of box
 496  */
 497 function switchState(boxID) {
 498   var boxObj = getElementObject(boxID);
 499   var buttonObj = getElementObject(boxID+B_SFIX);
 500   if (boxObj == null || buttonObj == null) {
 501      // Box or button not found
 502   } else if (boxObj.style.display=="none") {
 503      // Box is closed, so open it
 504      openBox(boxObj, buttonObj);
 505   } else if (boxObj.style.display=="block") {
 506      // Box is opened, so close it
 507      closeBox(boxObj, buttonObj);
 508   }
 509 }
 510
 511 /**
 512  * Closes all boxes in a given list.
 513  *
 514  * @param boxList Array of box IDs
 515  */
 516 function collapseAll(boxList) {
 517   var idx;
 518   for (idx = 0; idx < boxList.length; idx++) {
 519      var boxObj = getElementObject(boxList[idx]);
 520      var buttonObj = getElementObject(boxList[idx]+B_SFIX);
 521      closeBox(boxObj, buttonObj);
 522   }
 523 }
 524
 525 /**
 526  * Open all boxes in a given list.
 527  *
 528  * @param boxList Array of box IDs
 529  */
 530 function expandAll(boxList) {
 531   var idx;
 532   for (idx = 0; idx < boxList.length; idx++) {
 533      var boxObj = getElementObject(boxList[idx]);
 534      var buttonObj = getElementObject(boxList[idx]+B_SFIX);
 535      openBox(boxObj, buttonObj);
 536   }
 537 }
 538
 539 /**
 540  * Makes all the control buttons of boxes appear.
 541  *
 542  * @param boxList Array of box IDs
 543  */
 544 function viewControlButtons(boxList) {
 545     var idx;
 546     for (idx = 0; idx < boxList.length; idx++) {
 547         buttonObj = getElementObject(boxList[idx]+B_SFIX);
 548         if (buttonObj != null) {
 549             buttonObj.style.display = "inline";
 550         }
 551     }
 552 }
 553
 554 /**
 555  * Makes all the control buttons of boxes disappear.
 556  *
 557  * @param boxList Array of box IDs
 558  */
 559 function hideControlButtons(boxList) {
 560     var idx;
 561     for (idx = 0; idx < boxList.length; idx++) {
 562         buttonObj = getElementObject(boxList[idx]+B_SFIX);
 563         if (buttonObj != null) {
 564             buttonObj.style.display = "none";
 565         }
 566     }
 567 }
 568
 569 /**
 570  * Sets the page for either printing mode
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 725    </head>
 726    <body>
 727       <h1>
 728          <a name="top">Documentation for phyloXML 1.00</a>
 729       </h1>
 730       <div style="float: right;">
 731          <div id="printerControls" style="display:none;">
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 744             <strong>Logical Diagram:</strong>
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 747             <br/>
 748             <br/>
 749             <strong>XML Instance Representation:</strong>
 750             <br/>
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 752             <br/>
 753             <br/>
 754             <strong>Diagram:</strong>
 755             <br/>
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 757             <br/>
 758             <br/>
 759             <strong>Schema Component Representation:</strong>
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 773       </div>
 774       <h2>Table of Contents</h2>
 775       <ul>
 776          <li>
 777             <a href="#SchemaProperties">Schema Document Properties</a>
 778          </li>
 779          <li>
 780             <a href="#SchemaDeclarations">Global Declarations</a>
 781             <ul>
 782                <li>
 783                   <a href="#h270234806">Element: <strong>phyloxml</strong>
 784                   </a>
 785                </li>
 786             </ul>
 787          </li>
 788          <li>
 789             <a href="#SchemaDefinitions">Global Definitions</a>
 790             <ul>
 791                <li>
 792                   <a href="#h-788356801">Complex Type: <strong>Accession</strong>
 793                   </a>
 794                </li>
 795                <li>
 796                   <a href="#h917087604">Complex Type: <strong>Annotation</strong>
 797                   </a>
 798                </li>
 799                <li>
 800                   <a href="#h1535743041">Complex Type: <strong>BinaryCharacterList</strong>
 801                   </a>
 802                </li>
 803                <li>
 804                   <a href="#h-1514309680">Complex Type: <strong>BinaryCharacters</strong>
 805                   </a>
 806                </li>
 807                <li>
 808                   <a href="#h-1691165380">Complex Type: <strong>BranchColor</strong>
 809                   </a>
 810                </li>
 811                <li>
 812                   <a href="#h-1124608460">Complex Type: <strong>Clade</strong>
 813                   </a>
 814                </li>
 815                <li>
 816                   <a href="#h192331856">Complex Type: <strong>CladeRelation</strong>
 817                   </a>
 818                </li>
 819                <li>
 820                   <a href="#h-993584945">Complex Type: <strong>Confidence</strong>
 821                   </a>
 822                </li>
 823                <li>
 824                   <a href="#h517931443">Complex Type: <strong>Date</strong>
 825                   </a>
 826                </li>
 827                <li>
 828                   <a href="#h-979596407">Complex Type: <strong>Distribution</strong>
 829                   </a>
 830                </li>
 831                <li>
 832                   <a href="#h259010940">Complex Type: <strong>DomainArchitecture</strong>
 833                   </a>
 834                </li>
 835                <li>
 836                   <a href="#h-436501026">Complex Type: <strong>Events</strong>
 837                   </a>
 838                </li>
 839                <li>
 840                   <a href="#h-853091232">Complex Type: <strong>Id</strong>
 841                   </a>
 842                </li>
 843                <li>
 844                   <a href="#h535307528">Complex Type: <strong>Phylogeny</strong>
 845                   </a>
 846                </li>
 847                <li>
 848                   <a href="#h155831896">Complex Type: <strong>Phyloxml</strong>
 849                   </a>
 850                </li>
 851                <li>
 852                   <a href="#h-1112505301">Complex Type: <strong>Point</strong>
 853                   </a>
 854                </li>
 855                <li>
 856                   <a href="#h332351765">Complex Type: <strong>Polygon</strong>
 857                   </a>
 858                </li>
 859                <li>
 860                   <a href="#h158033242">Complex Type: <strong>Property</strong>
 861                   </a>
 862                </li>
 863                <li>
 864                   <a href="#h-1389097534">Complex Type: <strong>ProteinDomain</strong>
 865                   </a>
 866                </li>
 867                <li>
 868                   <a href="#h401516646">Complex Type: <strong>Reference</strong>
 869                   </a>
 870                </li>
 871                <li>
 872                   <a href="#h-1794244794">Complex Type: <strong>Sequence</strong>
 873                   </a>
 874                </li>
 875                <li>
 876                   <a href="#h-802965662">Complex Type: <strong>SequenceRelation</strong>
 877                   </a>
 878                </li>
 879                <li>
 880                   <a href="#h888650454">Complex Type: <strong>Taxonomy</strong>
 881                   </a>
 882                </li>
 883                <li>
 884                   <a href="#h-676012345">Complex Type: <strong>Uri</strong>
 885                   </a>
 886                </li>
 887                <li>
 888                   <a href="#h-763252414">Simple Type: <strong>AppliesTo</strong>
 889                   </a>
 890                </li>
 891                <li>
 892                   <a href="#h-676028775">Simple Type: <strong>Doi</strong>
 893                   </a>
 894                </li>
 895                <li>
 896                   <a href="#h1358103055">Simple Type: <strong>EventType</strong>
 897                   </a>
 898                </li>
 899                <li>
 900                   <a href="#h-213750342">Simple Type: <strong>MolSeq</strong>
 901                   </a>
 902                </li>
 903                <li>
 904                   <a href="#h-54338178">Simple Type: <strong>PropertyDataType</strong>
 905                   </a>
 906                </li>
 907                <li>
 908                   <a href="#h518348337">Simple Type: <strong>Rank</strong>
 909                   </a>
 910                </li>
 911                <li>
 912                   <a href="#h519911868">Simple Type: <strong>SequenceRelationType</strong>
 913                   </a>
 914                </li>
 915                <li>
 916                   <a href="#h935679102">Simple Type: <strong>SequenceSymbol</strong>
 917                   </a>
 918                </li>
 919                <li>
 920                   <a href="#h1408823200">Simple Type: <strong>SequenceType</strong>
 921                   </a>
 922                </li>
 923                <li>
 924                   <a href="#h712147427">Simple Type: <strong>TaxonomyCode</strong>
 925                   </a>
 926                </li>
 927                <li>
 928                   <a href="#h577349652">Simple Type: <strong>id_ref</strong>
 929                   </a>
 930                </li>
 931                <li>
 932                   <a href="#h-1482113798">Simple Type: <strong>id_source</strong>
 933                   </a>
 934                </li>
 935                <li>
 936                   <a href="#h-675984882">Simple Type: <strong>ref</strong>
 937                   </a>
 938                </li>
 939             </ul>
 940          </li>
 941       </ul>
 942       <ul id="legendTOC" style="margin-top: 0em">
 943          <li>
 944             <a href="#Legend">Legend</a>
 945          </li>
 946       </ul>
 947       <ul id="glossaryTOC" style="margin-top: 0em">
 948          <li>
 949             <a href="#Glossary">Glossary</a>
 950          </li>
 951       </ul>
 952       <div style="text-align: right; clear: both;">
 953          <a href="#top">top</a>
 954       </div>
 955       <hr/>
 956       <h2>
 957          <a name="SchemaProperties">Schema Document Properties</a>
 958       </h2>
 959       <table class="properties">
 960          <tr>
 961             <th>
 962                <a title="Look up 'Target Namespace' in glossary"
 963                   href="phyloxml.xsd.html#term_TargetNS">Target Namespace</a>
 964             </th>
 965             <td>
 966                <span class="targetNS">http://www.phyloxml.org</span>
 967             </td>
 968          </tr>
 969          <tr>
 970             <th>Element and Attribute Namespaces</th>
 971             <td>
 972                <ul>
 973                   <li>Global element and attribute declarations belong to this schema's target namespace.</li>
 974                   <li>By default, local element declarations belong to this schema's target namespace.</li>
 975                   <li>By default, local attribute declarations have no namespace.</li>
 976                </ul>
 977             </td>
 978          </tr>
 979          <tr>
 980             <th>Documentation</th>
 981             <td class="documentation"> phyloXML is an XML language to describe phylogenies and associated data. Version: 1.00.
 982          License: LGPL. Copyright (c) 2008-2009 Christian M Zmasek.</td>
 983          </tr>
 984       </table>
 985       <h3>Declared Namespaces</h3>
 986       <table class="namespaces">
 987          <tr>
 988             <th>Prefix</th>
 989             <th>Namespace</th>
 990          </tr>
 991          <tr>
 992             <td>
 993                <a name="ns_xml">xml</a>
 994             </td>
 995             <td>http://www.w3.org/XML/1998/namespace</td>
 996          </tr>
 997          <tr>
 998             <td>
 999                <a name="ns_phy">phy</a>
1000             </td>
1001             <td>
1002                <span class="targetNS">http://www.phyloxml.org</span>
1003             </td>
1004          </tr>
1005          <tr>
1006             <td>
1007                <a name="ns_xs">xs</a>
1008             </td>
1009             <td>http://www.w3.org/2001/XMLSchema</td>
1010          </tr>
1011       </table>
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1015                    onclick="switchState('schema_scbox'); return false;"
1016                    style="display: none"/>
1017             <span class="caption">Schema Component Representation</span>
1018          </div>
1019          <div id="schema_scbox" class="contents">
1020             <div style="margin-left: 0em">&lt;<span class="scTag">xs:schema</span>
1021                <span class="scTag">targetNamespace</span>="<span class="scContent">http://www.phyloxml.org</span>" <span class="scTag">elementFormDefault</span>="<span class="scContent">qualified</span>" <span class="scTag">attributeFormDefault</span>="<span class="scContent">unqualified</span>"&gt;<div class="scContent" style="margin-left: 1.5em">...</div>&lt;/<span class="scTag">xs:schema</span>&gt;</div>
1022          </div>
1023          <script type="text/javascript">
1024 <!--
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1026 // -->
1027 </script>
1028       </div>
1029       <div style="text-align: right; clear: both;">
1030          <a href="#top">top</a>
1031       </div>
1032       <hr/>
1033       <h2>
1034          <a name="SchemaDeclarations">Global Declarations</a>
1035       </h2>
1036       <h3>Element: <a name="h270234806" class="name">phyloxml</a>
1037       </h3>
1038       <table class="properties">
1039          <tr>
1040             <th>Name</th>
1041             <td>phyloxml</td>
1042          </tr>
1043          <tr>
1044             <th>Type</th>
1045             <td>
1046                <span class="type">
1047                   <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phyloxml&#34; type definition." href="#h155831896">Phyloxml</a>
1048                </span>
1049             </td>
1050          </tr>
1051          <tr>
1052             <th>
1053                <a title="Look up 'Nillable' in glossary" href="phyloxml.xsd.html#term_Nillable">Nillable</a>
1054             </th>
1055             <td>no</td>
1056          </tr>
1057          <tr>
1058             <th>
1059                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1060             </th>
1061             <td>no</td>
1062          </tr>
1063       </table>
1064       <div class="sample box">
1065          <div>
1066             <input type="button" id="h270234806_logicalDiagram_button" class="control"
1067                    onclick="switchState('h270234806_logicalDiagram'); return false;"
1068                    style="display: none"/>
1069             <span class="caption">Logical Diagram</span>
1070          </div>
1071          <div id="h270234806_logicalDiagram" class="contents">
1072             <img usemap="#h1900732667" src="schemaDiagrams/h1900732667.png"/>
1073             <!--
1074             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h1900732667.map--><map name="h1900732667">
1075 </map>
1076          </div>
1077          <script type="text/javascript">
1078 <!--
1079           setState('h270234806_logicalDiagram', false);
1080 // -->
1081 </script>
1082       </div>
1083       <div class="sample box">
1084          <div>
1085             <input type="button" id="h270234806_xibox_button" class="control"
1086                    onclick="switchState('h270234806_xibox'); return false;"
1087                    style="display: none"/>
1088             <span class="caption">XML Instance Representation</span>
1089          </div>
1090          <div id="h270234806_xibox" class="contents">
1091             <div style="margin-left: 0em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml&gt; <br/>
1092                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
1093                   <span class="occurs">[1..*]</span>
1094                </span>
1095                <br/>
1096                <div style="margin-left: 3em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="type">
1097                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
1098                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="occurs">[0..*]</span>
1099                </div>
1100                <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1101                </div>
1102                <span class="group" style="margin-left: 1.5em">End Sequence</span>
1103                <br/>&lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml&gt;</div>
1104          </div>
1105          <script type="text/javascript">
1106 <!--
1107           setState('h270234806_xibox', true);
1108 // -->
1109 </script>
1110       </div>
1111       <div class="sample box">
1112          <div>
1113             <input type="button" id="h270234806_diagram_button" class="control"
1114                    onclick="switchState('h270234806_diagram'); return false;"
1115                    style="display: none"/>
1116             <span class="caption">Diagram</span>
1117          </div>
1118          <div id="h270234806_diagram" class="contents">
1119             <img usemap="#h482833585" src="schemaDiagrams/h482833585.png"/>
1120             <!--
1121             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h482833585.map--><map name="h482833585">
1122                <area shape="rect" alt="h535307528" coords="344,10,463,50"
1123                      href="phyloxml.xsd.html#h535307528"/>
1124
1125             </map>
1126          </div>
1127          <script type="text/javascript">
1128 <!--
1129           setState('h270234806_diagram', true);
1130 // -->
1131 </script>
1132       </div>
1133       <div class="schemaComponent box">
1134          <div>
1135             <input type="button" id="h270234806_scbox_button" class="control"
1136                    onclick="switchState('h270234806_scbox'); return false;"
1137                    style="display: none"/>
1138             <span class="caption">Schema Component Representation</span>
1139          </div>
1140          <div id="h270234806_scbox" class="contents">
1141             <div style="margin-left: 0em">&lt;<span class="scTag">xs:element</span>
1142                <span class="scTag">name</span>="<span class="scContent">phyloxml</span>" <span class="scTag">type</span>="<span class="scContent">
1143                   <span class="type">
1144                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phyloxml&#34; type definition." href="#h155831896">Phyloxml</a>
1145                   </span>
1146                </span>"/&gt;</div>
1147          </div>
1148          <script type="text/javascript">
1149 <!--
1150           setState('h270234806_scbox', false);
1151 // -->
1152 </script>
1153       </div>
1154       <div style="text-align: right; clear: both;">
1155          <a href="#top">top</a>
1156       </div>
1157       <hr/>
1158       <h2>
1159          <a name="SchemaDefinitions">Global Definitions</a>
1160       </h2>
1161       <h3>Complex Type: <a name="h-788356801" class="name">Accession</a>
1162       </h3>
1163       <table class="hierarchy">
1164          <tr>
1165             <th>Super-types:</th>
1166             <td>
1167                <span class="type">
1168                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Accession</strong> (by extension)</td>
1169          </tr>
1170          <tr>
1171             <th>Sub-types:</th>
1172             <td>None</td>
1173          </tr>
1174       </table>
1175       <table class="properties">
1176          <tr>
1177             <th>Name</th>
1178             <td>Accession</td>
1179          </tr>
1180          <tr>
1181             <th>Used by (from the same schema document)</th>
1182             <td>Complex Type <b>
1183                   <a href="#h-1794244794">Sequence</a>
1184                </b>
1185             </td>
1186          </tr>
1187          <tr>
1188             <th>
1189                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1190             </th>
1191             <td>no</td>
1192          </tr>
1193          <tr>
1194             <th>Documentation</th>
1195             <td class="documentation"> Element Accession is used to capture the local part in a sequence identifier (e.g. 'P17304'
1196             in 'UniProtKB:P17304', in which case the 'source' attribute would be 'UniProtKB'). </td>
1197          </tr>
1198       </table>
1199       <div class="sample box">
1200          <div>
1201             <input type="button" id="h-788356801_xibox_button" class="control"
1202                    onclick="switchState('h-788356801_xibox'); return false;"
1203                    style="display: none"/>
1204             <span class="caption">XML Instance Representation</span>
1205          </div>
1206          <div id="h-788356801_xibox" class="contents">
1207             <div style="margin-left: 0em">&lt;...<br/>
1208                <span style="margin-left: 0.5em" class="newFields"> source="<span class="type">
1209                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1210                   <span class="occurs">[1]</span>"</span>&gt; <br/>
1211                <span style="margin-left: 1.5em">
1212                   <span class="type">
1213                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1214                </span>
1215                <br/>&lt;/...&gt;</div>
1216          </div>
1217          <script type="text/javascript">
1218 <!--
1219           setState('h-788356801_xibox', true);
1220 // -->
1221 </script>
1222       </div>
1223       <div class="sample box">
1224          <div>
1225             <input type="button" id="h-788356801_diagram_button" class="control"
1226                    onclick="switchState('h-788356801_diagram'); return false;"
1227                    style="display: none"/>
1228             <span class="caption">Diagram</span>
1229          </div>
1230          <div id="h-788356801_diagram" class="contents">
1231             <img usemap="#h-1142642744" src="schemaDiagrams/h-1142642744.png"/>
1232             <!--
1233             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-1142642744.map--><map name="h-1142642744">
1234 </map>
1235          </div>
1236          <script type="text/javascript">
1237 <!--
1238           setState('h-788356801_diagram', true);
1239 // -->
1240 </script>
1241       </div>
1242       <div class="schemaComponent box">
1243          <div>
1244             <input type="button" id="h-788356801_scbox_button" class="control"
1245                    onclick="switchState('h-788356801_scbox'); return false;"
1246                    style="display: none"/>
1247             <span class="caption">Schema Component Representation</span>
1248          </div>
1249          <div id="h-788356801_scbox" class="contents">
1250             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1251                <span class="scTag">name</span>="<span class="scContent">Accession</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
1252                      <span class="scTag">base</span>="<span class="scContent">
1253                         <span class="type">
1254                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1255                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1256                         <span class="scTag">name</span>="<span class="scContent">source</span>" <span class="scTag">type</span>="<span class="scContent">
1257                            <span class="type">
1258                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1259                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1260          </div>
1261          <script type="text/javascript">
1262 <!--
1263           setState('h-788356801_scbox', false);
1264 // -->
1265 </script>
1266       </div>
1267       <div style="text-align: right; clear: both;">
1268          <a href="#top">top</a>
1269       </div>
1270       <hr/>
1271       <h3>Complex Type: <a name="h917087604" class="name">Annotation</a>
1272       </h3>
1273       <table class="hierarchy">
1274          <tr>
1275             <th>Super-types:</th>
1276             <td>None</td>
1277          </tr>
1278          <tr>
1279             <th>Sub-types:</th>
1280             <td>None</td>
1281          </tr>
1282       </table>
1283       <table class="properties">
1284          <tr>
1285             <th>Name</th>
1286             <td>Annotation</td>
1287          </tr>
1288          <tr>
1289             <th>Used by (from the same schema document)</th>
1290             <td>Complex Type <b>
1291                   <a href="#h-1794244794">Sequence</a>
1292                </b>
1293             </td>
1294          </tr>
1295          <tr>
1296             <th>
1297                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1298             </th>
1299             <td>no</td>
1300          </tr>
1301          <tr>
1302             <th>Documentation</th>
1303             <td class="documentation"> The annotation of a molecular sequence. It is recommended to annotate by using the optional
1304             'ref' attribute (some examples of acceptable values for the ref attribute: 'GO:0008270',
1305             'KEGG:Tetrachloroethene degradation', 'EC:1.1.1.1'). Optional element 'desc' allows for a free text
1306             description. Optional element 'confidence' is used to state the type and value of support for a annotation.
1307             Similarly, optional attribute 'evidence' is used to describe the evidence for a annotation as free text
1308             (e.g. 'experimental'). Optional element 'property' allows for further, typed and referenced annotations from
1309             external resources.</td>
1310          </tr>
1311       </table>
1312       <div class="sample box">
1313          <div>
1314             <input type="button" id="h917087604_xibox_button" class="control"
1315                    onclick="switchState('h917087604_xibox'); return false;"
1316                    style="display: none"/>
1317             <span class="caption">XML Instance Representation</span>
1318          </div>
1319          <div id="h917087604_xibox" class="contents">
1320             <div style="margin-left: 0em">&lt;...<br/>
1321                <span style="margin-left: 0.5em"> ref="<span class="type">
1322                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
1323                   </span>
1324                   <span class="occurs">[0..1]</span>"</span>
1325                <br/>
1326                <span style="margin-left: 0.5em"> source="<span class="type">
1327                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1328                   <span class="occurs">[0..1]</span>"</span>
1329                <br/>
1330                <span style="margin-left: 0.5em"> evidence="<span class="type">
1331                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1332                   <span class="occurs">[0..1]</span>"</span>
1333                <br/>
1334                <span style="margin-left: 0.5em"> type="<span class="type">
1335                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1336                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1337                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
1338                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
1339                </div>
1340                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1341                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1342                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
1343                </div>
1344                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="type">
1345                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
1346                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="occurs">[0..*]</span>
1347                </div>
1348                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
1349                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
1350                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
1351                </div>&lt;/...&gt;</div>
1352          </div>
1353          <script type="text/javascript">
1354 <!--
1355           setState('h917087604_xibox', true);
1356 // -->
1357 </script>
1358       </div>
1359       <div class="sample box">
1360          <div>
1361             <input type="button" id="h917087604_diagram_button" class="control"
1362                    onclick="switchState('h917087604_diagram'); return false;"
1363                    style="display: none"/>
1364             <span class="caption">Diagram</span>
1365          </div>
1366          <div id="h917087604_diagram" class="contents">
1367             <img usemap="#h624412339" src="schemaDiagrams/h624412339.png"/>
1368             <!--
1369             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h624412339.map--><map name="h624412339">
1370                <area shape="rect" alt="h-993584945" coords="236,50,362,90"
1371                      href="phyloxml.xsd.html#h-993584945"/>
1372
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1375
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1378
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1381
1382             </map>
1383          </div>
1384          <script type="text/javascript">
1385 <!--
1386           setState('h917087604_diagram', true);
1387 // -->
1388 </script>
1389       </div>
1390       <div class="schemaComponent box">
1391          <div>
1392             <input type="button" id="h917087604_scbox_button" class="control"
1393                    onclick="switchState('h917087604_scbox'); return false;"
1394                    style="display: none"/>
1395             <span class="caption">Schema Component Representation</span>
1396          </div>
1397          <div id="h917087604_scbox" class="contents">
1398             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1399                <span class="scTag">name</span>="<span class="scContent">Annotation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1400                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
1401                         <span class="type">
1402                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1403                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1404                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1405                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1406                         <span class="type">
1407                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1408                         </span>
1409                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1410                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1411                      <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
1412                         <span class="type">
1413                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
1414                         </span>
1415                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
1416                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1417                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
1418                         <span class="type">
1419                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
1420                         </span>
1421                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1422                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1423                   <span class="scTag">name</span>="<span class="scContent">ref</span>" <span class="scTag">type</span>="<span class="scContent">
1424                      <span class="type">
1425                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
1426                      </span>
1427                   </span>"/&gt;</div>
1428                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1429                   <span class="scTag">name</span>="<span class="scContent">source</span>" <span class="scTag">type</span>="<span class="scContent">
1430                      <span class="type">
1431                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1432                   </span>"/&gt;</div>
1433                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1434                   <span class="scTag">name</span>="<span class="scContent">evidence</span>" <span class="scTag">type</span>="<span class="scContent">
1435                      <span class="type">
1436                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1437                   </span>"/&gt;</div>
1438                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1439                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1440                      <span class="type">
1441                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1442                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1443          </div>
1444          <script type="text/javascript">
1445 <!--
1446           setState('h917087604_scbox', false);
1447 // -->
1448 </script>
1449       </div>
1450       <div style="text-align: right; clear: both;">
1451          <a href="#top">top</a>
1452       </div>
1453       <hr/>
1454       <h3>Complex Type: <a name="h1535743041" class="name">BinaryCharacterList</a>
1455       </h3>
1456       <table class="hierarchy">
1457          <tr>
1458             <th>Super-types:</th>
1459             <td>None</td>
1460          </tr>
1461          <tr>
1462             <th>Sub-types:</th>
1463             <td>None</td>
1464          </tr>
1465       </table>
1466       <table class="properties">
1467          <tr>
1468             <th>Name</th>
1469             <td>BinaryCharacterList</td>
1470          </tr>
1471          <tr>
1472             <th>Used by (from the same schema document)</th>
1473             <td>Complex Type <b>
1474                   <a href="#h-1514309680">BinaryCharacters</a>
1475                </b>, Complex Type <b>
1476                   <a href="#h-1514309680">BinaryCharacters</a>
1477                </b>, Complex Type <b>
1478                   <a href="#h-1514309680">BinaryCharacters</a>
1479                </b>, Complex Type <b>
1480                   <a href="#h-1514309680">BinaryCharacters</a>
1481                </b>
1482             </td>
1483          </tr>
1484          <tr>
1485             <th>
1486                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1487             </th>
1488             <td>no</td>
1489          </tr>
1490       </table>
1491       <div class="sample box">
1492          <div>
1493             <input type="button" id="h1535743041_xibox_button" class="control"
1494                    onclick="switchState('h1535743041_xibox'); return false;"
1495                    style="display: none"/>
1496             <span class="caption">XML Instance Representation</span>
1497          </div>
1498          <div id="h1535743041_xibox" class="contents">
1499             <div style="margin-left: 0em">&lt;...&gt; <br/>
1500                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc&gt; <span class="type">
1501                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc&gt; <span class="occurs">[1..*]</span>
1502                </div>&lt;/...&gt;</div>
1503          </div>
1504          <script type="text/javascript">
1505 <!--
1506           setState('h1535743041_xibox', true);
1507 // -->
1508 </script>
1509       </div>
1510       <div class="sample box">
1511          <div>
1512             <input type="button" id="h1535743041_diagram_button" class="control"
1513                    onclick="switchState('h1535743041_diagram'); return false;"
1514                    style="display: none"/>
1515             <span class="caption">Diagram</span>
1516          </div>
1517          <div id="h1535743041_diagram" class="contents">
1518             <img usemap="#h508496390" src="schemaDiagrams/h508496390.png"/>
1519             <!--
1520             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h508496390.map--><map name="h508496390">
1521 </map>
1522          </div>
1523          <script type="text/javascript">
1524 <!--
1525           setState('h1535743041_diagram', true);
1526 // -->
1527 </script>
1528       </div>
1529       <div class="schemaComponent box">
1530          <div>
1531             <input type="button" id="h1535743041_scbox_button" class="control"
1532                    onclick="switchState('h1535743041_scbox'); return false;"
1533                    style="display: none"/>
1534             <span class="caption">Schema Component Representation</span>
1535          </div>
1536          <div id="h1535743041_scbox" class="contents">
1537             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1538                <span class="scTag">name</span>="<span class="scContent">BinaryCharacterList</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1539                      <span class="scTag">name</span>="<span class="scContent">bc</span>" <span class="scTag">type</span>="<span class="scContent">
1540                         <span class="type">
1541                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1542                      </span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1543          </div>
1544          <script type="text/javascript">
1545 <!--
1546           setState('h1535743041_scbox', false);
1547 // -->
1548 </script>
1549       </div>
1550       <div style="text-align: right; clear: both;">
1551          <a href="#top">top</a>
1552       </div>
1553       <hr/>
1554       <h3>Complex Type: <a name="h-1514309680" class="name">BinaryCharacters</a>
1555       </h3>
1556       <table class="hierarchy">
1557          <tr>
1558             <th>Super-types:</th>
1559             <td>None</td>
1560          </tr>
1561          <tr>
1562             <th>Sub-types:</th>
1563             <td>None</td>
1564          </tr>
1565       </table>
1566       <table class="properties">
1567          <tr>
1568             <th>Name</th>
1569             <td>BinaryCharacters</td>
1570          </tr>
1571          <tr>
1572             <th>Used by (from the same schema document)</th>
1573             <td>Complex Type <b>
1574                   <a href="#h-1124608460">Clade</a>
1575                </b>
1576             </td>
1577          </tr>
1578          <tr>
1579             <th>
1580                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1581             </th>
1582             <td>no</td>
1583          </tr>
1584          <tr>
1585             <th>Documentation</th>
1586             <td class="documentation"> The names and/or counts of binary characters present, gained, and lost at the root of a
1587             clade. </td>
1588          </tr>
1589       </table>
1590       <div class="sample box">
1591          <div>
1592             <input type="button" id="h-1514309680_xibox_button" class="control"
1593                    onclick="switchState('h-1514309680_xibox'); return false;"
1594                    style="display: none"/>
1595             <span class="caption">XML Instance Representation</span>
1596          </div>
1597          <div id="h-1514309680_xibox" class="contents">
1598             <div style="margin-left: 0em">&lt;...<br/>
1599                <span style="margin-left: 0.5em"> type="<span class="type">
1600                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1601                   <span class="occurs">[0..1]</span>"</span>
1602                <br/>
1603                <span style="margin-left: 0.5em"> gained_count="<span class="type">
1604                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1605                   <span class="occurs">[0..1]</span>"</span>
1606                <br/>
1607                <span style="margin-left: 0.5em"> lost_count="<span class="type">
1608                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1609                   <span class="occurs">[0..1]</span>"</span>
1610                <br/>
1611                <span style="margin-left: 0.5em"> present_count="<span class="type">
1612                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1613                   <span class="occurs">[0..1]</span>"</span>
1614                <br/>
1615                <span style="margin-left: 0.5em"> absent_count="<span class="type">
1616                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1617                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1618                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained&gt; <span class="type">
1619                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1620                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained&gt; <span class="occurs">[0..1]</span>
1621                </div>
1622                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost&gt; <span class="type">
1623                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1624                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost&gt; <span class="occurs">[0..1]</span>
1625                </div>
1626                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present&gt; <span class="type">
1627                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1628                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present&gt; <span class="occurs">[0..1]</span>
1629                </div>
1630                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent&gt; <span class="type">
1631                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1632                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent&gt; <span class="occurs">[0..1]</span>
1633                </div>&lt;/...&gt;</div>
1634          </div>
1635          <script type="text/javascript">
1636 <!--
1637           setState('h-1514309680_xibox', true);
1638 // -->
1639 </script>
1640       </div>
1641       <div class="sample box">
1642          <div>
1643             <input type="button" id="h-1514309680_diagram_button" class="control"
1644                    onclick="switchState('h-1514309680_diagram'); return false;"
1645                    style="display: none"/>
1646             <span class="caption">Diagram</span>
1647          </div>
1648          <div id="h-1514309680_diagram" class="contents">
1649             <img usemap="#h-81115689" src="schemaDiagrams/h-81115689.png"/>
1650             <!--
1651             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-81115689.map--><map name="h-81115689">
1652                <area shape="rect" alt="h1535743041" coords="278,0,376,40"
1653                      href="phyloxml.xsd.html#h1535743041"/>
1654
1655                <area shape="rect" alt="h1535743041" coords="278,50,362,90"
1656                      href="phyloxml.xsd.html#h1535743041"/>
1657
1658                <area shape="rect" alt="h1535743041" coords="278,100,383,140"
1659                      href="phyloxml.xsd.html#h1535743041"/>
1660
1661                <area shape="rect" alt="h1535743041" coords="278,150,376,190"
1662                      href="phyloxml.xsd.html#h1535743041"/>
1663
1664             </map>
1665          </div>
1666          <script type="text/javascript">
1667 <!--
1668           setState('h-1514309680_diagram', true);
1669 // -->
1670 </script>
1671       </div>
1672       <div class="schemaComponent box">
1673          <div>
1674             <input type="button" id="h-1514309680_scbox_button" class="control"
1675                    onclick="switchState('h-1514309680_scbox'); return false;"
1676                    style="display: none"/>
1677             <span class="caption">Schema Component Representation</span>
1678          </div>
1679          <div id="h-1514309680_scbox" class="contents">
1680             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1681                <span class="scTag">name</span>="<span class="scContent">BinaryCharacters</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1682                      <span class="scTag">name</span>="<span class="scContent">gained</span>" <span class="scTag">type</span>="<span class="scContent">
1683                         <span class="type">
1684                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1685                         </span>
1686                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1687                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1688                      <span class="scTag">name</span>="<span class="scContent">lost</span>" <span class="scTag">type</span>="<span class="scContent">
1689                         <span class="type">
1690                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1691                         </span>
1692                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1693                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1694                      <span class="scTag">name</span>="<span class="scContent">present</span>" <span class="scTag">type</span>="<span class="scContent">
1695                         <span class="type">
1696                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1697                         </span>
1698                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1699                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1700                      <span class="scTag">name</span>="<span class="scContent">absent</span>" <span class="scTag">type</span>="<span class="scContent">
1701                         <span class="type">
1702                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1703                         </span>
1704                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1705                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1706                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1707                      <span class="type">
1708                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1709                   </span>"/&gt;</div>
1710                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1711                   <span class="scTag">name</span>="<span class="scContent">gained_count</span>" <span class="scTag">type</span>="<span class="scContent">
1712                      <span class="type">
1713                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1714                   </span>"/&gt;</div>
1715                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1716                   <span class="scTag">name</span>="<span class="scContent">lost_count</span>" <span class="scTag">type</span>="<span class="scContent">
1717                      <span class="type">
1718                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1719                   </span>"/&gt;</div>
1720                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1721                   <span class="scTag">name</span>="<span class="scContent">present_count</span>" <span class="scTag">type</span>="<span class="scContent">
1722                      <span class="type">
1723                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1724                   </span>"/&gt;</div>
1725                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1726                   <span class="scTag">name</span>="<span class="scContent">absent_count</span>" <span class="scTag">type</span>="<span class="scContent">
1727                      <span class="type">
1728                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1729                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1730          </div>
1731          <script type="text/javascript">
1732 <!--
1733           setState('h-1514309680_scbox', false);
1734 // -->
1735 </script>
1736       </div>
1737       <div style="text-align: right; clear: both;">
1738          <a href="#top">top</a>
1739       </div>
1740       <hr/>
1741       <h3>Complex Type: <a name="h-1691165380" class="name">BranchColor</a>
1742       </h3>
1743       <table class="hierarchy">
1744          <tr>
1745             <th>Super-types:</th>
1746             <td>None</td>
1747          </tr>
1748          <tr>
1749             <th>Sub-types:</th>
1750             <td>None</td>
1751          </tr>
1752       </table>
1753       <table class="properties">
1754          <tr>
1755             <th>Name</th>
1756             <td>BranchColor</td>
1757          </tr>
1758          <tr>
1759             <th>Used by (from the same schema document)</th>
1760             <td>Complex Type <b>
1761                   <a href="#h-1124608460">Clade</a>
1762                </b>
1763             </td>
1764          </tr>
1765          <tr>
1766             <th>
1767                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1768             </th>
1769             <td>no</td>
1770          </tr>
1771          <tr>
1772             <th>Documentation</th>
1773             <td class="documentation"> This indicates the color of a clade when rendered (the color applies to the whole clade
1774             unless overwritten by the color(s) of sub clades).</td>
1775          </tr>
1776       </table>
1777       <div class="sample box">
1778          <div>
1779             <input type="button" id="h-1691165380_xibox_button" class="control"
1780                    onclick="switchState('h-1691165380_xibox'); return false;"
1781                    style="display: none"/>
1782             <span class="caption">XML Instance Representation</span>
1783          </div>
1784          <div id="h-1691165380_xibox" class="contents">
1785             <div style="margin-left: 0em">&lt;...&gt; <br/>
1786                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red&gt; <span class="type">
1787                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red&gt; <span class="occurs">[1]</span>
1788                </div>
1789                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green&gt; <span class="type">
1790                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green&gt; <span class="occurs">[1]</span>
1791                </div>
1792                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue&gt; <span class="type">
1793                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue&gt; <span class="occurs">[1]</span>
1794                </div>&lt;/...&gt;</div>
1795          </div>
1796          <script type="text/javascript">
1797 <!--
1798           setState('h-1691165380_xibox', true);
1799 // -->
1800 </script>
1801       </div>
1802       <div class="sample box">
1803          <div>
1804             <input type="button" id="h-1691165380_diagram_button" class="control"
1805                    onclick="switchState('h-1691165380_diagram'); return false;"
1806                    style="display: none"/>
1807             <span class="caption">Diagram</span>
1808          </div>
1809          <div id="h-1691165380_diagram" class="contents">
1810             <img usemap="#h-203375637" src="schemaDiagrams/h-203375637.png"/>
1811             <!--
1812             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-203375637.map--><map name="h-203375637">
1813 </map>
1814          </div>
1815          <script type="text/javascript">
1816 <!--
1817           setState('h-1691165380_diagram', true);
1818 // -->
1819 </script>
1820       </div>
1821       <div class="schemaComponent box">
1822          <div>
1823             <input type="button" id="h-1691165380_scbox_button" class="control"
1824                    onclick="switchState('h-1691165380_scbox'); return false;"
1825                    style="display: none"/>
1826             <span class="caption">Schema Component Representation</span>
1827          </div>
1828          <div id="h-1691165380_scbox" class="contents">
1829             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1830                <span class="scTag">name</span>="<span class="scContent">BranchColor</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1831                      <span class="scTag">name</span>="<span class="scContent">red</span>" <span class="scTag">type</span>="<span class="scContent">
1832                         <span class="type">
1833                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1834                      </span>"/&gt;</div>
1835                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1836                      <span class="scTag">name</span>="<span class="scContent">green</span>" <span class="scTag">type</span>="<span class="scContent">
1837                         <span class="type">
1838                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1839                      </span>"/&gt;</div>
1840                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1841                      <span class="scTag">name</span>="<span class="scContent">blue</span>" <span class="scTag">type</span>="<span class="scContent">
1842                         <span class="type">
1843                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1844                      </span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1845          </div>
1846          <script type="text/javascript">
1847 <!--
1848           setState('h-1691165380_scbox', false);
1849 // -->
1850 </script>
1851       </div>
1852       <div style="text-align: right; clear: both;">
1853          <a href="#top">top</a>
1854       </div>
1855       <hr/>
1856       <h3>Complex Type: <a name="h-1124608460" class="name">Clade</a>
1857       </h3>
1858       <table class="hierarchy">
1859          <tr>
1860             <th>Super-types:</th>
1861             <td>None</td>
1862          </tr>
1863          <tr>
1864             <th>Sub-types:</th>
1865             <td>None</td>
1866          </tr>
1867       </table>
1868       <table class="properties">
1869          <tr>
1870             <th>Name</th>
1871             <td>Clade</td>
1872          </tr>
1873          <tr>
1874             <th>Used by (from the same schema document)</th>
1875             <td>Complex Type <b>
1876                   <a href="#h535307528">Phylogeny</a>
1877                </b>, Complex Type <b>
1878                   <a href="#h-1124608460">Clade</a>
1879                </b>
1880             </td>
1881          </tr>
1882          <tr>
1883             <th>
1884                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1885             </th>
1886             <td>no</td>
1887          </tr>
1888          <tr>
1889             <th>Documentation</th>
1890             <td class="documentation"> Element Clade is used in a recursive manner to describe the topology of a phylogenetic tree.
1891             The parent branch length of a clade can be described either with the 'branch_length' element or the
1892             'branch_length' attribute (it is not recommended to use both at the same time, though). Usage of the
1893             'branch_length' attribute allows for a less verbose description. Element 'confidence' is used to indicate
1894             the support for a clade/parent branch. Element 'events' is used to describe such events as gene-duplications
1895             at the root node/parent branch of a clade. Element 'width' is the branch width for this clade (including
1896             parent branch). Both 'color' and 'width' elements apply for the whole clade unless overwritten in-sub
1897             clades. Attribute 'id_source' is used to link other elements to a clade (on the xml-level).
1898          </td>
1899          </tr>
1900       </table>
1901       <div class="sample box">
1902          <div>
1903             <input type="button" id="h-1124608460_xibox_button" class="control"
1904                    onclick="switchState('h-1124608460_xibox'); return false;"
1905                    style="display: none"/>
1906             <span class="caption">XML Instance Representation</span>
1907          </div>
1908          <div id="h-1124608460_xibox" class="contents">
1909             <div style="margin-left: 0em">&lt;...<br/>
1910                <span style="margin-left: 0.5em"> branch_length="<span class="type">
1911                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1912                   <span class="occurs">[0..1]</span>"</span>
1913                <br/>
1914                <span style="margin-left: 0.5em"> id_source="<span class="type">
1915                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
1916                   </span>
1917                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1918                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
1919                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
1920                </div>
1921                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:branch_length&gt; <span class="type">
1922                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:branch_length&gt; <span class="occurs">[0..1]</span>
1923                </div>
1924                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1925                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1926                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..*]</span>
1927                </div>
1928                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width&gt; <span class="type">
1929                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width&gt; <span class="occurs">[0..1]</span>
1930                </div>
1931                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color&gt; <span class="type">
1932                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BranchColor&#34; type definition." href="#h-1691165380">BranchColor</a>
1933                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color&gt; <span class="occurs">[0..1]</span>
1934                </div>
1935                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id&gt; <span class="type">
1936                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
1937                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id&gt; <span class="occurs">[0..1]</span>
1938                </div>
1939                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy&gt; <span class="type">
1940                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Taxonomy&#34; type definition." href="#h888650454">Taxonomy</a>
1941                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy&gt; <span class="occurs">[0..*]</span>
1942                </div>
1943                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence&gt; <span class="type">
1944                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Sequence&#34; type definition." href="#h-1794244794">Sequence</a>
1945                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence&gt; <span class="occurs">[0..*]</span>
1946                </div>
1947                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:events&gt; <span class="type">
1948                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Events&#34; type definition." href="#h-436501026">Events</a>
1949                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:events&gt; <span class="occurs">[0..1]</span>
1950                </div>
1951                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters&gt; <span class="type">
1952                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacters&#34; type definition." href="#h-1514309680">BinaryCharacters</a>
1953                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters&gt; <span class="occurs">[0..1]</span>
1954                </div>
1955                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution&gt; <span class="type">
1956                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Distribution&#34; type definition." href="#h-979596407">Distribution</a>
1957                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution&gt; <span class="occurs">[0..*]</span>
1958                </div>
1959                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="type">
1960                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Date&#34; type definition." href="#h517931443">Date</a>
1961                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="occurs">[0..1]</span>
1962                </div>
1963                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:reference&gt; <span class="type">
1964                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Reference&#34; type definition." href="#h401516646">Reference</a>
1965                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:reference&gt; <span class="occurs">[0..*]</span>
1966                </div>
1967                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="type">
1968                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
1969                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="occurs">[0..*]</span>
1970                </div>
1971                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="type">
1972                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
1973                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="occurs">[0..*]</span>
1974                </div>
1975                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1976                </div>&lt;/...&gt;</div>
1977          </div>
1978          <script type="text/javascript">
1979 <!--
1980           setState('h-1124608460_xibox', true);
1981 // -->
1982 </script>
1983       </div>
1984       <div class="sample box">
1985          <div>
1986             <input type="button" id="h-1124608460_diagram_button" class="control"
1987                    onclick="switchState('h-1124608460_diagram'); return false;"
1988                    style="display: none"/>
1989             <span class="caption">Diagram</span>
1990          </div>
1991          <div id="h-1124608460_diagram" class="contents">
1992             <img usemap="#h854822387" src="schemaDiagrams/h854822387.png"/>
1993             <!--
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2032          </div>
2033          <script type="text/javascript">
2034 <!--
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2037 </script>
2038       </div>
2039       <div class="schemaComponent box">
2040          <div>
2041             <input type="button" id="h-1124608460_scbox_button" class="control"
2042                    onclick="switchState('h-1124608460_scbox'); return false;"
2043                    style="display: none"/>
2044             <span class="caption">Schema Component Representation</span>
2045          </div>
2046          <div id="h-1124608460_scbox" class="contents">
2047             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2048                <span class="scTag">name</span>="<span class="scContent">Clade</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2049                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2050                         <span class="type">
2051                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2052                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2053                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2054                      <span class="scTag">name</span>="<span class="scContent">branch_length</span>" <span class="scTag">type</span>="<span class="scContent">
2055                         <span class="type">
2056                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2057                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2058                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2059                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2060                         <span class="type">
2061                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2062                         </span>
2063                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2064                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2065                      <span class="scTag">name</span>="<span class="scContent">width</span>" <span class="scTag">type</span>="<span class="scContent">
2066                         <span class="type">
2067                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2068                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2069                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2070                      <span class="scTag">name</span>="<span class="scContent">color</span>" <span class="scTag">type</span>="<span class="scContent">
2071                         <span class="type">
2072                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BranchColor&#34; type definition." href="#h-1691165380">BranchColor</a>
2073                         </span>
2074                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2075                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2076                      <span class="scTag">name</span>="<span class="scContent">node_id</span>" <span class="scTag">type</span>="<span class="scContent">
2077                         <span class="type">
2078                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
2079                         </span>
2080                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2081                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2082                      <span class="scTag">name</span>="<span class="scContent">taxonomy</span>" <span class="scTag">type</span>="<span class="scContent">
2083                         <span class="type">
2084                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Taxonomy&#34; type definition." href="#h888650454">Taxonomy</a>
2085                         </span>
2086                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2087                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2088                      <span class="scTag">name</span>="<span class="scContent">sequence</span>" <span class="scTag">type</span>="<span class="scContent">
2089                         <span class="type">
2090                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Sequence&#34; type definition." href="#h-1794244794">Sequence</a>
2091                         </span>
2092                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2093                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2094                      <span class="scTag">name</span>="<span class="scContent">events</span>" <span class="scTag">type</span>="<span class="scContent">
2095                         <span class="type">
2096                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Events&#34; type definition." href="#h-436501026">Events</a>
2097                         </span>
2098                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2099                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2100                      <span class="scTag">name</span>="<span class="scContent">binary_characters</span>" <span class="scTag">type</span>="<span class="scContent">
2101                         <span class="type">
2102                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacters&#34; type definition." href="#h-1514309680">BinaryCharacters</a>
2103                         </span>
2104                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2105                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2106                      <span class="scTag">name</span>="<span class="scContent">distribution</span>" <span class="scTag">type</span>="<span class="scContent">
2107                         <span class="type">
2108                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Distribution&#34; type definition." href="#h-979596407">Distribution</a>
2109                         </span>
2110                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2111                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2112                      <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
2113                         <span class="type">
2114                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Date&#34; type definition." href="#h517931443">Date</a>
2115                         </span>
2116                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2117                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2118                      <span class="scTag">name</span>="<span class="scContent">reference</span>" <span class="scTag">type</span>="<span class="scContent">
2119                         <span class="type">
2120                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Reference&#34; type definition." href="#h401516646">Reference</a>
2121                         </span>
2122                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2123                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2124                      <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
2125                         <span class="type">
2126                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
2127                         </span>
2128                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2129                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2130                      <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
2131                         <span class="type">
2132                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
2133                         </span>
2134                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2135                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
2136                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2137                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2138                   <span class="scTag">name</span>="<span class="scContent">branch_length</span>" <span class="scTag">type</span>="<span class="scContent">
2139                      <span class="type">
2140                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2141                   </span>"/&gt;</div>
2142                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2143                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
2144                      <span class="type">
2145                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
2146                      </span>
2147                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2148          </div>
2149          <script type="text/javascript">
2150 <!--
2151           setState('h-1124608460_scbox', false);
2152 // -->
2153 </script>
2154       </div>
2155       <div style="text-align: right; clear: both;">
2156          <a href="#top">top</a>
2157       </div>
2158       <hr/>
2159       <h3>Complex Type: <a name="h192331856" class="name">CladeRelation</a>
2160       </h3>
2161       <table class="hierarchy">
2162          <tr>
2163             <th>Super-types:</th>
2164             <td>None</td>
2165          </tr>
2166          <tr>
2167             <th>Sub-types:</th>
2168             <td>None</td>
2169          </tr>
2170       </table>
2171       <table class="properties">
2172          <tr>
2173             <th>Name</th>
2174             <td>CladeRelation</td>
2175          </tr>
2176          <tr>
2177             <th>Used by (from the same schema document)</th>
2178             <td>Complex Type <b>
2179                   <a href="#h535307528">Phylogeny</a>
2180                </b>
2181             </td>
2182          </tr>
2183          <tr>
2184             <th>
2185                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2186             </th>
2187             <td>no</td>
2188          </tr>
2189          <tr>
2190             <th>Documentation</th>
2191             <td class="documentation"> This is used to express a typed relationship between two clades. For example it could be
2192             used to describe multiple parents of a clade.</td>
2193          </tr>
2194       </table>
2195       <div class="sample box">
2196          <div>
2197             <input type="button" id="h192331856_xibox_button" class="control"
2198                    onclick="switchState('h192331856_xibox'); return false;"
2199                    style="display: none"/>
2200             <span class="caption">XML Instance Representation</span>
2201          </div>
2202          <div id="h192331856_xibox" class="contents">
2203             <div style="margin-left: 0em">&lt;...<br/>
2204                <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
2205                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2206                   </span>
2207                   <span class="occurs">[1]</span>"</span>
2208                <br/>
2209                <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
2210                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2211                   </span>
2212                   <span class="occurs">[1]</span>"</span>
2213                <br/>
2214                <span style="margin-left: 0.5em"> distance="<span class="type">
2215                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2216                   <span class="occurs">[0..1]</span>"</span>
2217                <br/>
2218                <span style="margin-left: 0.5em"> type="<span class="type">
2219                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2220                   <span class="occurs">[1]</span>"</span>&gt; <br/>
2221                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
2222                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2223                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
2224                </div>&lt;/...&gt;</div>
2225          </div>
2226          <script type="text/javascript">
2227 <!--
2228           setState('h192331856_xibox', true);
2229 // -->
2230 </script>
2231       </div>
2232       <div class="sample box">
2233          <div>
2234             <input type="button" id="h192331856_diagram_button" class="control"
2235                    onclick="switchState('h192331856_diagram'); return false;"
2236                    style="display: none"/>
2237             <span class="caption">Diagram</span>
2238          </div>
2239          <div id="h192331856_diagram" class="contents">
2240             <img usemap="#h1919634775" src="schemaDiagrams/h1919634775.png"/>
2241             <!--
2242             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h1919634775.map--><map name="h1919634775">
2243                <area shape="rect" alt="h-993584945" coords="257,0,383,40"
2244                      href="phyloxml.xsd.html#h-993584945"/>
2245
2246                <area shape="rect" alt="h577349652" coords="171,50,301,76"
2247                      href="phyloxml.xsd.html#h577349652"/>
2248
2249                <area shape="rect" alt="h577349652" coords="171,86,301,112"
2250                      href="phyloxml.xsd.html#h577349652"/>
2251
2252             </map>
2253          </div>
2254          <script type="text/javascript">
2255 <!--
2256           setState('h192331856_diagram', true);
2257 // -->
2258 </script>
2259       </div>
2260       <div class="schemaComponent box">
2261          <div>
2262             <input type="button" id="h192331856_scbox_button" class="control"
2263                    onclick="switchState('h192331856_scbox'); return false;"
2264                    style="display: none"/>
2265             <span class="caption">Schema Component Representation</span>
2266          </div>
2267          <div id="h192331856_scbox" class="contents">
2268             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2269                <span class="scTag">name</span>="<span class="scContent">CladeRelation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2270                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2271                         <span class="type">
2272                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2273                         </span>
2274                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2275                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2276                   <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
2277                      <span class="type">
2278                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2279                      </span>
2280                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2281                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2282                   <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
2283                      <span class="type">
2284                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2285                      </span>
2286                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2287                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2288                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
2289                      <span class="type">
2290                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2291                   </span>"/&gt;</div>
2292                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2293                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2294                      <span class="type">
2295                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2296                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2297          </div>
2298          <script type="text/javascript">
2299 <!--
2300           setState('h192331856_scbox', false);
2301 // -->
2302 </script>
2303       </div>
2304       <div style="text-align: right; clear: both;">
2305          <a href="#top">top</a>
2306       </div>
2307       <hr/>
2308       <h3>Complex Type: <a name="h-993584945" class="name">Confidence</a>
2309       </h3>
2310       <table class="hierarchy">
2311          <tr>
2312             <th>Super-types:</th>
2313             <td>
2314                <span class="type">
2315                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt; <strong>Confidence</strong> (by extension)</td>
2316          </tr>
2317          <tr>
2318             <th>Sub-types:</th>
2319             <td>None</td>
2320          </tr>
2321       </table>
2322       <table class="properties">
2323          <tr>
2324             <th>Name</th>
2325             <td>Confidence</td>
2326          </tr>
2327          <tr>
2328             <th>Used by (from the same schema document)</th>
2329             <td>Complex Type <b>
2330                   <a href="#h535307528">Phylogeny</a>
2331                </b>, Complex Type <b>
2332                   <a href="#h-1124608460">Clade</a>
2333                </b>, Complex Type <b>
2334                   <a href="#h-436501026">Events</a>
2335                </b>, Complex Type <b>
2336                   <a href="#h917087604">Annotation</a>
2337                </b>, Complex Type <b>
2338                   <a href="#h-802965662">SequenceRelation</a>
2339                </b>, Complex Type <b>
2340                   <a href="#h192331856">CladeRelation</a>
2341                </b>
2342             </td>
2343          </tr>
2344          <tr>
2345             <th>
2346                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2347             </th>
2348             <td>no</td>
2349          </tr>
2350          <tr>
2351             <th>Documentation</th>
2352             <td class="documentation"> A general purpose confidence element. For example this can be used to express the bootstrap
2353             support value of a clade (in which case the 'type' attribute is 'bootstrap').</td>
2354          </tr>
2355       </table>
2356       <div class="sample box">
2357          <div>
2358             <input type="button" id="h-993584945_xibox_button" class="control"
2359                    onclick="switchState('h-993584945_xibox'); return false;"
2360                    style="display: none"/>
2361             <span class="caption">XML Instance Representation</span>
2362          </div>
2363          <div id="h-993584945_xibox" class="contents">
2364             <div style="margin-left: 0em">&lt;...<br/>
2365                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2366                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2367                   <span class="occurs">[1]</span>"</span>&gt; <br/>
2368                <span style="margin-left: 1.5em">
2369                   <span class="type">
2370                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2371                </span>
2372                <br/>&lt;/...&gt;</div>
2373          </div>
2374          <script type="text/javascript">
2375 <!--
2376           setState('h-993584945_xibox', true);
2377 // -->
2378 </script>
2379       </div>
2380       <div class="sample box">
2381          <div>
2382             <input type="button" id="h-993584945_diagram_button" class="control"
2383                    onclick="switchState('h-993584945_diagram'); return false;"
2384                    style="display: none"/>
2385             <span class="caption">Diagram</span>
2386          </div>
2387          <div id="h-993584945_diagram" class="contents">
2388             <img usemap="#h1603897912" src="schemaDiagrams/h1603897912.png"/>
2389             <!--
2390             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h1603897912.map--><map name="h1603897912">
2391 </map>
2392          </div>
2393          <script type="text/javascript">
2394 <!--
2395           setState('h-993584945_diagram', true);
2396 // -->
2397 </script>
2398       </div>
2399       <div class="schemaComponent box">
2400          <div>
2401             <input type="button" id="h-993584945_scbox_button" class="control"
2402                    onclick="switchState('h-993584945_scbox'); return false;"
2403                    style="display: none"/>
2404             <span class="caption">Schema Component Representation</span>
2405          </div>
2406          <div id="h-993584945_scbox" class="contents">
2407             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2408                <span class="scTag">name</span>="<span class="scContent">Confidence</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
2409                      <span class="scTag">base</span>="<span class="scContent">
2410                         <span class="type">
2411                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2412                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2413                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2414                            <span class="type">
2415                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2416                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2417          </div>
2418          <script type="text/javascript">
2419 <!--
2420           setState('h-993584945_scbox', false);
2421 // -->
2422 </script>
2423       </div>
2424       <div style="text-align: right; clear: both;">
2425          <a href="#top">top</a>
2426       </div>
2427       <hr/>
2428       <h3>Complex Type: <a name="h517931443" class="name">Date</a>
2429       </h3>
2430       <table class="hierarchy">
2431          <tr>
2432             <th>Super-types:</th>
2433             <td>None</td>
2434          </tr>
2435          <tr>
2436             <th>Sub-types:</th>
2437             <td>None</td>
2438          </tr>
2439       </table>
2440       <table class="properties">
2441          <tr>
2442             <th>Name</th>
2443             <td>Date</td>
2444          </tr>
2445          <tr>
2446             <th>Used by (from the same schema document)</th>
2447             <td>Complex Type <b>
2448                   <a href="#h-1124608460">Clade</a>
2449                </b>
2450             </td>
2451          </tr>
2452          <tr>
2453             <th>
2454                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2455             </th>
2456             <td>no</td>
2457          </tr>
2458          <tr>
2459             <th>Documentation</th>
2460             <td class="documentation"> A date associated with a clade/node. Its value can be numerical by using the 'value' element
2461             and/or free text with the 'desc' element' (e.g. 'Silurian'). If a numerical value is used, it is recommended
2462             to employ the 'unit' attribute to indicate the type of the numerical value (e.g. 'mya' for 'million years
2463             ago'). </td>
2464          </tr>
2465       </table>
2466       <div class="sample box">
2467          <div>
2468             <input type="button" id="h517931443_xibox_button" class="control"
2469                    onclick="switchState('h517931443_xibox'); return false;"
2470                    style="display: none"/>
2471             <span class="caption">XML Instance Representation</span>
2472          </div>
2473          <div id="h517931443_xibox" class="contents">
2474             <div style="margin-left: 0em">&lt;...<br/>
2475                <span style="margin-left: 0.5em"> unit="<span class="type">
2476                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2477                   <span class="occurs">[0..1]</span>"</span>
2478                <br/>
2479                <span style="margin-left: 0.5em"> range="<span class="type">
2480                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2481                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2482                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
2483                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
2484                </div>
2485                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value&gt; <span class="type">
2486                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value&gt; <span class="occurs">[0..1]</span>
2487                </div>&lt;/...&gt;</div>
2488          </div>
2489          <script type="text/javascript">
2490 <!--
2491           setState('h517931443_xibox', true);
2492 // -->
2493 </script>
2494       </div>
2495       <div class="sample box">
2496          <div>
2497             <input type="button" id="h517931443_diagram_button" class="control"
2498                    onclick="switchState('h517931443_diagram'); return false;"
2499                    style="display: none"/>
2500             <span class="caption">Diagram</span>
2501          </div>
2502          <div id="h517931443_diagram" class="contents">
2503             <img usemap="#h169662420" src="schemaDiagrams/h169662420.png"/>
2504             <!--
2505             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h169662420.map--><map name="h169662420">
2506 </map>
2507          </div>
2508          <script type="text/javascript">
2509 <!--
2510           setState('h517931443_diagram', true);
2511 // -->
2512 </script>
2513       </div>
2514       <div class="schemaComponent box">
2515          <div>
2516             <input type="button" id="h517931443_scbox_button" class="control"
2517                    onclick="switchState('h517931443_scbox'); return false;"
2518                    style="display: none"/>
2519             <span class="caption">Schema Component Representation</span>
2520          </div>
2521          <div id="h517931443_scbox" class="contents">
2522             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2523                <span class="scTag">name</span>="<span class="scContent">Date</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2524                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
2525                         <span class="type">
2526                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2527                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2528                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2529                      <span class="scTag">name</span>="<span class="scContent">value</span>" <span class="scTag">type</span>="<span class="scContent">
2530                         <span class="type">
2531                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2532                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2533                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2534                   <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
2535                      <span class="type">
2536                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2537                   </span>"/&gt;</div>
2538                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2539                   <span class="scTag">name</span>="<span class="scContent">range</span>" <span class="scTag">type</span>="<span class="scContent">
2540                      <span class="type">
2541                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2542                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2543          </div>
2544          <script type="text/javascript">
2545 <!--
2546           setState('h517931443_scbox', false);
2547 // -->
2548 </script>
2549       </div>
2550       <div style="text-align: right; clear: both;">
2551          <a href="#top">top</a>
2552       </div>
2553       <hr/>
2554       <h3>Complex Type: <a name="h-979596407" class="name">Distribution</a>
2555       </h3>
2556       <table class="hierarchy">
2557          <tr>
2558             <th>Super-types:</th>
2559             <td>None</td>
2560          </tr>
2561          <tr>
2562             <th>Sub-types:</th>
2563             <td>None</td>
2564          </tr>
2565       </table>
2566       <table class="properties">
2567          <tr>
2568             <th>Name</th>
2569             <td>Distribution</td>
2570          </tr>
2571          <tr>
2572             <th>Used by (from the same schema document)</th>
2573             <td>Complex Type <b>
2574                   <a href="#h-1124608460">Clade</a>
2575                </b>
2576             </td>
2577          </tr>
2578          <tr>
2579             <th>
2580                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2581             </th>
2582             <td>no</td>
2583          </tr>
2584          <tr>
2585             <th>Documentation</th>
2586             <td class="documentation"> The geographic distribution of the items of a clade (species, sequences), intended for
2587             phylogeographic applications. The location can be described either by free text in the 'desc' element and/or
2588             by the coordinates of one or more 'Points' (similar to the 'Point' element in Google's KML format) or by
2589             'Polygons'. </td>
2590          </tr>
2591       </table>
2592       <div class="sample box">
2593          <div>
2594             <input type="button" id="h-979596407_xibox_button" class="control"
2595                    onclick="switchState('h-979596407_xibox'); return false;"
2596                    style="display: none"/>
2597             <span class="caption">XML Instance Representation</span>
2598          </div>
2599          <div id="h-979596407_xibox" class="contents">
2600             <div style="margin-left: 0em">&lt;...&gt; <br/>
2601                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
2602                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
2603                </div>
2604                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="type">
2605                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
2606                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="occurs">[0..*]</span>
2607                </div>
2608                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:polygon&gt; <span class="type">
2609                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Polygon&#34; type definition." href="#h332351765">Polygon</a>
2610                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:polygon&gt; <span class="occurs">[0..*]</span>
2611                </div>&lt;/...&gt;</div>
2612          </div>
2613          <script type="text/javascript">
2614 <!--
2615           setState('h-979596407_xibox', true);
2616 // -->
2617 </script>
2618       </div>
2619       <div class="sample box">
2620          <div>
2621             <input type="button" id="h-979596407_diagram_button" class="control"
2622                    onclick="switchState('h-979596407_diagram'); return false;"
2623                    style="display: none"/>
2624             <span class="caption">Diagram</span>
2625          </div>
2626          <div id="h-979596407_diagram" class="contents">
2627             <img usemap="#h-265752642" src="schemaDiagrams/h-265752642.png"/>
2628             <!--
2629             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-265752642.map--><map name="h-265752642">
2630                <area shape="rect" alt="h-1112505301" coords="250,50,341,90"
2631                      href="phyloxml.xsd.html#h-1112505301"/>
2632
2633                <area shape="rect" alt="h332351765" coords="250,100,355,140"
2634                      href="phyloxml.xsd.html#h332351765"/>
2635
2636             </map>
2637          </div>
2638          <script type="text/javascript">
2639 <!--
2640           setState('h-979596407_diagram', true);
2641 // -->
2642 </script>
2643       </div>
2644       <div class="schemaComponent box">
2645          <div>
2646             <input type="button" id="h-979596407_scbox_button" class="control"
2647                    onclick="switchState('h-979596407_scbox'); return false;"
2648                    style="display: none"/>
2649             <span class="caption">Schema Component Representation</span>
2650          </div>
2651          <div id="h-979596407_scbox" class="contents">
2652             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2653                <span class="scTag">name</span>="<span class="scContent">Distribution</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2654                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
2655                         <span class="type">
2656                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2657                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2658                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2659                      <span class="scTag">name</span>="<span class="scContent">point</span>" <span class="scTag">type</span>="<span class="scContent">
2660                         <span class="type">
2661                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
2662                         </span>
2663                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2664                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2665                      <span class="scTag">name</span>="<span class="scContent">polygon</span>" <span class="scTag">type</span>="<span class="scContent">
2666                         <span class="type">
2667                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Polygon&#34; type definition." href="#h332351765">Polygon</a>
2668                         </span>
2669                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2670          </div>
2671          <script type="text/javascript">
2672 <!--
2673           setState('h-979596407_scbox', false);
2674 // -->
2675 </script>
2676       </div>
2677       <div style="text-align: right; clear: both;">
2678          <a href="#top">top</a>
2679       </div>
2680       <hr/>
2681       <h3>Complex Type: <a name="h259010940" class="name">DomainArchitecture</a>
2682       </h3>
2683       <table class="hierarchy">
2684          <tr>
2685             <th>Super-types:</th>
2686             <td>None</td>
2687          </tr>
2688          <tr>
2689             <th>Sub-types:</th>
2690             <td>None</td>
2691          </tr>
2692       </table>
2693       <table class="properties">
2694          <tr>
2695             <th>Name</th>
2696             <td>DomainArchitecture</td>
2697          </tr>
2698          <tr>
2699             <th>Used by (from the same schema document)</th>
2700             <td>Complex Type <b>
2701                   <a href="#h-1794244794">Sequence</a>
2702                </b>
2703             </td>
2704          </tr>
2705          <tr>
2706             <th>
2707                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2708             </th>
2709             <td>no</td>
2710          </tr>
2711          <tr>
2712             <th>Documentation</th>
2713             <td class="documentation"> This is used describe the domain architecture of a protein. Attribute 'length' is the total
2714             length of the protein</td>
2715          </tr>
2716       </table>
2717       <div class="sample box">
2718          <div>
2719             <input type="button" id="h259010940_xibox_button" class="control"
2720                    onclick="switchState('h259010940_xibox'); return false;"
2721                    style="display: none"/>
2722             <span class="caption">XML Instance Representation</span>
2723          </div>
2724          <div id="h259010940_xibox" class="contents">
2725             <div style="margin-left: 0em">&lt;...<br/>
2726                <span style="margin-left: 0.5em"> length="<span class="type">
2727                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2728                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2729                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain&gt; <span class="type">
2730                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ProteinDomain&#34; type definition." href="#h-1389097534">ProteinDomain</a>
2731                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain&gt; <span class="occurs">[1..*]</span>
2732                </div>&lt;/...&gt;</div>
2733          </div>
2734          <script type="text/javascript">
2735 <!--
2736           setState('h259010940_xibox', true);
2737 // -->
2738 </script>
2739       </div>
2740       <div class="sample box">
2741          <div>
2742             <input type="button" id="h259010940_diagram_button" class="control"
2743                    onclick="switchState('h259010940_diagram'); return false;"
2744                    style="display: none"/>
2745             <span class="caption">Diagram</span>
2746          </div>
2747          <div id="h259010940_diagram" class="contents">
2748             <img usemap="#h-93417557" src="schemaDiagrams/h-93417557.png"/>
2749             <!--
2750             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-93417557.map--><map name="h-93417557">
2751                <area shape="rect" alt="h-1389097534" coords="292,0,390,40"
2752                      href="phyloxml.xsd.html#h-1389097534"/>
2753
2754             </map>
2755          </div>
2756          <script type="text/javascript">
2757 <!--
2758           setState('h259010940_diagram', true);
2759 // -->
2760 </script>
2761       </div>
2762       <div class="schemaComponent box">
2763          <div>
2764             <input type="button" id="h259010940_scbox_button" class="control"
2765                    onclick="switchState('h259010940_scbox'); return false;"
2766                    style="display: none"/>
2767             <span class="caption">Schema Component Representation</span>
2768          </div>
2769          <div id="h259010940_scbox" class="contents">
2770             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2771                <span class="scTag">name</span>="<span class="scContent">DomainArchitecture</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2772                      <span class="scTag">name</span>="<span class="scContent">domain</span>" <span class="scTag">type</span>="<span class="scContent">
2773                         <span class="type">
2774                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ProteinDomain&#34; type definition." href="#h-1389097534">ProteinDomain</a>
2775                         </span>
2776                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">1</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2777                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2778                   <span class="scTag">name</span>="<span class="scContent">length</span>" <span class="scTag">type</span>="<span class="scContent">
2779                      <span class="type">
2780                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2781                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2782          </div>
2783          <script type="text/javascript">
2784 <!--
2785           setState('h259010940_scbox', false);
2786 // -->
2787 </script>
2788       </div>
2789       <div style="text-align: right; clear: both;">
2790          <a href="#top">top</a>
2791       </div>
2792       <hr/>
2793       <h3>Complex Type: <a name="h-436501026" class="name">Events</a>
2794       </h3>
2795       <table class="hierarchy">
2796          <tr>
2797             <th>Super-types:</th>
2798             <td>None</td>
2799          </tr>
2800          <tr>
2801             <th>Sub-types:</th>
2802             <td>None</td>
2803          </tr>
2804       </table>
2805       <table class="properties">
2806          <tr>
2807             <th>Name</th>
2808             <td>Events</td>
2809          </tr>
2810          <tr>
2811             <th>Used by (from the same schema document)</th>
2812             <td>Complex Type <b>
2813                   <a href="#h-1124608460">Clade</a>
2814                </b>
2815             </td>
2816          </tr>
2817          <tr>
2818             <th>
2819                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2820             </th>
2821             <td>no</td>
2822          </tr>
2823          <tr>
2824             <th>Documentation</th>
2825             <td class="documentation"> Events at the root node of a clade (e.g. one gene duplication). </td>
2826          </tr>
2827       </table>
2828       <div class="sample box">
2829          <div>
2830             <input type="button" id="h-436501026_xibox_button" class="control"
2831                    onclick="switchState('h-436501026_xibox'); return false;"
2832                    style="display: none"/>
2833             <span class="caption">XML Instance Representation</span>
2834          </div>
2835          <div id="h-436501026_xibox" class="contents">
2836             <div style="margin-left: 0em">&lt;...&gt; <br/>
2837                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type&gt; <span class="type">
2838                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;EventType&#34; type definition." href="#h1358103055">EventType</a>
2839                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type&gt; <span class="occurs">[0..1]</span>
2840                </div>
2841                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications&gt; <span class="type">
2842                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications&gt; <span class="occurs">[0..1]</span>
2843                </div>
2844                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations&gt; <span class="type">
2845                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations&gt; <span class="occurs">[0..1]</span>
2846                </div>
2847                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses&gt; <span class="type">
2848                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses&gt; <span class="occurs">[0..1]</span>
2849                </div>
2850                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
2851                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2852                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
2853                </div>&lt;/...&gt;</div>
2854          </div>
2855          <script type="text/javascript">
2856 <!--
2857           setState('h-436501026_xibox', true);
2858 // -->
2859 </script>
2860       </div>
2861       <div class="sample box">
2862          <div>
2863             <input type="button" id="h-436501026_diagram_button" class="control"
2864                    onclick="switchState('h-436501026_diagram'); return false;"
2865                    style="display: none"/>
2866             <span class="caption">Diagram</span>
2867          </div>
2868          <div id="h-436501026_diagram" class="contents">
2869             <img usemap="#h-1724830583" src="schemaDiagrams/h-1724830583.png"/>
2870             <!--
2871             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-1724830583.map--><map name="h-1724830583">
2872                <area shape="rect" alt="h1358103055" coords="208,0,292,40"
2873                      href="phyloxml.xsd.html#h1358103055"/>
2874
2875                <area shape="rect" alt="h-993584945" coords="208,200,334,240"
2876                      href="phyloxml.xsd.html#h-993584945"/>
2877
2878             </map>
2879          </div>
2880          <script type="text/javascript">
2881 <!--
2882           setState('h-436501026_diagram', true);
2883 // -->
2884 </script>
2885       </div>
2886       <div class="schemaComponent box">
2887          <div>
2888             <input type="button" id="h-436501026_scbox_button" class="control"
2889                    onclick="switchState('h-436501026_scbox'); return false;"
2890                    style="display: none"/>
2891             <span class="caption">Schema Component Representation</span>
2892          </div>
2893          <div id="h-436501026_scbox" class="contents">
2894             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2895                <span class="scTag">name</span>="<span class="scContent">Events</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2896                      <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2897                         <span class="type">
2898                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;EventType&#34; type definition." href="#h1358103055">EventType</a>
2899                         </span>
2900                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2901                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2902                      <span class="scTag">name</span>="<span class="scContent">duplications</span>" <span class="scTag">type</span>="<span class="scContent">
2903                         <span class="type">
2904                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2905                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2906                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2907                      <span class="scTag">name</span>="<span class="scContent">speciations</span>" <span class="scTag">type</span>="<span class="scContent">
2908                         <span class="type">
2909                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2910                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2911                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2912                      <span class="scTag">name</span>="<span class="scContent">losses</span>" <span class="scTag">type</span>="<span class="scContent">
2913                         <span class="type">
2914                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2915                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2916                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2917                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2918                         <span class="type">
2919                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2920                         </span>
2921                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2922          </div>
2923          <script type="text/javascript">
2924 <!--
2925           setState('h-436501026_scbox', false);
2926 // -->
2927 </script>
2928       </div>
2929       <div style="text-align: right; clear: both;">
2930          <a href="#top">top</a>
2931       </div>
2932       <hr/>
2933       <h3>Complex Type: <a name="h-853091232" class="name">Id</a>
2934       </h3>
2935       <table class="hierarchy">
2936          <tr>
2937             <th>Super-types:</th>
2938             <td>
2939                <span class="type">
2940                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Id</strong> (by extension)</td>
2941          </tr>
2942          <tr>
2943             <th>Sub-types:</th>
2944             <td>None</td>
2945          </tr>
2946       </table>
2947       <table class="properties">
2948          <tr>
2949             <th>Name</th>
2950             <td>Id</td>
2951          </tr>
2952          <tr>
2953             <th>Used by (from the same schema document)</th>
2954             <td>Complex Type <b>
2955                   <a href="#h535307528">Phylogeny</a>
2956                </b>, Complex Type <b>
2957                   <a href="#h-1124608460">Clade</a>
2958                </b>, Complex Type <b>
2959                   <a href="#h888650454">Taxonomy</a>
2960                </b>
2961             </td>
2962          </tr>
2963          <tr>
2964             <th>
2965                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2966             </th>
2967             <td>no</td>
2968          </tr>
2969          <tr>
2970             <th>Documentation</th>
2971             <td class="documentation"> A general purpose identifier element. Allows to indicate the type (or source) of an
2972             identifier. </td>
2973          </tr>
2974       </table>
2975       <div class="sample box">
2976          <div>
2977             <input type="button" id="h-853091232_xibox_button" class="control"
2978                    onclick="switchState('h-853091232_xibox'); return false;"
2979                    style="display: none"/>
2980             <span class="caption">XML Instance Representation</span>
2981          </div>
2982          <div id="h-853091232_xibox" class="contents">
2983             <div style="margin-left: 0em">&lt;...<br/>
2984                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2985                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2986                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2987                <span style="margin-left: 1.5em">
2988                   <span class="type">
2989                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2990                </span>
2991                <br/>&lt;/...&gt;</div>
2992          </div>
2993          <script type="text/javascript">
2994 <!--
2995           setState('h-853091232_xibox', true);
2996 // -->
2997 </script>
2998       </div>
2999       <div class="sample box">
3000          <div>
3001             <input type="button" id="h-853091232_diagram_button" class="control"
3002                    onclick="switchState('h-853091232_diagram'); return false;"
3003                    style="display: none"/>
3004             <span class="caption">Diagram</span>
3005          </div>
3006          <div id="h-853091232_diagram" class="contents">
3007             <img usemap="#h-1484760249" src="schemaDiagrams/h-1484760249.png"/>
3008             <!--
3009             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-1484760249.map--><map name="h-1484760249">
3010 </map>
3011          </div>
3012          <script type="text/javascript">
3013 <!--
3014           setState('h-853091232_diagram', true);
3015 // -->
3016 </script>
3017       </div>
3018       <div class="schemaComponent box">
3019          <div>
3020             <input type="button" id="h-853091232_scbox_button" class="control"
3021                    onclick="switchState('h-853091232_scbox'); return false;"
3022                    style="display: none"/>
3023             <span class="caption">Schema Component Representation</span>
3024          </div>
3025          <div id="h-853091232_scbox" class="contents">
3026             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3027                <span class="scTag">name</span>="<span class="scContent">Id</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
3028                      <span class="scTag">base</span>="<span class="scContent">
3029                         <span class="type">
3030                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3031                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3032                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3033                            <span class="type">
3034                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3035                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3036          </div>
3037          <script type="text/javascript">
3038 <!--
3039           setState('h-853091232_scbox', false);
3040 // -->
3041 </script>
3042       </div>
3043       <div style="text-align: right; clear: both;">
3044          <a href="#top">top</a>
3045       </div>
3046       <hr/>
3047       <h3>Complex Type: <a name="h535307528" class="name">Phylogeny</a>
3048       </h3>
3049       <table class="hierarchy">
3050          <tr>
3051             <th>Super-types:</th>
3052             <td>None</td>
3053          </tr>
3054          <tr>
3055             <th>Sub-types:</th>
3056             <td>None</td>
3057          </tr>
3058       </table>
3059       <table class="properties">
3060          <tr>
3061             <th>Name</th>
3062             <td>Phylogeny</td>
3063          </tr>
3064          <tr>
3065             <th>Used by (from the same schema document)</th>
3066             <td>Complex Type <b>
3067                   <a href="#h155831896">Phyloxml</a>
3068                </b>
3069             </td>
3070          </tr>
3071          <tr>
3072             <th>
3073                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3074             </th>
3075             <td>no</td>
3076          </tr>
3077          <tr>
3078             <th>Documentation</th>
3079             <td class="documentation"> Element Phylogeny is used to represent a phylogeny. The required attribute 'rooted' is used
3080             to indicate whether the phylogeny is rooted or not. The attribute 'rerootable' can be used to indicate that
3081             the phylogeny is not allowed to be rooted differently (i.e. because it is associated with root dependent
3082             data, such as gene duplications). The attribute 'type' can be used to indicate the type of phylogeny (i.e.
3083             'gene tree'). It is recommended to use the attribute 'branch_length_unit' if the phylogeny has branch
3084             lengths. Element clade is used in a recursive manner to describe the topology of a phylogenetic
3085          tree.</td>
3086          </tr>
3087       </table>
3088       <div class="sample box">
3089          <div>
3090             <input type="button" id="h535307528_xibox_button" class="control"
3091                    onclick="switchState('h535307528_xibox'); return false;"
3092                    style="display: none"/>
3093             <span class="caption">XML Instance Representation</span>
3094          </div>
3095          <div id="h535307528_xibox" class="contents">
3096             <div style="margin-left: 0em">&lt;...<br/>
3097                <span style="margin-left: 0.5em"> rooted="<span class="type">
3098                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3099                   <span class="occurs">[1]</span>"</span>
3100                <br/>
3101                <span style="margin-left: 0.5em"> rerootable="<span class="type">
3102                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3103                   <span class="occurs">[0..1]</span>"</span>
3104                <br/>
3105                <span style="margin-left: 0.5em"> branch_length_unit="<span class="type">
3106                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3107                   <span class="occurs">[0..1]</span>"</span>
3108                <br/>
3109                <span style="margin-left: 0.5em"> type="<span class="type">
3110                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3111                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3112                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
3113                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
3114                </div>
3115                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
3116                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3117                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
3118                </div>
3119                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description&gt; <span class="type">
3120                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description&gt; <span class="occurs">[0..1]</span>
3121                </div>
3122                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="type">
3123                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="occurs">[0..1]</span>
3124                </div>
3125                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
3126                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
3127                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..*]</span>
3128                </div>
3129                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="type">
3130                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
3131                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="occurs">[0..1]</span>
3132                </div>
3133                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation&gt; <span class="type">
3134                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CladeRelation&#34; type definition." href="#h192331856">CladeRelation</a>
3135                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation&gt; <span class="occurs">[0..*]</span>
3136                </div>
3137                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation&gt; <span class="type">
3138                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelation&#34; type definition." href="#h-802965662">SequenceRelation</a>
3139                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation&gt; <span class="occurs">[0..*]</span>
3140                </div>
3141                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="type">
3142                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
3143                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="occurs">[0..*]</span>
3144                </div>
3145                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3146                </div>&lt;/...&gt;</div>
3147          </div>
3148          <script type="text/javascript">
3149 <!--
3150           setState('h535307528_xibox', true);
3151 // -->
3152 </script>
3153       </div>
3154       <div class="sample box">
3155          <div>
3156             <input type="button" id="h535307528_diagram_button" class="control"
3157                    onclick="switchState('h535307528_diagram'); return false;"
3158                    style="display: none"/>
3159             <span class="caption">Diagram</span>
3160          </div>
3161          <div id="h535307528_diagram" class="contents">
3162             <img usemap="#h731810719" src="schemaDiagrams/h731810719.png"/>
3163             <!--
3164             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h731810719.map--><map name="h731810719">
3165                <area shape="rect" alt="h-853091232" coords="229,50,305,90"
3166                      href="phyloxml.xsd.html#h-853091232"/>
3167
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3170
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3173
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3181                      href="phyloxml.xsd.html#h158033242"/>
3182
3183             </map>
3184          </div>
3185          <script type="text/javascript">
3186 <!--
3187           setState('h535307528_diagram', true);
3188 // -->
3189 </script>
3190       </div>
3191       <div class="schemaComponent box">
3192          <div>
3193             <input type="button" id="h535307528_scbox_button" class="control"
3194                    onclick="switchState('h535307528_scbox'); return false;"
3195                    style="display: none"/>
3196             <span class="caption">Schema Component Representation</span>
3197          </div>
3198          <div id="h535307528_scbox" class="contents">
3199             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3200                <span class="scTag">name</span>="<span class="scContent">Phylogeny</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3201                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
3202                         <span class="type">
3203                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3204                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3205                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3206                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3207                         <span class="type">
3208                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3209                         </span>
3210                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3211                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3212                      <span class="scTag">name</span>="<span class="scContent">description</span>" <span class="scTag">type</span>="<span class="scContent">
3213                         <span class="type">
3214                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3215                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3216                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3217                      <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
3218                         <span class="type">
3219                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span>
3220                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3221                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3222                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3223                         <span class="type">
3224                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
3225                         </span>
3226                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3227                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3228                      <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
3229                         <span class="type">
3230                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
3231                         </span>
3232                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3233                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3234                      <span class="scTag">name</span>="<span class="scContent">clade_relation</span>" <span class="scTag">type</span>="<span class="scContent">
3235                         <span class="type">
3236                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CladeRelation&#34; type definition." href="#h192331856">CladeRelation</a>
3237                         </span>
3238                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3239                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3240                      <span class="scTag">name</span>="<span class="scContent">sequence_relation</span>" <span class="scTag">type</span>="<span class="scContent">
3241                         <span class="type">
3242                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelation&#34; type definition." href="#h-802965662">SequenceRelation</a>
3243                         </span>
3244                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3245                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3246                      <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
3247                         <span class="type">
3248                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
3249                         </span>
3250                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3251                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
3252                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3253                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3254                   <span class="scTag">name</span>="<span class="scContent">rooted</span>" <span class="scTag">type</span>="<span class="scContent">
3255                      <span class="type">
3256                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3257                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3258                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3259                   <span class="scTag">name</span>="<span class="scContent">rerootable</span>" <span class="scTag">type</span>="<span class="scContent">
3260                      <span class="type">
3261                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3262                   </span>"/&gt;</div>
3263                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3264                   <span class="scTag">name</span>="<span class="scContent">branch_length_unit</span>" <span class="scTag">type</span>="<span class="scContent">
3265                      <span class="type">
3266                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3267                   </span>"/&gt;</div>
3268                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3269                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3270                      <span class="type">
3271                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3272                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3273          </div>
3274          <script type="text/javascript">
3275 <!--
3276           setState('h535307528_scbox', false);
3277 // -->
3278 </script>
3279       </div>
3280       <div style="text-align: right; clear: both;">
3281          <a href="#top">top</a>
3282       </div>
3283       <hr/>
3284       <h3>Complex Type: <a name="h155831896" class="name">Phyloxml</a>
3285       </h3>
3286       <table class="hierarchy">
3287          <tr>
3288             <th>Super-types:</th>
3289             <td>None</td>
3290          </tr>
3291          <tr>
3292             <th>Sub-types:</th>
3293             <td>None</td>
3294          </tr>
3295       </table>
3296       <table class="properties">
3297          <tr>
3298             <th>Name</th>
3299             <td>Phyloxml</td>
3300          </tr>
3301          <tr>
3302             <th>Used by (from the same schema document)</th>
3303             <td>Element <b>
3304                   <a href="#h270234806">phyloxml</a>
3305                </b>
3306             </td>
3307          </tr>
3308          <tr>
3309             <th>
3310                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3311             </th>
3312             <td>no</td>
3313          </tr>
3314          <tr>
3315             <th>Documentation</th>
3316             <td class="documentation"> 'phyloxml' is the name of the root element. Phyloxml contains an arbitrary number of
3317             'phylogeny' elements (each representing one phylogeny) possibly followed by elements from other namespaces.
3318          </td>
3319          </tr>
3320       </table>
3321       <div class="sample box">
3322          <div>
3323             <input type="button" id="h155831896_xibox_button" class="control"
3324                    onclick="switchState('h155831896_xibox'); return false;"
3325                    style="display: none"/>
3326             <span class="caption">XML Instance Representation</span>
3327          </div>
3328          <div id="h155831896_xibox" class="contents">
3329             <div style="margin-left: 0em">&lt;...&gt; <br/>
3330                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
3331                   <span class="occurs">[1..*]</span>
3332                </span>
3333                <br/>
3334                <div style="margin-left: 3em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="type">
3335                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
3336                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="occurs">[0..*]</span>
3337                </div>
3338                <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3339                </div>
3340                <span class="group" style="margin-left: 1.5em">End Sequence</span>
3341                <br/>&lt;/...&gt;</div>
3342          </div>
3343          <script type="text/javascript">
3344 <!--
3345           setState('h155831896_xibox', true);
3346 // -->
3347 </script>
3348       </div>
3349       <div class="sample box">
3350          <div>
3351             <input type="button" id="h155831896_diagram_button" class="control"
3352                    onclick="switchState('h155831896_diagram'); return false;"
3353                    style="display: none"/>
3354             <span class="caption">Diagram</span>
3355          </div>
3356          <div id="h155831896_diagram" class="contents">
3357             <img usemap="#h-354757553" src="schemaDiagrams/h-354757553.png"/>
3358             <!--
3359             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-354757553.map--><map name="h-354757553">
3360                <area shape="rect" alt="h535307528" coords="222,0,341,40"
3361                      href="phyloxml.xsd.html#h535307528"/>
3362
3363             </map>
3364          </div>
3365          <script type="text/javascript">
3366 <!--
3367           setState('h155831896_diagram', true);
3368 // -->
3369 </script>
3370       </div>
3371       <div class="schemaComponent box">
3372          <div>
3373             <input type="button" id="h155831896_scbox_button" class="control"
3374                    onclick="switchState('h155831896_scbox'); return false;"
3375                    style="display: none"/>
3376             <span class="caption">Schema Component Representation</span>
3377          </div>
3378          <div id="h155831896_scbox" class="contents">
3379             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3380                <span class="scTag">name</span>="<span class="scContent">Phyloxml</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>
3381                   <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3382                      <span class="scTag">name</span>="<span class="scContent">phylogeny</span>" <span class="scTag">type</span>="<span class="scContent">
3383                         <span class="type">
3384                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
3385                         </span>
3386                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3387                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
3388                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3389          </div>
3390          <script type="text/javascript">
3391 <!--
3392           setState('h155831896_scbox', false);
3393 // -->
3394 </script>
3395       </div>
3396       <div style="text-align: right; clear: both;">
3397          <a href="#top">top</a>
3398       </div>
3399       <hr/>
3400       <h3>Complex Type: <a name="h-1112505301" class="name">Point</a>
3401       </h3>
3402       <table class="hierarchy">
3403          <tr>
3404             <th>Super-types:</th>
3405             <td>None</td>
3406          </tr>
3407          <tr>
3408             <th>Sub-types:</th>
3409             <td>None</td>
3410          </tr>
3411       </table>
3412       <table class="properties">
3413          <tr>
3414             <th>Name</th>
3415             <td>Point</td>
3416          </tr>
3417          <tr>
3418             <th>Used by (from the same schema document)</th>
3419             <td>Complex Type <b>
3420                   <a href="#h-979596407">Distribution</a>
3421                </b>, Complex Type <b>
3422                   <a href="#h332351765">Polygon</a>
3423                </b>
3424             </td>
3425          </tr>
3426          <tr>
3427             <th>
3428                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3429             </th>
3430             <td>no</td>
3431          </tr>
3432          <tr>
3433             <th>Documentation</th>
3434             <td class="documentation"> The coordinates of a point with an optional altitude (used by element 'Distribution').
3435             Required attribute 'geodetic_datum' is used to indicate the geodetic datum (also called 'map datum'), for
3436             example Google's KML uses 'WGS84'. </td>
3437          </tr>
3438       </table>
3439       <div class="sample box">
3440          <div>
3441             <input type="button" id="h-1112505301_xibox_button" class="control"
3442                    onclick="switchState('h-1112505301_xibox'); return false;"
3443                    style="display: none"/>
3444             <span class="caption">XML Instance Representation</span>
3445          </div>
3446          <div id="h-1112505301_xibox" class="contents">
3447             <div style="margin-left: 0em">&lt;...<br/>
3448                <span style="margin-left: 0.5em"> geodetic_datum="<span class="type">
3449                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3450                   <span class="occurs">[1]</span>"</span>&gt; <br/>
3451                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lat&gt; <span class="type">
3452                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lat&gt; <span class="occurs">[1]</span>
3453                </div>
3454                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:long&gt; <span class="type">
3455                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:long&gt; <span class="occurs">[1]</span>
3456                </div>
3457                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:alt&gt; <span class="type">
3458                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:alt&gt; <span class="occurs">[0..1]</span>
3459                </div>&lt;/...&gt;</div>
3460          </div>
3461          <script type="text/javascript">
3462 <!--
3463           setState('h-1112505301_xibox', true);
3464 // -->
3465 </script>
3466       </div>
3467       <div class="sample box">
3468          <div>
3469             <input type="button" id="h-1112505301_diagram_button" class="control"
3470                    onclick="switchState('h-1112505301_diagram'); return false;"
3471                    style="display: none"/>
3472             <span class="caption">Diagram</span>
3473          </div>
3474          <div id="h-1112505301_diagram" class="contents">
3475             <img usemap="#h2137002076" src="schemaDiagrams/h2137002076.png"/>
3476             <!--
3477             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h2137002076.map--><map name="h2137002076">
3478 </map>
3479          </div>
3480          <script type="text/javascript">
3481 <!--
3482           setState('h-1112505301_diagram', true);
3483 // -->
3484 </script>
3485       </div>
3486       <div class="schemaComponent box">
3487          <div>
3488             <input type="button" id="h-1112505301_scbox_button" class="control"
3489                    onclick="switchState('h-1112505301_scbox'); return false;"
3490                    style="display: none"/>
3491             <span class="caption">Schema Component Representation</span>
3492          </div>
3493          <div id="h-1112505301_scbox" class="contents">
3494             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3495                <span class="scTag">name</span>="<span class="scContent">Point</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3496                      <span class="scTag">name</span>="<span class="scContent">lat</span>" <span class="scTag">type</span>="<span class="scContent">
3497                         <span class="type">
3498                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3499                      </span>"/&gt;</div>
3500                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3501                      <span class="scTag">name</span>="<span class="scContent">long</span>" <span class="scTag">type</span>="<span class="scContent">
3502                         <span class="type">
3503                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3504                      </span>"/&gt;</div>
3505                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3506                      <span class="scTag">name</span>="<span class="scContent">alt</span>" <span class="scTag">type</span>="<span class="scContent">
3507                         <span class="type">
3508                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3509                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3510                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3511                   <span class="scTag">name</span>="<span class="scContent">geodetic_datum</span>" <span class="scTag">type</span>="<span class="scContent">
3512                      <span class="type">
3513                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3514                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3515          </div>
3516          <script type="text/javascript">
3517 <!--
3518           setState('h-1112505301_scbox', false);
3519 // -->
3520 </script>
3521       </div>
3522       <div style="text-align: right; clear: both;">
3523          <a href="#top">top</a>
3524       </div>
3525       <hr/>
3526       <h3>Complex Type: <a name="h332351765" class="name">Polygon</a>
3527       </h3>
3528       <table class="hierarchy">
3529          <tr>
3530             <th>Super-types:</th>
3531             <td>None</td>
3532          </tr>
3533          <tr>
3534             <th>Sub-types:</th>
3535             <td>None</td>
3536          </tr>
3537       </table>
3538       <table class="properties">
3539          <tr>
3540             <th>Name</th>
3541             <td>Polygon</td>
3542          </tr>
3543          <tr>
3544             <th>Used by (from the same schema document)</th>
3545             <td>Complex Type <b>
3546                   <a href="#h-979596407">Distribution</a>
3547                </b>
3548             </td>
3549          </tr>
3550          <tr>
3551             <th>
3552                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3553             </th>
3554             <td>no</td>
3555          </tr>
3556          <tr>
3557             <th>Documentation</th>
3558             <td class="documentation"> A polygon defined by a list of 'Points' (used by element 'Distribution').
3559          </td>
3560          </tr>
3561       </table>
3562       <div class="sample box">
3563          <div>
3564             <input type="button" id="h332351765_xibox_button" class="control"
3565                    onclick="switchState('h332351765_xibox'); return false;"
3566                    style="display: none"/>
3567             <span class="caption">XML Instance Representation</span>
3568          </div>
3569          <div id="h332351765_xibox" class="contents">
3570             <div style="margin-left: 0em">&lt;...&gt; <br/>
3571                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="type">
3572                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
3573                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="occurs">[3..*]</span>
3574                </div>&lt;/...&gt;</div>
3575          </div>
3576          <script type="text/javascript">
3577 <!--
3578           setState('h332351765_xibox', true);
3579 // -->
3580 </script>
3581       </div>
3582       <div class="sample box">
3583          <div>
3584             <input type="button" id="h332351765_diagram_button" class="control"
3585                    onclick="switchState('h332351765_diagram'); return false;"
3586                    style="display: none"/>
3587             <span class="caption">Diagram</span>
3588          </div>
3589          <div id="h332351765_diagram" class="contents">
3590             <img usemap="#h555770290" src="schemaDiagrams/h555770290.png"/>
3591             <!--
3592             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h555770290.map--><map name="h555770290">
3593                <area shape="rect" alt="h-1112505301" coords="215,0,306,40"
3594                      href="phyloxml.xsd.html#h-1112505301"/>
3595
3596             </map>
3597          </div>
3598          <script type="text/javascript">
3599 <!--
3600           setState('h332351765_diagram', true);
3601 // -->
3602 </script>
3603       </div>
3604       <div class="schemaComponent box">
3605          <div>
3606             <input type="button" id="h332351765_scbox_button" class="control"
3607                    onclick="switchState('h332351765_scbox'); return false;"
3608                    style="display: none"/>
3609             <span class="caption">Schema Component Representation</span>
3610          </div>
3611          <div id="h332351765_scbox" class="contents">
3612             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3613                <span class="scTag">name</span>="<span class="scContent">Polygon</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3614                      <span class="scTag">name</span>="<span class="scContent">point</span>" <span class="scTag">type</span>="<span class="scContent">
3615                         <span class="type">
3616                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
3617                         </span>
3618                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">3</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3619          </div>
3620          <script type="text/javascript">
3621 <!--
3622           setState('h332351765_scbox', false);
3623 // -->
3624 </script>
3625       </div>
3626       <div style="text-align: right; clear: both;">
3627          <a href="#top">top</a>
3628       </div>
3629       <hr/>
3630       <h3>Complex Type: <a name="h158033242" class="name">Property</a>
3631       </h3>
3632       <table class="hierarchy">
3633          <tr>
3634             <th>Super-types:</th>
3635             <td>None</td>
3636          </tr>
3637          <tr>
3638             <th>Sub-types:</th>
3639             <td>None</td>
3640          </tr>
3641       </table>
3642       <table class="properties">
3643          <tr>
3644             <th>Name</th>
3645             <td>Property</td>
3646          </tr>
3647          <tr>
3648             <th>Used by (from the same schema document)</th>
3649             <td>Complex Type <b>
3650                   <a href="#h535307528">Phylogeny</a>
3651                </b>, Complex Type <b>
3652                   <a href="#h-1124608460">Clade</a>
3653                </b>, Complex Type <b>
3654                   <a href="#h917087604">Annotation</a>
3655                </b>
3656             </td>
3657          </tr>
3658          <tr>
3659             <th>
3660                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3661             </th>
3662             <td>no</td>
3663          </tr>
3664          <tr>
3665             <th>Documentation</th>
3666             <td class="documentation"> Property allows for typed and referenced properties from external resources to be attached
3667             to 'Phylogeny', 'Clade', and 'Annotation'. The value of a property is its mixed (free text) content.
3668             Attribute 'datatype' indicates the type of a property and is limited to xsd-datatypes (e.g. 'xsd:string',
3669             'xsd:boolean', 'xsd:integer', 'xsd:decimal', 'xsd:float', 'xsd:double', 'xsd:date', 'xsd:anyURI'). Attribute
3670             'applies_to' indicates the item to which a property applies to (e.g. 'node' for the parent node of a clade,
3671             'parent_branch' for the parent branch of a clade). Attribute 'id_ref' allows to attached a property
3672             specifically to one element (on the xml-level). Optional attribute 'unit' is used to indicate the unit of
3673             the property. An example: &lt;property datatype="xsd:integer" ref="NOAA:depth" applies_to="clade"
3674             unit="METRIC:m"&gt; 200 &lt;/property&gt; </td>
3675          </tr>
3676       </table>
3677       <div class="sample box">
3678          <div>
3679             <input type="button" id="h158033242_xibox_button" class="control"
3680                    onclick="switchState('h158033242_xibox'); return false;"
3681                    style="display: none"/>
3682             <span class="caption">XML Instance Representation</span>
3683          </div>
3684          <div id="h158033242_xibox" class="contents">
3685             <div style="margin-left: 0em">&lt;...<br/>
3686                <span style="margin-left: 0.5em"> ref="<span class="type">
3687                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3688                   </span>
3689                   <span class="occurs">[1]</span>"</span>
3690                <br/>
3691                <span style="margin-left: 0.5em"> unit="<span class="type">
3692                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3693                   </span>
3694                   <span class="occurs">[0..1]</span>"</span>
3695                <br/>
3696                <span style="margin-left: 0.5em"> datatype="<span class="type">
3697                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;PropertyDataType&#34; type definition." href="#h-54338178">PropertyDataType</a>
3698                   </span>
3699                   <span class="occurs">[1]</span>"</span>
3700                <br/>
3701                <span style="margin-left: 0.5em"> applies_to="<span class="type">
3702                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;AppliesTo&#34; type definition." href="#h-763252414">AppliesTo</a>
3703                   </span>
3704                   <span class="occurs">[1]</span>"</span>
3705                <br/>
3706                <span style="margin-left: 0.5em"> id_ref="<span class="type">
3707                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3708                   </span>
3709                   <span class="occurs">[0..1]</span>"</span>/&gt; </div>
3710          </div>
3711          <script type="text/javascript">
3712 <!--
3713           setState('h158033242_xibox', true);
3714 // -->
3715 </script>
3716       </div>
3717       <div class="sample box">
3718          <div>
3719             <input type="button" id="h158033242_diagram_button" class="control"
3720                    onclick="switchState('h158033242_diagram'); return false;"
3721                    style="display: none"/>
3722             <span class="caption">Diagram</span>
3723          </div>
3724          <div id="h158033242_diagram" class="contents">
3725             <img usemap="#h-411495795" src="schemaDiagrams/h-411495795.png"/>
3726             <!--
3727             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-411495795.map--><map name="h-411495795">
3728                <area shape="rect" alt="h-675984882" coords="136,0,231,26"
3729                      href="phyloxml.xsd.html#h-675984882"/>
3730
3731                <area shape="rect" alt="h-675984882" coords="136,36,238,62"
3732                      href="phyloxml.xsd.html#h-675984882"/>
3733
3734                <area shape="rect" alt="h-54338178" coords="136,72,266,98"
3735                      href="phyloxml.xsd.html#h-54338178"/>
3736
3737                <area shape="rect" alt="h-763252414" coords="136,108,280,134"
3738                      href="phyloxml.xsd.html#h-763252414"/>
3739
3740                <area shape="rect" alt="h577349652" coords="136,144,252,170"
3741                      href="phyloxml.xsd.html#h577349652"/>
3742
3743             </map>
3744          </div>
3745          <script type="text/javascript">
3746 <!--
3747           setState('h158033242_diagram', true);
3748 // -->
3749 </script>
3750       </div>
3751       <div class="schemaComponent box">
3752          <div>
3753             <input type="button" id="h158033242_scbox_button" class="control"
3754                    onclick="switchState('h158033242_scbox'); return false;"
3755                    style="display: none"/>
3756             <span class="caption">Schema Component Representation</span>
3757          </div>
3758          <div id="h158033242_scbox" class="contents">
3759             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3760                <span class="scTag">name</span>="<span class="scContent">Property</span>" <span class="scTag">mixed</span>="<span class="scContent">true</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3761                   <span class="scTag">name</span>="<span class="scContent">ref</span>" <span class="scTag">type</span>="<span class="scContent">
3762                      <span class="type">
3763                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3764                      </span>
3765                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3766                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3767                   <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
3768                      <span class="type">
3769                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3770                      </span>
3771                   </span>"/&gt;</div>
3772                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3773                   <span class="scTag">name</span>="<span class="scContent">datatype</span>" <span class="scTag">type</span>="<span class="scContent">
3774                      <span class="type">
3775                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;PropertyDataType&#34; type definition." href="#h-54338178">PropertyDataType</a>
3776                      </span>
3777                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3778                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3779                   <span class="scTag">name</span>="<span class="scContent">applies_to</span>" <span class="scTag">type</span>="<span class="scContent">
3780                      <span class="type">
3781                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;AppliesTo&#34; type definition." href="#h-763252414">AppliesTo</a>
3782                      </span>
3783                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3784                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3785                   <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
3786                      <span class="type">
3787                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3788                      </span>
3789                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3790          </div>
3791          <script type="text/javascript">
3792 <!--
3793           setState('h158033242_scbox', false);
3794 // -->
3795 </script>
3796       </div>
3797       <div style="text-align: right; clear: both;">
3798          <a href="#top">top</a>
3799       </div>
3800       <hr/>
3801       <h3>Complex Type: <a name="h-1389097534" class="name">ProteinDomain</a>
3802       </h3>
3803       <table class="hierarchy">
3804          <tr>
3805             <th>Super-types:</th>
3806             <td>
3807                <span class="type">
3808                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>ProteinDomain</strong> (by extension)</td>
3809          </tr>
3810          <tr>
3811             <th>Sub-types:</th>
3812             <td>None</td>
3813          </tr>
3814       </table>
3815       <table class="properties">
3816          <tr>
3817             <th>Name</th>
3818             <td>ProteinDomain</td>
3819          </tr>
3820          <tr>
3821             <th>Used by (from the same schema document)</th>
3822             <td>Complex Type <b>
3823                   <a href="#h259010940">DomainArchitecture</a>
3824                </b>
3825             </td>
3826          </tr>
3827          <tr>
3828             <th>
3829                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3830             </th>
3831             <td>no</td>
3832          </tr>
3833          <tr>
3834             <th>Documentation</th>
3835             <td class="documentation"> To represent an individual domain in a domain architecture. The name/unique identifier is
3836             described via the 'id' attribute. 'confidence' can be used to store (i.e.) E-values.</td>
3837          </tr>
3838       </table>
3839       <div class="sample box">
3840          <div>
3841             <input type="button" id="h-1389097534_xibox_button" class="control"
3842                    onclick="switchState('h-1389097534_xibox'); return false;"
3843                    style="display: none"/>
3844             <span class="caption">XML Instance Representation</span>
3845          </div>
3846          <div id="h-1389097534_xibox" class="contents">
3847             <div style="margin-left: 0em">&lt;...<br/>
3848                <span style="margin-left: 0.5em" class="newFields"> from="<span class="type">
3849                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3850                   <span class="occurs">[1]</span>"</span>
3851                <br/>
3852                <span style="margin-left: 0.5em" class="newFields"> to="<span class="type">
3853                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3854                   <span class="occurs">[1]</span>"</span>
3855                <br/>
3856                <span style="margin-left: 0.5em" class="newFields"> confidence="<span class="type">
3857                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3858                   <span class="occurs">[0..1]</span>"</span>
3859                <br/>
3860                <span style="margin-left: 0.5em" class="newFields"> id="<span class="type">
3861                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3862                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3863                <span style="margin-left: 1.5em">
3864                   <span class="type">
3865                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3866                </span>
3867                <br/>&lt;/...&gt;</div>
3868          </div>
3869          <script type="text/javascript">
3870 <!--
3871           setState('h-1389097534_xibox', true);
3872 // -->
3873 </script>
3874       </div>
3875       <div class="sample box">
3876          <div>
3877             <input type="button" id="h-1389097534_diagram_button" class="control"
3878                    onclick="switchState('h-1389097534_diagram'); return false;"
3879                    style="display: none"/>
3880             <span class="caption">Diagram</span>
3881          </div>
3882          <div id="h-1389097534_diagram" class="contents">
3883             <img usemap="#h1501379365" src="schemaDiagrams/h1501379365.png"/>
3884             <!--
3885             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h1501379365.map--><map name="h1501379365">
3886 </map>
3887          </div>
3888          <script type="text/javascript">
3889 <!--
3890           setState('h-1389097534_diagram', true);
3891 // -->
3892 </script>
3893       </div>
3894       <div class="schemaComponent box">
3895          <div>
3896             <input type="button" id="h-1389097534_scbox_button" class="control"
3897                    onclick="switchState('h-1389097534_scbox'); return false;"
3898                    style="display: none"/>
3899             <span class="caption">Schema Component Representation</span>
3900          </div>
3901          <div id="h-1389097534_scbox" class="contents">
3902             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3903                <span class="scTag">name</span>="<span class="scContent">ProteinDomain</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
3904                      <span class="scTag">base</span>="<span class="scContent">
3905                         <span class="type">
3906                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3907                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3908                         <span class="scTag">name</span>="<span class="scContent">from</span>" <span class="scTag">type</span>="<span class="scContent">
3909                            <span class="type">
3910                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3911                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3912                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3913                         <span class="scTag">name</span>="<span class="scContent">to</span>" <span class="scTag">type</span>="<span class="scContent">
3914                            <span class="type">
3915                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3916                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3917                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3918                         <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3919                            <span class="type">
3920                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3921                         </span>"/&gt;</div>
3922                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3923                         <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3924                            <span class="type">
3925                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3926                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3927          </div>
3928          <script type="text/javascript">
3929 <!--
3930           setState('h-1389097534_scbox', false);
3931 // -->
3932 </script>
3933       </div>
3934       <div style="text-align: right; clear: both;">
3935          <a href="#top">top</a>
3936       </div>
3937       <hr/>
3938       <h3>Complex Type: <a name="h401516646" class="name">Reference</a>
3939       </h3>
3940       <table class="hierarchy">
3941          <tr>
3942             <th>Super-types:</th>
3943             <td>None</td>
3944          </tr>
3945          <tr>
3946             <th>Sub-types:</th>
3947             <td>None</td>
3948          </tr>
3949       </table>
3950       <table class="properties">
3951          <tr>
3952             <th>Name</th>
3953             <td>Reference</td>
3954          </tr>
3955          <tr>
3956             <th>Used by (from the same schema document)</th>
3957             <td>Complex Type <b>
3958                   <a href="#h-1124608460">Clade</a>
3959                </b>
3960             </td>
3961          </tr>
3962          <tr>
3963             <th>
3964                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3965             </th>
3966             <td>no</td>
3967          </tr>
3968          <tr>
3969             <th>Documentation</th>
3970             <td class="documentation"> A literature reference for a clade. It is recommended to use the 'doi' attribute instead of
3971             the free text 'desc' element whenever possible. </td>
3972          </tr>
3973       </table>
3974       <div class="sample box">
3975          <div>
3976             <input type="button" id="h401516646_xibox_button" class="control"
3977                    onclick="switchState('h401516646_xibox'); return false;"
3978                    style="display: none"/>
3979             <span class="caption">XML Instance Representation</span>
3980          </div>
3981          <div id="h401516646_xibox" class="contents">
3982             <div style="margin-left: 0em">&lt;...<br/>
3983                <span style="margin-left: 0.5em"> doi="<span class="type">
3984                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Doi&#34; type definition." href="#h-676028775">Doi</a>
3985                   </span>
3986                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3987                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
3988                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
3989                </div>&lt;/...&gt;</div>
3990          </div>
3991          <script type="text/javascript">
3992 <!--
3993           setState('h401516646_xibox', true);
3994 // -->
3995 </script>
3996       </div>
3997       <div class="sample box">
3998          <div>
3999             <input type="button" id="h401516646_diagram_button" class="control"
4000                    onclick="switchState('h401516646_diagram'); return false;"
4001                    style="display: none"/>
4002             <span class="caption">Diagram</span>
4003          </div>
4004          <div id="h401516646_diagram" class="contents">
4005             <img usemap="#h1727164161" src="schemaDiagrams/h1727164161.png"/>
4006             <!--
4007             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h1727164161.map--><map name="h1727164161">
4008                <area shape="rect" alt="h-676028775" coords="143,50,238,76"
4009                      href="phyloxml.xsd.html#h-676028775"/>
4010
4011             </map>
4012          </div>
4013          <script type="text/javascript">
4014 <!--
4015           setState('h401516646_diagram', true);
4016 // -->
4017 </script>
4018       </div>
4019       <div class="schemaComponent box">
4020          <div>
4021             <input type="button" id="h401516646_scbox_button" class="control"
4022                    onclick="switchState('h401516646_scbox'); return false;"
4023                    style="display: none"/>
4024             <span class="caption">Schema Component Representation</span>
4025          </div>
4026          <div id="h401516646_scbox" class="contents">
4027             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4028                <span class="scTag">name</span>="<span class="scContent">Reference</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4029                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
4030                         <span class="type">
4031                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4032                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4033                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4034                   <span class="scTag">name</span>="<span class="scContent">doi</span>" <span class="scTag">type</span>="<span class="scContent">
4035                      <span class="type">
4036                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Doi&#34; type definition." href="#h-676028775">Doi</a>
4037                      </span>
4038                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4039          </div>
4040          <script type="text/javascript">
4041 <!--
4042           setState('h401516646_scbox', false);
4043 // -->
4044 </script>
4045       </div>
4046       <div style="text-align: right; clear: both;">
4047          <a href="#top">top</a>
4048       </div>
4049       <hr/>
4050       <h3>Complex Type: <a name="h-1794244794" class="name">Sequence</a>
4051       </h3>
4052       <table class="hierarchy">
4053          <tr>
4054             <th>Super-types:</th>
4055             <td>None</td>
4056          </tr>
4057          <tr>
4058             <th>Sub-types:</th>
4059             <td>None</td>
4060          </tr>
4061       </table>
4062       <table class="properties">
4063          <tr>
4064             <th>Name</th>
4065             <td>Sequence</td>
4066          </tr>
4067          <tr>
4068             <th>Used by (from the same schema document)</th>
4069             <td>Complex Type <b>
4070                   <a href="#h-1124608460">Clade</a>
4071                </b>
4072             </td>
4073          </tr>
4074          <tr>
4075             <th>
4076                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4077             </th>
4078             <td>no</td>
4079          </tr>
4080          <tr>
4081             <th>Documentation</th>
4082             <td class="documentation"> Element Sequence is used to represent a molecular sequence (Protein, DNA, RNA) associated
4083             with a node. 'symbol' is a short (maximal ten characters) symbol of the sequence (e.g. 'ACTM') whereas
4084             'name' is used for the full name (e.g. 'muscle Actin'). 'location' is used for the location of a sequence on
4085             a genome/chromosome. The actual sequence can be stored with the 'mol_seq' element. Attribute 'type' is used
4086             to indicate the type of sequence ('dna', 'rna', or 'aa'). One intended use for 'id_ref' is to link a
4087             sequence to a taxonomy (via the taxonomy's 'id_source') in case of multiple sequences and taxonomies per
4088             node. </td>
4089          </tr>
4090       </table>
4091       <div class="sample box">
4092          <div>
4093             <input type="button" id="h-1794244794_xibox_button" class="control"
4094                    onclick="switchState('h-1794244794_xibox'); return false;"
4095                    style="display: none"/>
4096             <span class="caption">XML Instance Representation</span>
4097          </div>
4098          <div id="h-1794244794_xibox" class="contents">
4099             <div style="margin-left: 0em">&lt;...<br/>
4100                <span style="margin-left: 0.5em"> type="<span class="type">
4101                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceType&#34; type definition." href="#h1408823200">SequenceType</a>
4102                   </span>
4103                   <span class="occurs">[0..1]</span>"</span>
4104                <br/>
4105                <span style="margin-left: 0.5em"> id_source="<span class="type">
4106                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4107                   </span>
4108                   <span class="occurs">[0..1]</span>"</span>
4109                <br/>
4110                <span style="margin-left: 0.5em"> id_ref="<span class="type">
4111                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4112                   </span>
4113                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4114                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:symbol&gt; <span class="type">
4115                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceSymbol&#34; type definition." href="#h935679102">SequenceSymbol</a>
4116                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:symbol&gt; <span class="occurs">[0..1]</span>
4117                </div>
4118                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession&gt; <span class="type">
4119                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Accession&#34; type definition." href="#h-788356801">Accession</a>
4120                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession&gt; <span class="occurs">[0..1]</span>
4121                </div>
4122                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
4123                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
4124                </div>
4125                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location&gt; <span class="type">
4126                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location&gt; <span class="occurs">[0..1]</span>
4127                </div>
4128                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq&gt; <span class="type">
4129                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;MolSeq&#34; type definition." href="#h-213750342">MolSeq</a>
4130                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq&gt; <span class="occurs">[0..1]</span>
4131                </div>
4132                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
4133                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4134                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
4135                </div>
4136                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation&gt; <span class="type">
4137                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Annotation&#34; type definition." href="#h917087604">Annotation</a>
4138                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation&gt; <span class="occurs">[0..*]</span>
4139                </div>
4140                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture&gt; <span class="type">
4141                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;DomainArchitecture&#34; type definition." href="#h259010940">DomainArchitecture</a>
4142                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture&gt; <span class="occurs">[0..1]</span>
4143                </div>
4144                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
4145                </div>&lt;/...&gt;</div>
4146          </div>
4147          <script type="text/javascript">
4148 <!--
4149           setState('h-1794244794_xibox', true);
4150 // -->
4151 </script>
4152       </div>
4153       <div class="sample box">
4154          <div>
4155             <input type="button" id="h-1794244794_diagram_button" class="control"
4156                    onclick="switchState('h-1794244794_diagram'); return false;"
4157                    style="display: none"/>
4158             <span class="caption">Diagram</span>
4159          </div>
4160          <div id="h-1794244794_diagram" class="contents">
4161             <img usemap="#h1156064289" src="schemaDiagrams/h1156064289.png"/>
4162             <!--
4163             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h1156064289.map--><map name="h1156064289">
4164                <area shape="rect" alt="h935679102" coords="222,0,320,40"
4165                      href="phyloxml.xsd.html#h935679102"/>
4166
4167                <area shape="rect" alt="h-788356801" coords="222,50,341,90"
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4169
4170                <area shape="rect" alt="h-213750342" coords="222,200,327,240"
4171                      href="phyloxml.xsd.html#h-213750342"/>
4172
4173                <area shape="rect" alt="h-676012345" coords="222,250,299,290"
4174                      href="phyloxml.xsd.html#h-676012345"/>
4175
4176                <area shape="rect" alt="h917087604" coords="222,300,348,340"
4177                      href="phyloxml.xsd.html#h917087604"/>
4178
4179                <area shape="rect" alt="h259010940" coords="222,350,411,390"
4180                      href="phyloxml.xsd.html#h259010940"/>
4181
4182                <area shape="rect" alt="h1408823200" coords="136,451,238,477"
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4184
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4187
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4190
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4192          </div>
4193          <script type="text/javascript">
4194 <!--
4195           setState('h-1794244794_diagram', true);
4196 // -->
4197 </script>
4198       </div>
4199       <div class="schemaComponent box">
4200          <div>
4201             <input type="button" id="h-1794244794_scbox_button" class="control"
4202                    onclick="switchState('h-1794244794_scbox'); return false;"
4203                    style="display: none"/>
4204             <span class="caption">Schema Component Representation</span>
4205          </div>
4206          <div id="h-1794244794_scbox" class="contents">
4207             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4208                <span class="scTag">name</span>="<span class="scContent">Sequence</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4209                      <span class="scTag">name</span>="<span class="scContent">symbol</span>" <span class="scTag">type</span>="<span class="scContent">
4210                         <span class="type">
4211                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceSymbol&#34; type definition." href="#h935679102">SequenceSymbol</a>
4212                         </span>
4213                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4214                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4215                      <span class="scTag">name</span>="<span class="scContent">accession</span>" <span class="scTag">type</span>="<span class="scContent">
4216                         <span class="type">
4217                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Accession&#34; type definition." href="#h-788356801">Accession</a>
4218                         </span>
4219                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4220                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4221                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
4222                         <span class="type">
4223                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4224                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4225                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4226                      <span class="scTag">name</span>="<span class="scContent">location</span>" <span class="scTag">type</span>="<span class="scContent">
4227                         <span class="type">
4228                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4229                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4230                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4231                      <span class="scTag">name</span>="<span class="scContent">mol_seq</span>" <span class="scTag">type</span>="<span class="scContent">
4232                         <span class="type">
4233                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;MolSeq&#34; type definition." href="#h-213750342">MolSeq</a>
4234                         </span>
4235                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4236                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4237                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
4238                         <span class="type">
4239                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4240                         </span>
4241                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4242                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4243                      <span class="scTag">name</span>="<span class="scContent">annotation</span>" <span class="scTag">type</span>="<span class="scContent">
4244                         <span class="type">
4245                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Annotation&#34; type definition." href="#h917087604">Annotation</a>
4246                         </span>
4247                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
4248                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4249                      <span class="scTag">name</span>="<span class="scContent">domain_architecture</span>" <span class="scTag">type</span>="<span class="scContent">
4250                         <span class="type">
4251                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;DomainArchitecture&#34; type definition." href="#h259010940">DomainArchitecture</a>
4252                         </span>
4253                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4254                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
4255                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4256                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4257                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4258                      <span class="type">
4259                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceType&#34; type definition." href="#h1408823200">SequenceType</a>
4260                      </span>
4261                   </span>"/&gt;</div>
4262                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4263                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
4264                      <span class="type">
4265                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4266                      </span>
4267                   </span>"/&gt;</div>
4268                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4269                   <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
4270                      <span class="type">
4271                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4272                      </span>
4273                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4274          </div>
4275          <script type="text/javascript">
4276 <!--
4277           setState('h-1794244794_scbox', false);
4278 // -->
4279 </script>
4280       </div>
4281       <div style="text-align: right; clear: both;">
4282          <a href="#top">top</a>
4283       </div>
4284       <hr/>
4285       <h3>Complex Type: <a name="h-802965662" class="name">SequenceRelation</a>
4286       </h3>
4287       <table class="hierarchy">
4288          <tr>
4289             <th>Super-types:</th>
4290             <td>None</td>
4291          </tr>
4292          <tr>
4293             <th>Sub-types:</th>
4294             <td>None</td>
4295          </tr>
4296       </table>
4297       <table class="properties">
4298          <tr>
4299             <th>Name</th>
4300             <td>SequenceRelation</td>
4301          </tr>
4302          <tr>
4303             <th>Used by (from the same schema document)</th>
4304             <td>Complex Type <b>
4305                   <a href="#h535307528">Phylogeny</a>
4306                </b>
4307             </td>
4308          </tr>
4309          <tr>
4310             <th>
4311                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4312             </th>
4313             <td>no</td>
4314          </tr>
4315          <tr>
4316             <th>Documentation</th>
4317             <td class="documentation"> This is used to express a typed relationship between two sequences. For example it could be
4318             used to describe an orthology (in which case attribute 'type' is 'orthology'). </td>
4319          </tr>
4320       </table>
4321       <div class="sample box">
4322          <div>
4323             <input type="button" id="h-802965662_xibox_button" class="control"
4324                    onclick="switchState('h-802965662_xibox'); return false;"
4325                    style="display: none"/>
4326             <span class="caption">XML Instance Representation</span>
4327          </div>
4328          <div id="h-802965662_xibox" class="contents">
4329             <div style="margin-left: 0em">&lt;...<br/>
4330                <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
4331                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4332                   </span>
4333                   <span class="occurs">[1]</span>"</span>
4334                <br/>
4335                <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
4336                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4337                   </span>
4338                   <span class="occurs">[1]</span>"</span>
4339                <br/>
4340                <span style="margin-left: 0.5em"> distance="<span class="type">
4341                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4342                   <span class="occurs">[0..1]</span>"</span>
4343                <br/>
4344                <span style="margin-left: 0.5em"> type="<span class="type">
4345                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelationType&#34; type definition." href="#h519911868">SequenceRelationType</a>
4346                   </span>
4347                   <span class="occurs">[1]</span>"</span>&gt; <br/>
4348                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
4349                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
4350                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
4351                </div>&lt;/...&gt;</div>
4352          </div>
4353          <script type="text/javascript">
4354 <!--
4355           setState('h-802965662_xibox', true);
4356 // -->
4357 </script>
4358       </div>
4359       <div class="sample box">
4360          <div>
4361             <input type="button" id="h-802965662_diagram_button" class="control"
4362                    onclick="switchState('h-802965662_diagram'); return false;"
4363                    style="display: none"/>
4364             <span class="caption">Diagram</span>
4365          </div>
4366          <div id="h-802965662_diagram" class="contents">
4367             <img usemap="#h230020485" src="schemaDiagrams/h230020485.png"/>
4368             <!--
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4385 <!--
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4387 // -->
4388 </script>
4389       </div>
4390       <div class="schemaComponent box">
4391          <div>
4392             <input type="button" id="h-802965662_scbox_button" class="control"
4393                    onclick="switchState('h-802965662_scbox'); return false;"
4394                    style="display: none"/>
4395             <span class="caption">Schema Component Representation</span>
4396          </div>
4397          <div id="h-802965662_scbox" class="contents">
4398             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4399                <span class="scTag">name</span>="<span class="scContent">SequenceRelation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4400                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
4401                         <span class="type">
4402                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
4403                         </span>
4404                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4405                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4406                   <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
4407                      <span class="type">
4408                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4409                      </span>
4410                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
4411                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4412                   <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
4413                      <span class="type">
4414                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4415                      </span>
4416                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
4417                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4418                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
4419                      <span class="type">
4420                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4421                   </span>"/&gt;</div>
4422                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4423                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4424                      <span class="type">
4425                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelationType&#34; type definition." href="#h519911868">SequenceRelationType</a>
4426                      </span>
4427                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4428          </div>
4429          <script type="text/javascript">
4430 <!--
4431           setState('h-802965662_scbox', false);
4432 // -->
4433 </script>
4434       </div>
4435       <div style="text-align: right; clear: both;">
4436          <a href="#top">top</a>
4437       </div>
4438       <hr/>
4439       <h3>Complex Type: <a name="h888650454" class="name">Taxonomy</a>
4440       </h3>
4441       <table class="hierarchy">
4442          <tr>
4443             <th>Super-types:</th>
4444             <td>None</td>
4445          </tr>
4446          <tr>
4447             <th>Sub-types:</th>
4448             <td>None</td>
4449          </tr>
4450       </table>
4451       <table class="properties">
4452          <tr>
4453             <th>Name</th>
4454             <td>Taxonomy</td>
4455          </tr>
4456          <tr>
4457             <th>Used by (from the same schema document)</th>
4458             <td>Complex Type <b>
4459                   <a href="#h-1124608460">Clade</a>
4460                </b>
4461             </td>
4462          </tr>
4463          <tr>
4464             <th>
4465                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4466             </th>
4467             <td>no</td>
4468          </tr>
4469          <tr>
4470             <th>Documentation</th>
4471             <td class="documentation"> Element Taxonomy is used to describe taxonomic information for a clade. Element 'code' is
4472             intended to store UniProt/Swiss-Prot style organism codes (e.g. 'APLCA' for the California sea hare 'Aplysia
4473             californica'). Element 'id' is used for a unique identifier of a taxon (for example '6500' with
4474             'ncbi_taxonomy' as 'type' for the California sea hare). Attribute 'id_source' is used to link other elements
4475             to a taxonomy (on the xml-level).</td>
4476          </tr>
4477       </table>
4478       <div class="sample box">
4479          <div>
4480             <input type="button" id="h888650454_xibox_button" class="control"
4481                    onclick="switchState('h888650454_xibox'); return false;"
4482                    style="display: none"/>
4483             <span class="caption">XML Instance Representation</span>
4484          </div>
4485          <div id="h888650454_xibox" class="contents">
4486             <div style="margin-left: 0em">&lt;...<br/>
4487                <span style="margin-left: 0.5em"> type="<span class="type">
4488                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4489                   <span class="occurs">[0..1]</span>"</span>
4490                <br/>
4491                <span style="margin-left: 0.5em"> id_source="<span class="type">
4492                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4493                   </span>
4494                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4495                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
4496                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
4497                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
4498                </div>
4499                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code&gt; <span class="type">
4500                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;TaxonomyCode&#34; type definition." href="#h712147427">TaxonomyCode</a>
4501                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code&gt; <span class="occurs">[0..1]</span>
4502                </div>
4503                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name&gt; <span class="type">
4504                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name&gt; <span class="occurs">[0..1]</span>
4505                </div>
4506                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name&gt; <span class="type">
4507                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name&gt; <span class="occurs">[0..*]</span>
4508                </div>
4509                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank&gt; <span class="type">
4510                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Rank&#34; type definition." href="#h518348337">Rank</a>
4511                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank&gt; <span class="occurs">[0..1]</span>
4512                </div>
4513                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
4514                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4515                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
4516                </div>
4517                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
4518                </div>&lt;/...&gt;</div>
4519          </div>
4520          <script type="text/javascript">
4521 <!--
4522           setState('h888650454_xibox', true);
4523 // -->
4524 </script>
4525       </div>
4526       <div class="sample box">
4527          <div>
4528             <input type="button" id="h888650454_diagram_button" class="control"
4529                    onclick="switchState('h888650454_diagram'); return false;"
4530                    style="display: none"/>
4531             <span class="caption">Diagram</span>
4532          </div>
4533          <div id="h888650454_diagram" class="contents">
4534             <img usemap="#h992625297" src="schemaDiagrams/h992625297.png"/>
4535             <!--
4536             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h992625297.map--><map name="h992625297">
4537                <area shape="rect" alt="h-853091232" coords="222,0,298,40"
4538                      href="phyloxml.xsd.html#h-853091232"/>
4539
4540                <area shape="rect" alt="h712147427" coords="222,50,306,90"
4541                      href="phyloxml.xsd.html#h712147427"/>
4542
4543                <area shape="rect" alt="h518348337" coords="222,200,306,240"
4544                      href="phyloxml.xsd.html#h518348337"/>
4545
4546                <area shape="rect" alt="h-676012345" coords="222,250,299,290"
4547                      href="phyloxml.xsd.html#h-676012345"/>
4548
4549                <area shape="rect" alt="h-1482113798" coords="136,387,273,413"
4550                      href="phyloxml.xsd.html#h-1482113798"/>
4551
4552             </map>
4553          </div>
4554          <script type="text/javascript">
4555 <!--
4556           setState('h888650454_diagram', true);
4557 // -->
4558 </script>
4559       </div>
4560       <div class="schemaComponent box">
4561          <div>
4562             <input type="button" id="h888650454_scbox_button" class="control"
4563                    onclick="switchState('h888650454_scbox'); return false;"
4564                    style="display: none"/>
4565             <span class="caption">Schema Component Representation</span>
4566          </div>
4567          <div id="h888650454_scbox" class="contents">
4568             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4569                <span class="scTag">name</span>="<span class="scContent">Taxonomy</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4570                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
4571                         <span class="type">
4572                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
4573                         </span>
4574                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4575                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4576                      <span class="scTag">name</span>="<span class="scContent">code</span>" <span class="scTag">type</span>="<span class="scContent">
4577                         <span class="type">
4578                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;TaxonomyCode&#34; type definition." href="#h712147427">TaxonomyCode</a>
4579                         </span>
4580                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4581                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4582                      <span class="scTag">name</span>="<span class="scContent">scientific_name</span>" <span class="scTag">type</span>="<span class="scContent">
4583                         <span class="type">
4584                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4585                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4586                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4587                      <span class="scTag">name</span>="<span class="scContent">common_name</span>" <span class="scTag">type</span>="<span class="scContent">
4588                         <span class="type">
4589                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4590                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
4591                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4592                      <span class="scTag">name</span>="<span class="scContent">rank</span>" <span class="scTag">type</span>="<span class="scContent">
4593                         <span class="type">
4594                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Rank&#34; type definition." href="#h518348337">Rank</a>
4595                         </span>
4596                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4597                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4598                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
4599                         <span class="type">
4600                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4601                         </span>
4602                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4603                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
4604                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4605                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4606                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4607                      <span class="type">
4608                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4609                   </span>"/&gt;</div>
4610                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4611                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
4612                      <span class="type">
4613                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4614                      </span>
4615                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4616          </div>
4617          <script type="text/javascript">
4618 <!--
4619           setState('h888650454_scbox', false);
4620 // -->
4621 </script>
4622       </div>
4623       <div style="text-align: right; clear: both;">
4624          <a href="#top">top</a>
4625       </div>
4626       <hr/>
4627       <h3>Complex Type: <a name="h-676012345" class="name">Uri</a>
4628       </h3>
4629       <table class="hierarchy">
4630          <tr>
4631             <th>Super-types:</th>
4632             <td>
4633                <span class="type">
4634                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span> &lt; <strong>Uri</strong> (by extension)</td>
4635          </tr>
4636          <tr>
4637             <th>Sub-types:</th>
4638             <td>None</td>
4639          </tr>
4640       </table>
4641       <table class="properties">
4642          <tr>
4643             <th>Name</th>
4644             <td>Uri</td>
4645          </tr>
4646          <tr>
4647             <th>Used by (from the same schema document)</th>
4648             <td>Complex Type <b>
4649                   <a href="#h888650454">Taxonomy</a>
4650                </b>, Complex Type <b>
4651                   <a href="#h-1794244794">Sequence</a>
4652                </b>, Complex Type <b>
4653                   <a href="#h917087604">Annotation</a>
4654                </b>
4655             </td>
4656          </tr>
4657          <tr>
4658             <th>
4659                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4660             </th>
4661             <td>no</td>
4662          </tr>
4663          <tr>
4664             <th>Documentation</th>
4665             <td class="documentation"> A uniform resource identifier. In general, this is expected to be an URL (for example, to
4666             link to an image on a website, in which case the 'type' attribute might be 'image' and 'desc' might be
4667             'image of a California sea hare'). </td>
4668          </tr>
4669       </table>
4670       <div class="sample box">
4671          <div>
4672             <input type="button" id="h-676012345_xibox_button" class="control"
4673                    onclick="switchState('h-676012345_xibox'); return false;"
4674                    style="display: none"/>
4675             <span class="caption">XML Instance Representation</span>
4676          </div>
4677          <div id="h-676012345_xibox" class="contents">
4678             <div style="margin-left: 0em">&lt;...<br/>
4679                <span style="margin-left: 0.5em" class="newFields"> desc="<span class="type">
4680                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4681                   <span class="occurs">[0..1]</span>"</span>
4682                <br/>
4683                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
4684                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4685                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4686                <span style="margin-left: 1.5em">
4687                   <span class="type">
4688                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
4689                </span>
4690                <br/>&lt;/...&gt;</div>
4691          </div>
4692          <script type="text/javascript">
4693 <!--
4694           setState('h-676012345_xibox', true);
4695 // -->
4696 </script>
4697       </div>
4698       <div class="sample box">
4699          <div>
4700             <input type="button" id="h-676012345_diagram_button" class="control"
4701                    onclick="switchState('h-676012345_diagram'); return false;"
4702                    style="display: none"/>
4703             <span class="caption">Diagram</span>
4704          </div>
4705          <div id="h-676012345_diagram" class="contents">
4706             <img usemap="#h-1930055872" src="schemaDiagrams/h-1930055872.png"/>
4707             <!--
4708             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-1930055872.map--><map name="h-1930055872">
4709 </map>
4710          </div>
4711          <script type="text/javascript">
4712 <!--
4713           setState('h-676012345_diagram', true);
4714 // -->
4715 </script>
4716       </div>
4717       <div class="schemaComponent box">
4718          <div>
4719             <input type="button" id="h-676012345_scbox_button" class="control"
4720                    onclick="switchState('h-676012345_scbox'); return false;"
4721                    style="display: none"/>
4722             <span class="caption">Schema Component Representation</span>
4723          </div>
4724          <div id="h-676012345_scbox" class="contents">
4725             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4726                <span class="scTag">name</span>="<span class="scContent">Uri</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
4727                      <span class="scTag">base</span>="<span class="scContent">
4728                         <span class="type">
4729                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
4730                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4731                         <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
4732                            <span class="type">
4733                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4734                         </span>"/&gt;</div>
4735                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4736                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4737                            <span class="type">
4738                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4739                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4740          </div>
4741          <script type="text/javascript">
4742 <!--
4743           setState('h-676012345_scbox', false);
4744 // -->
4745 </script>
4746       </div>
4747       <div style="text-align: right; clear: both;">
4748          <a href="#top">top</a>
4749       </div>
4750       <hr/>
4751       <h3>Simple Type: <a name="h-763252414" class="name">AppliesTo</a>
4752       </h3>
4753       <table class="hierarchy">
4754          <tr>
4755             <th>Super-types:</th>
4756             <td>
4757                <span class="type">
4758                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>AppliesTo</strong> (by restriction)</td>
4759          </tr>
4760          <tr>
4761             <th>Sub-types:</th>
4762             <td>None</td>
4763          </tr>
4764       </table>
4765       <table class="properties">
4766          <tr>
4767             <th>Name</th>
4768             <td>AppliesTo</td>
4769          </tr>
4770          <tr>
4771             <th>Used by (from the same schema document)</th>
4772             <td>Complex Type <b>
4773                   <a href="#h158033242">Property</a>
4774                </b>
4775             </td>
4776          </tr>
4777          <tr>
4778             <th>Content</th>
4779             <td>
4780                <ul>
4781                   <li>Base XSD Type: token</li>
4782                </ul>
4783                <ul>
4784                   <li>
4785                      <em>value</em> comes from list: {'phylogeny'|'clade'|'node'|'annotation'|'parent_branch'|'other'}</li>
4786                </ul>
4787             </td>
4788          </tr>
4789       </table>
4790       <div class="sample box">
4791          <div>
4792             <input type="button" id="h-763252414_diagram_button" class="control"
4793                    onclick="switchState('h-763252414_diagram'); return false;"
4794                    style="display: none"/>
4795             <span class="caption">Diagram</span>
4796          </div>
4797          <div id="h-763252414_diagram" class="contents">
4798             <img usemap="#h-553597019" src="schemaDiagrams/h-553597019.png"/>
4799             <!--
4800             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-553597019.map--><map name="h-553597019">
4801 </map>
4802          </div>
4803          <script type="text/javascript">
4804 <!--
4805           setState('h-763252414_diagram', true);
4806 // -->
4807 </script>
4808       </div>
4809       <div class="schemaComponent box">
4810          <div>
4811             <input type="button" id="h-763252414_scbox_button" class="control"
4812                    onclick="switchState('h-763252414_scbox'); return false;"
4813                    style="display: none"/>
4814             <span class="caption">Schema Component Representation</span>
4815          </div>
4816          <div id="h-763252414_scbox" class="contents">
4817             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4818                <span class="scTag">name</span>="<span class="scContent">AppliesTo</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4819                   <span class="scTag">base</span>="<span class="scContent">
4820                      <span class="type">
4821                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4822                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4823                      <span class="scTag">value</span>="<span class="scContent">phylogeny</span>"/&gt;</div>
4824                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4825                      <span class="scTag">value</span>="<span class="scContent">clade</span>"/&gt;</div>
4826                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4827                      <span class="scTag">value</span>="<span class="scContent">node</span>"/&gt;</div>
4828                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4829                      <span class="scTag">value</span>="<span class="scContent">annotation</span>"/&gt;</div>
4830                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4831                      <span class="scTag">value</span>="<span class="scContent">parent_branch</span>"/&gt;</div>
4832                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4833                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4834          </div>
4835          <script type="text/javascript">
4836 <!--
4837           setState('h-763252414_scbox', false);
4838 // -->
4839 </script>
4840       </div>
4841       <div style="text-align: right; clear: both;">
4842          <a href="#top">top</a>
4843       </div>
4844       <hr/>
4845       <h3>Simple Type: <a name="h-676028775" class="name">Doi</a>
4846       </h3>
4847       <table class="hierarchy">
4848          <tr>
4849             <th>Super-types:</th>
4850             <td>
4851                <span class="type">
4852                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Doi</strong> (by restriction)</td>
4853          </tr>
4854          <tr>
4855             <th>Sub-types:</th>
4856             <td>None</td>
4857          </tr>
4858       </table>
4859       <table class="properties">
4860          <tr>
4861             <th>Name</th>
4862             <td>Doi</td>
4863          </tr>
4864          <tr>
4865             <th>Used by (from the same schema document)</th>
4866             <td>Complex Type <b>
4867                   <a href="#h401516646">Reference</a>
4868                </b>
4869             </td>
4870          </tr>
4871          <tr>
4872             <th>Content</th>
4873             <td>
4874                <ul>
4875                   <li>Base XSD Type: token</li>
4876                </ul>
4877                <ul>
4878                   <li>
4879                      <em>pattern</em> = [a-zA-Z0-9_\.]+/[a-zA-Z0-9_\.]+</li>
4880                </ul>
4881             </td>
4882          </tr>
4883       </table>
4884       <div class="sample box">
4885          <div>
4886             <input type="button" id="h-676028775_diagram_button" class="control"
4887                    onclick="switchState('h-676028775_diagram'); return false;"
4888                    style="display: none"/>
4889             <span class="caption">Diagram</span>
4890          </div>
4891          <div id="h-676028775_diagram" class="contents">
4892             <img usemap="#h-230267218" src="schemaDiagrams/h-230267218.png"/>
4893             <!--
4894             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-230267218.map--><map name="h-230267218">
4895 </map>
4896          </div>
4897          <script type="text/javascript">
4898 <!--
4899           setState('h-676028775_diagram', true);
4900 // -->
4901 </script>
4902       </div>
4903       <div class="schemaComponent box">
4904          <div>
4905             <input type="button" id="h-676028775_scbox_button" class="control"
4906                    onclick="switchState('h-676028775_scbox'); return false;"
4907                    style="display: none"/>
4908             <span class="caption">Schema Component Representation</span>
4909          </div>
4910          <div id="h-676028775_scbox" class="contents">
4911             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4912                <span class="scTag">name</span>="<span class="scContent">Doi</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4913                   <span class="scTag">base</span>="<span class="scContent">
4914                      <span class="type">
4915                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4916                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
4917                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_\.]+/[a-zA-Z0-9_\.]+</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4918          </div>
4919          <script type="text/javascript">
4920 <!--
4921           setState('h-676028775_scbox', false);
4922 // -->
4923 </script>
4924       </div>
4925       <div style="text-align: right; clear: both;">
4926          <a href="#top">top</a>
4927       </div>
4928       <hr/>
4929       <h3>Simple Type: <a name="h1358103055" class="name">EventType</a>
4930       </h3>
4931       <table class="hierarchy">
4932          <tr>
4933             <th>Super-types:</th>
4934             <td>
4935                <span class="type">
4936                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>EventType</strong> (by restriction)</td>
4937          </tr>
4938          <tr>
4939             <th>Sub-types:</th>
4940             <td>None</td>
4941          </tr>
4942       </table>
4943       <table class="properties">
4944          <tr>
4945             <th>Name</th>
4946             <td>EventType</td>
4947          </tr>
4948          <tr>
4949             <th>Used by (from the same schema document)</th>
4950             <td>Complex Type <b>
4951                   <a href="#h-436501026">Events</a>
4952                </b>
4953             </td>
4954          </tr>
4955          <tr>
4956             <th>Content</th>
4957             <td>
4958                <ul>
4959                   <li>Base XSD Type: token</li>
4960                </ul>
4961                <ul>
4962                   <li>
4963                      <em>value</em> comes from list: {'transfer'|'fusion'|'speciation_or_duplication'|'other'|'mixed'|'unassigned'}</li>
4964                </ul>
4965             </td>
4966          </tr>
4967       </table>
4968       <div class="sample box">
4969          <div>
4970             <input type="button" id="h1358103055_diagram_button" class="control"
4971                    onclick="switchState('h1358103055_diagram'); return false;"
4972                    style="display: none"/>
4973             <span class="caption">Diagram</span>
4974          </div>
4975          <div id="h1358103055_diagram" class="contents">
4976             <img usemap="#h77064440" src="schemaDiagrams/h77064440.png"/>
4977             <!--
4978             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h77064440.map--><map name="h77064440">
4979 </map>
4980          </div>
4981          <script type="text/javascript">
4982 <!--
4983           setState('h1358103055_diagram', true);
4984 // -->
4985 </script>
4986       </div>
4987       <div class="schemaComponent box">
4988          <div>
4989             <input type="button" id="h1358103055_scbox_button" class="control"
4990                    onclick="switchState('h1358103055_scbox'); return false;"
4991                    style="display: none"/>
4992             <span class="caption">Schema Component Representation</span>
4993          </div>
4994          <div id="h1358103055_scbox" class="contents">
4995             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4996                <span class="scTag">name</span>="<span class="scContent">EventType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4997                   <span class="scTag">base</span>="<span class="scContent">
4998                      <span class="type">
4999                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5000                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5001                      <span class="scTag">value</span>="<span class="scContent">transfer</span>"/&gt;</div>
5002                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5003                      <span class="scTag">value</span>="<span class="scContent">fusion</span>"/&gt;</div>
5004                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5005                      <span class="scTag">value</span>="<span class="scContent">speciation_or_duplication</span>"/&gt;</div>
5006                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5007                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>
5008                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5009                      <span class="scTag">value</span>="<span class="scContent">mixed</span>"/&gt;</div>
5010                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5011                      <span class="scTag">value</span>="<span class="scContent">unassigned</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5012          </div>
5013          <script type="text/javascript">
5014 <!--
5015           setState('h1358103055_scbox', false);
5016 // -->
5017 </script>
5018       </div>
5019       <div style="text-align: right; clear: both;">
5020          <a href="#top">top</a>
5021       </div>
5022       <hr/>
5023       <h3>Simple Type: <a name="h-213750342" class="name">MolSeq</a>
5024       </h3>
5025       <table class="hierarchy">
5026          <tr>
5027             <th>Super-types:</th>
5028             <td>
5029                <span class="type">
5030                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>MolSeq</strong> (by restriction)</td>
5031          </tr>
5032          <tr>
5033             <th>Sub-types:</th>
5034             <td>None</td>
5035          </tr>
5036       </table>
5037       <table class="properties">
5038          <tr>
5039             <th>Name</th>
5040             <td>MolSeq</td>
5041          </tr>
5042          <tr>
5043             <th>Used by (from the same schema document)</th>
5044             <td>Complex Type <b>
5045                   <a href="#h-1794244794">Sequence</a>
5046                </b>
5047             </td>
5048          </tr>
5049          <tr>
5050             <th>Content</th>
5051             <td>
5052                <ul>
5053                   <li>Base XSD Type: token</li>
5054                </ul>
5055                <ul>
5056                   <li>
5057                      <em>pattern</em> = [a-zA-Z\.\-\?\*_]+</li>
5058                </ul>
5059             </td>
5060          </tr>
5061       </table>
5062       <div class="sample box">
5063          <div>
5064             <input type="button" id="h-213750342_diagram_button" class="control"
5065                    onclick="switchState('h-213750342_diagram'); return false;"
5066                    style="display: none"/>
5067             <span class="caption">Diagram</span>
5068          </div>
5069          <div id="h-213750342_diagram" class="contents">
5070             <img usemap="#h-100858323" src="schemaDiagrams/h-100858323.png"/>
5071             <!--
5072             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-100858323.map--><map name="h-100858323">
5073 </map>
5074          </div>
5075          <script type="text/javascript">
5076 <!--
5077           setState('h-213750342_diagram', true);
5078 // -->
5079 </script>
5080       </div>
5081       <div class="schemaComponent box">
5082          <div>
5083             <input type="button" id="h-213750342_scbox_button" class="control"
5084                    onclick="switchState('h-213750342_scbox'); return false;"
5085                    style="display: none"/>
5086             <span class="caption">Schema Component Representation</span>
5087          </div>
5088          <div id="h-213750342_scbox" class="contents">
5089             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5090                <span class="scTag">name</span>="<span class="scContent">MolSeq</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5091                   <span class="scTag">base</span>="<span class="scContent">
5092                      <span class="type">
5093                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5094                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
5095                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z\.\-\?\*_]+</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5096          </div>
5097          <script type="text/javascript">
5098 <!--
5099           setState('h-213750342_scbox', false);
5100 // -->
5101 </script>
5102       </div>
5103       <div style="text-align: right; clear: both;">
5104          <a href="#top">top</a>
5105       </div>
5106       <hr/>
5107       <h3>Simple Type: <a name="h-54338178" class="name">PropertyDataType</a>
5108       </h3>
5109       <table class="hierarchy">
5110          <tr>
5111             <th>Super-types:</th>
5112             <td>
5113                <span class="type">
5114                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>PropertyDataType</strong> (by restriction)</td>
5115          </tr>
5116          <tr>
5117             <th>Sub-types:</th>
5118             <td>None</td>
5119          </tr>
5120       </table>
5121       <table class="properties">
5122          <tr>
5123             <th>Name</th>
5124             <td>PropertyDataType</td>
5125          </tr>
5126          <tr>
5127             <th>Used by (from the same schema document)</th>
5128             <td>Complex Type <b>
5129                   <a href="#h158033242">Property</a>
5130                </b>
5131             </td>
5132          </tr>
5133          <tr>
5134             <th>Content</th>
5135             <td>
5136                <ul>
5137                   <li>Base XSD Type: token</li>
5138                </ul>
5139                <ul>
5140                   <li>
5141                      <em>value</em> comes from list: {'xsd:string'|'xsd:boolean'|'xsd:decimal'|'xsd:float'|'xsd:double'|'xsd:duration'|'xsd:dateTime'|'xsd:time'|'xsd:date'|'xsd:gYearMonth'|'xsd:gYear'|'xsd:gMonthDay'|'xsd:gDay'|'xsd:gMonth'|'xsd:hexBinary'|'xsd:base64Binary'|'xsd:anyURI'|'xsd:normalizedString'|'xsd:token'|'xsd:integer'|'xsd:nonPositiveInteger'|'xsd:negativeInteger'|'xsd:long'|'xsd:int'|'xsd:short'|'xsd:byte'|'xsd:nonNegativeInteger'|'xsd:unsignedLong'|'xsd:unsignedInt'|'xsd:unsignedShort'|'xsd:unsignedByte'|'xsd:positiveInteger'}</li>
5142                </ul>
5143             </td>
5144          </tr>
5145       </table>
5146       <div class="sample box">
5147          <div>
5148             <input type="button" id="h-54338178_diagram_button" class="control"
5149                    onclick="switchState('h-54338178_diagram'); return false;"
5150                    style="display: none"/>
5151             <span class="caption">Diagram</span>
5152          </div>
5153          <div id="h-54338178_diagram" class="contents">
5154             <img usemap="#h-624240407" src="schemaDiagrams/h-624240407.png"/>
5155             <!--
5156             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-624240407.map--><map name="h-624240407">
5157 </map>
5158          </div>
5159          <script type="text/javascript">
5160 <!--
5161           setState('h-54338178_diagram', true);
5162 // -->
5163 </script>
5164       </div>
5165       <div class="schemaComponent box">
5166          <div>
5167             <input type="button" id="h-54338178_scbox_button" class="control"
5168                    onclick="switchState('h-54338178_scbox'); return false;"
5169                    style="display: none"/>
5170             <span class="caption">Schema Component Representation</span>
5171          </div>
5172          <div id="h-54338178_scbox" class="contents">
5173             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5174                <span class="scTag">name</span>="<span class="scContent">PropertyDataType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5175                   <span class="scTag">base</span>="<span class="scContent">
5176                      <span class="type">
5177                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5178                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5179                      <span class="scTag">value</span>="<span class="scContent">xsd:string</span>"/&gt;</div>
5180                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5181                      <span class="scTag">value</span>="<span class="scContent">xsd:boolean</span>"/&gt;</div>
5182                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5183                      <span class="scTag">value</span>="<span class="scContent">xsd:decimal</span>"/&gt;</div>
5184                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5185                      <span class="scTag">value</span>="<span class="scContent">xsd:float</span>"/&gt;</div>
5186                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5187                      <span class="scTag">value</span>="<span class="scContent">xsd:double</span>"/&gt;</div>
5188                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5189                      <span class="scTag">value</span>="<span class="scContent">xsd:duration</span>"/&gt;</div>
5190                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5191                      <span class="scTag">value</span>="<span class="scContent">xsd:dateTime</span>"/&gt;</div>
5192                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5193                      <span class="scTag">value</span>="<span class="scContent">xsd:time</span>"/&gt;</div>
5194                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5195                      <span class="scTag">value</span>="<span class="scContent">xsd:date</span>"/&gt;</div>
5196                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5197                      <span class="scTag">value</span>="<span class="scContent">xsd:gYearMonth</span>"/&gt;</div>
5198                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5199                      <span class="scTag">value</span>="<span class="scContent">xsd:gYear</span>"/&gt;</div>
5200                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5201                      <span class="scTag">value</span>="<span class="scContent">xsd:gMonthDay</span>"/&gt;</div>
5202                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5203                      <span class="scTag">value</span>="<span class="scContent">xsd:gDay</span>"/&gt;</div>
5204                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5205                      <span class="scTag">value</span>="<span class="scContent">xsd:gMonth</span>"/&gt;</div>
5206                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5207                      <span class="scTag">value</span>="<span class="scContent">xsd:hexBinary</span>"/&gt;</div>
5208                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5209                      <span class="scTag">value</span>="<span class="scContent">xsd:base64Binary</span>"/&gt;</div>
5210                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5211                      <span class="scTag">value</span>="<span class="scContent">xsd:anyURI</span>"/&gt;</div>
5212                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5213                      <span class="scTag">value</span>="<span class="scContent">xsd:normalizedString</span>"/&gt;</div>
5214                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5215                      <span class="scTag">value</span>="<span class="scContent">xsd:token</span>"/&gt;</div>
5216                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5217                      <span class="scTag">value</span>="<span class="scContent">xsd:integer</span>"/&gt;</div>
5218                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5219                      <span class="scTag">value</span>="<span class="scContent">xsd:nonPositiveInteger</span>"/&gt;</div>
5220                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5221                      <span class="scTag">value</span>="<span class="scContent">xsd:negativeInteger</span>"/&gt;</div>
5222                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5223                      <span class="scTag">value</span>="<span class="scContent">xsd:long</span>"/&gt;</div>
5224                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5225                      <span class="scTag">value</span>="<span class="scContent">xsd:int</span>"/&gt;</div>
5226                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5227                      <span class="scTag">value</span>="<span class="scContent">xsd:short</span>"/&gt;</div>
5228                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5229                      <span class="scTag">value</span>="<span class="scContent">xsd:byte</span>"/&gt;</div>
5230                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5231                      <span class="scTag">value</span>="<span class="scContent">xsd:nonNegativeInteger</span>"/&gt;</div>
5232                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5233                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedLong</span>"/&gt;</div>
5234                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5235                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedInt</span>"/&gt;</div>
5236                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5237                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedShort</span>"/&gt;</div>
5238                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5239                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedByte</span>"/&gt;</div>
5240                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5241                      <span class="scTag">value</span>="<span class="scContent">xsd:positiveInteger</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5242          </div>
5243          <script type="text/javascript">
5244 <!--
5245           setState('h-54338178_scbox', false);
5246 // -->
5247 </script>
5248       </div>
5249       <div style="text-align: right; clear: both;">
5250          <a href="#top">top</a>
5251       </div>
5252       <hr/>
5253       <h3>Simple Type: <a name="h518348337" class="name">Rank</a>
5254       </h3>
5255       <table class="hierarchy">
5256          <tr>
5257             <th>Super-types:</th>
5258             <td>
5259                <span class="type">
5260                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Rank</strong> (by restriction)</td>
5261          </tr>
5262          <tr>
5263             <th>Sub-types:</th>
5264             <td>None</td>
5265          </tr>
5266       </table>
5267       <table class="properties">
5268          <tr>
5269             <th>Name</th>
5270             <td>Rank</td>
5271          </tr>
5272          <tr>
5273             <th>Used by (from the same schema document)</th>
5274             <td>Complex Type <b>
5275                   <a href="#h888650454">Taxonomy</a>
5276                </b>
5277             </td>
5278          </tr>
5279          <tr>
5280             <th>Content</th>
5281             <td>
5282                <ul>
5283                   <li>Base XSD Type: token</li>
5284                </ul>
5285                <ul>
5286                   <li>
5287                      <em>value</em> comes from list: {'domain'|'kingdom'|'subkingdom'|'branch'|'infrakingdom'|'superphylum'|'phylum'|'subphylum'|'infraphylum'|'microphylum'|'superdivision'|'division'|'subdivision'|'infradivision'|'superclass'|'class'|'subclass'|'infraclass'|'superlegion'|'legion'|'sublegion'|'infralegion'|'supercohort'|'cohort'|'subcohort'|'infracohort'|'superorder'|'order'|'suborder'|'superfamily'|'family'|'subfamily'|'supertribe'|'tribe'|'subtribe'|'infratribe'|'genus'|'subgenus'|'superspecies'|'species'|'subspecies'|'variety'|'subvariety'|'form'|'subform'|'cultivar'|'unknown'|'other'}</li>
5288                </ul>
5289             </td>
5290          </tr>
5291       </table>
5292       <div class="sample box">
5293          <div>
5294             <input type="button" id="h518348337_diagram_button" class="control"
5295                    onclick="switchState('h518348337_diagram'); return false;"
5296                    style="display: none"/>
5297             <span class="caption">Diagram</span>
5298          </div>
5299          <div id="h518348337_diagram" class="contents">
5300             <img usemap="#h-1363552746" src="schemaDiagrams/h-1363552746.png"/>
5301             <!--
5302             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-1363552746.map--><map name="h-1363552746">
5303 </map>
5304          </div>
5305          <script type="text/javascript">
5306 <!--
5307           setState('h518348337_diagram', true);
5308 // -->
5309 </script>
5310       </div>
5311       <div class="schemaComponent box">
5312          <div>
5313             <input type="button" id="h518348337_scbox_button" class="control"
5314                    onclick="switchState('h518348337_scbox'); return false;"
5315                    style="display: none"/>
5316             <span class="caption">Schema Component Representation</span>
5317          </div>
5318          <div id="h518348337_scbox" class="contents">
5319             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5320                <span class="scTag">name</span>="<span class="scContent">Rank</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5321                   <span class="scTag">base</span>="<span class="scContent">
5322                      <span class="type">
5323                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5324                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5325                      <span class="scTag">value</span>="<span class="scContent">domain</span>"/&gt;</div>
5326                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5327                      <span class="scTag">value</span>="<span class="scContent">kingdom</span>"/&gt;</div>
5328                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5329                      <span class="scTag">value</span>="<span class="scContent">subkingdom</span>"/&gt;</div>
5330                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5331                      <span class="scTag">value</span>="<span class="scContent">branch</span>"/&gt;</div>
5332                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5333                      <span class="scTag">value</span>="<span class="scContent">infrakingdom</span>"/&gt;</div>
5334                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5335                      <span class="scTag">value</span>="<span class="scContent">superphylum</span>"/&gt;</div>
5336                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5337                      <span class="scTag">value</span>="<span class="scContent">phylum</span>"/&gt;</div>
5338                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5339                      <span class="scTag">value</span>="<span class="scContent">subphylum</span>"/&gt;</div>
5340                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5341                      <span class="scTag">value</span>="<span class="scContent">infraphylum</span>"/&gt;</div>
5342                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5343                      <span class="scTag">value</span>="<span class="scContent">microphylum</span>"/&gt;</div>
5344                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5345                      <span class="scTag">value</span>="<span class="scContent">superdivision</span>"/&gt;</div>
5346                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5347                      <span class="scTag">value</span>="<span class="scContent">division</span>"/&gt;</div>
5348                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5349                      <span class="scTag">value</span>="<span class="scContent">subdivision</span>"/&gt;</div>
5350                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5351                      <span class="scTag">value</span>="<span class="scContent">infradivision</span>"/&gt;</div>
5352                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5353                      <span class="scTag">value</span>="<span class="scContent">superclass</span>"/&gt;</div>
5354                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5355                      <span class="scTag">value</span>="<span class="scContent">class</span>"/&gt;</div>
5356                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5357                      <span class="scTag">value</span>="<span class="scContent">subclass</span>"/&gt;</div>
5358                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5359                      <span class="scTag">value</span>="<span class="scContent">infraclass</span>"/&gt;</div>
5360                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5361                      <span class="scTag">value</span>="<span class="scContent">superlegion</span>"/&gt;</div>
5362                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5363                      <span class="scTag">value</span>="<span class="scContent">legion</span>"/&gt;</div>
5364                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5365                      <span class="scTag">value</span>="<span class="scContent">sublegion</span>"/&gt;</div>
5366                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5367                      <span class="scTag">value</span>="<span class="scContent">infralegion</span>"/&gt;</div>
5368                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5369                      <span class="scTag">value</span>="<span class="scContent">supercohort</span>"/&gt;</div>
5370                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5371                      <span class="scTag">value</span>="<span class="scContent">cohort</span>"/&gt;</div>
5372                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5373                      <span class="scTag">value</span>="<span class="scContent">subcohort</span>"/&gt;</div>
5374                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5375                      <span class="scTag">value</span>="<span class="scContent">infracohort</span>"/&gt;</div>
5376                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5377                      <span class="scTag">value</span>="<span class="scContent">superorder</span>"/&gt;</div>
5378                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5379                      <span class="scTag">value</span>="<span class="scContent">order</span>"/&gt;</div>
5380                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5381                      <span class="scTag">value</span>="<span class="scContent">suborder</span>"/&gt;</div>
5382                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5383                      <span class="scTag">value</span>="<span class="scContent">superfamily</span>"/&gt;</div>
5384                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5385                      <span class="scTag">value</span>="<span class="scContent">family</span>"/&gt;</div>
5386                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5387                      <span class="scTag">value</span>="<span class="scContent">subfamily</span>"/&gt;</div>
5388                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5389                      <span class="scTag">value</span>="<span class="scContent">supertribe</span>"/&gt;</div>
5390                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5391                      <span class="scTag">value</span>="<span class="scContent">tribe</span>"/&gt;</div>
5392                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5393                      <span class="scTag">value</span>="<span class="scContent">subtribe</span>"/&gt;</div>
5394                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5395                      <span class="scTag">value</span>="<span class="scContent">infratribe</span>"/&gt;</div>
5396                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5397                      <span class="scTag">value</span>="<span class="scContent">genus</span>"/&gt;</div>
5398                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5399                      <span class="scTag">value</span>="<span class="scContent">subgenus</span>"/&gt;</div>
5400                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5401                      <span class="scTag">value</span>="<span class="scContent">superspecies</span>"/&gt;</div>
5402                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5403                      <span class="scTag">value</span>="<span class="scContent">species</span>"/&gt;</div>
5404                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5405                      <span class="scTag">value</span>="<span class="scContent">subspecies</span>"/&gt;</div>
5406                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5407                      <span class="scTag">value</span>="<span class="scContent">variety</span>"/&gt;</div>
5408                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5409                      <span class="scTag">value</span>="<span class="scContent">subvariety</span>"/&gt;</div>
5410                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5411                      <span class="scTag">value</span>="<span class="scContent">form</span>"/&gt;</div>
5412                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5413                      <span class="scTag">value</span>="<span class="scContent">subform</span>"/&gt;</div>
5414                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5415                      <span class="scTag">value</span>="<span class="scContent">cultivar</span>"/&gt;</div>
5416                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5417                      <span class="scTag">value</span>="<span class="scContent">unknown</span>"/&gt;</div>
5418                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5419                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5420          </div>
5421          <script type="text/javascript">
5422 <!--
5423           setState('h518348337_scbox', false);
5424 // -->
5425 </script>
5426       </div>
5427       <div style="text-align: right; clear: both;">
5428          <a href="#top">top</a>
5429       </div>
5430       <hr/>
5431       <h3>Simple Type: <a name="h519911868" class="name">SequenceRelationType</a>
5432       </h3>
5433       <table class="hierarchy">
5434          <tr>
5435             <th>Super-types:</th>
5436             <td>
5437                <span class="type">
5438                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceRelationType</strong> (by restriction)</td>
5439          </tr>
5440          <tr>
5441             <th>Sub-types:</th>
5442             <td>None</td>
5443          </tr>
5444       </table>
5445       <table class="properties">
5446          <tr>
5447             <th>Name</th>
5448             <td>SequenceRelationType</td>
5449          </tr>
5450          <tr>
5451             <th>Used by (from the same schema document)</th>
5452             <td>Complex Type <b>
5453                   <a href="#h-802965662">SequenceRelation</a>
5454                </b>
5455             </td>
5456          </tr>
5457          <tr>
5458             <th>Content</th>
5459             <td>
5460                <ul>
5461                   <li>Base XSD Type: token</li>
5462                </ul>
5463                <ul>
5464                   <li>
5465                      <em>value</em> comes from list: {'orthology'|'one_to_one_orthology'|'super_orthology'|'paralogy'|'ultra_paralogy'|'xenology'|'unknown'|'other'}</li>
5466                </ul>
5467             </td>
5468          </tr>
5469       </table>
5470       <div class="sample box">
5471          <div>
5472             <input type="button" id="h519911868_diagram_button" class="control"
5473                    onclick="switchState('h519911868_diagram'); return false;"
5474                    style="display: none"/>
5475             <span class="caption">Diagram</span>
5476          </div>
5477          <div id="h519911868_diagram" class="contents">
5478             <img usemap="#h-465227925" src="schemaDiagrams/h-465227925.png"/>
5479             <!--
5480             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-465227925.map--><map name="h-465227925">
5481 </map>
5482          </div>
5483          <script type="text/javascript">
5484 <!--
5485           setState('h519911868_diagram', true);
5486 // -->
5487 </script>
5488       </div>
5489       <div class="schemaComponent box">
5490          <div>
5491             <input type="button" id="h519911868_scbox_button" class="control"
5492                    onclick="switchState('h519911868_scbox'); return false;"
5493                    style="display: none"/>
5494             <span class="caption">Schema Component Representation</span>
5495          </div>
5496          <div id="h519911868_scbox" class="contents">
5497             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5498                <span class="scTag">name</span>="<span class="scContent">SequenceRelationType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5499                   <span class="scTag">base</span>="<span class="scContent">
5500                      <span class="type">
5501                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5502                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5503                      <span class="scTag">value</span>="<span class="scContent">orthology</span>"/&gt;</div>
5504                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5505                      <span class="scTag">value</span>="<span class="scContent">one_to_one_orthology</span>"/&gt;</div>
5506                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5507                      <span class="scTag">value</span>="<span class="scContent">super_orthology</span>"/&gt;</div>
5508                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5509                      <span class="scTag">value</span>="<span class="scContent">paralogy</span>"/&gt;</div>
5510                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5511                      <span class="scTag">value</span>="<span class="scContent">ultra_paralogy</span>"/&gt;</div>
5512                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5513                      <span class="scTag">value</span>="<span class="scContent">xenology</span>"/&gt;</div>
5514                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5515                      <span class="scTag">value</span>="<span class="scContent">unknown</span>"/&gt;</div>
5516                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5517                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5518          </div>
5519          <script type="text/javascript">
5520 <!--
5521           setState('h519911868_scbox', false);
5522 // -->
5523 </script>
5524       </div>
5525       <div style="text-align: right; clear: both;">
5526          <a href="#top">top</a>
5527       </div>
5528       <hr/>
5529       <h3>Simple Type: <a name="h935679102" class="name">SequenceSymbol</a>
5530       </h3>
5531       <table class="hierarchy">
5532          <tr>
5533             <th>Super-types:</th>
5534             <td>
5535                <span class="type">
5536                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceSymbol</strong> (by restriction)</td>
5537          </tr>
5538          <tr>
5539             <th>Sub-types:</th>
5540             <td>None</td>
5541          </tr>
5542       </table>
5543       <table class="properties">
5544          <tr>
5545             <th>Name</th>
5546             <td>SequenceSymbol</td>
5547          </tr>
5548          <tr>
5549             <th>Used by (from the same schema document)</th>
5550             <td>Complex Type <b>
5551                   <a href="#h-1794244794">Sequence</a>
5552                </b>
5553             </td>
5554          </tr>
5555          <tr>
5556             <th>Content</th>
5557             <td>
5558                <ul>
5559                   <li>Base XSD Type: token</li>
5560                </ul>
5561                <ul>
5562                   <li>
5563                      <em>pattern</em> = \S{1,10}</li>
5564                </ul>
5565             </td>
5566          </tr>
5567       </table>
5568       <div class="sample box">
5569          <div>
5570             <input type="button" id="h935679102_diagram_button" class="control"
5571                    onclick="switchState('h935679102_diagram'); return false;"
5572                    style="display: none"/>
5573             <span class="caption">Diagram</span>
5574          </div>
5575          <div id="h935679102_diagram" class="contents">
5576             <img usemap="#h516473321" src="schemaDiagrams/h516473321.png"/>
5577             <!--
5578             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h516473321.map--><map name="h516473321">
5579 </map>
5580          </div>
5581          <script type="text/javascript">
5582 <!--
5583           setState('h935679102_diagram', true);
5584 // -->
5585 </script>
5586       </div>
5587       <div class="schemaComponent box">
5588          <div>
5589             <input type="button" id="h935679102_scbox_button" class="control"
5590                    onclick="switchState('h935679102_scbox'); return false;"
5591                    style="display: none"/>
5592             <span class="caption">Schema Component Representation</span>
5593          </div>
5594          <div id="h935679102_scbox" class="contents">
5595             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5596                <span class="scTag">name</span>="<span class="scContent">SequenceSymbol</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5597                   <span class="scTag">base</span>="<span class="scContent">
5598                      <span class="type">
5599                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5600                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
5601                      <span class="scTag">value</span>="<span class="scContent">\S{1,10}</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5602          </div>
5603          <script type="text/javascript">
5604 <!--
5605           setState('h935679102_scbox', false);
5606 // -->
5607 </script>
5608       </div>
5609       <div style="text-align: right; clear: both;">
5610          <a href="#top">top</a>
5611       </div>
5612       <hr/>
5613       <h3>Simple Type: <a name="h1408823200" class="name">SequenceType</a>
5614       </h3>
5615       <table class="hierarchy">
5616          <tr>
5617             <th>Super-types:</th>
5618             <td>
5619                <span class="type">
5620                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceType</strong> (by restriction)</td>
5621          </tr>
5622          <tr>
5623             <th>Sub-types:</th>
5624             <td>None</td>
5625          </tr>
5626       </table>
5627       <table class="properties">
5628          <tr>
5629             <th>Name</th>
5630             <td>SequenceType</td>
5631          </tr>
5632          <tr>
5633             <th>Used by (from the same schema document)</th>
5634             <td>Complex Type <b>
5635                   <a href="#h-1794244794">Sequence</a>
5636                </b>
5637             </td>
5638          </tr>
5639          <tr>
5640             <th>Content</th>
5641             <td>
5642                <ul>
5643                   <li>Base XSD Type: token</li>
5644                </ul>
5645                <ul>
5646                   <li>
5647                      <em>value</em> comes from list: {'rna'|'dna'|'aa'}</li>
5648                </ul>
5649             </td>
5650          </tr>
5651       </table>
5652       <div class="sample box">
5653          <div>
5654             <input type="button" id="h1408823200_diagram_button" class="control"
5655                    onclick="switchState('h1408823200_diagram'); return false;"
5656                    style="display: none"/>
5657             <span class="caption">Diagram</span>
5658          </div>
5659          <div id="h1408823200_diagram" class="contents">
5660             <img usemap="#h-2043228153" src="schemaDiagrams/h-2043228153.png"/>
5661             <!--
5662             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-2043228153.map--><map name="h-2043228153">
5663 </map>
5664          </div>
5665          <script type="text/javascript">
5666 <!--
5667           setState('h1408823200_diagram', true);
5668 // -->
5669 </script>
5670       </div>
5671       <div class="schemaComponent box">
5672          <div>
5673             <input type="button" id="h1408823200_scbox_button" class="control"
5674                    onclick="switchState('h1408823200_scbox'); return false;"
5675                    style="display: none"/>
5676             <span class="caption">Schema Component Representation</span>
5677          </div>
5678          <div id="h1408823200_scbox" class="contents">
5679             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5680                <span class="scTag">name</span>="<span class="scContent">SequenceType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5681                   <span class="scTag">base</span>="<span class="scContent">
5682                      <span class="type">
5683                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5684                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5685                      <span class="scTag">value</span>="<span class="scContent">rna</span>"/&gt;</div>
5686                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5687                      <span class="scTag">value</span>="<span class="scContent">dna</span>"/&gt;</div>
5688                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5689                      <span class="scTag">value</span>="<span class="scContent">aa</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5690          </div>
5691          <script type="text/javascript">
5692 <!--
5693           setState('h1408823200_scbox', false);
5694 // -->
5695 </script>
5696       </div>
5697       <div style="text-align: right; clear: both;">
5698          <a href="#top">top</a>
5699       </div>
5700       <hr/>
5701       <h3>Simple Type: <a name="h712147427" class="name">TaxonomyCode</a>
5702       </h3>
5703       <table class="hierarchy">
5704          <tr>
5705             <th>Super-types:</th>
5706             <td>
5707                <span class="type">
5708                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>TaxonomyCode</strong> (by restriction)</td>
5709          </tr>
5710          <tr>
5711             <th>Sub-types:</th>
5712             <td>None</td>
5713          </tr>
5714       </table>
5715       <table class="properties">
5716          <tr>
5717             <th>Name</th>
5718             <td>TaxonomyCode</td>
5719          </tr>
5720          <tr>
5721             <th>Used by (from the same schema document)</th>
5722             <td>Complex Type <b>
5723                   <a href="#h888650454">Taxonomy</a>
5724                </b>
5725             </td>
5726          </tr>
5727          <tr>
5728             <th>Content</th>
5729             <td>
5730                <ul>
5731                   <li>Base XSD Type: token</li>
5732                </ul>
5733                <ul>
5734                   <li>
5735                      <em>pattern</em> = [a-zA-Z0-9_]{2,10}</li>
5736                </ul>
5737             </td>
5738          </tr>
5739       </table>
5740       <div class="sample box">
5741          <div>
5742             <input type="button" id="h712147427_diagram_button" class="control"
5743                    onclick="switchState('h712147427_diagram'); return false;"
5744                    style="display: none"/>
5745             <span class="caption">Diagram</span>
5746          </div>
5747          <div id="h712147427_diagram" class="contents">
5748             <img usemap="#h516707748" src="schemaDiagrams/h516707748.png"/>
5749             <!--
5750             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h516707748.map--><map name="h516707748">
5751 </map>
5752          </div>
5753          <script type="text/javascript">
5754 <!--
5755           setState('h712147427_diagram', true);
5756 // -->
5757 </script>
5758       </div>
5759       <div class="schemaComponent box">
5760          <div>
5761             <input type="button" id="h712147427_scbox_button" class="control"
5762                    onclick="switchState('h712147427_scbox'); return false;"
5763                    style="display: none"/>
5764             <span class="caption">Schema Component Representation</span>
5765          </div>
5766          <div id="h712147427_scbox" class="contents">
5767             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5768                <span class="scTag">name</span>="<span class="scContent">TaxonomyCode</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5769                   <span class="scTag">base</span>="<span class="scContent">
5770                      <span class="type">
5771                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5772                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
5773                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]{2,10}</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5774          </div>
5775          <script type="text/javascript">
5776 <!--
5777           setState('h712147427_scbox', false);
5778 // -->
5779 </script>
5780       </div>
5781       <div style="text-align: right; clear: both;">
5782          <a href="#top">top</a>
5783       </div>
5784       <hr/>
5785       <h3>Simple Type: <a name="h577349652" class="name">id_ref</a>
5786       </h3>
5787       <table class="hierarchy">
5788          <tr>
5789             <th>Super-types:</th>
5790             <td>
5791                <span class="type">
5792                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span> &lt; <strong>id_ref</strong> (by restriction)</td>
5793          </tr>
5794          <tr>
5795             <th>Sub-types:</th>
5796             <td>None</td>
5797          </tr>
5798       </table>
5799       <table class="properties">
5800          <tr>
5801             <th>Name</th>
5802             <td>id_ref</td>
5803          </tr>
5804          <tr>
5805             <th>Used by (from the same schema document)</th>
5806             <td>Complex Type <b>
5807                   <a href="#h-1794244794">Sequence</a>
5808                </b>, Complex Type <b>
5809                   <a href="#h158033242">Property</a>
5810                </b>, Complex Type <b>
5811                   <a href="#h-802965662">SequenceRelation</a>
5812                </b>, Complex Type <b>
5813                   <a href="#h-802965662">SequenceRelation</a>
5814                </b>, Complex Type <b>
5815                   <a href="#h192331856">CladeRelation</a>
5816                </b>, Complex Type <b>
5817                   <a href="#h192331856">CladeRelation</a>
5818                </b>
5819             </td>
5820          </tr>
5821          <tr>
5822             <th>Content</th>
5823             <td>
5824                <ul>
5825                   <li>Base XSD Type: IDREF</li>
5826                </ul>
5827             </td>
5828          </tr>
5829       </table>
5830       <div class="sample box">
5831          <div>
5832             <input type="button" id="h577349652_diagram_button" class="control"
5833                    onclick="switchState('h577349652_diagram'); return false;"
5834                    style="display: none"/>
5835             <span class="caption">Diagram</span>
5836          </div>
5837          <div id="h577349652_diagram" class="contents">
5838             <img usemap="#h813803539" src="schemaDiagrams/h813803539.png"/>
5839             <!--
5840             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h813803539.map--><map name="h813803539">
5841 </map>
5842          </div>
5843          <script type="text/javascript">
5844 <!--
5845           setState('h577349652_diagram', true);
5846 // -->
5847 </script>
5848       </div>
5849       <div class="schemaComponent box">
5850          <div>
5851             <input type="button" id="h577349652_scbox_button" class="control"
5852                    onclick="switchState('h577349652_scbox'); return false;"
5853                    style="display: none"/>
5854             <span class="caption">Schema Component Representation</span>
5855          </div>
5856          <div id="h577349652_scbox" class="contents">
5857             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5858                <span class="scTag">name</span>="<span class="scContent">id_ref</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5859                   <span class="scTag">base</span>="<span class="scContent">
5860                      <span class="type">
5861                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span>
5862                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5863          </div>
5864          <script type="text/javascript">
5865 <!--
5866           setState('h577349652_scbox', false);
5867 // -->
5868 </script>
5869       </div>
5870       <div style="text-align: right; clear: both;">
5871          <a href="#top">top</a>
5872       </div>
5873       <hr/>
5874       <h3>Simple Type: <a name="h-1482113798" class="name">id_source</a>
5875       </h3>
5876       <table class="hierarchy">
5877          <tr>
5878             <th>Super-types:</th>
5879             <td>
5880                <span class="type">
5881                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span> &lt; <strong>id_source</strong> (by restriction)</td>
5882          </tr>
5883          <tr>
5884             <th>Sub-types:</th>
5885             <td>None</td>
5886          </tr>
5887       </table>
5888       <table class="properties">
5889          <tr>
5890             <th>Name</th>
5891             <td>id_source</td>
5892          </tr>
5893          <tr>
5894             <th>Used by (from the same schema document)</th>
5895             <td>Complex Type <b>
5896                   <a href="#h-1124608460">Clade</a>
5897                </b>, Complex Type <b>
5898                   <a href="#h888650454">Taxonomy</a>
5899                </b>, Complex Type <b>
5900                   <a href="#h-1794244794">Sequence</a>
5901                </b>
5902             </td>
5903          </tr>
5904          <tr>
5905             <th>Content</th>
5906             <td>
5907                <ul>
5908                   <li>Base XSD Type: ID</li>
5909                </ul>
5910             </td>
5911          </tr>
5912       </table>
5913       <div class="sample box">
5914          <div>
5915             <input type="button" id="h-1482113798_diagram_button" class="control"
5916                    onclick="switchState('h-1482113798_diagram'); return false;"
5917                    style="display: none"/>
5918             <span class="caption">Diagram</span>
5919          </div>
5920          <div id="h-1482113798_diagram" class="contents">
5921             <img usemap="#h123518701" src="schemaDiagrams/h123518701.png"/>
5922             <!--
5923             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h123518701.map--><map name="h123518701">
5924 </map>
5925          </div>
5926          <script type="text/javascript">
5927 <!--
5928           setState('h-1482113798_diagram', true);
5929 // -->
5930 </script>
5931       </div>
5932       <div class="schemaComponent box">
5933          <div>
5934             <input type="button" id="h-1482113798_scbox_button" class="control"
5935                    onclick="switchState('h-1482113798_scbox'); return false;"
5936                    style="display: none"/>
5937             <span class="caption">Schema Component Representation</span>
5938          </div>
5939          <div id="h-1482113798_scbox" class="contents">
5940             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5941                <span class="scTag">name</span>="<span class="scContent">id_source</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5942                   <span class="scTag">base</span>="<span class="scContent">
5943                      <span class="type">
5944                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span>
5945                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5946          </div>
5947          <script type="text/javascript">
5948 <!--
5949           setState('h-1482113798_scbox', false);
5950 // -->
5951 </script>
5952       </div>
5953       <div style="text-align: right; clear: both;">
5954          <a href="#top">top</a>
5955       </div>
5956       <hr/>
5957       <h3>Simple Type: <a name="h-675984882" class="name">ref</a>
5958       </h3>
5959       <table class="hierarchy">
5960          <tr>
5961             <th>Super-types:</th>
5962             <td>
5963                <span class="type">
5964                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>ref</strong> (by restriction)</td>
5965          </tr>
5966          <tr>
5967             <th>Sub-types:</th>
5968             <td>None</td>
5969          </tr>
5970       </table>
5971       <table class="properties">
5972          <tr>
5973             <th>Name</th>
5974             <td>ref</td>
5975          </tr>
5976          <tr>
5977             <th>Used by (from the same schema document)</th>
5978             <td>Complex Type <b>
5979                   <a href="#h917087604">Annotation</a>
5980                </b>, Complex Type <b>
5981                   <a href="#h158033242">Property</a>
5982                </b>, Complex Type <b>
5983                   <a href="#h158033242">Property</a>
5984                </b>
5985             </td>
5986          </tr>
5987          <tr>
5988             <th>Content</th>
5989             <td>
5990                <ul>
5991                   <li>Base XSD Type: token</li>
5992                </ul>
5993                <ul>
5994                   <li>
5995                      <em>pattern</em> = [a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+</li>
5996                </ul>
5997             </td>
5998          </tr>
5999       </table>
6000       <div class="sample box">
6001          <div>
6002             <input type="button" id="h-675984882_diagram_button" class="control"
6003                    onclick="switchState('h-675984882_diagram'); return false;"
6004                    style="display: none"/>
6005             <span class="caption">Diagram</span>
6006          </div>
6007          <div id="h-675984882_diagram" class="contents">
6008             <img usemap="#h-1056119207" src="schemaDiagrams/h-1056119207.png"/>
6009             <!--
6010             Map ref: file:/D:/WORK/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.00//schemaDiagrams/h-1056119207.map--><map name="h-1056119207">
6011 </map>
6012          </div>
6013          <script type="text/javascript">
6014 <!--
6015           setState('h-675984882_diagram', true);
6016 // -->
6017 </script>
6018       </div>
6019       <div class="schemaComponent box">
6020          <div>
6021             <input type="button" id="h-675984882_scbox_button" class="control"
6022                    onclick="switchState('h-675984882_scbox'); return false;"
6023                    style="display: none"/>
6024             <span class="caption">Schema Component Representation</span>
6025          </div>
6026          <div id="h-675984882_scbox" class="contents">
6027             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
6028                <span class="scTag">name</span>="<span class="scContent">ref</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
6029                   <span class="scTag">base</span>="<span class="scContent">
6030                      <span class="type">
6031                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
6032                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
6033                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
6034          </div>
6035          <script type="text/javascript">
6036 <!--
6037           setState('h-675984882_scbox', false);
6038 // -->
6039 </script>
6040       </div>
6041       <div style="text-align: right; clear: both;">
6042          <a href="#top">top</a>
6043       </div>
6044       <hr/>
6045       <div id="legend">
6046          <h2>
6047             <a name="Legend">Legend</a>
6048          </h2>
6049          <div style="float: left; width: 15em;">
6050             <h3 style="margin-bottom: 0px;">Complex Type:</h3>
6051             <div class="hint" style="margin-left: 0em;">Schema Component Type</div>
6052          </div>
6053          <div style="float: left; width: 15em;">
6054             <h3 style="margin-bottom: 0px;">
6055                <span class="name">AusAddress</span>
6056             </h3>
6057             <div class="hint" style="margin-left: 0em;">Schema Component Name</div>
6058          </div>
6059          <table class="hierarchy" style="clear : both">
6060             <tr>
6061                <th>Super-types:</th>
6062                <td>
6063                   <span class="type" style="color: #0000FF; text-decoration:underline;">Address</span> &lt; <span class="current">AusAddress</span> (by extension)</td>
6064             </tr>
6065             <tr>
6066                <th>Sub-types:</th>
6067                <td>
6068                   <ul>
6069                      <li>
6070                         <span class="type" style="color: #0000FF; text-decoration:underline;">QLDAddress</span> (by restriction)</li>
6071                   </ul>
6072                </td>
6073             </tr>
6074          </table>
6075          <div class="hint">If this schema component is a type definition, its type hierarchy is shown in a gray-bordered box.</div>
6076          <table class="properties">
6077             <tr>
6078                <th>Name</th>
6079                <td>AusAddress</td>
6080             </tr>
6081             <tr>
6082                <th>
6083                   <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
6084                </th>
6085                <td>no</td>
6086             </tr>
6087          </table>
6088          <div class="hint">The table above displays the properties of this schema component.</div>
6089          <div class="sample box">
6090             <div>
6091                <span class="caption">XML Instance Representation</span>
6092             </div>
6093             <div class="contents">
6094                <span style="margin-left: 0em">&lt;...</span>
6095                <span class="newFields">
6096                   <span> country="<span class="fixed">Australia</span>"</span>
6097                </span>&gt; <br/>
6098                <span style="margin-left: 1.5em" class="inherited">&lt;unitNo&gt; <span class="type">string</span> &lt;/unitNo&gt; <span class="occurs">[0..1]</span>
6099                </span>
6100                <br/>
6101                <span style="margin-left: 1.5em" class="inherited">&lt;houseNo&gt; <span class="type">string</span> &lt;/houseNo&gt; <span class="occurs">[1]</span>
6102                </span>
6103                <br/>
6104                <span style="margin-left: 1.5em" class="inherited">&lt;street&gt; <span class="type">string</span> &lt;/street&gt; <span class="occurs">[1]</span>
6105                </span>
6106                <br/>
6107                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Choice' in glossary" href="#term_Choice">Choice</a>
6108                   <span class="occurs">[1]</span>
6109                </span>
6110                <br/>
6111                <span style="margin-left: 3em" class="inherited">&lt;city&gt; <span class="type">string</span> &lt;/city&gt; <span class="occurs">[1]</span>
6112                </span>
6113                <br/>
6114                <span style="margin-left: 3em" class="inherited">&lt;town&gt; <span class="type">string</span> &lt;/town&gt; <span class="occurs">[1]</span>
6115                </span>
6116                <br/>
6117                <span class="group" style="margin-left: 1.5em">End Choice</span>
6118                <br/>
6119                <span class="newFields">
6120                   <span style="margin-left: 1.5em">&lt;state&gt; <span class="type" style="text-decoration:underline;">AusStates</span> &lt;/state&gt; <span class="occurs">[1]</span>
6121                   </span>
6122                   <br/>
6123                   <span style="margin-left: 1.5em">&lt;postcode&gt; <span class="constraint">string &lt;&lt;<em>pattern</em> = [1-9][0-9]{3}&gt;&gt;</span> &lt;/postcode&gt; <span class="occurs">[1]</span>
6124                      <a href="javascript:void(0)" title="View Documentation" class="documentation"
6125                         onclick="docArray = new Array('Post code must be a four-digit number.'); viewDocumentation('Element', 'postcode', docArray);">?</a>
6126                   </span>
6127                   <br/>
6128                </span>
6129                <span style="margin-left: 0em">&lt;/...&gt;</span>
6130                <br/>
6131             </div>
6132          </div>
6133          <div class="hint">
6134             <p>The XML Instance Representation table above shows the schema component's content as an XML instance.</p>
6135             <ul>
6136                <li>The minimum and maximum occurrence of elements and attributes are provided in square brackets, e.g. [0..1].</li>
6137                <li>Model group information are shown in gray, e.g. Start Choice ... End Choice.</li>
6138                <li>For type derivations, the elements and attributes that have been added to or changed from the base type's content are shown in <span style="font-weight: bold">bold</span>.</li>
6139                <li>If an element/attribute has a fixed value, the fixed value is shown in green, e.g. country="Australia".</li>
6140                <li>Otherwise, the type of the element/attribute is displayed.
6141                <ul>
6142                      <li>If the element/attribute's type is in the schema, a link is provided to it.</li>
6143                      <li>For local simple type definitions, the constraints are displayed in angle brackets, e.g. &lt;&lt;<em>pattern</em> = [1-9][0-9]{3}&gt;&gt;.</li>
6144                   </ul>
6145                </li>
6146                <li>If a local element/attribute has documentation, it will be displayed in a window that pops up when the question mark inside the attribute or next to the element is clicked, e.g. &lt;postcode&gt;.</li>
6147             </ul>
6148          </div>
6149          <div class="schemaComponent box">
6150             <div>
6151                <span class="caption">Schema Component Representation</span>
6152             </div>
6153             <div class="contents">
6154                <span style="margin-left: 0em">&lt;<span class="scTag">complexType</span>
6155                   <span class="scTag">name</span>="<span class="scContent">AusAddress</span>"&gt;</span>
6156                <br/>
6157                <span style="margin-left: 1.5em">&lt;<span class="scTag">complexContent</span>&gt;</span>
6158                <br/>
6159                <span style="margin-left: 3em">&lt;<span class="scTag">extension</span>
6160                   <span class="scTag">base</span>="<span class="scContent">
6161                      <span class="type" style="text-decoration:underline;">Address</span>
6162                   </span>"&gt;</span>
6163                <br/>
6164                <span style="margin-left: 4.5em">&lt;<span class="scTag">sequence</span>&gt;</span>
6165                <br/>
6166                <span style="margin-left: 6em">&lt;<span class="scTag">element</span>
6167                   <span class="scTag">name</span>="<span class="scContent">state</span>" <span class="scTag">type</span>="<span class="scContent">
6168                      <span class="type" style="text-decoration:underline;">AusStates</span>
6169                   </span>"/&gt;</span>
6170                <br/>
6171                <span style="margin-left: 6em">&lt;<span class="scTag">element</span>
6172                   <span class="scTag">name</span>="<span class="scContent">postcode</span>"&gt;</span>
6173                <br/>
6174                <span style="margin-left: 7.5em">&lt;<span class="scTag">simpleType</span>&gt;</span>
6175                <br/>
6176                <span style="margin-left: 9em">&lt;<span class="scTag">restriction</span>
6177                   <span class="scTag">base</span>="<span class="scContent">
6178                      <span class="type">string</span>
6179                   </span>"&gt;</span>
6180                <br/>
6181                <span style="margin-left: 10.5em">&lt;<span class="scTag">pattern</span>
6182                   <span class="scTag">value</span>="<span class="scContent">[1-9][0-9]{3}</span>"/&gt;</span>
6183                <br/>
6184                <span style="margin-left: 9em">&lt;/<span class="scTag">restriction</span>&gt;</span>
6185                <br/>
6186                <span style="margin-left: 7.5em">&lt;/<span class="scTag">simpleType</span>&gt;</span>
6187                <br/>
6188                <span style="margin-left: 6em">&lt;/<span class="scTag">element</span>&gt;</span>
6189                <br/>
6190                <span style="margin-left: 4.5em">&lt;/<span class="scTag">sequence</span>&gt;</span>
6191                <br/>
6192                <span style="margin-left: 4.5em">&lt;<span class="scTag">attribute</span>
6193                   <span class="scTag">name</span>="<span class="scContent">country</span>" <span class="scTag">type</span>="<span class="scContent">
6194                      <span class="type">string</span>
6195                   </span>" <span class="scTag">fixed</span>="<span class="scContent">Australia</span>"/&gt;</span>
6196                <br/>
6197                <span style="margin-left: 3em">&lt;/<span class="scTag">extension</span>&gt;</span>
6198                <br/>
6199                <span style="margin-left: 1.5em">&lt;/<span class="scTag">complexContent</span>&gt;</span>
6200                <br/>
6201                <span style="margin-left: 0em">&lt;/<span class="scTag">complexType</span>&gt;</span>
6202                <br/>
6203             </div>
6204          </div>
6205          <div class="hint">The Schema Component Representation table above displays the underlying XML representation of the schema component. (Annotations are not shown.)</div>
6206          <div style="text-align: right; clear: both;">
6207             <a href="#top">top</a>
6208          </div>
6209          <hr/>
6210       </div>
6211       <div id="glossary">
6212          <h2>
6213             <a name="Glossary">Glossary</a>
6214          </h2>
6215          <p>
6216             <span class="glossaryTerm">
6217                <a name="term_Abstract">Abstract</a>
6218             </span>(Applies to complex type definitions and element declarations). An abstract element or complex type cannot used to validate an element instance. If there is a reference to an abstract element, only element declarations that can substitute the abstract element can be used to validate the instance. For references to abstract type definitions, only derived types can be used.</p>
6219          <p>
6220             <span class="glossaryTerm">
6221                <a name="term_All">All Model Group</a>
6222             </span>Child elements can be provided <em>in any order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-all"
6223                href="http://www.w3.org/TR/xmlschema-1/#element-all">http://www.w3.org/TR/xmlschema-1/#element-all</a>.</p>
6224          <p>
6225             <span class="glossaryTerm">
6226                <a name="term_Choice">Choice Model Group</a>
6227             </span>
6228             <em>Only one</em> from the list of child elements and model groups can be provided in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-choice"
6229                href="http://www.w3.org/TR/xmlschema-1/#element-choice">http://www.w3.org/TR/xmlschema-1/#element-choice</a>.</p>
6230          <p>
6231             <span class="glossaryTerm">
6232                <a name="term_CollapseWS">Collapse Whitespace Policy</a>
6233             </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32). Then, collapse contiguous sequences of space characters into single space character, and remove leading and trailing space characters.</p>
6234          <p>
6235             <span class="glossaryTerm">
6236                <a name="term_ElemBlock">Disallowed Substitutions</a>
6237             </span>(Applies to element declarations). If <em>substitution</em> is specified, then <a title="Look up 'substitution group' in glossary"
6238                href="phyloxml.xsd.html#term_SubGroup">substitution group</a> members cannot be used in place of the given element declaration to validate element instances. If <em>derivation methods</em>, e.g. extension, restriction, are specified, then the given element declaration will not validate element instances that have types derived from the element declaration's type using the specified derivation methods. Normally, element instances can override their declaration's type by specifying an <code>xsi:type</code> attribute.</p>
6239          <p>
6240             <span class="glossaryTerm">
6241                <a name="term_Key">Key Constraint</a>
6242             </span>Like <a title="Look up 'Uniqueness Constraint' in glossary"
6243                href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>, but additionally requires that the specified value(s) must be provided. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6244                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6245          <p>
6246             <span class="glossaryTerm">
6247                <a name="term_KeyRef">Key Reference Constraint</a>
6248             </span>Ensures that the specified value(s) must match value(s) from a <a title="Look up 'Key Constraint' in glossary" href="phyloxml.xsd.html#term_Key">Key Constraint</a> or <a title="Look up 'Uniqueness Constraint' in glossary"
6249                href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6250                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6251          <p>
6252             <span class="glossaryTerm">
6253                <a name="term_ModelGroup">Model Group</a>
6254             </span>Groups together element content, specifying the order in which the element content can occur and the number of times the group of element content may be repeated. See: <a title="http://www.w3.org/TR/xmlschema-1/#Model_Groups"
6255                href="http://www.w3.org/TR/xmlschema-1/#Model_Groups">http://www.w3.org/TR/xmlschema-1/#Model_Groups</a>.</p>
6256          <p>
6257             <span class="glossaryTerm">
6258                <a name="term_Nillable">Nillable</a>
6259             </span>(Applies to element declarations). If an element declaration is nillable, instances can use the <code>xsi:nil</code> attribute. The <code>xsi:nil</code> attribute is the boolean attribute, <em>nil</em>, from the <em>http://www.w3.org/2001/XMLSchema-instance</em> namespace. If an element instance has an <code>xsi:nil</code> attribute set to true, it can be left empty, even though its element declaration may have required content.</p>
6260          <p>
6261             <span class="glossaryTerm">
6262                <a name="term_Notation">Notation</a>
6263             </span>A notation is used to identify the format of a piece of data. Values of elements and attributes that are of type, NOTATION, must come from the names of declared notations. See: <a title="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations"
6264                href="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations">http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations</a>.</p>
6265          <p>
6266             <span class="glossaryTerm">
6267                <a name="term_PreserveWS">Preserve Whitespace Policy</a>
6268             </span>Preserve whitespaces exactly as they appear in instances.</p>
6269          <p>
6270             <span class="glossaryTerm">
6271                <a name="term_TypeFinal">Prohibited Derivations</a>
6272             </span>(Applies to type definitions). Derivation methods that cannot be used to create sub-types from a given type definition.</p>
6273          <p>
6274             <span class="glossaryTerm">
6275                <a name="term_TypeBlock">Prohibited Substitutions</a>
6276             </span>(Applies to complex type definitions). Prevents sub-types that have been derived using the specified derivation methods from validating element instances in place of the given type definition.</p>
6277          <p>
6278             <span class="glossaryTerm">
6279                <a name="term_ReplaceWS">Replace Whitespace Policy</a>
6280             </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32).</p>
6281          <p>
6282             <span class="glossaryTerm">
6283                <a name="term_Sequence">Sequence Model Group</a>
6284             </span>Child elements and model groups must be provided <em>in the specified order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-sequence"
6285                href="http://www.w3.org/TR/xmlschema-1/#element-sequence">http://www.w3.org/TR/xmlschema-1/#element-sequence</a>.</p>
6286          <p>
6287             <span class="glossaryTerm">
6288                <a name="term_SubGroup">Substitution Group</a>
6289             </span>Elements that are <em>members</em> of a substitution group can be used wherever the <em>head</em> element of the substitution group is referenced.</p>
6290          <p>
6291             <span class="glossaryTerm">
6292                <a name="term_ElemFinal">Substitution Group Exclusions</a>
6293             </span>(Applies to element declarations). Prohibits element declarations from nominating themselves as being able to substitute a given element declaration, if they have types that are derived from the original element's type using the specified derivation methods.</p>
6294          <p>
6295             <span class="glossaryTerm">
6296                <a name="term_TargetNS">Target Namespace</a>
6297             </span>The target namespace identifies the namespace that components in this schema belongs to. If no target namespace is provided, then the schema components do not belong to any namespace.</p>
6298          <p>
6299             <span class="glossaryTerm">
6300                <a name="term_Unique">Uniqueness Constraint</a>
6301             </span>Ensures uniqueness of an element/attribute value, or a combination of values, within a specified scope. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6302                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6303          <div style="text-align: right; clear: both;">
6304             <a href="#top">top</a>
6305          </div>
6306          <hr/>
6307       </div>
6308       <p class="footer">Generated by <a href="http://www.oxygenxml.com">&lt;oXygen/&gt; XML Editor</a> using a modified version of <a href="http://titanium.dstc.edu.au/xml/xs3p">xs3p</a> that adds schema diagrams and chunking support. Last modified: <script type="text/javascript">
6309 <!--
6310           document.write(document.lastModified);
6311 // -->
6312 </script>
6313       </p>
6314    </body>
6315 </html>