3 PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
4 <html xmlns="http://www.w3.org/1999/xhtml">
6 <title>phyloXML 1.10 - phyloxml.xsd</title>
7 <meta http-equiv="Content-Type" content="text/xml; charset=UTF-8"/>
8 <style type="text/css">
9 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
10 /* More-configurable styles */
12 /******** General ********/
17 background-color: White;
18 font-family: Arial, sans-serif;
22 /* Horizontal rules */
30 border-bottom: 1px #ccc solid;
34 /* Main section headers */
39 /* Sub-section headers */
45 /* Table displaying the properties of the schema components or the
46 schema document itself */
47 table.properties th, table.properties th a {
49 background-color: #F99; /* Pink */
52 background-color: #eee; /* Gray */
59 /********* Documentation style *************/
63 background-color: #EEEEFF;
64 border: 1px solid #DDDDFF;
71 /******** Table of Contents Section ********/
73 /* Controls for switching between printing and viewing modes */
75 color: #963; /* Orange-brown */
77 /* Controls that can collapse or expand all XML Instance
78 Representation and Schema Component Representation boxes */
80 border: 2px solid #999;
84 /******** Schema Document Properties Section ********/
86 /* Table displaying the namespaces declared in the schema */
88 background-color: #ccc;
91 background-color: #eee;
93 /* Target namespace of the schema */
100 /******** Schema Components' Sections ********/
102 /* Name of schema component */
104 color: #F93; /* Orange */
107 /* Hierarchy table */
109 border: 2px solid #999; /* Gray */
112 /* XML Instance Representation table */
113 div.sample div.contents {
114 border: 1px dashed black;
118 /* Schema Component Representation table */
119 div.schemaComponent div.contents {
120 border: 2px black solid;
124 /******** Glossary Section ********/
128 color: #036; /* Blue */
132 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
133 /* Printer-version styles */
137 /* Ensures that controls are hidden when printing */
138 div#printerControls {
159 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
162 /******** General ********/
164 /* Unordered lists */
188 /* Table displaying the properties of the schema components or the
189 schema document itself */
193 table.properties th {
196 /* Boxes that can make its content appear and disappear*/
201 div.box span.caption {
204 /* Button to open and close the box */
205 div.box input.control {
209 vertical-align: middle;
213 div.box div.contents {
218 /******** Table of Contents Section ********/
220 /* Controls for switching between printing and viewing modes */
221 div#printerControls {
227 /* Controls that can collapse or expand all XML Instance
228 Representation and Schema Component Representation boxes */
235 /******** Schema Document Properties Section ********/
237 /* Table displaying the namespaces declared in the schema */
238 table.namespaces th {
240 table.namespaces td {
242 /* Target namespace of the schema */
247 /******** Schema Components' Sections ********/
249 /* Name of schema component */
253 /* Hierarchy table */
262 table.hierarchy th, table.hierarchy td {
266 /* XML Instance Representation table */
270 div.sample div.contents {
272 font-family: Courier New, sans-serif;
275 /* Normal elements and attributes */
276 div.sample div.contents, div.sample div.contents a {
280 div.sample div.contents .group, div.sample div.contents .group a {
281 color: #999; /* Light gray */
283 /* Type Information */
284 div.sample div.contents .type, div.sample div.contents .type a {
285 color: #999; /* Light gray */
287 /* Occurrence Information */
288 div.sample div.contents .occurs, div.sample div.contents .occurs a {
289 color: #999; /* Light gray */
292 div.sample div.contents .fixed {
293 color: #063; /* Green */
296 /* Simple type constraints */
297 div.sample div.contents .constraint, div.sample div.contents .constraint a {
298 color: #999; /* Light gray */
300 /* Elements and attributes inherited from base type */
301 div.sample div.contents .inherited, div.sample div.contents .inherited a {
302 color: #666; /* Dark gray */
304 /* Elements and attributes added to or changed from base type */
305 div.sample div.contents .newFields {
308 /* Other type of information */
309 div.sample div.contents .other, div.sample div.contents .other a {
310 color: #369; /* Blue */
313 /* Link to open up window displaying documentation */
314 div.sample div.contents a.documentation {
315 text-decoration: none;
322 background-color: #FFD;
325 /* Invert colors when hovering over link to open up window
326 displaying documentation */
327 div.sample div.contents a.documentation:hover {
329 background-color: #069;
332 /* Schema Component Representation table */
333 div.schemaComponent {
336 div.schemaComponent div.contents {
337 font-family: Courier New, sans-serif;
341 /* Syntax characters */
342 div.schemaComponent div.contents {
343 color: #00f; /* blue */
345 /* Element and attribute tags */
346 div.schemaComponent div.contents .scTag {
347 color: #933; /* maroon */
349 /* Element and attribute content */
350 div.schemaComponent div.contents .scContent, div.schemaComponent div.contents .scContent a {
355 div.schemaComponent div.contents .comment {
356 color: #999; /* Light gray */
359 /******** Legend Section ********/
361 div#legend table, div#legend div {
364 div#legend div.hint {
365 color: #999; /* Light gray */
372 /******** Glossary Section ********/
379 /********* Details *************/
381 color: #666; /* Light gray */
385 color: #666; /* Light gray */
386 text-decoration:none;
389 /******** Footer ********/
395 <script type="text/javascript">
397 /* IDs of XML Instance Representation boxes */
398 var xiBoxes = new Array('h270234806_xibox', 'h155831896_xibox', 'h535307528_xibox', 'h-1124608460_xibox', 'h888650454_xibox', 'h712147427_xibox', 'h518348337_xibox', 'h-1794244794_xibox', 'h935679102_xibox', 'h-213750342_xibox', 'h1408823200_xibox', 'h-788356801_xibox', 'h259010940_xibox', 'h-1389097534_xibox', 'h-436501026_xibox', 'h1358103055_xibox', 'h-1514309680_xibox', 'h1535743041_xibox', 'h401516646_xibox', 'h917087604_xibox', 'h158033242_xibox', 'h-675984882_xibox', 'h-763252414_xibox', 'h-54338178_xibox', 'h-676012345_xibox', 'h-993584945_xibox', 'h-853091232_xibox', 'h-979596407_xibox', 'h-1112505301_xibox', 'h332351765_xibox', 'h517931443_xibox', 'h-1691165380_xibox', 'h-802965662_xibox', 'h519911868_xibox', 'h192331856_xibox', 'h-1482113798_xibox', 'h577349652_xibox');
399 /* IDs of diagram boxes */
400 var diagramBoxes = new Array('h270234806_diagram', 'h155831896_diagram', 'h535307528_diagram', 'h-1124608460_diagram', 'h888650454_diagram', 'h712147427_diagram', 'h518348337_diagram', 'h-1794244794_diagram', 'h935679102_diagram', 'h-213750342_diagram', 'h1408823200_diagram', 'h-788356801_diagram', 'h259010940_diagram', 'h-1389097534_diagram', 'h-436501026_diagram', 'h1358103055_diagram', 'h-1514309680_diagram', 'h1535743041_diagram', 'h401516646_diagram', 'h917087604_diagram', 'h158033242_diagram', 'h-675984882_diagram', 'h-763252414_diagram', 'h-54338178_diagram', 'h-676012345_diagram', 'h-993584945_diagram', 'h-853091232_diagram', 'h-979596407_diagram', 'h-1112505301_diagram', 'h332351765_diagram', 'h517931443_diagram', 'h-1691165380_diagram', 'h-802965662_diagram', 'h519911868_diagram', 'h192331856_diagram', 'h-1482113798_diagram', 'h577349652_diagram');
401 /* IDs of logical diagram boxes */
402 var logicalDiagramBoxes = new Array('h270234806_logicalDiagram');
403 /* IDs of Schema Component Representation boxes */
404 var scBoxes = new Array('schema_scbox', 'h270234806_scbox', 'h155831896_scbox', 'h535307528_scbox', 'h-1124608460_scbox', 'h888650454_scbox', 'h712147427_scbox', 'h518348337_scbox', 'h-1794244794_scbox', 'h935679102_scbox', 'h-213750342_scbox', 'h1408823200_scbox', 'h-788356801_scbox', 'h259010940_scbox', 'h-1389097534_scbox', 'h-436501026_scbox', 'h1358103055_scbox', 'h-1514309680_scbox', 'h1535743041_scbox', 'h401516646_scbox', 'h917087604_scbox', 'h158033242_scbox', 'h-675984882_scbox', 'h-763252414_scbox', 'h-54338178_scbox', 'h-676012345_scbox', 'h-993584945_scbox', 'h-853091232_scbox', 'h-979596407_scbox', 'h-1112505301_scbox', 'h332351765_scbox', 'h517931443_scbox', 'h-1691165380_scbox', 'h-802965662_scbox', 'h519911868_scbox', 'h192331856_scbox', 'h-1482113798_scbox', 'h577349652_scbox');
407 * Can get the ID of the button controlling
408 * a collapseable box by concatenating
409 * this string onto the ID of the box itself.
411 var B_SFIX = "_button";
415 * Returns an element in the current HTML document.
417 * @param elementID Identifier of HTML element
418 * @return HTML element object
420 function getElementObject(elementID) {
422 if (document.getElementById) {
423 elemObj = document.getElementById(elementID);
429 * Closes a collapseable box.
431 * @param boxObj Collapseable box
432 * @param buttonObj Button controlling box
434 function closeBox(boxObj, buttonObj) {
435 if (boxObj == null || buttonObj == null) {
436 // Box or button not found
438 // Change 'display' CSS property of box
439 boxObj.style.display="none";
441 // Change text of button
442 if (boxObj.style.display=="none") {
443 buttonObj.value=" + ";
449 * Opens a collapseable box.
451 * @param boxObj Collapseable box
452 * @param buttonObj Button controlling box
454 function openBox(boxObj, buttonObj) {
455 if (boxObj == null || buttonObj == null) {
456 // Box or button not found
458 // Change 'display' CSS property of box
459 boxObj.style.display="block";
461 // Change text of button
462 if (boxObj.style.display=="block") {
463 buttonObj.value=" - ";
469 * Sets the state of a collapseable box.
471 * @param boxID Identifier of box
472 * @param open If true, box is "opened",
473 * Otherwise, box is "closed".
475 function setState(boxID, open) {
476 var boxObj = getElementObject(boxID);
477 var buttonObj = getElementObject(boxID+B_SFIX);
478 if (boxObj == null || buttonObj == null) {
479 // Box or button not found
481 openBox(boxObj, buttonObj);
482 // Make button visible
483 buttonObj.style.display="inline";
485 closeBox(boxObj, buttonObj);
486 // Make button visible
487 buttonObj.style.display="inline";
492 * Switches the state of a collapseable box, e.g.
493 * if it's opened, it'll be closed, and vice versa.
495 * @param boxID Identifier of box
497 function switchState(boxID) {
498 var boxObj = getElementObject(boxID);
499 var buttonObj = getElementObject(boxID+B_SFIX);
500 if (boxObj == null || buttonObj == null) {
501 // Box or button not found
502 } else if (boxObj.style.display=="none") {
503 // Box is closed, so open it
504 openBox(boxObj, buttonObj);
505 } else if (boxObj.style.display=="block") {
506 // Box is opened, so close it
507 closeBox(boxObj, buttonObj);
512 * Closes all boxes in a given list.
514 * @param boxList Array of box IDs
516 function collapseAll(boxList) {
518 for (idx = 0; idx < boxList.length; idx++) {
519 var boxObj = getElementObject(boxList[idx]);
520 var buttonObj = getElementObject(boxList[idx]+B_SFIX);
521 closeBox(boxObj, buttonObj);
526 * Open all boxes in a given list.
528 * @param boxList Array of box IDs
530 function expandAll(boxList) {
532 for (idx = 0; idx < boxList.length; idx++) {
533 var boxObj = getElementObject(boxList[idx]);
534 var buttonObj = getElementObject(boxList[idx]+B_SFIX);
535 openBox(boxObj, buttonObj);
540 * Makes all the control buttons of boxes appear.
542 * @param boxList Array of box IDs
544 function viewControlButtons(boxList) {
546 for (idx = 0; idx < boxList.length; idx++) {
547 buttonObj = getElementObject(boxList[idx]+B_SFIX);
548 if (buttonObj != null) {
549 buttonObj.style.display = "inline";
555 * Makes all the control buttons of boxes disappear.
557 * @param boxList Array of box IDs
559 function hideControlButtons(boxList) {
561 for (idx = 0; idx < boxList.length; idx++) {
562 buttonObj = getElementObject(boxList[idx]+B_SFIX);
563 if (buttonObj != null) {
564 buttonObj.style.display = "none";
570 * Sets the page for either printing mode
571 * or viewing mode. In printing mode, the page
572 * is made to be more readable when printing it out.
573 * In viewing mode, the page is more browsable.
575 * @param isPrinterVersion If true, display in
576 * printing mode; otherwise,
579 function displayMode(isPrinterVersion) {
581 if (isPrinterVersion) {
582 // Hide global control buttons
583 obj = getElementObject("globalControls");
585 obj.style.visibility = "hidden";
588 obj = getElementObject("legend");
590 obj.style.display = "none";
592 obj = getElementObject("legendTOC");
594 obj.style.display = "none";
597 obj = getElementObject("glossary");
599 obj.style.display = "none";
601 obj = getElementObject("glossaryTOC");
603 obj.style.display = "none";
606 // Expand all diagrams
607 expandAll(diagramBoxes);
608 // Expand all logical diagrams
609 expandAll(logicalDiagramBoxes);
610 // Expand all XML Instance Representation tables
612 // Expand all Schema Component Representation tables
615 // Hide Control buttons
616 hideControlButtons(diagramBoxes);
617 hideControlButtons(logicalDiagramBoxes);
618 hideControlButtons(xiBoxes);
619 hideControlButtons(scBoxes);
621 // View global control buttons
622 obj = getElementObject("globalControls");
624 obj.style.visibility = "visible";
627 obj = getElementObject("legend");
629 obj.style.display = "block";
631 obj = getElementObject("legendTOC");
633 obj.style.display = "block";
636 obj = getElementObject("glossary");
638 obj.style.display = "block";
640 obj = getElementObject("glossaryTOC");
642 obj.style.display = "block";
645 // Expand all diagram boxes
646 expandAll(diagramBoxes);
647 // Collapse all logical diagram boxes.
648 collapseAll(logicalDiagramBoxes);
649 // Expand all XML Instance Representation tables
651 // Collapse all Schema Component Representation tables
652 collapseAll(scBoxes);
654 // View Control buttons
655 viewControlButtons(diagramBoxes);
656 viewControlButtons(logicalDiagramBoxes);
657 viewControlButtons(xiBoxes);
658 viewControlButtons(scBoxes);
666 <script type="text/javascript">
671 * Counter of documentation windows
672 * Used to give each window a unique name
677 * Opens up a window displaying the documentation
678 * of a schema component in the XML Instance
679 * Representation table.
681 * @param compDesc Description of schema component
682 * @param compName Name of schema component
683 * @param docTextArray Array containing the paragraphs
684 * of the new document
686 function viewDocumentation(compDesc, compName, docTextArray) {
692 /* Generate content */
693 var actualText = "<html>";
694 actualText += "<head><title>";
695 actualText += compDesc;
696 if (compName != '') {
697 actualText += ": " + compName;
699 actualText += "</title></head>";
700 actualText += "<body bgcolor=\"#FFFFEE\">";
702 actualText += "<p style=\"font-family: Arial, sans-serif; font-size: 12pt; font-weight: bold; letter-spacing:1px;\">";
703 actualText += compDesc;
704 if (compName != '') {
705 actualText += ": <span style=\"color:#006699\">" + compName + "</span>";
707 actualText += "</p>";
710 for (idx = 0; idx < docTextArray.length; idx++) {
711 actualText += "<p style=\"font-family: Arial, sans-serif; font-size: 10pt;\">" + docTextArray[idx] + "</p>";
713 // Link to close window
714 actualText += "<a href=\"javascript:void(0)\" onclick=\"window.close();\" style=\"font-family: Arial, sans-serif; font-size: 8pt;\">Close</a>";
715 actualText += "</body></html>";
719 var docWindow = window.open("", "documentation"+windowCount, "toolbar=no,location=no,status=no,menubar=no,scrollbars=yes,resizable,alwaysRaised,dependent,titlebar=no,width="+width+",height="+height+",screenX="+locX+",left="+locX+",screenY="+locY+",top="+locY);
720 docWindow.document.write(actualText);
728 <a name="top">phyloXML 1.10</a>
730 <div style="float: right;">
731 <div id="printerControls" style="display:none;">
732 <input type="checkbox" onclick="displayMode(this.checked)"/>Printer-friendly Version</div>
733 <script type="text/javascript">
736 var pc = getElementObject("printerControls");
738 pc.style.display="block";
743 <div id="globalControls" style="display:none">
744 <strong>Logical Diagram:</strong>
746 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(logicalDiagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(logicalDiagramBoxes)">Collapse All</a> ]</span>
749 <strong>XML Instance Representation:</strong>
751 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(xiBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(xiBoxes)">Collapse All</a> ]</span>
754 <strong>Diagram:</strong>
756 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(diagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(diagramBoxes)">Collapse All</a> ]</span>
759 <strong>Schema Component Representation:</strong>
761 <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(scBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(scBoxes)">Collapse All</a> ]</span>
763 <script type="text/javascript">
766 var gc = getElementObject("globalControls");
768 gc.style.display="block";
774 <h2>Table of Contents</h2>
777 <a href="#SchemaProperties">Schema Document Properties</a>
780 <a href="#SchemaDeclarations">Global Declarations</a>
783 <a href="#h270234806">Element: <strong>phyloxml</strong>
789 <a href="#SchemaDefinitions">Global Definitions</a>
792 <a href="#h-788356801">Complex Type: <strong>Accession</strong>
796 <a href="#h917087604">Complex Type: <strong>Annotation</strong>
800 <a href="#h1535743041">Complex Type: <strong>BinaryCharacterList</strong>
804 <a href="#h-1514309680">Complex Type: <strong>BinaryCharacters</strong>
808 <a href="#h-1691165380">Complex Type: <strong>BranchColor</strong>
812 <a href="#h-1124608460">Complex Type: <strong>Clade</strong>
816 <a href="#h192331856">Complex Type: <strong>CladeRelation</strong>
820 <a href="#h-993584945">Complex Type: <strong>Confidence</strong>
824 <a href="#h517931443">Complex Type: <strong>Date</strong>
828 <a href="#h-979596407">Complex Type: <strong>Distribution</strong>
832 <a href="#h259010940">Complex Type: <strong>DomainArchitecture</strong>
836 <a href="#h-436501026">Complex Type: <strong>Events</strong>
840 <a href="#h-853091232">Complex Type: <strong>Id</strong>
844 <a href="#h-213750342">Complex Type: <strong>MolSeq</strong>
848 <a href="#h535307528">Complex Type: <strong>Phylogeny</strong>
852 <a href="#h155831896">Complex Type: <strong>Phyloxml</strong>
856 <a href="#h-1112505301">Complex Type: <strong>Point</strong>
860 <a href="#h332351765">Complex Type: <strong>Polygon</strong>
864 <a href="#h158033242">Complex Type: <strong>Property</strong>
868 <a href="#h-1389097534">Complex Type: <strong>ProteinDomain</strong>
872 <a href="#h401516646">Complex Type: <strong>Reference</strong>
876 <a href="#h-1794244794">Complex Type: <strong>Sequence</strong>
880 <a href="#h-802965662">Complex Type: <strong>SequenceRelation</strong>
884 <a href="#h888650454">Complex Type: <strong>Taxonomy</strong>
888 <a href="#h-676012345">Complex Type: <strong>Uri</strong>
892 <a href="#h-763252414">Simple Type: <strong>AppliesTo</strong>
896 <a href="#h1358103055">Simple Type: <strong>EventType</strong>
900 <a href="#h-54338178">Simple Type: <strong>PropertyDataType</strong>
904 <a href="#h518348337">Simple Type: <strong>Rank</strong>
908 <a href="#h519911868">Simple Type: <strong>SequenceRelationType</strong>
912 <a href="#h935679102">Simple Type: <strong>SequenceSymbol</strong>
916 <a href="#h1408823200">Simple Type: <strong>SequenceType</strong>
920 <a href="#h712147427">Simple Type: <strong>TaxonomyCode</strong>
924 <a href="#h577349652">Simple Type: <strong>id_ref</strong>
928 <a href="#h-1482113798">Simple Type: <strong>id_source</strong>
932 <a href="#h-675984882">Simple Type: <strong>ref</strong>
938 <ul id="legendTOC" style="margin-top: 0em">
940 <a href="#Legend">Legend</a>
943 <ul id="glossaryTOC" style="margin-top: 0em">
945 <a href="#Glossary">Glossary</a>
948 <div style="text-align: right; clear: both;">
949 <a href="#top">top</a>
953 <a name="SchemaProperties">Schema Document Properties</a>
955 <table class="properties">
958 <a title="Look up 'Target Namespace' in glossary"
959 href="phyloxml.xsd.html#term_TargetNS">Target Namespace</a>
962 <span class="targetNS">http://www.phyloxml.org</span>
966 <th>Element and Attribute Namespaces</th>
969 <li>Global element and attribute declarations belong to this schema's target namespace.</li>
970 <li>By default, local element declarations belong to this schema's target namespace.</li>
971 <li>By default, local attribute declarations have no namespace.</li>
976 <th>Documentation</th>
977 <td class="documentation"> phyloXML is an XML language to describe evolutionary trees and associated data. Version: 1.10.
978 License: dual-licensed under the LGPL or Ruby's License. Copyright (c) 2008-2011 Christian M Zmasek.</td>
981 <h3>Declared Namespaces</h3>
982 <table class="namespaces">
989 <a name="ns_xml">xml</a>
991 <td>http://www.w3.org/XML/1998/namespace</td>
995 <a name="ns_phy">phy</a>
998 <span class="targetNS">http://www.phyloxml.org</span>
1003 <a name="ns_xs">xs</a>
1005 <td>http://www.w3.org/2001/XMLSchema</td>
1008 <div class="schemaComponent box">
1010 <input type="button" id="schema_scbox_button" class="control"
1011 onclick="switchState('schema_scbox'); return false;"
1012 style="display: none"/>
1013 <span class="caption">Schema Component Representation</span>
1015 <div id="schema_scbox" class="contents">
1016 <div style="margin-left: 0em"><<span class="scTag">xs:schema</span>
1017 <span class="scTag">targetNamespace</span>="<span class="scContent">http://www.phyloxml.org</span>" <span class="scTag">elementFormDefault</span>="<span class="scContent">qualified</span>" <span class="scTag">attributeFormDefault</span>="<span class="scContent">unqualified</span>"><div class="scContent" style="margin-left: 1.5em">...</div></<span class="scTag">xs:schema</span>></div>
1019 <script type="text/javascript">
1021 setState('schema_scbox', false);
1025 <div style="text-align: right; clear: both;">
1026 <a href="#top">top</a>
1030 <a name="SchemaDeclarations">Global Declarations</a>
1032 <h3>Element: <a name="h270234806" class="name">phyloxml</a>
1034 <table class="properties">
1043 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phyloxml" type definition." href="#h155831896">Phyloxml</a>
1049 <a title="Look up 'Nillable' in glossary" href="phyloxml.xsd.html#term_Nillable">Nillable</a>
1055 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1060 <div class="sample box">
1062 <input type="button" id="h270234806_logicalDiagram_button" class="control"
1063 onclick="switchState('h270234806_logicalDiagram'); return false;"
1064 style="display: none"/>
1065 <span class="caption">Logical Diagram</span>
1067 <div id="h270234806_logicalDiagram" class="contents">
1068 <img usemap="#h1900732667" src="schemaDiagrams/h1900732667.png"/>
1070 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1900732667.map--><map name="h1900732667">
1073 <script type="text/javascript">
1075 setState('h270234806_logicalDiagram', false);
1079 <div class="sample box">
1081 <input type="button" id="h270234806_xibox_button" class="control"
1082 onclick="switchState('h270234806_xibox'); return false;"
1083 style="display: none"/>
1084 <span class="caption">XML Instance Representation</span>
1086 <div id="h270234806_xibox" class="contents">
1087 <div style="margin-left: 0em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml> <br/>
1088 <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
1089 <span class="occurs">[1..*]</span>
1092 <div style="margin-left: 3em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="type">
1093 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phylogeny" type definition." href="#h535307528">Phylogeny</a>
1094 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="occurs">[0..*]</span>
1096 <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1098 <span class="group" style="margin-left: 1.5em">End Sequence</span>
1099 <br/></<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml></div>
1101 <script type="text/javascript">
1103 setState('h270234806_xibox', true);
1107 <div class="sample box">
1109 <input type="button" id="h270234806_diagram_button" class="control"
1110 onclick="switchState('h270234806_diagram'); return false;"
1111 style="display: none"/>
1112 <span class="caption">Diagram</span>
1114 <div id="h270234806_diagram" class="contents">
1115 <img usemap="#h482833585" src="schemaDiagrams/h482833585.png"/>
1117 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h482833585.map--><map name="h482833585">
1118 <area shape="rect" alt="h535307528" coords="344,10,463,50"
1119 href="phyloxml.xsd.html#h535307528"/>
1123 <script type="text/javascript">
1125 setState('h270234806_diagram', true);
1129 <div class="schemaComponent box">
1131 <input type="button" id="h270234806_scbox_button" class="control"
1132 onclick="switchState('h270234806_scbox'); return false;"
1133 style="display: none"/>
1134 <span class="caption">Schema Component Representation</span>
1136 <div id="h270234806_scbox" class="contents">
1137 <div style="margin-left: 0em"><<span class="scTag">xs:element</span>
1138 <span class="scTag">name</span>="<span class="scContent">phyloxml</span>" <span class="scTag">type</span>="<span class="scContent">
1140 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phyloxml" type definition." href="#h155831896">Phyloxml</a>
1144 <script type="text/javascript">
1146 setState('h270234806_scbox', false);
1150 <div style="text-align: right; clear: both;">
1151 <a href="#top">top</a>
1155 <a name="SchemaDefinitions">Global Definitions</a>
1157 <h3>Complex Type: <a name="h-788356801" class="name">Accession</a>
1159 <table class="hierarchy">
1161 <th>Super-types:</th>
1164 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>Accession</strong> (by extension)</td>
1171 <table class="properties">
1177 <th>Used by (from the same schema document)</th>
1178 <td>Complex Type <b>
1179 <a href="#h-1794244794">Sequence</a>
1185 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1190 <th>Documentation</th>
1191 <td class="documentation"> Element Accession is used to capture the local part in a sequence identifier (e.g. 'P17304'
1192 in 'UniProtKB:P17304', in which case the 'source' attribute would be 'UniProtKB'). </td>
1195 <div class="sample box">
1197 <input type="button" id="h-788356801_xibox_button" class="control"
1198 onclick="switchState('h-788356801_xibox'); return false;"
1199 style="display: none"/>
1200 <span class="caption">XML Instance Representation</span>
1202 <div id="h-788356801_xibox" class="contents">
1203 <div style="margin-left: 0em"><...<br/>
1204 <span style="margin-left: 0.5em" class="newFields"> source="<span class="type">
1205 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1206 <span class="occurs">[1]</span>"</span>> <br/>
1207 <span style="margin-left: 1.5em">
1209 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1211 <br/></...></div>
1213 <script type="text/javascript">
1215 setState('h-788356801_xibox', true);
1219 <div class="sample box">
1221 <input type="button" id="h-788356801_diagram_button" class="control"
1222 onclick="switchState('h-788356801_diagram'); return false;"
1223 style="display: none"/>
1224 <span class="caption">Diagram</span>
1226 <div id="h-788356801_diagram" class="contents">
1227 <img usemap="#h-1142642744" src="schemaDiagrams/h-1142642744.png"/>
1229 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1142642744.map--><map name="h-1142642744">
1232 <script type="text/javascript">
1234 setState('h-788356801_diagram', true);
1238 <div class="schemaComponent box">
1240 <input type="button" id="h-788356801_scbox_button" class="control"
1241 onclick="switchState('h-788356801_scbox'); return false;"
1242 style="display: none"/>
1243 <span class="caption">Schema Component Representation</span>
1245 <div id="h-788356801_scbox" class="contents">
1246 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1247 <span class="scTag">name</span>="<span class="scContent">Accession</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
1248 <span class="scTag">base</span>="<span class="scContent">
1250 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1251 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1252 <span class="scTag">name</span>="<span class="scContent">source</span>" <span class="scTag">type</span>="<span class="scContent">
1254 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1255 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
1257 <script type="text/javascript">
1259 setState('h-788356801_scbox', false);
1263 <div style="text-align: right; clear: both;">
1264 <a href="#top">top</a>
1267 <h3>Complex Type: <a name="h917087604" class="name">Annotation</a>
1269 <table class="hierarchy">
1271 <th>Super-types:</th>
1279 <table class="properties">
1285 <th>Used by (from the same schema document)</th>
1286 <td>Complex Type <b>
1287 <a href="#h-1794244794">Sequence</a>
1293 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1298 <th>Documentation</th>
1299 <td class="documentation"> The annotation of a molecular sequence. It is recommended to annotate by using the optional
1300 'ref' attribute (some examples of acceptable values for the ref attribute: 'GO:0008270',
1301 'KEGG:Tetrachloroethene degradation', 'EC:1.1.1.1'). Optional element 'desc' allows for a free text
1302 description. Optional element 'confidence' is used to state the type and value of support for a annotation.
1303 Similarly, optional attribute 'evidence' is used to describe the evidence for a annotation as free text
1304 (e.g. 'experimental'). Optional element 'property' allows for further, typed and referenced annotations from
1305 external resources.</td>
1308 <div class="sample box">
1310 <input type="button" id="h917087604_xibox_button" class="control"
1311 onclick="switchState('h917087604_xibox'); return false;"
1312 style="display: none"/>
1313 <span class="caption">XML Instance Representation</span>
1315 <div id="h917087604_xibox" class="contents">
1316 <div style="margin-left: 0em"><...<br/>
1317 <span style="margin-left: 0.5em"> ref="<span class="type">
1318 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ref" type definition." href="#h-675984882">ref</a>
1320 <span class="occurs">[0..1]</span>"</span>
1322 <span style="margin-left: 0.5em"> source="<span class="type">
1323 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1324 <span class="occurs">[0..1]</span>"</span>
1326 <span style="margin-left: 0.5em"> evidence="<span class="type">
1327 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1328 <span class="occurs">[0..1]</span>"</span>
1330 <span style="margin-left: 0.5em"> type="<span class="type">
1331 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1332 <span class="occurs">[0..1]</span>"</span>> <br/>
1333 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="type">
1334 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="occurs">[0..1]</span>
1336 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
1337 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1338 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
1340 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property> <span class="type">
1341 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Property" type definition." href="#h158033242">Property</a>
1342 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property> <span class="occurs">[0..*]</span>
1344 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="type">
1345 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
1346 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="occurs">[0..1]</span>
1347 </div></...></div>
1349 <script type="text/javascript">
1351 setState('h917087604_xibox', true);
1355 <div class="sample box">
1357 <input type="button" id="h917087604_diagram_button" class="control"
1358 onclick="switchState('h917087604_diagram'); return false;"
1359 style="display: none"/>
1360 <span class="caption">Diagram</span>
1362 <div id="h917087604_diagram" class="contents">
1363 <img usemap="#h624412339" src="schemaDiagrams/h624412339.png"/>
1365 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h624412339.map--><map name="h624412339">
1366 <area shape="rect" alt="h-993584945" coords="236,50,362,90"
1367 href="phyloxml.xsd.html#h-993584945"/>
1369 <area shape="rect" alt="h158033242" coords="236,100,348,140"
1370 href="phyloxml.xsd.html#h158033242"/>
1372 <area shape="rect" alt="h-676012345" coords="236,150,313,190"
1373 href="phyloxml.xsd.html#h-676012345"/>
1375 <area shape="rect" alt="h-675984882" coords="150,200,245,226"
1376 href="phyloxml.xsd.html#h-675984882"/>
1380 <script type="text/javascript">
1382 setState('h917087604_diagram', true);
1386 <div class="schemaComponent box">
1388 <input type="button" id="h917087604_scbox_button" class="control"
1389 onclick="switchState('h917087604_scbox'); return false;"
1390 style="display: none"/>
1391 <span class="caption">Schema Component Representation</span>
1393 <div id="h917087604_scbox" class="contents">
1394 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1395 <span class="scTag">name</span>="<span class="scContent">Annotation</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1396 <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
1398 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1399 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1400 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1401 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1403 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1405 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1406 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1407 <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
1409 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Property" type definition." href="#h158033242">Property</a>
1411 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
1412 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1413 <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
1415 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
1417 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
1418 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1419 <span class="scTag">name</span>="<span class="scContent">ref</span>" <span class="scTag">type</span>="<span class="scContent">
1421 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ref" type definition." href="#h-675984882">ref</a>
1424 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1425 <span class="scTag">name</span>="<span class="scContent">source</span>" <span class="scTag">type</span>="<span class="scContent">
1427 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1429 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1430 <span class="scTag">name</span>="<span class="scContent">evidence</span>" <span class="scTag">type</span>="<span class="scContent">
1432 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1434 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1435 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1437 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1438 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
1440 <script type="text/javascript">
1442 setState('h917087604_scbox', false);
1446 <div style="text-align: right; clear: both;">
1447 <a href="#top">top</a>
1450 <h3>Complex Type: <a name="h1535743041" class="name">BinaryCharacterList</a>
1452 <table class="hierarchy">
1454 <th>Super-types:</th>
1462 <table class="properties">
1465 <td>BinaryCharacterList</td>
1468 <th>Used by (from the same schema document)</th>
1469 <td>Complex Type <b>
1470 <a href="#h-1514309680">BinaryCharacters</a>
1471 </b>, Complex Type <b>
1472 <a href="#h-1514309680">BinaryCharacters</a>
1473 </b>, Complex Type <b>
1474 <a href="#h-1514309680">BinaryCharacters</a>
1475 </b>, Complex Type <b>
1476 <a href="#h-1514309680">BinaryCharacters</a>
1482 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1487 <div class="sample box">
1489 <input type="button" id="h1535743041_xibox_button" class="control"
1490 onclick="switchState('h1535743041_xibox'); return false;"
1491 style="display: none"/>
1492 <span class="caption">XML Instance Representation</span>
1494 <div id="h1535743041_xibox" class="contents">
1495 <div style="margin-left: 0em"><...> <br/>
1496 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc> <span class="type">
1497 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc> <span class="occurs">[1..*]</span>
1498 </div></...></div>
1500 <script type="text/javascript">
1502 setState('h1535743041_xibox', true);
1506 <div class="sample box">
1508 <input type="button" id="h1535743041_diagram_button" class="control"
1509 onclick="switchState('h1535743041_diagram'); return false;"
1510 style="display: none"/>
1511 <span class="caption">Diagram</span>
1513 <div id="h1535743041_diagram" class="contents">
1514 <img usemap="#h508496390" src="schemaDiagrams/h508496390.png"/>
1516 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h508496390.map--><map name="h508496390">
1519 <script type="text/javascript">
1521 setState('h1535743041_diagram', true);
1525 <div class="schemaComponent box">
1527 <input type="button" id="h1535743041_scbox_button" class="control"
1528 onclick="switchState('h1535743041_scbox'); return false;"
1529 style="display: none"/>
1530 <span class="caption">Schema Component Representation</span>
1532 <div id="h1535743041_scbox" class="contents">
1533 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1534 <span class="scTag">name</span>="<span class="scContent">BinaryCharacterList</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1535 <span class="scTag">name</span>="<span class="scContent">bc</span>" <span class="scTag">type</span>="<span class="scContent">
1537 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1538 </span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
1540 <script type="text/javascript">
1542 setState('h1535743041_scbox', false);
1546 <div style="text-align: right; clear: both;">
1547 <a href="#top">top</a>
1550 <h3>Complex Type: <a name="h-1514309680" class="name">BinaryCharacters</a>
1552 <table class="hierarchy">
1554 <th>Super-types:</th>
1562 <table class="properties">
1565 <td>BinaryCharacters</td>
1568 <th>Used by (from the same schema document)</th>
1569 <td>Complex Type <b>
1570 <a href="#h-1124608460">Clade</a>
1576 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1581 <th>Documentation</th>
1582 <td class="documentation"> The names and/or counts of binary characters present, gained, and lost at the root of a
1586 <div class="sample box">
1588 <input type="button" id="h-1514309680_xibox_button" class="control"
1589 onclick="switchState('h-1514309680_xibox'); return false;"
1590 style="display: none"/>
1591 <span class="caption">XML Instance Representation</span>
1593 <div id="h-1514309680_xibox" class="contents">
1594 <div style="margin-left: 0em"><...<br/>
1595 <span style="margin-left: 0.5em"> type="<span class="type">
1596 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1597 <span class="occurs">[0..1]</span>"</span>
1599 <span style="margin-left: 0.5em"> gained_count="<span class="type">
1600 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1601 <span class="occurs">[0..1]</span>"</span>
1603 <span style="margin-left: 0.5em"> lost_count="<span class="type">
1604 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1605 <span class="occurs">[0..1]</span>"</span>
1607 <span style="margin-left: 0.5em"> present_count="<span class="type">
1608 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1609 <span class="occurs">[0..1]</span>"</span>
1611 <span style="margin-left: 0.5em"> absent_count="<span class="type">
1612 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1613 <span class="occurs">[0..1]</span>"</span>> <br/>
1614 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained> <span class="type">
1615 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1616 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained> <span class="occurs">[0..1]</span>
1618 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost> <span class="type">
1619 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1620 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost> <span class="occurs">[0..1]</span>
1622 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present> <span class="type">
1623 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1624 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present> <span class="occurs">[0..1]</span>
1626 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent> <span class="type">
1627 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1628 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent> <span class="occurs">[0..1]</span>
1629 </div></...></div>
1631 <script type="text/javascript">
1633 setState('h-1514309680_xibox', true);
1637 <div class="sample box">
1639 <input type="button" id="h-1514309680_diagram_button" class="control"
1640 onclick="switchState('h-1514309680_diagram'); return false;"
1641 style="display: none"/>
1642 <span class="caption">Diagram</span>
1644 <div id="h-1514309680_diagram" class="contents">
1645 <img usemap="#h-81115689" src="schemaDiagrams/h-81115689.png"/>
1647 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-81115689.map--><map name="h-81115689">
1648 <area shape="rect" alt="h1535743041" coords="278,0,376,40"
1649 href="phyloxml.xsd.html#h1535743041"/>
1651 <area shape="rect" alt="h1535743041" coords="278,50,362,90"
1652 href="phyloxml.xsd.html#h1535743041"/>
1654 <area shape="rect" alt="h1535743041" coords="278,100,383,140"
1655 href="phyloxml.xsd.html#h1535743041"/>
1657 <area shape="rect" alt="h1535743041" coords="278,150,376,190"
1658 href="phyloxml.xsd.html#h1535743041"/>
1662 <script type="text/javascript">
1664 setState('h-1514309680_diagram', true);
1668 <div class="schemaComponent box">
1670 <input type="button" id="h-1514309680_scbox_button" class="control"
1671 onclick="switchState('h-1514309680_scbox'); return false;"
1672 style="display: none"/>
1673 <span class="caption">Schema Component Representation</span>
1675 <div id="h-1514309680_scbox" class="contents">
1676 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1677 <span class="scTag">name</span>="<span class="scContent">BinaryCharacters</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1678 <span class="scTag">name</span>="<span class="scContent">gained</span>" <span class="scTag">type</span>="<span class="scContent">
1680 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1682 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1683 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1684 <span class="scTag">name</span>="<span class="scContent">lost</span>" <span class="scTag">type</span>="<span class="scContent">
1686 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1688 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1689 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1690 <span class="scTag">name</span>="<span class="scContent">present</span>" <span class="scTag">type</span>="<span class="scContent">
1692 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1694 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
1695 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1696 <span class="scTag">name</span>="<span class="scContent">absent</span>" <span class="scTag">type</span>="<span class="scContent">
1698 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacterList" type definition." href="#h1535743041">BinaryCharacterList</a>
1700 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
1701 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1702 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1704 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1706 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1707 <span class="scTag">name</span>="<span class="scContent">gained_count</span>" <span class="scTag">type</span>="<span class="scContent">
1709 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1711 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1712 <span class="scTag">name</span>="<span class="scContent">lost_count</span>" <span class="scTag">type</span>="<span class="scContent">
1714 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1716 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1717 <span class="scTag">name</span>="<span class="scContent">present_count</span>" <span class="scTag">type</span>="<span class="scContent">
1719 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1721 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
1722 <span class="scTag">name</span>="<span class="scContent">absent_count</span>" <span class="scTag">type</span>="<span class="scContent">
1724 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1725 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
1727 <script type="text/javascript">
1729 setState('h-1514309680_scbox', false);
1733 <div style="text-align: right; clear: both;">
1734 <a href="#top">top</a>
1737 <h3>Complex Type: <a name="h-1691165380" class="name">BranchColor</a>
1739 <table class="hierarchy">
1741 <th>Super-types:</th>
1749 <table class="properties">
1752 <td>BranchColor</td>
1755 <th>Used by (from the same schema document)</th>
1756 <td>Complex Type <b>
1757 <a href="#h-1124608460">Clade</a>
1763 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1768 <th>Documentation</th>
1769 <td class="documentation"> This indicates the color of a clade when rendered (the color applies to the whole clade
1770 unless overwritten by the color(s) of sub clades).</td>
1773 <div class="sample box">
1775 <input type="button" id="h-1691165380_xibox_button" class="control"
1776 onclick="switchState('h-1691165380_xibox'); return false;"
1777 style="display: none"/>
1778 <span class="caption">XML Instance Representation</span>
1780 <div id="h-1691165380_xibox" class="contents">
1781 <div style="margin-left: 0em"><...> <br/>
1782 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red> <span class="type">
1783 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red> <span class="occurs">[1]</span>
1785 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green> <span class="type">
1786 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green> <span class="occurs">[1]</span>
1788 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue> <span class="type">
1789 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue> <span class="occurs">[1]</span>
1790 </div></...></div>
1792 <script type="text/javascript">
1794 setState('h-1691165380_xibox', true);
1798 <div class="sample box">
1800 <input type="button" id="h-1691165380_diagram_button" class="control"
1801 onclick="switchState('h-1691165380_diagram'); return false;"
1802 style="display: none"/>
1803 <span class="caption">Diagram</span>
1805 <div id="h-1691165380_diagram" class="contents">
1806 <img usemap="#h-203375637" src="schemaDiagrams/h-203375637.png"/>
1808 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-203375637.map--><map name="h-203375637">
1811 <script type="text/javascript">
1813 setState('h-1691165380_diagram', true);
1817 <div class="schemaComponent box">
1819 <input type="button" id="h-1691165380_scbox_button" class="control"
1820 onclick="switchState('h-1691165380_scbox'); return false;"
1821 style="display: none"/>
1822 <span class="caption">Schema Component Representation</span>
1824 <div id="h-1691165380_scbox" class="contents">
1825 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
1826 <span class="scTag">name</span>="<span class="scContent">BranchColor</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1827 <span class="scTag">name</span>="<span class="scContent">red</span>" <span class="scTag">type</span>="<span class="scContent">
1829 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1831 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1832 <span class="scTag">name</span>="<span class="scContent">green</span>" <span class="scTag">type</span>="<span class="scContent">
1834 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1836 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
1837 <span class="scTag">name</span>="<span class="scContent">blue</span>" <span class="scTag">type</span>="<span class="scContent">
1839 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1840 </span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
1842 <script type="text/javascript">
1844 setState('h-1691165380_scbox', false);
1848 <div style="text-align: right; clear: both;">
1849 <a href="#top">top</a>
1852 <h3>Complex Type: <a name="h-1124608460" class="name">Clade</a>
1854 <table class="hierarchy">
1856 <th>Super-types:</th>
1864 <table class="properties">
1870 <th>Used by (from the same schema document)</th>
1871 <td>Complex Type <b>
1872 <a href="#h535307528">Phylogeny</a>
1873 </b>, Complex Type <b>
1874 <a href="#h-1124608460">Clade</a>
1880 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1885 <th>Documentation</th>
1886 <td class="documentation"> Element Clade is used in a recursive manner to describe the topology of a phylogenetic tree.
1887 The parent branch length of a clade can be described either with the 'branch_length' element or the
1888 'branch_length' attribute (it is not recommended to use both at the same time, though). Usage of the
1889 'branch_length' attribute allows for a less verbose description. Element 'confidence' is used to indicate
1890 the support for a clade/parent branch. Element 'events' is used to describe such events as gene-duplications
1891 at the root node/parent branch of a clade. Element 'width' is the branch width for this clade (including
1892 parent branch). Both 'color' and 'width' elements apply for the whole clade unless overwritten in-sub
1893 clades. Attribute 'id_source' is used to link other elements to a clade (on the xml-level).
1897 <div class="sample box">
1899 <input type="button" id="h-1124608460_xibox_button" class="control"
1900 onclick="switchState('h-1124608460_xibox'); return false;"
1901 style="display: none"/>
1902 <span class="caption">XML Instance Representation</span>
1904 <div id="h-1124608460_xibox" class="contents">
1905 <div style="margin-left: 0em"><...<br/>
1906 <span style="margin-left: 0.5em"> branch_length="<span class="type">
1907 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1908 <span class="occurs">[0..1]</span>"</span>
1910 <span style="margin-left: 0.5em"> id_source="<span class="type">
1911 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
1913 <span class="occurs">[0..1]</span>"</span>> <br/>
1914 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="type">
1915 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="occurs">[0..1]</span>
1917 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:branch_length> <span class="type">
1918 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:branch_length> <span class="occurs">[0..1]</span>
1920 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
1921 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
1922 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..*]</span>
1924 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width> <span class="type">
1925 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width> <span class="occurs">[0..1]</span>
1927 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color> <span class="type">
1928 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BranchColor" type definition." href="#h-1691165380">BranchColor</a>
1929 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color> <span class="occurs">[0..1]</span>
1931 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id> <span class="type">
1932 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
1933 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id> <span class="occurs">[0..1]</span>
1935 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy> <span class="type">
1936 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Taxonomy" type definition." href="#h888650454">Taxonomy</a>
1937 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy> <span class="occurs">[0..*]</span>
1939 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence> <span class="type">
1940 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Sequence" type definition." href="#h-1794244794">Sequence</a>
1941 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence> <span class="occurs">[0..*]</span>
1943 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:events> <span class="type">
1944 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Events" type definition." href="#h-436501026">Events</a>
1945 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:events> <span class="occurs">[0..1]</span>
1947 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters> <span class="type">
1948 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacters" type definition." href="#h-1514309680">BinaryCharacters</a>
1949 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters> <span class="occurs">[0..1]</span>
1951 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution> <span class="type">
1952 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Distribution" type definition." href="#h-979596407">Distribution</a>
1953 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution> <span class="occurs">[0..*]</span>
1955 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="type">
1956 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Date" type definition." href="#h517931443">Date</a>
1957 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="occurs">[0..1]</span>
1959 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:reference> <span class="type">
1960 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Reference" type definition." href="#h401516646">Reference</a>
1961 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:reference> <span class="occurs">[0..*]</span>
1963 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property> <span class="type">
1964 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Property" type definition." href="#h158033242">Property</a>
1965 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property> <span class="occurs">[0..*]</span>
1967 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="type">
1968 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
1969 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="occurs">[0..*]</span>
1971 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1972 </div></...></div>
1974 <script type="text/javascript">
1976 setState('h-1124608460_xibox', true);
1980 <div class="sample box">
1982 <input type="button" id="h-1124608460_diagram_button" class="control"
1983 onclick="switchState('h-1124608460_diagram'); return false;"
1984 style="display: none"/>
1985 <span class="caption">Diagram</span>
1987 <div id="h-1124608460_diagram" class="contents">
1988 <img usemap="#h854822387" src="schemaDiagrams/h854822387.png"/>
1990 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h854822387.map--><map name="h854822387">
1991 <area shape="rect" alt="h-993584945" coords="201,100,327,140"
1992 href="phyloxml.xsd.html#h-993584945"/>
1994 <area shape="rect" alt="h-1691165380" coords="201,200,292,240"
1995 href="phyloxml.xsd.html#h-1691165380"/>
1997 <area shape="rect" alt="h-853091232" coords="201,250,306,290"
1998 href="phyloxml.xsd.html#h-853091232"/>
2000 <area shape="rect" alt="h888650454" coords="201,300,313,340"
2001 href="phyloxml.xsd.html#h888650454"/>
2003 <area shape="rect" alt="h-1794244794" coords="201,350,313,390"
2004 href="phyloxml.xsd.html#h-1794244794"/>
2006 <area shape="rect" alt="h-436501026" coords="201,400,299,440"
2007 href="phyloxml.xsd.html#h-436501026"/>
2009 <area shape="rect" alt="h-1514309680" coords="201,450,376,490"
2010 href="phyloxml.xsd.html#h-1514309680"/>
2012 <area shape="rect" alt="h-979596407" coords="201,500,341,540"
2013 href="phyloxml.xsd.html#h-979596407"/>
2015 <area shape="rect" alt="h517931443" coords="201,550,285,590"
2016 href="phyloxml.xsd.html#h517931443"/>
2018 <area shape="rect" alt="h401516646" coords="201,600,320,640"
2019 href="phyloxml.xsd.html#h401516646"/>
2021 <area shape="rect" alt="h158033242" coords="201,650,313,690"
2022 href="phyloxml.xsd.html#h158033242"/>
2024 <area shape="rect" alt="h-1482113798" coords="115,837,252,863"
2025 href="phyloxml.xsd.html#h-1482113798"/>
2029 <script type="text/javascript">
2031 setState('h-1124608460_diagram', true);
2035 <div class="schemaComponent box">
2037 <input type="button" id="h-1124608460_scbox_button" class="control"
2038 onclick="switchState('h-1124608460_scbox'); return false;"
2039 style="display: none"/>
2040 <span class="caption">Schema Component Representation</span>
2042 <div id="h-1124608460_scbox" class="contents">
2043 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2044 <span class="scTag">name</span>="<span class="scContent">Clade</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2045 <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2047 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2048 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2049 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2050 <span class="scTag">name</span>="<span class="scContent">branch_length</span>" <span class="scTag">type</span>="<span class="scContent">
2052 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2053 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2054 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2055 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2057 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2059 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2060 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2061 <span class="scTag">name</span>="<span class="scContent">width</span>" <span class="scTag">type</span>="<span class="scContent">
2063 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2064 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2065 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2066 <span class="scTag">name</span>="<span class="scContent">color</span>" <span class="scTag">type</span>="<span class="scContent">
2068 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BranchColor" type definition." href="#h-1691165380">BranchColor</a>
2070 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2071 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2072 <span class="scTag">name</span>="<span class="scContent">node_id</span>" <span class="scTag">type</span>="<span class="scContent">
2074 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
2076 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2077 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2078 <span class="scTag">name</span>="<span class="scContent">taxonomy</span>" <span class="scTag">type</span>="<span class="scContent">
2080 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Taxonomy" type definition." href="#h888650454">Taxonomy</a>
2082 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2083 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2084 <span class="scTag">name</span>="<span class="scContent">sequence</span>" <span class="scTag">type</span>="<span class="scContent">
2086 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Sequence" type definition." href="#h-1794244794">Sequence</a>
2088 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2089 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2090 <span class="scTag">name</span>="<span class="scContent">events</span>" <span class="scTag">type</span>="<span class="scContent">
2092 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Events" type definition." href="#h-436501026">Events</a>
2094 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2095 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2096 <span class="scTag">name</span>="<span class="scContent">binary_characters</span>" <span class="scTag">type</span>="<span class="scContent">
2098 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "BinaryCharacters" type definition." href="#h-1514309680">BinaryCharacters</a>
2100 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2101 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2102 <span class="scTag">name</span>="<span class="scContent">distribution</span>" <span class="scTag">type</span>="<span class="scContent">
2104 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Distribution" type definition." href="#h-979596407">Distribution</a>
2106 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2107 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2108 <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
2110 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Date" type definition." href="#h517931443">Date</a>
2112 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2113 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2114 <span class="scTag">name</span>="<span class="scContent">reference</span>" <span class="scTag">type</span>="<span class="scContent">
2116 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Reference" type definition." href="#h401516646">Reference</a>
2118 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2119 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2120 <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
2122 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Property" type definition." href="#h158033242">Property</a>
2124 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2125 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2126 <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
2128 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
2130 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2131 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
2132 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2133 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2134 <span class="scTag">name</span>="<span class="scContent">branch_length</span>" <span class="scTag">type</span>="<span class="scContent">
2136 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2138 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2139 <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
2141 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
2143 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
2145 <script type="text/javascript">
2147 setState('h-1124608460_scbox', false);
2151 <div style="text-align: right; clear: both;">
2152 <a href="#top">top</a>
2155 <h3>Complex Type: <a name="h192331856" class="name">CladeRelation</a>
2157 <table class="hierarchy">
2159 <th>Super-types:</th>
2167 <table class="properties">
2170 <td>CladeRelation</td>
2173 <th>Used by (from the same schema document)</th>
2174 <td>Complex Type <b>
2175 <a href="#h535307528">Phylogeny</a>
2181 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2186 <th>Documentation</th>
2187 <td class="documentation"> This is used to express a typed relationship between two clades. For example it could be
2188 used to describe multiple parents of a clade.</td>
2191 <div class="sample box">
2193 <input type="button" id="h192331856_xibox_button" class="control"
2194 onclick="switchState('h192331856_xibox'); return false;"
2195 style="display: none"/>
2196 <span class="caption">XML Instance Representation</span>
2198 <div id="h192331856_xibox" class="contents">
2199 <div style="margin-left: 0em"><...<br/>
2200 <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
2201 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2203 <span class="occurs">[1]</span>"</span>
2205 <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
2206 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2208 <span class="occurs">[1]</span>"</span>
2210 <span style="margin-left: 0.5em"> distance="<span class="type">
2211 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2212 <span class="occurs">[0..1]</span>"</span>
2214 <span style="margin-left: 0.5em"> type="<span class="type">
2215 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2216 <span class="occurs">[1]</span>"</span>> <br/>
2217 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
2218 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2219 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
2220 </div></...></div>
2222 <script type="text/javascript">
2224 setState('h192331856_xibox', true);
2228 <div class="sample box">
2230 <input type="button" id="h192331856_diagram_button" class="control"
2231 onclick="switchState('h192331856_diagram'); return false;"
2232 style="display: none"/>
2233 <span class="caption">Diagram</span>
2235 <div id="h192331856_diagram" class="contents">
2236 <img usemap="#h1919634775" src="schemaDiagrams/h1919634775.png"/>
2238 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1919634775.map--><map name="h1919634775">
2239 <area shape="rect" alt="h-993584945" coords="257,0,383,40"
2240 href="phyloxml.xsd.html#h-993584945"/>
2242 <area shape="rect" alt="h577349652" coords="171,50,301,76"
2243 href="phyloxml.xsd.html#h577349652"/>
2245 <area shape="rect" alt="h577349652" coords="171,86,301,112"
2246 href="phyloxml.xsd.html#h577349652"/>
2250 <script type="text/javascript">
2252 setState('h192331856_diagram', true);
2256 <div class="schemaComponent box">
2258 <input type="button" id="h192331856_scbox_button" class="control"
2259 onclick="switchState('h192331856_scbox'); return false;"
2260 style="display: none"/>
2261 <span class="caption">Schema Component Representation</span>
2263 <div id="h192331856_scbox" class="contents">
2264 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2265 <span class="scTag">name</span>="<span class="scContent">CladeRelation</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2266 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2268 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2270 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2271 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2272 <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
2274 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2276 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2277 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2278 <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
2280 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
2282 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
2283 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2284 <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
2286 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2288 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2289 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2291 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2292 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:complexType</span>></div>
2294 <script type="text/javascript">
2296 setState('h192331856_scbox', false);
2300 <div style="text-align: right; clear: both;">
2301 <a href="#top">top</a>
2304 <h3>Complex Type: <a name="h-993584945" class="name">Confidence</a>
2306 <table class="hierarchy">
2308 <th>Super-types:</th>
2311 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> < <strong>Confidence</strong> (by extension)</td>
2318 <table class="properties">
2324 <th>Used by (from the same schema document)</th>
2325 <td>Complex Type <b>
2326 <a href="#h535307528">Phylogeny</a>
2327 </b>, Complex Type <b>
2328 <a href="#h-1124608460">Clade</a>
2329 </b>, Complex Type <b>
2330 <a href="#h-436501026">Events</a>
2331 </b>, Complex Type <b>
2332 <a href="#h917087604">Annotation</a>
2333 </b>, Complex Type <b>
2334 <a href="#h-802965662">SequenceRelation</a>
2335 </b>, Complex Type <b>
2336 <a href="#h192331856">CladeRelation</a>
2342 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2347 <th>Documentation</th>
2348 <td class="documentation"> A general purpose confidence element. For example this can be used to express the bootstrap
2349 support value of a clade (in which case the 'type' attribute is 'bootstrap').</td>
2352 <div class="sample box">
2354 <input type="button" id="h-993584945_xibox_button" class="control"
2355 onclick="switchState('h-993584945_xibox'); return false;"
2356 style="display: none"/>
2357 <span class="caption">XML Instance Representation</span>
2359 <div id="h-993584945_xibox" class="contents">
2360 <div style="margin-left: 0em"><...<br/>
2361 <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2362 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2363 <span class="occurs">[1]</span>"</span>> <br/>
2364 <span style="margin-left: 1.5em">
2366 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2368 <br/></...></div>
2370 <script type="text/javascript">
2372 setState('h-993584945_xibox', true);
2376 <div class="sample box">
2378 <input type="button" id="h-993584945_diagram_button" class="control"
2379 onclick="switchState('h-993584945_diagram'); return false;"
2380 style="display: none"/>
2381 <span class="caption">Diagram</span>
2383 <div id="h-993584945_diagram" class="contents">
2384 <img usemap="#h1603897912" src="schemaDiagrams/h1603897912.png"/>
2386 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1603897912.map--><map name="h1603897912">
2389 <script type="text/javascript">
2391 setState('h-993584945_diagram', true);
2395 <div class="schemaComponent box">
2397 <input type="button" id="h-993584945_scbox_button" class="control"
2398 onclick="switchState('h-993584945_scbox'); return false;"
2399 style="display: none"/>
2400 <span class="caption">Schema Component Representation</span>
2402 <div id="h-993584945_scbox" class="contents">
2403 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2404 <span class="scTag">name</span>="<span class="scContent">Confidence</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
2405 <span class="scTag">base</span>="<span class="scContent">
2407 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2408 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2409 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2411 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2412 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
2414 <script type="text/javascript">
2416 setState('h-993584945_scbox', false);
2420 <div style="text-align: right; clear: both;">
2421 <a href="#top">top</a>
2424 <h3>Complex Type: <a name="h517931443" class="name">Date</a>
2426 <table class="hierarchy">
2428 <th>Super-types:</th>
2436 <table class="properties">
2442 <th>Used by (from the same schema document)</th>
2443 <td>Complex Type <b>
2444 <a href="#h-1124608460">Clade</a>
2450 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2455 <th>Documentation</th>
2456 <td class="documentation"> A date associated with a clade/node. Its value can be numerical by using the 'value' element
2457 and/or free text with the 'desc' element' (e.g. 'Silurian'). If a numerical value is used, it is recommended
2458 to employ the 'unit' attribute to indicate the type of the numerical value (e.g. 'mya' for 'million years
2459 ago'). The elements 'minimum' and 'maximum' are used the indicate a range/confidence
2463 <div class="sample box">
2465 <input type="button" id="h517931443_xibox_button" class="control"
2466 onclick="switchState('h517931443_xibox'); return false;"
2467 style="display: none"/>
2468 <span class="caption">XML Instance Representation</span>
2470 <div id="h517931443_xibox" class="contents">
2471 <div style="margin-left: 0em"><...<br/>
2472 <span style="margin-left: 0.5em"> unit="<span class="type">
2473 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2474 <span class="occurs">[0..1]</span>"</span>> <br/>
2475 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="type">
2476 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="occurs">[0..1]</span>
2478 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value> <span class="type">
2479 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value> <span class="occurs">[0..1]</span>
2481 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:minimum> <span class="type">
2482 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:minimum> <span class="occurs">[0..1]</span>
2484 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:maximum> <span class="type">
2485 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:maximum> <span class="occurs">[0..1]</span>
2486 </div></...></div>
2488 <script type="text/javascript">
2490 setState('h517931443_xibox', true);
2494 <div class="sample box">
2496 <input type="button" id="h517931443_diagram_button" class="control"
2497 onclick="switchState('h517931443_diagram'); return false;"
2498 style="display: none"/>
2499 <span class="caption">Diagram</span>
2501 <div id="h517931443_diagram" class="contents">
2502 <img usemap="#h169662420" src="schemaDiagrams/h169662420.png"/>
2504 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h169662420.map--><map name="h169662420">
2507 <script type="text/javascript">
2509 setState('h517931443_diagram', true);
2513 <div class="schemaComponent box">
2515 <input type="button" id="h517931443_scbox_button" class="control"
2516 onclick="switchState('h517931443_scbox'); return false;"
2517 style="display: none"/>
2518 <span class="caption">Schema Component Representation</span>
2520 <div id="h517931443_scbox" class="contents">
2521 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2522 <span class="scTag">name</span>="<span class="scContent">Date</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2523 <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
2525 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2526 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2527 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2528 <span class="scTag">name</span>="<span class="scContent">value</span>" <span class="scTag">type</span>="<span class="scContent">
2530 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2531 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2532 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2533 <span class="scTag">name</span>="<span class="scContent">minimum</span>" <span class="scTag">type</span>="<span class="scContent">
2535 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2536 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2537 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2538 <span class="scTag">name</span>="<span class="scContent">maximum</span>" <span class="scTag">type</span>="<span class="scContent">
2540 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2541 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2542 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2543 <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
2545 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2546 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
2548 <script type="text/javascript">
2550 setState('h517931443_scbox', false);
2554 <div style="text-align: right; clear: both;">
2555 <a href="#top">top</a>
2558 <h3>Complex Type: <a name="h-979596407" class="name">Distribution</a>
2560 <table class="hierarchy">
2562 <th>Super-types:</th>
2570 <table class="properties">
2573 <td>Distribution</td>
2576 <th>Used by (from the same schema document)</th>
2577 <td>Complex Type <b>
2578 <a href="#h-1124608460">Clade</a>
2584 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2589 <th>Documentation</th>
2590 <td class="documentation"> The geographic distribution of the items of a clade (species, sequences), intended for
2591 phylogeographic applications. The location can be described either by free text in the 'desc' element and/or
2592 by the coordinates of one or more 'Points' (similar to the 'Point' element in Google's KML format) or by
2596 <div class="sample box">
2598 <input type="button" id="h-979596407_xibox_button" class="control"
2599 onclick="switchState('h-979596407_xibox'); return false;"
2600 style="display: none"/>
2601 <span class="caption">XML Instance Representation</span>
2603 <div id="h-979596407_xibox" class="contents">
2604 <div style="margin-left: 0em"><...> <br/>
2605 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="type">
2606 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="occurs">[0..1]</span>
2608 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point> <span class="type">
2609 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Point" type definition." href="#h-1112505301">Point</a>
2610 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point> <span class="occurs">[0..*]</span>
2612 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:polygon> <span class="type">
2613 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Polygon" type definition." href="#h332351765">Polygon</a>
2614 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:polygon> <span class="occurs">[0..*]</span>
2615 </div></...></div>
2617 <script type="text/javascript">
2619 setState('h-979596407_xibox', true);
2623 <div class="sample box">
2625 <input type="button" id="h-979596407_diagram_button" class="control"
2626 onclick="switchState('h-979596407_diagram'); return false;"
2627 style="display: none"/>
2628 <span class="caption">Diagram</span>
2630 <div id="h-979596407_diagram" class="contents">
2631 <img usemap="#h-265752642" src="schemaDiagrams/h-265752642.png"/>
2633 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-265752642.map--><map name="h-265752642">
2634 <area shape="rect" alt="h-1112505301" coords="250,50,341,90"
2635 href="phyloxml.xsd.html#h-1112505301"/>
2637 <area shape="rect" alt="h332351765" coords="250,100,355,140"
2638 href="phyloxml.xsd.html#h332351765"/>
2642 <script type="text/javascript">
2644 setState('h-979596407_diagram', true);
2648 <div class="schemaComponent box">
2650 <input type="button" id="h-979596407_scbox_button" class="control"
2651 onclick="switchState('h-979596407_scbox'); return false;"
2652 style="display: none"/>
2653 <span class="caption">Schema Component Representation</span>
2655 <div id="h-979596407_scbox" class="contents">
2656 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2657 <span class="scTag">name</span>="<span class="scContent">Distribution</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2658 <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
2660 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2661 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2662 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2663 <span class="scTag">name</span>="<span class="scContent">point</span>" <span class="scTag">type</span>="<span class="scContent">
2665 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Point" type definition." href="#h-1112505301">Point</a>
2667 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
2668 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2669 <span class="scTag">name</span>="<span class="scContent">polygon</span>" <span class="scTag">type</span>="<span class="scContent">
2671 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Polygon" type definition." href="#h332351765">Polygon</a>
2673 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
2675 <script type="text/javascript">
2677 setState('h-979596407_scbox', false);
2681 <div style="text-align: right; clear: both;">
2682 <a href="#top">top</a>
2685 <h3>Complex Type: <a name="h259010940" class="name">DomainArchitecture</a>
2687 <table class="hierarchy">
2689 <th>Super-types:</th>
2697 <table class="properties">
2700 <td>DomainArchitecture</td>
2703 <th>Used by (from the same schema document)</th>
2704 <td>Complex Type <b>
2705 <a href="#h-1794244794">Sequence</a>
2711 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2716 <th>Documentation</th>
2717 <td class="documentation"> This is used describe the domain architecture of a protein. Attribute 'length' is the total
2718 length of the protein</td>
2721 <div class="sample box">
2723 <input type="button" id="h259010940_xibox_button" class="control"
2724 onclick="switchState('h259010940_xibox'); return false;"
2725 style="display: none"/>
2726 <span class="caption">XML Instance Representation</span>
2728 <div id="h259010940_xibox" class="contents">
2729 <div style="margin-left: 0em"><...<br/>
2730 <span style="margin-left: 0.5em"> length="<span class="type">
2731 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2732 <span class="occurs">[0..1]</span>"</span>> <br/>
2733 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain> <span class="type">
2734 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ProteinDomain" type definition." href="#h-1389097534">ProteinDomain</a>
2735 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain> <span class="occurs">[1..*]</span>
2736 </div></...></div>
2738 <script type="text/javascript">
2740 setState('h259010940_xibox', true);
2744 <div class="sample box">
2746 <input type="button" id="h259010940_diagram_button" class="control"
2747 onclick="switchState('h259010940_diagram'); return false;"
2748 style="display: none"/>
2749 <span class="caption">Diagram</span>
2751 <div id="h259010940_diagram" class="contents">
2752 <img usemap="#h-93417557" src="schemaDiagrams/h-93417557.png"/>
2754 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-93417557.map--><map name="h-93417557">
2755 <area shape="rect" alt="h-1389097534" coords="292,0,390,40"
2756 href="phyloxml.xsd.html#h-1389097534"/>
2760 <script type="text/javascript">
2762 setState('h259010940_diagram', true);
2766 <div class="schemaComponent box">
2768 <input type="button" id="h259010940_scbox_button" class="control"
2769 onclick="switchState('h259010940_scbox'); return false;"
2770 style="display: none"/>
2771 <span class="caption">Schema Component Representation</span>
2773 <div id="h259010940_scbox" class="contents">
2774 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2775 <span class="scTag">name</span>="<span class="scContent">DomainArchitecture</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2776 <span class="scTag">name</span>="<span class="scContent">domain</span>" <span class="scTag">type</span>="<span class="scContent">
2778 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ProteinDomain" type definition." href="#h-1389097534">ProteinDomain</a>
2780 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">1</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div></<span class="scTag">xs:sequence</span>></div>
2781 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
2782 <span class="scTag">name</span>="<span class="scContent">length</span>" <span class="scTag">type</span>="<span class="scContent">
2784 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2785 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
2787 <script type="text/javascript">
2789 setState('h259010940_scbox', false);
2793 <div style="text-align: right; clear: both;">
2794 <a href="#top">top</a>
2797 <h3>Complex Type: <a name="h-436501026" class="name">Events</a>
2799 <table class="hierarchy">
2801 <th>Super-types:</th>
2809 <table class="properties">
2815 <th>Used by (from the same schema document)</th>
2816 <td>Complex Type <b>
2817 <a href="#h-1124608460">Clade</a>
2823 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2828 <th>Documentation</th>
2829 <td class="documentation"> Events at the root node of a clade (e.g. one gene duplication). </td>
2832 <div class="sample box">
2834 <input type="button" id="h-436501026_xibox_button" class="control"
2835 onclick="switchState('h-436501026_xibox'); return false;"
2836 style="display: none"/>
2837 <span class="caption">XML Instance Representation</span>
2839 <div id="h-436501026_xibox" class="contents">
2840 <div style="margin-left: 0em"><...> <br/>
2841 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type> <span class="type">
2842 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "EventType" type definition." href="#h1358103055">EventType</a>
2843 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type> <span class="occurs">[0..1]</span>
2845 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications> <span class="type">
2846 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications> <span class="occurs">[0..1]</span>
2848 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations> <span class="type">
2849 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations> <span class="occurs">[0..1]</span>
2851 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses> <span class="type">
2852 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses> <span class="occurs">[0..1]</span>
2854 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
2855 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2856 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
2857 </div></...></div>
2859 <script type="text/javascript">
2861 setState('h-436501026_xibox', true);
2865 <div class="sample box">
2867 <input type="button" id="h-436501026_diagram_button" class="control"
2868 onclick="switchState('h-436501026_diagram'); return false;"
2869 style="display: none"/>
2870 <span class="caption">Diagram</span>
2872 <div id="h-436501026_diagram" class="contents">
2873 <img usemap="#h-1724830583" src="schemaDiagrams/h-1724830583.png"/>
2875 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1724830583.map--><map name="h-1724830583">
2876 <area shape="rect" alt="h1358103055" coords="208,0,292,40"
2877 href="phyloxml.xsd.html#h1358103055"/>
2879 <area shape="rect" alt="h-993584945" coords="208,200,334,240"
2880 href="phyloxml.xsd.html#h-993584945"/>
2884 <script type="text/javascript">
2886 setState('h-436501026_diagram', true);
2890 <div class="schemaComponent box">
2892 <input type="button" id="h-436501026_scbox_button" class="control"
2893 onclick="switchState('h-436501026_scbox'); return false;"
2894 style="display: none"/>
2895 <span class="caption">Schema Component Representation</span>
2897 <div id="h-436501026_scbox" class="contents">
2898 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
2899 <span class="scTag">name</span>="<span class="scContent">Events</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2900 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2902 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "EventType" type definition." href="#h1358103055">EventType</a>
2904 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2905 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2906 <span class="scTag">name</span>="<span class="scContent">duplications</span>" <span class="scTag">type</span>="<span class="scContent">
2908 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2909 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2910 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2911 <span class="scTag">name</span>="<span class="scContent">speciations</span>" <span class="scTag">type</span>="<span class="scContent">
2913 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2914 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2915 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2916 <span class="scTag">name</span>="<span class="scContent">losses</span>" <span class="scTag">type</span>="<span class="scContent">
2918 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2919 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
2920 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
2921 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2923 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
2925 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
2927 <script type="text/javascript">
2929 setState('h-436501026_scbox', false);
2933 <div style="text-align: right; clear: both;">
2934 <a href="#top">top</a>
2937 <h3>Complex Type: <a name="h-853091232" class="name">Id</a>
2939 <table class="hierarchy">
2941 <th>Super-types:</th>
2944 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>Id</strong> (by extension)</td>
2951 <table class="properties">
2957 <th>Used by (from the same schema document)</th>
2958 <td>Complex Type <b>
2959 <a href="#h535307528">Phylogeny</a>
2960 </b>, Complex Type <b>
2961 <a href="#h-1124608460">Clade</a>
2962 </b>, Complex Type <b>
2963 <a href="#h888650454">Taxonomy</a>
2969 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2974 <th>Documentation</th>
2975 <td class="documentation"> A general purpose identifier element. Allows to indicate the provider (or authority) of an
2979 <div class="sample box">
2981 <input type="button" id="h-853091232_xibox_button" class="control"
2982 onclick="switchState('h-853091232_xibox'); return false;"
2983 style="display: none"/>
2984 <span class="caption">XML Instance Representation</span>
2986 <div id="h-853091232_xibox" class="contents">
2987 <div style="margin-left: 0em"><...<br/>
2988 <span style="margin-left: 0.5em" class="newFields"> provider="<span class="type">
2989 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2990 <span class="occurs">[0..1]</span>"</span>> <br/>
2991 <span style="margin-left: 1.5em">
2993 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2995 <br/></...></div>
2997 <script type="text/javascript">
2999 setState('h-853091232_xibox', true);
3003 <div class="sample box">
3005 <input type="button" id="h-853091232_diagram_button" class="control"
3006 onclick="switchState('h-853091232_diagram'); return false;"
3007 style="display: none"/>
3008 <span class="caption">Diagram</span>
3010 <div id="h-853091232_diagram" class="contents">
3011 <img usemap="#h-1484760249" src="schemaDiagrams/h-1484760249.png"/>
3013 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1484760249.map--><map name="h-1484760249">
3016 <script type="text/javascript">
3018 setState('h-853091232_diagram', true);
3022 <div class="schemaComponent box">
3024 <input type="button" id="h-853091232_scbox_button" class="control"
3025 onclick="switchState('h-853091232_scbox'); return false;"
3026 style="display: none"/>
3027 <span class="caption">Schema Component Representation</span>
3029 <div id="h-853091232_scbox" class="contents">
3030 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3031 <span class="scTag">name</span>="<span class="scContent">Id</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
3032 <span class="scTag">base</span>="<span class="scContent">
3034 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3035 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3036 <span class="scTag">name</span>="<span class="scContent">provider</span>" <span class="scTag">type</span>="<span class="scContent">
3038 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3039 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
3041 <script type="text/javascript">
3043 setState('h-853091232_scbox', false);
3047 <div style="text-align: right; clear: both;">
3048 <a href="#top">top</a>
3051 <h3>Complex Type: <a name="h-213750342" class="name">MolSeq</a>
3053 <table class="hierarchy">
3055 <th>Super-types:</th>
3058 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>MolSeq</strong> (by extension)</td>
3065 <table class="properties">
3071 <th>Used by (from the same schema document)</th>
3072 <td>Complex Type <b>
3073 <a href="#h-1794244794">Sequence</a>
3079 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3084 <th>Documentation</th>
3085 <td class="documentation"> Element 'mol_seq' is used to store molecular sequences. The 'is_aligned' attribute is used
3086 to indicated that this molecular sequence is aligned with all other sequences in the same phylogeny for
3087 which 'is aligned' is true as well (which, in most cases, means that gaps were introduced, and that all
3088 sequences for which 'is aligned' is true must have the same length).</td>
3091 <div class="sample box">
3093 <input type="button" id="h-213750342_xibox_button" class="control"
3094 onclick="switchState('h-213750342_xibox'); return false;"
3095 style="display: none"/>
3096 <span class="caption">XML Instance Representation</span>
3098 <div id="h-213750342_xibox" class="contents">
3099 <div style="margin-left: 0em"><...<br/>
3100 <span style="margin-left: 0.5em" class="newFields"> is_aligned="<span class="type">
3101 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3102 <span class="occurs">[0..1]</span>"</span>> <br/>
3103 <span style="margin-left: 1.5em">
3105 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3107 <br/></...></div>
3109 <script type="text/javascript">
3111 setState('h-213750342_xibox', true);
3115 <div class="sample box">
3117 <input type="button" id="h-213750342_diagram_button" class="control"
3118 onclick="switchState('h-213750342_diagram'); return false;"
3119 style="display: none"/>
3120 <span class="caption">Diagram</span>
3122 <div id="h-213750342_diagram" class="contents">
3123 <img usemap="#h-100858323" src="schemaDiagrams/h-100858323.png"/>
3125 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-100858323.map--><map name="h-100858323">
3128 <script type="text/javascript">
3130 setState('h-213750342_diagram', true);
3134 <div class="schemaComponent box">
3136 <input type="button" id="h-213750342_scbox_button" class="control"
3137 onclick="switchState('h-213750342_scbox'); return false;"
3138 style="display: none"/>
3139 <span class="caption">Schema Component Representation</span>
3141 <div id="h-213750342_scbox" class="contents">
3142 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3143 <span class="scTag">name</span>="<span class="scContent">MolSeq</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
3144 <span class="scTag">base</span>="<span class="scContent">
3146 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3147 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3148 <span class="scTag">name</span>="<span class="scContent">is_aligned</span>" <span class="scTag">type</span>="<span class="scContent">
3150 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3151 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
3153 <script type="text/javascript">
3155 setState('h-213750342_scbox', false);
3159 <div style="text-align: right; clear: both;">
3160 <a href="#top">top</a>
3163 <h3>Complex Type: <a name="h535307528" class="name">Phylogeny</a>
3165 <table class="hierarchy">
3167 <th>Super-types:</th>
3175 <table class="properties">
3181 <th>Used by (from the same schema document)</th>
3182 <td>Complex Type <b>
3183 <a href="#h155831896">Phyloxml</a>
3189 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3194 <th>Documentation</th>
3195 <td class="documentation"> Element Phylogeny is used to represent a phylogeny. The required attribute 'rooted' is used
3196 to indicate whether the phylogeny is rooted or not. The attribute 'rerootable' can be used to indicate that
3197 the phylogeny is not allowed to be rooted differently (i.e. because it is associated with root dependent
3198 data, such as gene duplications). The attribute 'type' can be used to indicate the type of phylogeny (i.e.
3199 'gene tree'). It is recommended to use the attribute 'branch_length_unit' if the phylogeny has branch
3200 lengths. Element clade is used in a recursive manner to describe the topology of a phylogenetic
3204 <div class="sample box">
3206 <input type="button" id="h535307528_xibox_button" class="control"
3207 onclick="switchState('h535307528_xibox'); return false;"
3208 style="display: none"/>
3209 <span class="caption">XML Instance Representation</span>
3211 <div id="h535307528_xibox" class="contents">
3212 <div style="margin-left: 0em"><...<br/>
3213 <span style="margin-left: 0.5em"> rooted="<span class="type">
3214 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3215 <span class="occurs">[1]</span>"</span>
3217 <span style="margin-left: 0.5em"> rerootable="<span class="type">
3218 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3219 <span class="occurs">[0..1]</span>"</span>
3221 <span style="margin-left: 0.5em"> branch_length_unit="<span class="type">
3222 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3223 <span class="occurs">[0..1]</span>"</span>
3225 <span style="margin-left: 0.5em"> type="<span class="type">
3226 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3227 <span class="occurs">[0..1]</span>"</span>> <br/>
3228 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="type">
3229 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="occurs">[0..1]</span>
3231 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="type">
3232 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
3233 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="occurs">[0..1]</span>
3235 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description> <span class="type">
3236 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description> <span class="occurs">[0..1]</span>
3238 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="type">
3239 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date> <span class="occurs">[0..1]</span>
3241 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
3242 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
3243 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..*]</span>
3245 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="type">
3246 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
3247 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade> <span class="occurs">[0..1]</span>
3249 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation> <span class="type">
3250 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CladeRelation" type definition." href="#h192331856">CladeRelation</a>
3251 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation> <span class="occurs">[0..*]</span>
3253 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation> <span class="type">
3254 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelation" type definition." href="#h-802965662">SequenceRelation</a>
3255 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation> <span class="occurs">[0..*]</span>
3257 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property> <span class="type">
3258 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Property" type definition." href="#h158033242">Property</a>
3259 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property> <span class="occurs">[0..*]</span>
3261 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3262 </div></...></div>
3264 <script type="text/javascript">
3266 setState('h535307528_xibox', true);
3270 <div class="sample box">
3272 <input type="button" id="h535307528_diagram_button" class="control"
3273 onclick="switchState('h535307528_diagram'); return false;"
3274 style="display: none"/>
3275 <span class="caption">Diagram</span>
3277 <div id="h535307528_diagram" class="contents">
3278 <img usemap="#h731810719" src="schemaDiagrams/h731810719.png"/>
3280 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h731810719.map--><map name="h731810719">
3281 <area shape="rect" alt="h-853091232" coords="229,50,305,90"
3282 href="phyloxml.xsd.html#h-853091232"/>
3284 <area shape="rect" alt="h-993584945" coords="229,200,355,240"
3285 href="phyloxml.xsd.html#h-993584945"/>
3287 <area shape="rect" alt="h-1124608460" coords="229,250,320,290"
3288 href="phyloxml.xsd.html#h-1124608460"/>
3290 <area shape="rect" alt="h192331856" coords="229,300,383,340"
3291 href="phyloxml.xsd.html#h192331856"/>
3293 <area shape="rect" alt="h-802965662" coords="229,350,404,390"
3294 href="phyloxml.xsd.html#h-802965662"/>
3296 <area shape="rect" alt="h158033242" coords="229,400,341,440"
3297 href="phyloxml.xsd.html#h158033242"/>
3301 <script type="text/javascript">
3303 setState('h535307528_diagram', true);
3307 <div class="schemaComponent box">
3309 <input type="button" id="h535307528_scbox_button" class="control"
3310 onclick="switchState('h535307528_scbox'); return false;"
3311 style="display: none"/>
3312 <span class="caption">Schema Component Representation</span>
3314 <div id="h535307528_scbox" class="contents">
3315 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3316 <span class="scTag">name</span>="<span class="scContent">Phylogeny</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3317 <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
3319 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3320 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3321 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3322 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3324 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
3326 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3327 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3328 <span class="scTag">name</span>="<span class="scContent">description</span>" <span class="scTag">type</span>="<span class="scContent">
3330 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3331 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3332 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3333 <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
3335 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span>
3336 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3337 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3338 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3340 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
3342 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3343 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3344 <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
3346 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Clade" type definition." href="#h-1124608460">Clade</a>
3348 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
3349 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3350 <span class="scTag">name</span>="<span class="scContent">clade_relation</span>" <span class="scTag">type</span>="<span class="scContent">
3352 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "CladeRelation" type definition." href="#h192331856">CladeRelation</a>
3354 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3355 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3356 <span class="scTag">name</span>="<span class="scContent">sequence_relation</span>" <span class="scTag">type</span>="<span class="scContent">
3358 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelation" type definition." href="#h-802965662">SequenceRelation</a>
3360 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3361 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3362 <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
3364 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Property" type definition." href="#h158033242">Property</a>
3366 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3367 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
3368 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
3369 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3370 <span class="scTag">name</span>="<span class="scContent">rooted</span>" <span class="scTag">type</span>="<span class="scContent">
3372 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3373 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3374 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3375 <span class="scTag">name</span>="<span class="scContent">rerootable</span>" <span class="scTag">type</span>="<span class="scContent">
3377 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3379 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3380 <span class="scTag">name</span>="<span class="scContent">branch_length_unit</span>" <span class="scTag">type</span>="<span class="scContent">
3382 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3384 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3385 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3387 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3388 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
3390 <script type="text/javascript">
3392 setState('h535307528_scbox', false);
3396 <div style="text-align: right; clear: both;">
3397 <a href="#top">top</a>
3400 <h3>Complex Type: <a name="h155831896" class="name">Phyloxml</a>
3402 <table class="hierarchy">
3404 <th>Super-types:</th>
3412 <table class="properties">
3418 <th>Used by (from the same schema document)</th>
3420 <a href="#h270234806">phyloxml</a>
3426 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3431 <th>Documentation</th>
3432 <td class="documentation"> 'phyloxml' is the name of the root element. Phyloxml contains an arbitrary number of
3433 'phylogeny' elements (each representing one phylogeny) possibly followed by elements from other namespaces.
3437 <div class="sample box">
3439 <input type="button" id="h155831896_xibox_button" class="control"
3440 onclick="switchState('h155831896_xibox'); return false;"
3441 style="display: none"/>
3442 <span class="caption">XML Instance Representation</span>
3444 <div id="h155831896_xibox" class="contents">
3445 <div style="margin-left: 0em"><...> <br/>
3446 <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
3447 <span class="occurs">[1..*]</span>
3450 <div style="margin-left: 3em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="type">
3451 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phylogeny" type definition." href="#h535307528">Phylogeny</a>
3452 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny> <span class="occurs">[0..*]</span>
3454 <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3456 <span class="group" style="margin-left: 1.5em">End Sequence</span>
3457 <br/></...></div>
3459 <script type="text/javascript">
3461 setState('h155831896_xibox', true);
3465 <div class="sample box">
3467 <input type="button" id="h155831896_diagram_button" class="control"
3468 onclick="switchState('h155831896_diagram'); return false;"
3469 style="display: none"/>
3470 <span class="caption">Diagram</span>
3472 <div id="h155831896_diagram" class="contents">
3473 <img usemap="#h-354757553" src="schemaDiagrams/h-354757553.png"/>
3475 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-354757553.map--><map name="h-354757553">
3476 <area shape="rect" alt="h535307528" coords="222,0,341,40"
3477 href="phyloxml.xsd.html#h535307528"/>
3481 <script type="text/javascript">
3483 setState('h155831896_diagram', true);
3487 <div class="schemaComponent box">
3489 <input type="button" id="h155831896_scbox_button" class="control"
3490 onclick="switchState('h155831896_scbox'); return false;"
3491 style="display: none"/>
3492 <span class="caption">Schema Component Representation</span>
3494 <div id="h155831896_scbox" class="contents">
3495 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3496 <span class="scTag">name</span>="<span class="scContent">Phyloxml</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>
3497 <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3498 <span class="scTag">name</span>="<span class="scContent">phylogeny</span>" <span class="scTag">type</span>="<span class="scContent">
3500 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Phylogeny" type definition." href="#h535307528">Phylogeny</a>
3502 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
3503 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
3504 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
3506 <script type="text/javascript">
3508 setState('h155831896_scbox', false);
3512 <div style="text-align: right; clear: both;">
3513 <a href="#top">top</a>
3516 <h3>Complex Type: <a name="h-1112505301" class="name">Point</a>
3518 <table class="hierarchy">
3520 <th>Super-types:</th>
3528 <table class="properties">
3534 <th>Used by (from the same schema document)</th>
3535 <td>Complex Type <b>
3536 <a href="#h-979596407">Distribution</a>
3537 </b>, Complex Type <b>
3538 <a href="#h332351765">Polygon</a>
3544 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3549 <th>Documentation</th>
3550 <td class="documentation"> The coordinates of a point with an optional altitude (used by element 'Distribution').
3551 Required attributes are the 'geodetic_datum' used to indicate the geodetic datum (also called 'map datum',
3552 for example Google's KML uses 'WGS84'). Attribute 'alt_unit' is the unit for the altitude (e.g. 'meter').
3556 <div class="sample box">
3558 <input type="button" id="h-1112505301_xibox_button" class="control"
3559 onclick="switchState('h-1112505301_xibox'); return false;"
3560 style="display: none"/>
3561 <span class="caption">XML Instance Representation</span>
3563 <div id="h-1112505301_xibox" class="contents">
3564 <div style="margin-left: 0em"><...<br/>
3565 <span style="margin-left: 0.5em"> geodetic_datum="<span class="type">
3566 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3567 <span class="occurs">[1]</span>"</span>
3569 <span style="margin-left: 0.5em"> alt_unit="<span class="type">
3570 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3571 <span class="occurs">[0..1]</span>"</span>> <br/>
3572 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lat> <span class="type">
3573 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lat> <span class="occurs">[1]</span>
3575 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:long> <span class="type">
3576 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:long> <span class="occurs">[1]</span>
3578 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:alt> <span class="type">
3579 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:alt> <span class="occurs">[0..1]</span>
3580 </div></...></div>
3582 <script type="text/javascript">
3584 setState('h-1112505301_xibox', true);
3588 <div class="sample box">
3590 <input type="button" id="h-1112505301_diagram_button" class="control"
3591 onclick="switchState('h-1112505301_diagram'); return false;"
3592 style="display: none"/>
3593 <span class="caption">Diagram</span>
3595 <div id="h-1112505301_diagram" class="contents">
3596 <img usemap="#h2137002076" src="schemaDiagrams/h2137002076.png"/>
3598 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h2137002076.map--><map name="h2137002076">
3601 <script type="text/javascript">
3603 setState('h-1112505301_diagram', true);
3607 <div class="schemaComponent box">
3609 <input type="button" id="h-1112505301_scbox_button" class="control"
3610 onclick="switchState('h-1112505301_scbox'); return false;"
3611 style="display: none"/>
3612 <span class="caption">Schema Component Representation</span>
3614 <div id="h-1112505301_scbox" class="contents">
3615 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3616 <span class="scTag">name</span>="<span class="scContent">Point</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3617 <span class="scTag">name</span>="<span class="scContent">lat</span>" <span class="scTag">type</span>="<span class="scContent">
3619 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3621 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3622 <span class="scTag">name</span>="<span class="scContent">long</span>" <span class="scTag">type</span>="<span class="scContent">
3624 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3626 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3627 <span class="scTag">name</span>="<span class="scContent">alt</span>" <span class="scTag">type</span>="<span class="scContent">
3629 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3630 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
3631 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3632 <span class="scTag">name</span>="<span class="scContent">geodetic_datum</span>" <span class="scTag">type</span>="<span class="scContent">
3634 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3635 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3636 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3637 <span class="scTag">name</span>="<span class="scContent">alt_unit</span>" <span class="scTag">type</span>="<span class="scContent">
3639 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3640 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
3642 <script type="text/javascript">
3644 setState('h-1112505301_scbox', false);
3648 <div style="text-align: right; clear: both;">
3649 <a href="#top">top</a>
3652 <h3>Complex Type: <a name="h332351765" class="name">Polygon</a>
3654 <table class="hierarchy">
3656 <th>Super-types:</th>
3664 <table class="properties">
3670 <th>Used by (from the same schema document)</th>
3671 <td>Complex Type <b>
3672 <a href="#h-979596407">Distribution</a>
3678 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3683 <th>Documentation</th>
3684 <td class="documentation"> A polygon defined by a list of 'Points' (used by element 'Distribution').
3688 <div class="sample box">
3690 <input type="button" id="h332351765_xibox_button" class="control"
3691 onclick="switchState('h332351765_xibox'); return false;"
3692 style="display: none"/>
3693 <span class="caption">XML Instance Representation</span>
3695 <div id="h332351765_xibox" class="contents">
3696 <div style="margin-left: 0em"><...> <br/>
3697 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point> <span class="type">
3698 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Point" type definition." href="#h-1112505301">Point</a>
3699 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point> <span class="occurs">[3..*]</span>
3700 </div></...></div>
3702 <script type="text/javascript">
3704 setState('h332351765_xibox', true);
3708 <div class="sample box">
3710 <input type="button" id="h332351765_diagram_button" class="control"
3711 onclick="switchState('h332351765_diagram'); return false;"
3712 style="display: none"/>
3713 <span class="caption">Diagram</span>
3715 <div id="h332351765_diagram" class="contents">
3716 <img usemap="#h555770290" src="schemaDiagrams/h555770290.png"/>
3718 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h555770290.map--><map name="h555770290">
3719 <area shape="rect" alt="h-1112505301" coords="215,0,306,40"
3720 href="phyloxml.xsd.html#h-1112505301"/>
3724 <script type="text/javascript">
3726 setState('h332351765_diagram', true);
3730 <div class="schemaComponent box">
3732 <input type="button" id="h332351765_scbox_button" class="control"
3733 onclick="switchState('h332351765_scbox'); return false;"
3734 style="display: none"/>
3735 <span class="caption">Schema Component Representation</span>
3737 <div id="h332351765_scbox" class="contents">
3738 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3739 <span class="scTag">name</span>="<span class="scContent">Polygon</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
3740 <span class="scTag">name</span>="<span class="scContent">point</span>" <span class="scTag">type</span>="<span class="scContent">
3742 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Point" type definition." href="#h-1112505301">Point</a>
3744 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">3</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div></<span class="scTag">xs:sequence</span>></div></<span class="scTag">xs:complexType</span>></div>
3746 <script type="text/javascript">
3748 setState('h332351765_scbox', false);
3752 <div style="text-align: right; clear: both;">
3753 <a href="#top">top</a>
3756 <h3>Complex Type: <a name="h158033242" class="name">Property</a>
3758 <table class="hierarchy">
3760 <th>Super-types:</th>
3768 <table class="properties">
3774 <th>Used by (from the same schema document)</th>
3775 <td>Complex Type <b>
3776 <a href="#h535307528">Phylogeny</a>
3777 </b>, Complex Type <b>
3778 <a href="#h-1124608460">Clade</a>
3779 </b>, Complex Type <b>
3780 <a href="#h917087604">Annotation</a>
3786 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3791 <th>Documentation</th>
3792 <td class="documentation"> Property allows for typed and referenced properties from external resources to be attached
3793 to 'Phylogeny', 'Clade', and 'Annotation'. The value of a property is its mixed (free text) content.
3794 Attribute 'datatype' indicates the type of a property and is limited to xsd-datatypes (e.g. 'xsd:string',
3795 'xsd:boolean', 'xsd:integer', 'xsd:decimal', 'xsd:float', 'xsd:double', 'xsd:date', 'xsd:anyURI'). Attribute
3796 'applies_to' indicates the item to which a property applies to (e.g. 'node' for the parent node of a clade,
3797 'parent_branch' for the parent branch of a clade). Attribute 'id_ref' allows to attached a property
3798 specifically to one element (on the xml-level). Optional attribute 'unit' is used to indicate the unit of
3799 the property. An example: <property datatype="xsd:integer" ref="NOAA:depth" applies_to="clade"
3800 unit="METRIC:m"> 200 </property> </td>
3803 <div class="sample box">
3805 <input type="button" id="h158033242_xibox_button" class="control"
3806 onclick="switchState('h158033242_xibox'); return false;"
3807 style="display: none"/>
3808 <span class="caption">XML Instance Representation</span>
3810 <div id="h158033242_xibox" class="contents">
3811 <div style="margin-left: 0em"><...<br/>
3812 <span style="margin-left: 0.5em"> ref="<span class="type">
3813 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ref" type definition." href="#h-675984882">ref</a>
3815 <span class="occurs">[1]</span>"</span>
3817 <span style="margin-left: 0.5em"> unit="<span class="type">
3818 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ref" type definition." href="#h-675984882">ref</a>
3820 <span class="occurs">[0..1]</span>"</span>
3822 <span style="margin-left: 0.5em"> datatype="<span class="type">
3823 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "PropertyDataType" type definition." href="#h-54338178">PropertyDataType</a>
3825 <span class="occurs">[1]</span>"</span>
3827 <span style="margin-left: 0.5em"> applies_to="<span class="type">
3828 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "AppliesTo" type definition." href="#h-763252414">AppliesTo</a>
3830 <span class="occurs">[1]</span>"</span>
3832 <span style="margin-left: 0.5em"> id_ref="<span class="type">
3833 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
3835 <span class="occurs">[0..1]</span>"</span>/> </div>
3837 <script type="text/javascript">
3839 setState('h158033242_xibox', true);
3843 <div class="sample box">
3845 <input type="button" id="h158033242_diagram_button" class="control"
3846 onclick="switchState('h158033242_diagram'); return false;"
3847 style="display: none"/>
3848 <span class="caption">Diagram</span>
3850 <div id="h158033242_diagram" class="contents">
3851 <img usemap="#h-411495795" src="schemaDiagrams/h-411495795.png"/>
3853 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-411495795.map--><map name="h-411495795">
3854 <area shape="rect" alt="h-675984882" coords="136,0,231,26"
3855 href="phyloxml.xsd.html#h-675984882"/>
3857 <area shape="rect" alt="h-675984882" coords="136,36,238,62"
3858 href="phyloxml.xsd.html#h-675984882"/>
3860 <area shape="rect" alt="h-54338178" coords="136,72,266,98"
3861 href="phyloxml.xsd.html#h-54338178"/>
3863 <area shape="rect" alt="h-763252414" coords="136,108,280,134"
3864 href="phyloxml.xsd.html#h-763252414"/>
3866 <area shape="rect" alt="h577349652" coords="136,144,252,170"
3867 href="phyloxml.xsd.html#h577349652"/>
3871 <script type="text/javascript">
3873 setState('h158033242_diagram', true);
3877 <div class="schemaComponent box">
3879 <input type="button" id="h158033242_scbox_button" class="control"
3880 onclick="switchState('h158033242_scbox'); return false;"
3881 style="display: none"/>
3882 <span class="caption">Schema Component Representation</span>
3884 <div id="h158033242_scbox" class="contents">
3885 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
3886 <span class="scTag">name</span>="<span class="scContent">Property</span>" <span class="scTag">mixed</span>="<span class="scContent">true</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3887 <span class="scTag">name</span>="<span class="scContent">ref</span>" <span class="scTag">type</span>="<span class="scContent">
3889 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ref" type definition." href="#h-675984882">ref</a>
3891 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3892 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3893 <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
3895 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "ref" type definition." href="#h-675984882">ref</a>
3898 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3899 <span class="scTag">name</span>="<span class="scContent">datatype</span>" <span class="scTag">type</span>="<span class="scContent">
3901 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "PropertyDataType" type definition." href="#h-54338178">PropertyDataType</a>
3903 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3904 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3905 <span class="scTag">name</span>="<span class="scContent">applies_to</span>" <span class="scTag">type</span>="<span class="scContent">
3907 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "AppliesTo" type definition." href="#h-763252414">AppliesTo</a>
3909 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
3910 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
3911 <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
3913 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
3915 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
3917 <script type="text/javascript">
3919 setState('h158033242_scbox', false);
3923 <div style="text-align: right; clear: both;">
3924 <a href="#top">top</a>
3927 <h3>Complex Type: <a name="h-1389097534" class="name">ProteinDomain</a>
3929 <table class="hierarchy">
3931 <th>Super-types:</th>
3934 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>ProteinDomain</strong> (by extension)</td>
3941 <table class="properties">
3944 <td>ProteinDomain</td>
3947 <th>Used by (from the same schema document)</th>
3948 <td>Complex Type <b>
3949 <a href="#h259010940">DomainArchitecture</a>
3955 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3960 <th>Documentation</th>
3961 <td class="documentation"> To represent an individual domain in a domain architecture. The name/unique identifier is
3962 described via the 'id' attribute. 'confidence' can be used to store (i.e.) E-values.</td>
3965 <div class="sample box">
3967 <input type="button" id="h-1389097534_xibox_button" class="control"
3968 onclick="switchState('h-1389097534_xibox'); return false;"
3969 style="display: none"/>
3970 <span class="caption">XML Instance Representation</span>
3972 <div id="h-1389097534_xibox" class="contents">
3973 <div style="margin-left: 0em"><...<br/>
3974 <span style="margin-left: 0.5em" class="newFields"> from="<span class="type">
3975 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3976 <span class="occurs">[1]</span>"</span>
3978 <span style="margin-left: 0.5em" class="newFields"> to="<span class="type">
3979 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3980 <span class="occurs">[1]</span>"</span>
3982 <span style="margin-left: 0.5em" class="newFields"> confidence="<span class="type">
3983 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3984 <span class="occurs">[0..1]</span>"</span>
3986 <span style="margin-left: 0.5em" class="newFields"> id="<span class="type">
3987 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3988 <span class="occurs">[0..1]</span>"</span>> <br/>
3989 <span style="margin-left: 1.5em">
3991 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3993 <br/></...></div>
3995 <script type="text/javascript">
3997 setState('h-1389097534_xibox', true);
4001 <div class="sample box">
4003 <input type="button" id="h-1389097534_diagram_button" class="control"
4004 onclick="switchState('h-1389097534_diagram'); return false;"
4005 style="display: none"/>
4006 <span class="caption">Diagram</span>
4008 <div id="h-1389097534_diagram" class="contents">
4009 <img usemap="#h1501379365" src="schemaDiagrams/h1501379365.png"/>
4011 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1501379365.map--><map name="h1501379365">
4014 <script type="text/javascript">
4016 setState('h-1389097534_diagram', true);
4020 <div class="schemaComponent box">
4022 <input type="button" id="h-1389097534_scbox_button" class="control"
4023 onclick="switchState('h-1389097534_scbox'); return false;"
4024 style="display: none"/>
4025 <span class="caption">Schema Component Representation</span>
4027 <div id="h-1389097534_scbox" class="contents">
4028 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
4029 <span class="scTag">name</span>="<span class="scContent">ProteinDomain</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
4030 <span class="scTag">base</span>="<span class="scContent">
4032 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4033 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4034 <span class="scTag">name</span>="<span class="scContent">from</span>" <span class="scTag">type</span>="<span class="scContent">
4036 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
4037 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
4038 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4039 <span class="scTag">name</span>="<span class="scContent">to</span>" <span class="scTag">type</span>="<span class="scContent">
4041 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
4042 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
4043 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4044 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
4046 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4048 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4049 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
4051 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4052 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
4054 <script type="text/javascript">
4056 setState('h-1389097534_scbox', false);
4060 <div style="text-align: right; clear: both;">
4061 <a href="#top">top</a>
4064 <h3>Complex Type: <a name="h401516646" class="name">Reference</a>
4066 <table class="hierarchy">
4068 <th>Super-types:</th>
4076 <table class="properties">
4082 <th>Used by (from the same schema document)</th>
4083 <td>Complex Type <b>
4084 <a href="#h-1124608460">Clade</a>
4090 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4095 <th>Documentation</th>
4096 <td class="documentation"> A literature reference for a clade. It is recommended to use the 'doi' attribute instead of
4097 the free text 'desc' element whenever possible. </td>
4100 <div class="sample box">
4102 <input type="button" id="h401516646_xibox_button" class="control"
4103 onclick="switchState('h401516646_xibox'); return false;"
4104 style="display: none"/>
4105 <span class="caption">XML Instance Representation</span>
4107 <div id="h401516646_xibox" class="contents">
4108 <div style="margin-left: 0em"><...<br/>
4109 <span style="margin-left: 0.5em"> doi="<span class="type">
4110 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4111 <span class="occurs">[0..1]</span>"</span>> <br/>
4112 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="type">
4113 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc> <span class="occurs">[0..1]</span>
4114 </div></...></div>
4116 <script type="text/javascript">
4118 setState('h401516646_xibox', true);
4122 <div class="sample box">
4124 <input type="button" id="h401516646_diagram_button" class="control"
4125 onclick="switchState('h401516646_diagram'); return false;"
4126 style="display: none"/>
4127 <span class="caption">Diagram</span>
4129 <div id="h401516646_diagram" class="contents">
4130 <img usemap="#h1727164161" src="schemaDiagrams/h1727164161.png"/>
4132 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1727164161.map--><map name="h1727164161">
4135 <script type="text/javascript">
4137 setState('h401516646_diagram', true);
4141 <div class="schemaComponent box">
4143 <input type="button" id="h401516646_scbox_button" class="control"
4144 onclick="switchState('h401516646_scbox'); return false;"
4145 style="display: none"/>
4146 <span class="caption">Schema Component Representation</span>
4148 <div id="h401516646_scbox" class="contents">
4149 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
4150 <span class="scTag">name</span>="<span class="scContent">Reference</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4151 <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
4153 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4154 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
4155 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4156 <span class="scTag">name</span>="<span class="scContent">doi</span>" <span class="scTag">type</span>="<span class="scContent">
4158 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4159 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
4161 <script type="text/javascript">
4163 setState('h401516646_scbox', false);
4167 <div style="text-align: right; clear: both;">
4168 <a href="#top">top</a>
4171 <h3>Complex Type: <a name="h-1794244794" class="name">Sequence</a>
4173 <table class="hierarchy">
4175 <th>Super-types:</th>
4183 <table class="properties">
4189 <th>Used by (from the same schema document)</th>
4190 <td>Complex Type <b>
4191 <a href="#h-1124608460">Clade</a>
4197 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4202 <th>Documentation</th>
4203 <td class="documentation"> Element Sequence is used to represent a molecular sequence (Protein, DNA, RNA) associated
4204 with a node. 'symbol' is a short (maximal ten characters) symbol of the sequence (e.g. 'ACTM') whereas
4205 'name' is used for the full name (e.g. 'muscle Actin'). 'location' is used for the location of a sequence on
4206 a genome/chromosome. The actual sequence can be stored with the 'mol_seq' element. Attribute 'type' is used
4207 to indicate the type of sequence ('dna', 'rna', or 'protein'). One intended use for 'id_ref' is to link a
4208 sequence to a taxonomy (via the taxonomy's 'id_source') in case of multiple sequences and taxonomies per
4212 <div class="sample box">
4214 <input type="button" id="h-1794244794_xibox_button" class="control"
4215 onclick="switchState('h-1794244794_xibox'); return false;"
4216 style="display: none"/>
4217 <span class="caption">XML Instance Representation</span>
4219 <div id="h-1794244794_xibox" class="contents">
4220 <div style="margin-left: 0em"><...<br/>
4221 <span style="margin-left: 0.5em"> type="<span class="type">
4222 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceType" type definition." href="#h1408823200">SequenceType</a>
4224 <span class="occurs">[0..1]</span>"</span>
4226 <span style="margin-left: 0.5em"> id_source="<span class="type">
4227 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
4229 <span class="occurs">[0..1]</span>"</span>
4231 <span style="margin-left: 0.5em"> id_ref="<span class="type">
4232 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
4234 <span class="occurs">[0..1]</span>"</span>> <br/>
4235 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:symbol> <span class="type">
4236 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceSymbol" type definition." href="#h935679102">SequenceSymbol</a>
4237 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:symbol> <span class="occurs">[0..1]</span>
4239 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession> <span class="type">
4240 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Accession" type definition." href="#h-788356801">Accession</a>
4241 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession> <span class="occurs">[0..1]</span>
4243 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="type">
4244 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name> <span class="occurs">[0..1]</span>
4246 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location> <span class="type">
4247 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location> <span class="occurs">[0..1]</span>
4249 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq> <span class="type">
4250 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "MolSeq" type definition." href="#h-213750342">MolSeq</a>
4251 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq> <span class="occurs">[0..1]</span>
4253 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="type">
4254 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
4255 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="occurs">[0..1]</span>
4257 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation> <span class="type">
4258 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Annotation" type definition." href="#h917087604">Annotation</a>
4259 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation> <span class="occurs">[0..*]</span>
4261 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture> <span class="type">
4262 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "DomainArchitecture" type definition." href="#h259010940">DomainArchitecture</a>
4263 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture> <span class="occurs">[0..1]</span>
4265 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
4266 </div></...></div>
4268 <script type="text/javascript">
4270 setState('h-1794244794_xibox', true);
4274 <div class="sample box">
4276 <input type="button" id="h-1794244794_diagram_button" class="control"
4277 onclick="switchState('h-1794244794_diagram'); return false;"
4278 style="display: none"/>
4279 <span class="caption">Diagram</span>
4281 <div id="h-1794244794_diagram" class="contents">
4282 <img usemap="#h1156064289" src="schemaDiagrams/h1156064289.png"/>
4284 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1156064289.map--><map name="h1156064289">
4285 <area shape="rect" alt="h935679102" coords="222,0,320,40"
4286 href="phyloxml.xsd.html#h935679102"/>
4288 <area shape="rect" alt="h-788356801" coords="222,50,341,90"
4289 href="phyloxml.xsd.html#h-788356801"/>
4291 <area shape="rect" alt="h-213750342" coords="222,200,327,240"
4292 href="phyloxml.xsd.html#h-213750342"/>
4294 <area shape="rect" alt="h-676012345" coords="222,250,299,290"
4295 href="phyloxml.xsd.html#h-676012345"/>
4297 <area shape="rect" alt="h917087604" coords="222,300,348,340"
4298 href="phyloxml.xsd.html#h917087604"/>
4300 <area shape="rect" alt="h259010940" coords="222,350,411,390"
4301 href="phyloxml.xsd.html#h259010940"/>
4303 <area shape="rect" alt="h1408823200" coords="136,451,238,477"
4304 href="phyloxml.xsd.html#h1408823200"/>
4306 <area shape="rect" alt="h-1482113798" coords="136,487,273,513"
4307 href="phyloxml.xsd.html#h-1482113798"/>
4309 <area shape="rect" alt="h577349652" coords="136,523,252,549"
4310 href="phyloxml.xsd.html#h577349652"/>
4314 <script type="text/javascript">
4316 setState('h-1794244794_diagram', true);
4320 <div class="schemaComponent box">
4322 <input type="button" id="h-1794244794_scbox_button" class="control"
4323 onclick="switchState('h-1794244794_scbox'); return false;"
4324 style="display: none"/>
4325 <span class="caption">Schema Component Representation</span>
4327 <div id="h-1794244794_scbox" class="contents">
4328 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
4329 <span class="scTag">name</span>="<span class="scContent">Sequence</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4330 <span class="scTag">name</span>="<span class="scContent">symbol</span>" <span class="scTag">type</span>="<span class="scContent">
4332 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceSymbol" type definition." href="#h935679102">SequenceSymbol</a>
4334 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4335 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4336 <span class="scTag">name</span>="<span class="scContent">accession</span>" <span class="scTag">type</span>="<span class="scContent">
4338 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Accession" type definition." href="#h-788356801">Accession</a>
4340 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4341 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4342 <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
4344 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4345 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4346 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4347 <span class="scTag">name</span>="<span class="scContent">location</span>" <span class="scTag">type</span>="<span class="scContent">
4349 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4350 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4351 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4352 <span class="scTag">name</span>="<span class="scContent">mol_seq</span>" <span class="scTag">type</span>="<span class="scContent">
4354 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "MolSeq" type definition." href="#h-213750342">MolSeq</a>
4356 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4357 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4358 <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
4360 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
4362 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4363 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4364 <span class="scTag">name</span>="<span class="scContent">annotation</span>" <span class="scTag">type</span>="<span class="scContent">
4366 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Annotation" type definition." href="#h917087604">Annotation</a>
4368 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
4369 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4370 <span class="scTag">name</span>="<span class="scContent">domain_architecture</span>" <span class="scTag">type</span>="<span class="scContent">
4372 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "DomainArchitecture" type definition." href="#h259010940">DomainArchitecture</a>
4374 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4375 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
4376 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
4377 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4378 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4380 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceType" type definition." href="#h1408823200">SequenceType</a>
4383 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4384 <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
4386 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
4389 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4390 <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
4392 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
4394 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
4396 <script type="text/javascript">
4398 setState('h-1794244794_scbox', false);
4402 <div style="text-align: right; clear: both;">
4403 <a href="#top">top</a>
4406 <h3>Complex Type: <a name="h-802965662" class="name">SequenceRelation</a>
4408 <table class="hierarchy">
4410 <th>Super-types:</th>
4418 <table class="properties">
4421 <td>SequenceRelation</td>
4424 <th>Used by (from the same schema document)</th>
4425 <td>Complex Type <b>
4426 <a href="#h535307528">Phylogeny</a>
4432 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4437 <th>Documentation</th>
4438 <td class="documentation"> This is used to express a typed relationship between two sequences. For example it could be
4439 used to describe an orthology (in which case attribute 'type' is 'orthology'). </td>
4442 <div class="sample box">
4444 <input type="button" id="h-802965662_xibox_button" class="control"
4445 onclick="switchState('h-802965662_xibox'); return false;"
4446 style="display: none"/>
4447 <span class="caption">XML Instance Representation</span>
4449 <div id="h-802965662_xibox" class="contents">
4450 <div style="margin-left: 0em"><...<br/>
4451 <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
4452 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
4454 <span class="occurs">[1]</span>"</span>
4456 <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
4457 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
4459 <span class="occurs">[1]</span>"</span>
4461 <span style="margin-left: 0.5em"> distance="<span class="type">
4462 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4463 <span class="occurs">[0..1]</span>"</span>
4465 <span style="margin-left: 0.5em"> type="<span class="type">
4466 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelationType" type definition." href="#h519911868">SequenceRelationType</a>
4468 <span class="occurs">[1]</span>"</span>> <br/>
4469 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="type">
4470 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
4471 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence> <span class="occurs">[0..1]</span>
4472 </div></...></div>
4474 <script type="text/javascript">
4476 setState('h-802965662_xibox', true);
4480 <div class="sample box">
4482 <input type="button" id="h-802965662_diagram_button" class="control"
4483 onclick="switchState('h-802965662_diagram'); return false;"
4484 style="display: none"/>
4485 <span class="caption">Diagram</span>
4487 <div id="h-802965662_diagram" class="contents">
4488 <img usemap="#h230020485" src="schemaDiagrams/h230020485.png"/>
4490 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h230020485.map--><map name="h230020485">
4491 <area shape="rect" alt="h-993584945" coords="278,0,404,40"
4492 href="phyloxml.xsd.html#h-993584945"/>
4494 <area shape="rect" alt="h577349652" coords="192,50,322,76"
4495 href="phyloxml.xsd.html#h577349652"/>
4497 <area shape="rect" alt="h577349652" coords="192,86,322,112"
4498 href="phyloxml.xsd.html#h577349652"/>
4500 <area shape="rect" alt="h519911868" coords="192,158,294,184"
4501 href="phyloxml.xsd.html#h519911868"/>
4505 <script type="text/javascript">
4507 setState('h-802965662_diagram', true);
4511 <div class="schemaComponent box">
4513 <input type="button" id="h-802965662_scbox_button" class="control"
4514 onclick="switchState('h-802965662_scbox'); return false;"
4515 style="display: none"/>
4516 <span class="caption">Schema Component Representation</span>
4518 <div id="h-802965662_scbox" class="contents">
4519 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
4520 <span class="scTag">name</span>="<span class="scContent">SequenceRelation</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4521 <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
4523 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Confidence" type definition." href="#h-993584945">Confidence</a>
4525 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div></<span class="scTag">xs:sequence</span>></div>
4526 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4527 <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
4529 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
4531 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
4532 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4533 <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
4535 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_ref" type definition." href="#h577349652">id_ref</a>
4537 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div>
4538 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4539 <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
4541 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4543 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4544 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4546 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "SequenceRelationType" type definition." href="#h519911868">SequenceRelationType</a>
4548 </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/></div></<span class="scTag">xs:complexType</span>></div>
4550 <script type="text/javascript">
4552 setState('h-802965662_scbox', false);
4556 <div style="text-align: right; clear: both;">
4557 <a href="#top">top</a>
4560 <h3>Complex Type: <a name="h888650454" class="name">Taxonomy</a>
4562 <table class="hierarchy">
4564 <th>Super-types:</th>
4572 <table class="properties">
4578 <th>Used by (from the same schema document)</th>
4579 <td>Complex Type <b>
4580 <a href="#h-1124608460">Clade</a>
4586 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4591 <th>Documentation</th>
4592 <td class="documentation"> Element Taxonomy is used to describe taxonomic information for a clade. Element 'code' is
4593 intended to store UniProt/Swiss-Prot style organism codes (e.g. 'APLCA' for the California sea hare 'Aplysia
4594 californica') or other styles of mnemonics (e.g. 'Aca'). Element 'authority' is used to keep the authority,
4595 such as 'J. G. Cooper, 1863', associated with the 'scientific_name'. Element 'id' is used for a unique
4596 identifier of a taxon (for example '6500' with 'ncbi_taxonomy' as 'provider' for the California sea hare).
4597 Attribute 'id_source' is used to link other elements to a taxonomy (on the xml-level).</td>
4600 <div class="sample box">
4602 <input type="button" id="h888650454_xibox_button" class="control"
4603 onclick="switchState('h888650454_xibox'); return false;"
4604 style="display: none"/>
4605 <span class="caption">XML Instance Representation</span>
4607 <div id="h888650454_xibox" class="contents">
4608 <div style="margin-left: 0em"><...<br/>
4609 <span style="margin-left: 0.5em"> id_source="<span class="type">
4610 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
4612 <span class="occurs">[0..1]</span>"</span>> <br/>
4613 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="type">
4614 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
4615 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id> <span class="occurs">[0..1]</span>
4617 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code> <span class="type">
4618 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "TaxonomyCode" type definition." href="#h712147427">TaxonomyCode</a>
4619 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code> <span class="occurs">[0..1]</span>
4621 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name> <span class="type">
4622 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name> <span class="occurs">[0..1]</span>
4624 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:authority> <span class="type">
4625 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:authority> <span class="occurs">[0..1]</span>
4627 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name> <span class="type">
4628 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name> <span class="occurs">[0..*]</span>
4630 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:synonym> <span class="type">
4631 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:synonym> <span class="occurs">[0..*]</span>
4633 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank> <span class="type">
4634 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Rank" type definition." href="#h518348337">Rank</a>
4635 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank> <span class="occurs">[0..1]</span>
4637 <div style="margin-left: 1.5em"><<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="type">
4638 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
4639 </span> </<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri> <span class="occurs">[0..1]</span>
4641 <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
4642 </div></...></div>
4644 <script type="text/javascript">
4646 setState('h888650454_xibox', true);
4650 <div class="sample box">
4652 <input type="button" id="h888650454_diagram_button" class="control"
4653 onclick="switchState('h888650454_diagram'); return false;"
4654 style="display: none"/>
4655 <span class="caption">Diagram</span>
4657 <div id="h888650454_diagram" class="contents">
4658 <img usemap="#h992625297" src="schemaDiagrams/h992625297.png"/>
4660 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h992625297.map--><map name="h992625297">
4661 <area shape="rect" alt="h-853091232" coords="222,0,298,40"
4662 href="phyloxml.xsd.html#h-853091232"/>
4664 <area shape="rect" alt="h712147427" coords="222,50,306,90"
4665 href="phyloxml.xsd.html#h712147427"/>
4667 <area shape="rect" alt="h518348337" coords="222,300,306,340"
4668 href="phyloxml.xsd.html#h518348337"/>
4670 <area shape="rect" alt="h-676012345" coords="222,350,299,390"
4671 href="phyloxml.xsd.html#h-676012345"/>
4673 <area shape="rect" alt="h-1482113798" coords="136,451,273,477"
4674 href="phyloxml.xsd.html#h-1482113798"/>
4678 <script type="text/javascript">
4680 setState('h888650454_diagram', true);
4684 <div class="schemaComponent box">
4686 <input type="button" id="h888650454_scbox_button" class="control"
4687 onclick="switchState('h888650454_scbox'); return false;"
4688 style="display: none"/>
4689 <span class="caption">Schema Component Representation</span>
4691 <div id="h888650454_scbox" class="contents">
4692 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
4693 <span class="scTag">name</span>="<span class="scContent">Taxonomy</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:sequence</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4694 <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
4696 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Id" type definition." href="#h-853091232">Id</a>
4698 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4699 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4700 <span class="scTag">name</span>="<span class="scContent">code</span>" <span class="scTag">type</span>="<span class="scContent">
4702 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "TaxonomyCode" type definition." href="#h712147427">TaxonomyCode</a>
4704 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4705 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4706 <span class="scTag">name</span>="<span class="scContent">scientific_name</span>" <span class="scTag">type</span>="<span class="scContent">
4708 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4709 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4710 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4711 <span class="scTag">name</span>="<span class="scContent">authority</span>" <span class="scTag">type</span>="<span class="scContent">
4713 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4714 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4715 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4716 <span class="scTag">name</span>="<span class="scContent">common_name</span>" <span class="scTag">type</span>="<span class="scContent">
4718 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4719 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
4720 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4721 <span class="scTag">name</span>="<span class="scContent">synonym</span>" <span class="scTag">type</span>="<span class="scContent">
4723 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4724 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/></div>
4725 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4726 <span class="scTag">name</span>="<span class="scContent">rank</span>" <span class="scTag">type</span>="<span class="scContent">
4728 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Rank" type definition." href="#h518348337">Rank</a>
4730 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4731 <div style="margin-left: 1.5em"><<span class="scTag">xs:element</span>
4732 <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
4734 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "Uri" type definition." href="#h-676012345">Uri</a>
4736 </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/></div>
4737 <div style="margin-left: 1.5em"><<span class="scTag">xs:any</span>
4738 <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/></div></<span class="scTag">xs:sequence</span>></div>
4739 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4740 <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
4742 <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to "id_source" type definition." href="#h-1482113798">id_source</a>
4744 </span>"/></div></<span class="scTag">xs:complexType</span>></div>
4746 <script type="text/javascript">
4748 setState('h888650454_scbox', false);
4752 <div style="text-align: right; clear: both;">
4753 <a href="#top">top</a>
4756 <h3>Complex Type: <a name="h-676012345" class="name">Uri</a>
4758 <table class="hierarchy">
4760 <th>Super-types:</th>
4763 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span> < <strong>Uri</strong> (by extension)</td>
4770 <table class="properties">
4776 <th>Used by (from the same schema document)</th>
4777 <td>Complex Type <b>
4778 <a href="#h888650454">Taxonomy</a>
4779 </b>, Complex Type <b>
4780 <a href="#h-1794244794">Sequence</a>
4781 </b>, Complex Type <b>
4782 <a href="#h917087604">Annotation</a>
4788 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4793 <th>Documentation</th>
4794 <td class="documentation"> A uniform resource identifier. In general, this is expected to be an URL (for example, to
4795 link to an image on a website, in which case the 'type' attribute might be 'image' and 'desc' might be
4796 'image of a California sea hare'). </td>
4799 <div class="sample box">
4801 <input type="button" id="h-676012345_xibox_button" class="control"
4802 onclick="switchState('h-676012345_xibox'); return false;"
4803 style="display: none"/>
4804 <span class="caption">XML Instance Representation</span>
4806 <div id="h-676012345_xibox" class="contents">
4807 <div style="margin-left: 0em"><...<br/>
4808 <span style="margin-left: 0.5em" class="newFields"> desc="<span class="type">
4809 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4810 <span class="occurs">[0..1]</span>"</span>
4812 <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
4813 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4814 <span class="occurs">[0..1]</span>"</span>> <br/>
4815 <span style="margin-left: 1.5em">
4817 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
4819 <br/></...></div>
4821 <script type="text/javascript">
4823 setState('h-676012345_xibox', true);
4827 <div class="sample box">
4829 <input type="button" id="h-676012345_diagram_button" class="control"
4830 onclick="switchState('h-676012345_diagram'); return false;"
4831 style="display: none"/>
4832 <span class="caption">Diagram</span>
4834 <div id="h-676012345_diagram" class="contents">
4835 <img usemap="#h-1930055872" src="schemaDiagrams/h-1930055872.png"/>
4837 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1930055872.map--><map name="h-1930055872">
4840 <script type="text/javascript">
4842 setState('h-676012345_diagram', true);
4846 <div class="schemaComponent box">
4848 <input type="button" id="h-676012345_scbox_button" class="control"
4849 onclick="switchState('h-676012345_scbox'); return false;"
4850 style="display: none"/>
4851 <span class="caption">Schema Component Representation</span>
4853 <div id="h-676012345_scbox" class="contents">
4854 <div style="margin-left: 0em"><<span class="scTag">xs:complexType</span>
4855 <span class="scTag">name</span>="<span class="scContent">Uri</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:simpleContent</span>><div style="margin-left: 1.5em"><<span class="scTag">xs:extension</span>
4856 <span class="scTag">base</span>="<span class="scContent">
4858 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
4859 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4860 <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
4862 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4864 <div style="margin-left: 1.5em"><<span class="scTag">xs:attribute</span>
4865 <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4867 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4868 </span>"/></div></<span class="scTag">xs:extension</span>></div></<span class="scTag">xs:simpleContent</span>></div></<span class="scTag">xs:complexType</span>></div>
4870 <script type="text/javascript">
4872 setState('h-676012345_scbox', false);
4876 <div style="text-align: right; clear: both;">
4877 <a href="#top">top</a>
4880 <h3>Simple Type: <a name="h-763252414" class="name">AppliesTo</a>
4882 <table class="hierarchy">
4884 <th>Super-types:</th>
4887 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>AppliesTo</strong> (by restriction)</td>
4894 <table class="properties">
4900 <th>Used by (from the same schema document)</th>
4901 <td>Complex Type <b>
4902 <a href="#h158033242">Property</a>
4910 <li>Base XSD Type: token</li>
4914 <em>value</em> comes from list: {'phylogeny'|'clade'|'node'|'annotation'|'parent_branch'|'other'}</li>
4919 <div class="sample box">
4921 <input type="button" id="h-763252414_diagram_button" class="control"
4922 onclick="switchState('h-763252414_diagram'); return false;"
4923 style="display: none"/>
4924 <span class="caption">Diagram</span>
4926 <div id="h-763252414_diagram" class="contents">
4927 <img usemap="#h-553597019" src="schemaDiagrams/h-553597019.png"/>
4929 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-553597019.map--><map name="h-553597019">
4932 <script type="text/javascript">
4934 setState('h-763252414_diagram', true);
4938 <div class="schemaComponent box">
4940 <input type="button" id="h-763252414_scbox_button" class="control"
4941 onclick="switchState('h-763252414_scbox'); return false;"
4942 style="display: none"/>
4943 <span class="caption">Schema Component Representation</span>
4945 <div id="h-763252414_scbox" class="contents">
4946 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
4947 <span class="scTag">name</span>="<span class="scContent">AppliesTo</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
4948 <span class="scTag">base</span>="<span class="scContent">
4950 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4951 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4952 <span class="scTag">value</span>="<span class="scContent">phylogeny</span>"/></div>
4953 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4954 <span class="scTag">value</span>="<span class="scContent">clade</span>"/></div>
4955 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4956 <span class="scTag">value</span>="<span class="scContent">node</span>"/></div>
4957 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4958 <span class="scTag">value</span>="<span class="scContent">annotation</span>"/></div>
4959 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4960 <span class="scTag">value</span>="<span class="scContent">parent_branch</span>"/></div>
4961 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
4962 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
4964 <script type="text/javascript">
4966 setState('h-763252414_scbox', false);
4970 <div style="text-align: right; clear: both;">
4971 <a href="#top">top</a>
4974 <h3>Simple Type: <a name="h1358103055" class="name">EventType</a>
4976 <table class="hierarchy">
4978 <th>Super-types:</th>
4981 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>EventType</strong> (by restriction)</td>
4988 <table class="properties">
4994 <th>Used by (from the same schema document)</th>
4995 <td>Complex Type <b>
4996 <a href="#h-436501026">Events</a>
5004 <li>Base XSD Type: token</li>
5008 <em>value</em> comes from list: {'transfer'|'fusion'|'speciation_or_duplication'|'other'|'mixed'|'unassigned'}</li>
5013 <div class="sample box">
5015 <input type="button" id="h1358103055_diagram_button" class="control"
5016 onclick="switchState('h1358103055_diagram'); return false;"
5017 style="display: none"/>
5018 <span class="caption">Diagram</span>
5020 <div id="h1358103055_diagram" class="contents">
5021 <img usemap="#h77064440" src="schemaDiagrams/h77064440.png"/>
5023 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h77064440.map--><map name="h77064440">
5026 <script type="text/javascript">
5028 setState('h1358103055_diagram', true);
5032 <div class="schemaComponent box">
5034 <input type="button" id="h1358103055_scbox_button" class="control"
5035 onclick="switchState('h1358103055_scbox'); return false;"
5036 style="display: none"/>
5037 <span class="caption">Schema Component Representation</span>
5039 <div id="h1358103055_scbox" class="contents">
5040 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5041 <span class="scTag">name</span>="<span class="scContent">EventType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5042 <span class="scTag">base</span>="<span class="scContent">
5044 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5045 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5046 <span class="scTag">value</span>="<span class="scContent">transfer</span>"/></div>
5047 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5048 <span class="scTag">value</span>="<span class="scContent">fusion</span>"/></div>
5049 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5050 <span class="scTag">value</span>="<span class="scContent">speciation_or_duplication</span>"/></div>
5051 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5052 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div>
5053 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5054 <span class="scTag">value</span>="<span class="scContent">mixed</span>"/></div>
5055 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5056 <span class="scTag">value</span>="<span class="scContent">unassigned</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5058 <script type="text/javascript">
5060 setState('h1358103055_scbox', false);
5064 <div style="text-align: right; clear: both;">
5065 <a href="#top">top</a>
5068 <h3>Simple Type: <a name="h-54338178" class="name">PropertyDataType</a>
5070 <table class="hierarchy">
5072 <th>Super-types:</th>
5075 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>PropertyDataType</strong> (by restriction)</td>
5082 <table class="properties">
5085 <td>PropertyDataType</td>
5088 <th>Used by (from the same schema document)</th>
5089 <td>Complex Type <b>
5090 <a href="#h158033242">Property</a>
5098 <li>Base XSD Type: token</li>
5102 <em>value</em> comes from list: {'xsd:string'|'xsd:boolean'|'xsd:decimal'|'xsd:float'|'xsd:double'|'xsd:duration'|'xsd:dateTime'|'xsd:time'|'xsd:date'|'xsd:gYearMonth'|'xsd:gYear'|'xsd:gMonthDay'|'xsd:gDay'|'xsd:gMonth'|'xsd:hexBinary'|'xsd:base64Binary'|'xsd:anyURI'|'xsd:normalizedString'|'xsd:token'|'xsd:integer'|'xsd:nonPositiveInteger'|'xsd:negativeInteger'|'xsd:long'|'xsd:int'|'xsd:short'|'xsd:byte'|'xsd:nonNegativeInteger'|'xsd:unsignedLong'|'xsd:unsignedInt'|'xsd:unsignedShort'|'xsd:unsignedByte'|'xsd:positiveInteger'}</li>
5107 <div class="sample box">
5109 <input type="button" id="h-54338178_diagram_button" class="control"
5110 onclick="switchState('h-54338178_diagram'); return false;"
5111 style="display: none"/>
5112 <span class="caption">Diagram</span>
5114 <div id="h-54338178_diagram" class="contents">
5115 <img usemap="#h-624240407" src="schemaDiagrams/h-624240407.png"/>
5117 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-624240407.map--><map name="h-624240407">
5120 <script type="text/javascript">
5122 setState('h-54338178_diagram', true);
5126 <div class="schemaComponent box">
5128 <input type="button" id="h-54338178_scbox_button" class="control"
5129 onclick="switchState('h-54338178_scbox'); return false;"
5130 style="display: none"/>
5131 <span class="caption">Schema Component Representation</span>
5133 <div id="h-54338178_scbox" class="contents">
5134 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5135 <span class="scTag">name</span>="<span class="scContent">PropertyDataType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5136 <span class="scTag">base</span>="<span class="scContent">
5138 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5139 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5140 <span class="scTag">value</span>="<span class="scContent">xsd:string</span>"/></div>
5141 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5142 <span class="scTag">value</span>="<span class="scContent">xsd:boolean</span>"/></div>
5143 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5144 <span class="scTag">value</span>="<span class="scContent">xsd:decimal</span>"/></div>
5145 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5146 <span class="scTag">value</span>="<span class="scContent">xsd:float</span>"/></div>
5147 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5148 <span class="scTag">value</span>="<span class="scContent">xsd:double</span>"/></div>
5149 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5150 <span class="scTag">value</span>="<span class="scContent">xsd:duration</span>"/></div>
5151 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5152 <span class="scTag">value</span>="<span class="scContent">xsd:dateTime</span>"/></div>
5153 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5154 <span class="scTag">value</span>="<span class="scContent">xsd:time</span>"/></div>
5155 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5156 <span class="scTag">value</span>="<span class="scContent">xsd:date</span>"/></div>
5157 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5158 <span class="scTag">value</span>="<span class="scContent">xsd:gYearMonth</span>"/></div>
5159 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5160 <span class="scTag">value</span>="<span class="scContent">xsd:gYear</span>"/></div>
5161 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5162 <span class="scTag">value</span>="<span class="scContent">xsd:gMonthDay</span>"/></div>
5163 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5164 <span class="scTag">value</span>="<span class="scContent">xsd:gDay</span>"/></div>
5165 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5166 <span class="scTag">value</span>="<span class="scContent">xsd:gMonth</span>"/></div>
5167 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5168 <span class="scTag">value</span>="<span class="scContent">xsd:hexBinary</span>"/></div>
5169 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5170 <span class="scTag">value</span>="<span class="scContent">xsd:base64Binary</span>"/></div>
5171 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5172 <span class="scTag">value</span>="<span class="scContent">xsd:anyURI</span>"/></div>
5173 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5174 <span class="scTag">value</span>="<span class="scContent">xsd:normalizedString</span>"/></div>
5175 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5176 <span class="scTag">value</span>="<span class="scContent">xsd:token</span>"/></div>
5177 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5178 <span class="scTag">value</span>="<span class="scContent">xsd:integer</span>"/></div>
5179 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5180 <span class="scTag">value</span>="<span class="scContent">xsd:nonPositiveInteger</span>"/></div>
5181 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5182 <span class="scTag">value</span>="<span class="scContent">xsd:negativeInteger</span>"/></div>
5183 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5184 <span class="scTag">value</span>="<span class="scContent">xsd:long</span>"/></div>
5185 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5186 <span class="scTag">value</span>="<span class="scContent">xsd:int</span>"/></div>
5187 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5188 <span class="scTag">value</span>="<span class="scContent">xsd:short</span>"/></div>
5189 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5190 <span class="scTag">value</span>="<span class="scContent">xsd:byte</span>"/></div>
5191 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5192 <span class="scTag">value</span>="<span class="scContent">xsd:nonNegativeInteger</span>"/></div>
5193 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5194 <span class="scTag">value</span>="<span class="scContent">xsd:unsignedLong</span>"/></div>
5195 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5196 <span class="scTag">value</span>="<span class="scContent">xsd:unsignedInt</span>"/></div>
5197 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5198 <span class="scTag">value</span>="<span class="scContent">xsd:unsignedShort</span>"/></div>
5199 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5200 <span class="scTag">value</span>="<span class="scContent">xsd:unsignedByte</span>"/></div>
5201 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5202 <span class="scTag">value</span>="<span class="scContent">xsd:positiveInteger</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5204 <script type="text/javascript">
5206 setState('h-54338178_scbox', false);
5210 <div style="text-align: right; clear: both;">
5211 <a href="#top">top</a>
5214 <h3>Simple Type: <a name="h518348337" class="name">Rank</a>
5216 <table class="hierarchy">
5218 <th>Super-types:</th>
5221 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>Rank</strong> (by restriction)</td>
5228 <table class="properties">
5234 <th>Used by (from the same schema document)</th>
5235 <td>Complex Type <b>
5236 <a href="#h888650454">Taxonomy</a>
5244 <li>Base XSD Type: token</li>
5248 <em>value</em> comes from list: {'domain'|'superkingdom'|'kingdom'|'subkingdom'|'branch'|'infrakingdom'|'superphylum'|'phylum'|'subphylum'|'infraphylum'|'microphylum'|'superdivision'|'division'|'subdivision'|'infradivision'|'superclass'|'class'|'subclass'|'infraclass'|'superlegion'|'legion'|'sublegion'|'infralegion'|'supercohort'|'cohort'|'subcohort'|'infracohort'|'superorder'|'order'|'suborder'|'superfamily'|'family'|'subfamily'|'supertribe'|'tribe'|'subtribe'|'infratribe'|'genus'|'subgenus'|'superspecies'|'species'|'subspecies'|'variety'|'subvariety'|'form'|'subform'|'cultivar'|'strain'|'unknown'|'other'}</li>
5253 <div class="sample box">
5255 <input type="button" id="h518348337_diagram_button" class="control"
5256 onclick="switchState('h518348337_diagram'); return false;"
5257 style="display: none"/>
5258 <span class="caption">Diagram</span>
5260 <div id="h518348337_diagram" class="contents">
5261 <img usemap="#h-1363552746" src="schemaDiagrams/h-1363552746.png"/>
5263 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1363552746.map--><map name="h-1363552746">
5266 <script type="text/javascript">
5268 setState('h518348337_diagram', true);
5272 <div class="schemaComponent box">
5274 <input type="button" id="h518348337_scbox_button" class="control"
5275 onclick="switchState('h518348337_scbox'); return false;"
5276 style="display: none"/>
5277 <span class="caption">Schema Component Representation</span>
5279 <div id="h518348337_scbox" class="contents">
5280 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5281 <span class="scTag">name</span>="<span class="scContent">Rank</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5282 <span class="scTag">base</span>="<span class="scContent">
5284 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5285 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5286 <span class="scTag">value</span>="<span class="scContent">domain</span>"/></div>
5287 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5288 <span class="scTag">value</span>="<span class="scContent">superkingdom</span>"/></div>
5289 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5290 <span class="scTag">value</span>="<span class="scContent">kingdom</span>"/></div>
5291 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5292 <span class="scTag">value</span>="<span class="scContent">subkingdom</span>"/></div>
5293 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5294 <span class="scTag">value</span>="<span class="scContent">branch</span>"/></div>
5295 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5296 <span class="scTag">value</span>="<span class="scContent">infrakingdom</span>"/></div>
5297 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5298 <span class="scTag">value</span>="<span class="scContent">superphylum</span>"/></div>
5299 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5300 <span class="scTag">value</span>="<span class="scContent">phylum</span>"/></div>
5301 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5302 <span class="scTag">value</span>="<span class="scContent">subphylum</span>"/></div>
5303 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5304 <span class="scTag">value</span>="<span class="scContent">infraphylum</span>"/></div>
5305 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5306 <span class="scTag">value</span>="<span class="scContent">microphylum</span>"/></div>
5307 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5308 <span class="scTag">value</span>="<span class="scContent">superdivision</span>"/></div>
5309 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5310 <span class="scTag">value</span>="<span class="scContent">division</span>"/></div>
5311 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5312 <span class="scTag">value</span>="<span class="scContent">subdivision</span>"/></div>
5313 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5314 <span class="scTag">value</span>="<span class="scContent">infradivision</span>"/></div>
5315 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5316 <span class="scTag">value</span>="<span class="scContent">superclass</span>"/></div>
5317 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5318 <span class="scTag">value</span>="<span class="scContent">class</span>"/></div>
5319 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5320 <span class="scTag">value</span>="<span class="scContent">subclass</span>"/></div>
5321 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5322 <span class="scTag">value</span>="<span class="scContent">infraclass</span>"/></div>
5323 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5324 <span class="scTag">value</span>="<span class="scContent">superlegion</span>"/></div>
5325 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5326 <span class="scTag">value</span>="<span class="scContent">legion</span>"/></div>
5327 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5328 <span class="scTag">value</span>="<span class="scContent">sublegion</span>"/></div>
5329 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5330 <span class="scTag">value</span>="<span class="scContent">infralegion</span>"/></div>
5331 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5332 <span class="scTag">value</span>="<span class="scContent">supercohort</span>"/></div>
5333 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5334 <span class="scTag">value</span>="<span class="scContent">cohort</span>"/></div>
5335 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5336 <span class="scTag">value</span>="<span class="scContent">subcohort</span>"/></div>
5337 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5338 <span class="scTag">value</span>="<span class="scContent">infracohort</span>"/></div>
5339 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5340 <span class="scTag">value</span>="<span class="scContent">superorder</span>"/></div>
5341 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5342 <span class="scTag">value</span>="<span class="scContent">order</span>"/></div>
5343 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5344 <span class="scTag">value</span>="<span class="scContent">suborder</span>"/></div>
5345 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5346 <span class="scTag">value</span>="<span class="scContent">superfamily</span>"/></div>
5347 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5348 <span class="scTag">value</span>="<span class="scContent">family</span>"/></div>
5349 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5350 <span class="scTag">value</span>="<span class="scContent">subfamily</span>"/></div>
5351 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5352 <span class="scTag">value</span>="<span class="scContent">supertribe</span>"/></div>
5353 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5354 <span class="scTag">value</span>="<span class="scContent">tribe</span>"/></div>
5355 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5356 <span class="scTag">value</span>="<span class="scContent">subtribe</span>"/></div>
5357 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5358 <span class="scTag">value</span>="<span class="scContent">infratribe</span>"/></div>
5359 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5360 <span class="scTag">value</span>="<span class="scContent">genus</span>"/></div>
5361 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5362 <span class="scTag">value</span>="<span class="scContent">subgenus</span>"/></div>
5363 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5364 <span class="scTag">value</span>="<span class="scContent">superspecies</span>"/></div>
5365 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5366 <span class="scTag">value</span>="<span class="scContent">species</span>"/></div>
5367 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5368 <span class="scTag">value</span>="<span class="scContent">subspecies</span>"/></div>
5369 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5370 <span class="scTag">value</span>="<span class="scContent">variety</span>"/></div>
5371 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5372 <span class="scTag">value</span>="<span class="scContent">subvariety</span>"/></div>
5373 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5374 <span class="scTag">value</span>="<span class="scContent">form</span>"/></div>
5375 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5376 <span class="scTag">value</span>="<span class="scContent">subform</span>"/></div>
5377 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5378 <span class="scTag">value</span>="<span class="scContent">cultivar</span>"/></div>
5379 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5380 <span class="scTag">value</span>="<span class="scContent">strain</span>"/></div>
5381 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5382 <span class="scTag">value</span>="<span class="scContent">unknown</span>"/></div>
5383 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5384 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5386 <script type="text/javascript">
5388 setState('h518348337_scbox', false);
5392 <div style="text-align: right; clear: both;">
5393 <a href="#top">top</a>
5396 <h3>Simple Type: <a name="h519911868" class="name">SequenceRelationType</a>
5398 <table class="hierarchy">
5400 <th>Super-types:</th>
5403 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>SequenceRelationType</strong> (by restriction)</td>
5410 <table class="properties">
5413 <td>SequenceRelationType</td>
5416 <th>Used by (from the same schema document)</th>
5417 <td>Complex Type <b>
5418 <a href="#h-802965662">SequenceRelation</a>
5426 <li>Base XSD Type: token</li>
5430 <em>value</em> comes from list: {'orthology'|'one_to_one_orthology'|'super_orthology'|'paralogy'|'ultra_paralogy'|'xenology'|'unknown'|'other'}</li>
5435 <div class="sample box">
5437 <input type="button" id="h519911868_diagram_button" class="control"
5438 onclick="switchState('h519911868_diagram'); return false;"
5439 style="display: none"/>
5440 <span class="caption">Diagram</span>
5442 <div id="h519911868_diagram" class="contents">
5443 <img usemap="#h-465227925" src="schemaDiagrams/h-465227925.png"/>
5445 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-465227925.map--><map name="h-465227925">
5448 <script type="text/javascript">
5450 setState('h519911868_diagram', true);
5454 <div class="schemaComponent box">
5456 <input type="button" id="h519911868_scbox_button" class="control"
5457 onclick="switchState('h519911868_scbox'); return false;"
5458 style="display: none"/>
5459 <span class="caption">Schema Component Representation</span>
5461 <div id="h519911868_scbox" class="contents">
5462 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5463 <span class="scTag">name</span>="<span class="scContent">SequenceRelationType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5464 <span class="scTag">base</span>="<span class="scContent">
5466 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5467 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5468 <span class="scTag">value</span>="<span class="scContent">orthology</span>"/></div>
5469 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5470 <span class="scTag">value</span>="<span class="scContent">one_to_one_orthology</span>"/></div>
5471 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5472 <span class="scTag">value</span>="<span class="scContent">super_orthology</span>"/></div>
5473 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5474 <span class="scTag">value</span>="<span class="scContent">paralogy</span>"/></div>
5475 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5476 <span class="scTag">value</span>="<span class="scContent">ultra_paralogy</span>"/></div>
5477 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5478 <span class="scTag">value</span>="<span class="scContent">xenology</span>"/></div>
5479 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5480 <span class="scTag">value</span>="<span class="scContent">unknown</span>"/></div>
5481 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5482 <span class="scTag">value</span>="<span class="scContent">other</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5484 <script type="text/javascript">
5486 setState('h519911868_scbox', false);
5490 <div style="text-align: right; clear: both;">
5491 <a href="#top">top</a>
5494 <h3>Simple Type: <a name="h935679102" class="name">SequenceSymbol</a>
5496 <table class="hierarchy">
5498 <th>Super-types:</th>
5501 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>SequenceSymbol</strong> (by restriction)</td>
5508 <table class="properties">
5511 <td>SequenceSymbol</td>
5514 <th>Used by (from the same schema document)</th>
5515 <td>Complex Type <b>
5516 <a href="#h-1794244794">Sequence</a>
5524 <li>Base XSD Type: token</li>
5528 <em>pattern</em> = \S{1,20}</li>
5533 <div class="sample box">
5535 <input type="button" id="h935679102_diagram_button" class="control"
5536 onclick="switchState('h935679102_diagram'); return false;"
5537 style="display: none"/>
5538 <span class="caption">Diagram</span>
5540 <div id="h935679102_diagram" class="contents">
5541 <img usemap="#h516473321" src="schemaDiagrams/h516473321.png"/>
5543 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h516473321.map--><map name="h516473321">
5546 <script type="text/javascript">
5548 setState('h935679102_diagram', true);
5552 <div class="schemaComponent box">
5554 <input type="button" id="h935679102_scbox_button" class="control"
5555 onclick="switchState('h935679102_scbox'); return false;"
5556 style="display: none"/>
5557 <span class="caption">Schema Component Representation</span>
5559 <div id="h935679102_scbox" class="contents">
5560 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5561 <span class="scTag">name</span>="<span class="scContent">SequenceSymbol</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5562 <span class="scTag">base</span>="<span class="scContent">
5564 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5565 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:pattern</span>
5566 <span class="scTag">value</span>="<span class="scContent">\S{1,20}</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5568 <script type="text/javascript">
5570 setState('h935679102_scbox', false);
5574 <div style="text-align: right; clear: both;">
5575 <a href="#top">top</a>
5578 <h3>Simple Type: <a name="h1408823200" class="name">SequenceType</a>
5580 <table class="hierarchy">
5582 <th>Super-types:</th>
5585 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>SequenceType</strong> (by restriction)</td>
5592 <table class="properties">
5595 <td>SequenceType</td>
5598 <th>Used by (from the same schema document)</th>
5599 <td>Complex Type <b>
5600 <a href="#h-1794244794">Sequence</a>
5608 <li>Base XSD Type: token</li>
5612 <em>value</em> comes from list: {'rna'|'dna'|'protein'}</li>
5617 <div class="sample box">
5619 <input type="button" id="h1408823200_diagram_button" class="control"
5620 onclick="switchState('h1408823200_diagram'); return false;"
5621 style="display: none"/>
5622 <span class="caption">Diagram</span>
5624 <div id="h1408823200_diagram" class="contents">
5625 <img usemap="#h-2043228153" src="schemaDiagrams/h-2043228153.png"/>
5627 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-2043228153.map--><map name="h-2043228153">
5630 <script type="text/javascript">
5632 setState('h1408823200_diagram', true);
5636 <div class="schemaComponent box">
5638 <input type="button" id="h1408823200_scbox_button" class="control"
5639 onclick="switchState('h1408823200_scbox'); return false;"
5640 style="display: none"/>
5641 <span class="caption">Schema Component Representation</span>
5643 <div id="h1408823200_scbox" class="contents">
5644 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5645 <span class="scTag">name</span>="<span class="scContent">SequenceType</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5646 <span class="scTag">base</span>="<span class="scContent">
5648 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5649 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5650 <span class="scTag">value</span>="<span class="scContent">rna</span>"/></div>
5651 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5652 <span class="scTag">value</span>="<span class="scContent">dna</span>"/></div>
5653 <div style="margin-left: 1.5em"><<span class="scTag">xs:enumeration</span>
5654 <span class="scTag">value</span>="<span class="scContent">protein</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5656 <script type="text/javascript">
5658 setState('h1408823200_scbox', false);
5662 <div style="text-align: right; clear: both;">
5663 <a href="#top">top</a>
5666 <h3>Simple Type: <a name="h712147427" class="name">TaxonomyCode</a>
5668 <table class="hierarchy">
5670 <th>Super-types:</th>
5673 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>TaxonomyCode</strong> (by restriction)</td>
5680 <table class="properties">
5683 <td>TaxonomyCode</td>
5686 <th>Used by (from the same schema document)</th>
5687 <td>Complex Type <b>
5688 <a href="#h888650454">Taxonomy</a>
5696 <li>Base XSD Type: token</li>
5700 <em>pattern</em> = [a-zA-Z0-9_]{2,10}</li>
5705 <div class="sample box">
5707 <input type="button" id="h712147427_diagram_button" class="control"
5708 onclick="switchState('h712147427_diagram'); return false;"
5709 style="display: none"/>
5710 <span class="caption">Diagram</span>
5712 <div id="h712147427_diagram" class="contents">
5713 <img usemap="#h516707748" src="schemaDiagrams/h516707748.png"/>
5715 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h516707748.map--><map name="h516707748">
5718 <script type="text/javascript">
5720 setState('h712147427_diagram', true);
5724 <div class="schemaComponent box">
5726 <input type="button" id="h712147427_scbox_button" class="control"
5727 onclick="switchState('h712147427_scbox'); return false;"
5728 style="display: none"/>
5729 <span class="caption">Schema Component Representation</span>
5731 <div id="h712147427_scbox" class="contents">
5732 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5733 <span class="scTag">name</span>="<span class="scContent">TaxonomyCode</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5734 <span class="scTag">base</span>="<span class="scContent">
5736 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5737 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:pattern</span>
5738 <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]{2,10}</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
5740 <script type="text/javascript">
5742 setState('h712147427_scbox', false);
5746 <div style="text-align: right; clear: both;">
5747 <a href="#top">top</a>
5750 <h3>Simple Type: <a name="h577349652" class="name">id_ref</a>
5752 <table class="hierarchy">
5754 <th>Super-types:</th>
5757 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span> < <strong>id_ref</strong> (by restriction)</td>
5764 <table class="properties">
5770 <th>Used by (from the same schema document)</th>
5771 <td>Complex Type <b>
5772 <a href="#h-1794244794">Sequence</a>
5773 </b>, Complex Type <b>
5774 <a href="#h158033242">Property</a>
5775 </b>, Complex Type <b>
5776 <a href="#h-802965662">SequenceRelation</a>
5777 </b>, Complex Type <b>
5778 <a href="#h-802965662">SequenceRelation</a>
5779 </b>, Complex Type <b>
5780 <a href="#h192331856">CladeRelation</a>
5781 </b>, Complex Type <b>
5782 <a href="#h192331856">CladeRelation</a>
5790 <li>Base XSD Type: IDREF</li>
5795 <div class="sample box">
5797 <input type="button" id="h577349652_diagram_button" class="control"
5798 onclick="switchState('h577349652_diagram'); return false;"
5799 style="display: none"/>
5800 <span class="caption">Diagram</span>
5802 <div id="h577349652_diagram" class="contents">
5803 <img usemap="#h813803539" src="schemaDiagrams/h813803539.png"/>
5805 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h813803539.map--><map name="h813803539">
5808 <script type="text/javascript">
5810 setState('h577349652_diagram', true);
5814 <div class="schemaComponent box">
5816 <input type="button" id="h577349652_scbox_button" class="control"
5817 onclick="switchState('h577349652_scbox'); return false;"
5818 style="display: none"/>
5819 <span class="caption">Schema Component Representation</span>
5821 <div id="h577349652_scbox" class="contents">
5822 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5823 <span class="scTag">name</span>="<span class="scContent">id_ref</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5824 <span class="scTag">base</span>="<span class="scContent">
5826 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span>
5827 </span>"/></div></<span class="scTag">xs:simpleType</span>></div>
5829 <script type="text/javascript">
5831 setState('h577349652_scbox', false);
5835 <div style="text-align: right; clear: both;">
5836 <a href="#top">top</a>
5839 <h3>Simple Type: <a name="h-1482113798" class="name">id_source</a>
5841 <table class="hierarchy">
5843 <th>Super-types:</th>
5846 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span> < <strong>id_source</strong> (by restriction)</td>
5853 <table class="properties">
5859 <th>Used by (from the same schema document)</th>
5860 <td>Complex Type <b>
5861 <a href="#h-1124608460">Clade</a>
5862 </b>, Complex Type <b>
5863 <a href="#h888650454">Taxonomy</a>
5864 </b>, Complex Type <b>
5865 <a href="#h-1794244794">Sequence</a>
5873 <li>Base XSD Type: ID</li>
5878 <div class="sample box">
5880 <input type="button" id="h-1482113798_diagram_button" class="control"
5881 onclick="switchState('h-1482113798_diagram'); return false;"
5882 style="display: none"/>
5883 <span class="caption">Diagram</span>
5885 <div id="h-1482113798_diagram" class="contents">
5886 <img usemap="#h123518701" src="schemaDiagrams/h123518701.png"/>
5888 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h123518701.map--><map name="h123518701">
5891 <script type="text/javascript">
5893 setState('h-1482113798_diagram', true);
5897 <div class="schemaComponent box">
5899 <input type="button" id="h-1482113798_scbox_button" class="control"
5900 onclick="switchState('h-1482113798_scbox'); return false;"
5901 style="display: none"/>
5902 <span class="caption">Schema Component Representation</span>
5904 <div id="h-1482113798_scbox" class="contents">
5905 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5906 <span class="scTag">name</span>="<span class="scContent">id_source</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5907 <span class="scTag">base</span>="<span class="scContent">
5909 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span>
5910 </span>"/></div></<span class="scTag">xs:simpleType</span>></div>
5912 <script type="text/javascript">
5914 setState('h-1482113798_scbox', false);
5918 <div style="text-align: right; clear: both;">
5919 <a href="#top">top</a>
5922 <h3>Simple Type: <a name="h-675984882" class="name">ref</a>
5924 <table class="hierarchy">
5926 <th>Super-types:</th>
5929 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> < <strong>ref</strong> (by restriction)</td>
5936 <table class="properties">
5942 <th>Used by (from the same schema document)</th>
5943 <td>Complex Type <b>
5944 <a href="#h917087604">Annotation</a>
5945 </b>, Complex Type <b>
5946 <a href="#h158033242">Property</a>
5947 </b>, Complex Type <b>
5948 <a href="#h158033242">Property</a>
5956 <li>Base XSD Type: token</li>
5960 <em>pattern</em> = [a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+</li>
5965 <div class="sample box">
5967 <input type="button" id="h-675984882_diagram_button" class="control"
5968 onclick="switchState('h-675984882_diagram'); return false;"
5969 style="display: none"/>
5970 <span class="caption">Diagram</span>
5972 <div id="h-675984882_diagram" class="contents">
5973 <img usemap="#h-1056119207" src="schemaDiagrams/h-1056119207.png"/>
5975 Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1056119207.map--><map name="h-1056119207">
5978 <script type="text/javascript">
5980 setState('h-675984882_diagram', true);
5984 <div class="schemaComponent box">
5986 <input type="button" id="h-675984882_scbox_button" class="control"
5987 onclick="switchState('h-675984882_scbox'); return false;"
5988 style="display: none"/>
5989 <span class="caption">Schema Component Representation</span>
5991 <div id="h-675984882_scbox" class="contents">
5992 <div style="margin-left: 0em"><<span class="scTag">xs:simpleType</span>
5993 <span class="scTag">name</span>="<span class="scContent">ref</span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:restriction</span>
5994 <span class="scTag">base</span>="<span class="scContent">
5996 <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5997 </span>"><div style="margin-left: 1.5em"><<span class="scTag">xs:pattern</span>
5998 <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+</span>"/></div></<span class="scTag">xs:restriction</span>></div></<span class="scTag">xs:simpleType</span>></div>
6000 <script type="text/javascript">
6002 setState('h-675984882_scbox', false);
6006 <div style="text-align: right; clear: both;">
6007 <a href="#top">top</a>
6012 <a name="Legend">Legend</a>
6014 <div style="float: left; width: 15em;">
6015 <h3 style="margin-bottom: 0px;">Complex Type:</h3>
6016 <div class="hint" style="margin-left: 0em;">Schema Component Type</div>
6018 <div style="float: left; width: 15em;">
6019 <h3 style="margin-bottom: 0px;">
6020 <span class="name">AusAddress</span>
6022 <div class="hint" style="margin-left: 0em;">Schema Component Name</div>
6024 <table class="hierarchy" style="clear : both">
6026 <th>Super-types:</th>
6028 <span class="type" style="color: #0000FF; text-decoration:underline;">Address</span> < <span class="current">AusAddress</span> (by extension)</td>
6035 <span class="type" style="color: #0000FF; text-decoration:underline;">QLDAddress</span> (by restriction)</li>
6040 <div class="hint">If this schema component is a type definition, its type hierarchy is shown in a gray-bordered box.</div>
6041 <table class="properties">
6048 <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
6053 <div class="hint">The table above displays the properties of this schema component.</div>
6054 <div class="sample box">
6056 <span class="caption">XML Instance Representation</span>
6058 <div class="contents">
6059 <span style="margin-left: 0em"><...</span>
6060 <span class="newFields">
6061 <span> country="<span class="fixed">Australia</span>"</span>
6063 <span style="margin-left: 1.5em" class="inherited"><unitNo> <span class="type">string</span> </unitNo> <span class="occurs">[0..1]</span>
6066 <span style="margin-left: 1.5em" class="inherited"><houseNo> <span class="type">string</span> </houseNo> <span class="occurs">[1]</span>
6069 <span style="margin-left: 1.5em" class="inherited"><street> <span class="type">string</span> </street> <span class="occurs">[1]</span>
6072 <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Choice' in glossary" href="#term_Choice">Choice</a>
6073 <span class="occurs">[1]</span>
6076 <span style="margin-left: 3em" class="inherited"><city> <span class="type">string</span> </city> <span class="occurs">[1]</span>
6079 <span style="margin-left: 3em" class="inherited"><town> <span class="type">string</span> </town> <span class="occurs">[1]</span>
6082 <span class="group" style="margin-left: 1.5em">End Choice</span>
6084 <span class="newFields">
6085 <span style="margin-left: 1.5em"><state> <span class="type" style="text-decoration:underline;">AusStates</span> </state> <span class="occurs">[1]</span>
6088 <span style="margin-left: 1.5em"><postcode> <span class="constraint">string <<<em>pattern</em> = [1-9][0-9]{3}>></span> </postcode> <span class="occurs">[1]</span>
6089 <a href="javascript:void(0)" title="View Documentation" class="documentation"
6090 onclick="docArray = new Array('Post code must be a four-digit number.'); viewDocumentation('Element', 'postcode', docArray);">?</a>
6094 <span style="margin-left: 0em"></...></span>
6099 <p>The XML Instance Representation table above shows the schema component's content as an XML instance.</p>
6101 <li>The minimum and maximum occurrence of elements and attributes are provided in square brackets, e.g. [0..1].</li>
6102 <li>Model group information are shown in gray, e.g. Start Choice ... End Choice.</li>
6103 <li>For type derivations, the elements and attributes that have been added to or changed from the base type's content are shown in <span style="font-weight: bold">bold</span>.</li>
6104 <li>If an element/attribute has a fixed value, the fixed value is shown in green, e.g. country="Australia".</li>
6105 <li>Otherwise, the type of the element/attribute is displayed.
6107 <li>If the element/attribute's type is in the schema, a link is provided to it.</li>
6108 <li>For local simple type definitions, the constraints are displayed in angle brackets, e.g. <<<em>pattern</em> = [1-9][0-9]{3}>>.</li>
6111 <li>If a local element/attribute has documentation, it will be displayed in a window that pops up when the question mark inside the attribute or next to the element is clicked, e.g. <postcode>.</li>
6114 <div class="schemaComponent box">
6116 <span class="caption">Schema Component Representation</span>
6118 <div class="contents">
6119 <span style="margin-left: 0em"><<span class="scTag">complexType</span>
6120 <span class="scTag">name</span>="<span class="scContent">AusAddress</span>"></span>
6122 <span style="margin-left: 1.5em"><<span class="scTag">complexContent</span>></span>
6124 <span style="margin-left: 3em"><<span class="scTag">extension</span>
6125 <span class="scTag">base</span>="<span class="scContent">
6126 <span class="type" style="text-decoration:underline;">Address</span>
6129 <span style="margin-left: 4.5em"><<span class="scTag">sequence</span>></span>
6131 <span style="margin-left: 6em"><<span class="scTag">element</span>
6132 <span class="scTag">name</span>="<span class="scContent">state</span>" <span class="scTag">type</span>="<span class="scContent">
6133 <span class="type" style="text-decoration:underline;">AusStates</span>
6134 </span>"/></span>
6136 <span style="margin-left: 6em"><<span class="scTag">element</span>
6137 <span class="scTag">name</span>="<span class="scContent">postcode</span>"></span>
6139 <span style="margin-left: 7.5em"><<span class="scTag">simpleType</span>></span>
6141 <span style="margin-left: 9em"><<span class="scTag">restriction</span>
6142 <span class="scTag">base</span>="<span class="scContent">
6143 <span class="type">string</span>
6146 <span style="margin-left: 10.5em"><<span class="scTag">pattern</span>
6147 <span class="scTag">value</span>="<span class="scContent">[1-9][0-9]{3}</span>"/></span>
6149 <span style="margin-left: 9em"></<span class="scTag">restriction</span>></span>
6151 <span style="margin-left: 7.5em"></<span class="scTag">simpleType</span>></span>
6153 <span style="margin-left: 6em"></<span class="scTag">element</span>></span>
6155 <span style="margin-left: 4.5em"></<span class="scTag">sequence</span>></span>
6157 <span style="margin-left: 4.5em"><<span class="scTag">attribute</span>
6158 <span class="scTag">name</span>="<span class="scContent">country</span>" <span class="scTag">type</span>="<span class="scContent">
6159 <span class="type">string</span>
6160 </span>" <span class="scTag">fixed</span>="<span class="scContent">Australia</span>"/></span>
6162 <span style="margin-left: 3em"></<span class="scTag">extension</span>></span>
6164 <span style="margin-left: 1.5em"></<span class="scTag">complexContent</span>></span>
6166 <span style="margin-left: 0em"></<span class="scTag">complexType</span>></span>
6170 <div class="hint">The Schema Component Representation table above displays the underlying XML representation of the schema component. (Annotations are not shown.)</div>
6171 <div style="text-align: right; clear: both;">
6172 <a href="#top">top</a>
6178 <a name="Glossary">Glossary</a>
6181 <span class="glossaryTerm">
6182 <a name="term_Abstract">Abstract</a>
6183 </span>(Applies to complex type definitions and element declarations). An abstract element or complex type cannot used to validate an element instance. If there is a reference to an abstract element, only element declarations that can substitute the abstract element can be used to validate the instance. For references to abstract type definitions, only derived types can be used.</p>
6185 <span class="glossaryTerm">
6186 <a name="term_All">All Model Group</a>
6187 </span>Child elements can be provided <em>in any order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-all"
6188 href="http://www.w3.org/TR/xmlschema-1/#element-all">http://www.w3.org/TR/xmlschema-1/#element-all</a>.</p>
6190 <span class="glossaryTerm">
6191 <a name="term_Choice">Choice Model Group</a>
6193 <em>Only one</em> from the list of child elements and model groups can be provided in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-choice"
6194 href="http://www.w3.org/TR/xmlschema-1/#element-choice">http://www.w3.org/TR/xmlschema-1/#element-choice</a>.</p>
6196 <span class="glossaryTerm">
6197 <a name="term_CollapseWS">Collapse Whitespace Policy</a>
6198 </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32). Then, collapse contiguous sequences of space characters into single space character, and remove leading and trailing space characters.</p>
6200 <span class="glossaryTerm">
6201 <a name="term_ElemBlock">Disallowed Substitutions</a>
6202 </span>(Applies to element declarations). If <em>substitution</em> is specified, then <a title="Look up 'substitution group' in glossary"
6203 href="phyloxml.xsd.html#term_SubGroup">substitution group</a> members cannot be used in place of the given element declaration to validate element instances. If <em>derivation methods</em>, e.g. extension, restriction, are specified, then the given element declaration will not validate element instances that have types derived from the element declaration's type using the specified derivation methods. Normally, element instances can override their declaration's type by specifying an <code>xsi:type</code> attribute.</p>
6205 <span class="glossaryTerm">
6206 <a name="term_Key">Key Constraint</a>
6207 </span>Like <a title="Look up 'Uniqueness Constraint' in glossary"
6208 href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>, but additionally requires that the specified value(s) must be provided. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6209 href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6211 <span class="glossaryTerm">
6212 <a name="term_KeyRef">Key Reference Constraint</a>
6213 </span>Ensures that the specified value(s) must match value(s) from a <a title="Look up 'Key Constraint' in glossary" href="phyloxml.xsd.html#term_Key">Key Constraint</a> or <a title="Look up 'Uniqueness Constraint' in glossary"
6214 href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6215 href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6217 <span class="glossaryTerm">
6218 <a name="term_ModelGroup">Model Group</a>
6219 </span>Groups together element content, specifying the order in which the element content can occur and the number of times the group of element content may be repeated. See: <a title="http://www.w3.org/TR/xmlschema-1/#Model_Groups"
6220 href="http://www.w3.org/TR/xmlschema-1/#Model_Groups">http://www.w3.org/TR/xmlschema-1/#Model_Groups</a>.</p>
6222 <span class="glossaryTerm">
6223 <a name="term_Nillable">Nillable</a>
6224 </span>(Applies to element declarations). If an element declaration is nillable, instances can use the <code>xsi:nil</code> attribute. The <code>xsi:nil</code> attribute is the boolean attribute, <em>nil</em>, from the <em>http://www.w3.org/2001/XMLSchema-instance</em> namespace. If an element instance has an <code>xsi:nil</code> attribute set to true, it can be left empty, even though its element declaration may have required content.</p>
6226 <span class="glossaryTerm">
6227 <a name="term_Notation">Notation</a>
6228 </span>A notation is used to identify the format of a piece of data. Values of elements and attributes that are of type, NOTATION, must come from the names of declared notations. See: <a title="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations"
6229 href="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations">http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations</a>.</p>
6231 <span class="glossaryTerm">
6232 <a name="term_PreserveWS">Preserve Whitespace Policy</a>
6233 </span>Preserve whitespaces exactly as they appear in instances.</p>
6235 <span class="glossaryTerm">
6236 <a name="term_TypeFinal">Prohibited Derivations</a>
6237 </span>(Applies to type definitions). Derivation methods that cannot be used to create sub-types from a given type definition.</p>
6239 <span class="glossaryTerm">
6240 <a name="term_TypeBlock">Prohibited Substitutions</a>
6241 </span>(Applies to complex type definitions). Prevents sub-types that have been derived using the specified derivation methods from validating element instances in place of the given type definition.</p>
6243 <span class="glossaryTerm">
6244 <a name="term_ReplaceWS">Replace Whitespace Policy</a>
6245 </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32).</p>
6247 <span class="glossaryTerm">
6248 <a name="term_Sequence">Sequence Model Group</a>
6249 </span>Child elements and model groups must be provided <em>in the specified order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-sequence"
6250 href="http://www.w3.org/TR/xmlschema-1/#element-sequence">http://www.w3.org/TR/xmlschema-1/#element-sequence</a>.</p>
6252 <span class="glossaryTerm">
6253 <a name="term_SubGroup">Substitution Group</a>
6254 </span>Elements that are <em>members</em> of a substitution group can be used wherever the <em>head</em> element of the substitution group is referenced.</p>
6256 <span class="glossaryTerm">
6257 <a name="term_ElemFinal">Substitution Group Exclusions</a>
6258 </span>(Applies to element declarations). Prohibits element declarations from nominating themselves as being able to substitute a given element declaration, if they have types that are derived from the original element's type using the specified derivation methods.</p>
6260 <span class="glossaryTerm">
6261 <a name="term_TargetNS">Target Namespace</a>
6262 </span>The target namespace identifies the namespace that components in this schema belongs to. If no target namespace is provided, then the schema components do not belong to any namespace.</p>
6264 <span class="glossaryTerm">
6265 <a name="term_Unique">Uniqueness Constraint</a>
6266 </span>Ensures uniqueness of an element/attribute value, or a combination of values, within a specified scope. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6267 href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6268 <div style="text-align: right; clear: both;">
6269 <a href="#top">top</a>
6273 <p class="footer">Generated by <a href="http://www.oxygenxml.com"><oXygen/> XML Editor</a> using a modified version of <a href="http://titanium.dstc.edu.au/xml/xs3p">xs3p</a> that adds schema diagrams and chunking support. Last modified: <script type="text/javascript">
6275 document.write(document.lastModified);