forester/phyloxml/docs/version_1.10/phyloxml.xsd.html

   1
   2 <!DOCTYPE html
   3   PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
   4 <html xmlns="http://www.w3.org/1999/xhtml">
   5    <head>
   6       <title>phyloXML 1.10 - phyloxml.xsd</title>
   7       <meta http-equiv="Content-Type" content="text/xml; charset=UTF-8"/>
   8       <style type="text/css">
   9 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
  10 /* More-configurable styles */
  11
  12 /******** General ********/
  13
  14 /* Document body */
  15 body {
  16    color: Black;
  17    background-color: White;
  18    font-family: Arial, sans-serif;
  19    font-size: 10pt;
  20 }
  21
  22 /* Horizontal rules */
  23 hr {
  24    color: black;
  25 }
  26 /* Document title */
  27 h1 {
  28    font-size: 18pt;
  29    letter-spacing: 2px;
  30    border-bottom: 1px #ccc solid;
  31    padding-top: 5px;
  32    padding-bottom: 5px;
  33 }
  34 /* Main section headers */
  35 h2 {
  36    font-size: 14pt;
  37    letter-spacing: 1px;
  38 }
  39 /* Sub-section headers */
  40 h3, h3 a, h3 span {
  41    font-size: 12pt;
  42    font-weight: bold;
  43    color: black;
  44 }
  45 /* Table displaying the properties of the schema components or the
  46    schema document itself */
  47 table.properties th, table.properties th a {
  48    color: black;
  49    background-color: #F99; /* Pink */
  50 }
  51 table.properties td {
  52    background-color: #eee; /* Gray */
  53 }
  54
  55 img{
  56  border: 0;
  57 }
  58
  59 /********* Documentation style *************/
  60 p.documentation {
  61    color:black;
  62    font-style:italic;
  63          background-color: #EEEEFF;
  64          border: 1px solid #DDDDFF;
  65          padding-top: 1px;
  66          margin-right: 30px;
  67          margin-top: 1px;
  68 }
  69
  70
  71 /******** Table of Contents Section ********/
  72
  73 /* Controls for switching between printing and viewing modes */
  74 div#printerControls {
  75    color: #963; /* Orange-brown */
  76 }
  77 /* Controls that can collapse or expand all XML Instance
  78    Representation and Schema Component Representation boxes */
  79 div#globalControls {
  80    border: 2px solid #999;
  81 }
  82
  83
  84 /******** Schema Document Properties Section ********/
  85
  86 /* Table displaying the namespaces declared in the schema */
  87 table.namespaces th {
  88    background-color: #ccc;
  89 }
  90 table.namespaces td {
  91    background-color: #eee;
  92 }
  93 /* Target namespace of the schema */
  94 span.targetNS {
  95    color: #06C;
  96    font-weight: bold;
  97 }
  98
  99
 100 /******** Schema Components' Sections ********/
 101
 102 /* Name of schema component */
 103 .name {
 104    color: #F93; /* Orange */
 105 }
 106
 107 /* Hierarchy table */
 108 table.hierarchy {
 109    border: 2px solid #999; /* Gray */
 110 }
 111
 112 /* XML Instance Representation table */
 113 div.sample div.contents {
 114    border: 1px dashed black;
 115 }
 116
 117
 118 /* Schema Component Representation table */
 119 div.schemaComponent div.contents {
 120    border: 2px black solid;
 121 }
 122
 123
 124 /******** Glossary Section ********/
 125
 126 /* Glossary Terms */
 127 .glossaryTerm {
 128    color: #036; /* Blue */
 129 }
 130
 131
 132 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
 133 /* Printer-version styles */
 134
 135 @media print {
 136
 137 /* Ensures that controls are hidden when printing */
 138 div#printerControls {
 139    visibility: hidden;
 140 }
 141 div#globalControls {
 142    visibility: hidden;
 143 }
 144 #legend {
 145    display: none;
 146 }
 147 #legendTOC {
 148    display: none;
 149 }
 150 #glossary {
 151    display: none;
 152 }
 153 #glossaryTOC {
 154    display: none;
 155 }
 156
 157 }
 158
 159 /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ */
 160 /* Base styles */
 161
 162 /******** General ********/
 163
 164 /* Unordered lists */
 165 ul {
 166    margin-left: 1.5em;
 167    margin-bottom: 0em;
 168 }
 169 /* Tables */
 170 table {
 171    margin-top: 10px;
 172    margin-bottom: 10px;
 173    margin-left: 2px;
 174    margin-right: 2px;
 175 }
 176 table th, table td {
 177    font-size: 10pt;
 178    vertical-align: top;
 179    padding-top: 3px;
 180    padding-bottom: 3px;
 181    padding-left: 10px;
 182    padding-right: 10px;
 183 }
 184 table th {
 185    font-weight: bold;
 186    text-align: left;
 187 }
 188 /* Table displaying the properties of the schema components or the
 189    schema document itself */
 190 table.properties {
 191    width: 90%;
 192 }
 193 table.properties th {
 194    width: 30%;
 195 }
 196 /* Boxes that can make its content appear and disappear*/
 197 div.box {
 198    margin: 1em;
 199 }
 200    /* Box caption */
 201 div.box span.caption {
 202    font-weight: bold;
 203 }
 204    /* Button to open and close the box */
 205 div.box input.control {
 206    width: 1.4em;
 207    height: 1.4em;
 208    text-align: center;
 209    vertical-align: middle;
 210    font-size: 11pt;
 211 }
 212    /* Box contents */
 213 div.box div.contents {
 214    margin-top: 3px;
 215 }
 216
 217
 218 /******** Table of Contents Section ********/
 219
 220 /* Controls for switching between printing and viewing modes */
 221 div#printerControls {
 222    white-space: nowrap;
 223    font-weight: bold;
 224    padding: 5px;
 225    margin: 5px;
 226 }
 227 /* Controls that can collapse or expand all XML Instance
 228    Representation and Schema Component Representation boxes */
 229 div#globalControls {
 230    padding: 10px;
 231    margin: 5px;
 232 }
 233
 234
 235 /******** Schema Document Properties Section ********/
 236
 237 /* Table displaying the namespaces declared in the schema */
 238 table.namespaces th {
 239 }
 240 table.namespaces td {
 241 }
 242 /* Target namespace of the schema */
 243 span.targetNS {
 244 }
 245
 246
 247 /******** Schema Components' Sections ********/
 248
 249 /* Name of schema component */
 250 .name {
 251 }
 252
 253 /* Hierarchy table */
 254 table.hierarchy {
 255    width: 90%;
 256 }
 257 table.hierarchy th {
 258    font-weight: normal;
 259    font-style: italic;
 260    width: 20%;
 261 }
 262 table.hierarchy th, table.hierarchy td {
 263    padding: 5px;
 264 }
 265
 266 /* XML Instance Representation table */
 267 div.sample {
 268    width: 90%;
 269 }
 270 div.sample div.contents {
 271    padding: 5px;
 272    font-family: Courier New, sans-serif;
 273    font-size: 10pt;
 274 }
 275    /* Normal elements and attributes */
 276 div.sample div.contents, div.sample div.contents a {
 277    color: black;
 278 }
 279    /* Group Headers */
 280 div.sample div.contents .group, div.sample div.contents .group a {
 281    color: #999; /* Light gray */
 282 }
 283    /* Type Information */
 284 div.sample div.contents .type, div.sample div.contents .type a {
 285    color: #999; /* Light gray */
 286 }
 287    /* Occurrence Information */
 288 div.sample div.contents .occurs, div.sample div.contents .occurs a {
 289    color: #999; /* Light gray */
 290 }
 291    /* Fixed values */
 292 div.sample div.contents .fixed {
 293    color: #063; /* Green */
 294    font-weight: bold;
 295 }
 296    /* Simple type constraints */
 297 div.sample div.contents .constraint, div.sample div.contents .constraint a {
 298    color: #999; /* Light gray */
 299 }
 300    /* Elements and attributes inherited from base type */
 301 div.sample div.contents .inherited, div.sample div.contents .inherited a {
 302    color: #666; /* Dark gray */
 303 }
 304    /* Elements and attributes added to or changed from base type */
 305 div.sample div.contents .newFields {
 306    font-weight: bold;
 307 }
 308    /* Other type of information */
 309 div.sample div.contents .other, div.sample div.contents .other a {
 310    color: #369; /* Blue */
 311    font-style: italic;
 312 }
 313    /* Link to open up window displaying documentation */
 314 div.sample div.contents a.documentation {
 315    text-decoration: none;
 316    padding-left: 3px;
 317    padding-right: 3px;
 318    padding-top: 0px;
 319    padding-bottom: 0px;
 320    font-weight: bold;
 321    font-size: 11pt;
 322    background-color: #FFD;
 323    color: #069;
 324 }
 325    /* Invert colors when hovering over link to open up window
 326       displaying documentation */
 327 div.sample div.contents a.documentation:hover {
 328    color: #FFD;
 329    background-color: #069;
 330 }
 331
 332 /* Schema Component Representation table */
 333 div.schemaComponent {
 334    width: 90%;
 335 }
 336 div.schemaComponent div.contents {
 337    font-family: Courier New, sans-serif;
 338    font-size: 10pt;
 339    padding: 5px;
 340 }
 341    /* Syntax characters */
 342 div.schemaComponent div.contents {
 343    color: #00f; /* blue */
 344 }
 345    /* Element and attribute tags */
 346 div.schemaComponent div.contents .scTag {
 347    color: #933; /* maroon */
 348 }
 349    /* Element and attribute content */
 350 div.schemaComponent div.contents .scContent, div.schemaComponent div.contents .scContent a {
 351    color: black;
 352    font-weight: bold;
 353 }
 354    /* Comments */
 355 div.schemaComponent div.contents .comment {
 356    color: #999; /* Light gray */
 357 }
 358
 359 /******** Legend Section ********/
 360
 361 div#legend table, div#legend div {
 362    margin-bottom: 3px;
 363 }
 364 div#legend div.hint {
 365    color: #999; /* Light gray */
 366    width: 90%;
 367    margin-left: 1em;
 368    margin-bottom: 2em;
 369 }
 370
 371
 372 /******** Glossary Section ********/
 373
 374 /* Glossary Terms */
 375 .glossaryTerm {
 376    font-weight: bold;
 377 }
 378
 379 /********* Details *************/
 380 .detailsToc {
 381   color: #666; /* Light gray */
 382 }
 383
 384 .details {
 385   color: #666; /* Light gray */
 386   text-decoration:none;
 387 }
 388
 389 /******** Footer ********/
 390
 391 .footer {
 392    font-size: 8pt;
 393 }
 394 </style>
 395       <script type="text/javascript">
 396 <!--
 397           /* IDs of XML Instance Representation boxes */
 398 var xiBoxes = new Array('h270234806_xibox', 'h155831896_xibox', 'h535307528_xibox', 'h-1124608460_xibox', 'h888650454_xibox', 'h712147427_xibox', 'h518348337_xibox', 'h-1794244794_xibox', 'h935679102_xibox', 'h-213750342_xibox', 'h1408823200_xibox', 'h-788356801_xibox', 'h259010940_xibox', 'h-1389097534_xibox', 'h-436501026_xibox', 'h1358103055_xibox', 'h-1514309680_xibox', 'h1535743041_xibox', 'h401516646_xibox', 'h917087604_xibox', 'h158033242_xibox', 'h-675984882_xibox', 'h-763252414_xibox', 'h-54338178_xibox', 'h-676012345_xibox', 'h-993584945_xibox', 'h-853091232_xibox', 'h-979596407_xibox', 'h-1112505301_xibox', 'h332351765_xibox', 'h517931443_xibox', 'h-1691165380_xibox', 'h-802965662_xibox', 'h519911868_xibox', 'h192331856_xibox', 'h-1482113798_xibox', 'h577349652_xibox');
 399 /* IDs of diagram boxes */
 400 var diagramBoxes = new Array('h270234806_diagram', 'h155831896_diagram', 'h535307528_diagram', 'h-1124608460_diagram', 'h888650454_diagram', 'h712147427_diagram', 'h518348337_diagram', 'h-1794244794_diagram', 'h935679102_diagram', 'h-213750342_diagram', 'h1408823200_diagram', 'h-788356801_diagram', 'h259010940_diagram', 'h-1389097534_diagram', 'h-436501026_diagram', 'h1358103055_diagram', 'h-1514309680_diagram', 'h1535743041_diagram', 'h401516646_diagram', 'h917087604_diagram', 'h158033242_diagram', 'h-675984882_diagram', 'h-763252414_diagram', 'h-54338178_diagram', 'h-676012345_diagram', 'h-993584945_diagram', 'h-853091232_diagram', 'h-979596407_diagram', 'h-1112505301_diagram', 'h332351765_diagram', 'h517931443_diagram', 'h-1691165380_diagram', 'h-802965662_diagram', 'h519911868_diagram', 'h192331856_diagram', 'h-1482113798_diagram', 'h577349652_diagram');
 401 /* IDs of logical diagram boxes */
 402 var logicalDiagramBoxes = new Array('h270234806_logicalDiagram');
 403 /* IDs of Schema Component Representation boxes */
 404 var scBoxes = new Array('schema_scbox', 'h270234806_scbox', 'h155831896_scbox', 'h535307528_scbox', 'h-1124608460_scbox', 'h888650454_scbox', 'h712147427_scbox', 'h518348337_scbox', 'h-1794244794_scbox', 'h935679102_scbox', 'h-213750342_scbox', 'h1408823200_scbox', 'h-788356801_scbox', 'h259010940_scbox', 'h-1389097534_scbox', 'h-436501026_scbox', 'h1358103055_scbox', 'h-1514309680_scbox', 'h1535743041_scbox', 'h401516646_scbox', 'h917087604_scbox', 'h158033242_scbox', 'h-675984882_scbox', 'h-763252414_scbox', 'h-54338178_scbox', 'h-676012345_scbox', 'h-993584945_scbox', 'h-853091232_scbox', 'h-979596407_scbox', 'h-1112505301_scbox', 'h332351765_scbox', 'h517931443_scbox', 'h-1691165380_scbox', 'h-802965662_scbox', 'h519911868_scbox', 'h192331856_scbox', 'h-1482113798_scbox', 'h577349652_scbox');
 405
 406 /**
 407  * Can get the ID of the button controlling
 408  * a collapseable box by concatenating
 409  * this string onto the ID of the box itself.
 410  */
 411 var B_SFIX = "_button";
 412
 413
 414 /**
 415  * Returns an element in the current HTML document.
 416  *
 417  * @param elementID Identifier of HTML element
 418  * @return               HTML element object
 419  */
 420 function getElementObject(elementID) {
 421     var elemObj = null;
 422     if (document.getElementById) {
 423         elemObj = document.getElementById(elementID);
 424     }
 425     return elemObj;
 426 }
 427
 428 /**
 429  * Closes a collapseable box.
 430  *
 431  * @param boxObj       Collapseable box
 432  * @param buttonObj Button controlling box
 433  */
 434 function closeBox(boxObj, buttonObj) {
 435   if (boxObj == null || buttonObj == null) {
 436      // Box or button not found
 437   } else {
 438      // Change 'display' CSS property of box
 439      boxObj.style.display="none";
 440
 441      // Change text of button
 442      if (boxObj.style.display=="none") {
 443         buttonObj.value=" + ";
 444      }
 445   }
 446 }
 447
 448 /**
 449  * Opens a collapseable box.
 450  *
 451  * @param boxObj       Collapseable box
 452  * @param buttonObj Button controlling box
 453  */
 454 function openBox(boxObj, buttonObj) {
 455   if (boxObj == null || buttonObj == null) {
 456      // Box or button not found
 457   } else {
 458      // Change 'display' CSS property of box
 459      boxObj.style.display="block";
 460
 461      // Change text of button
 462      if (boxObj.style.display=="block") {
 463         buttonObj.value=" - ";
 464      }
 465   }
 466 }
 467
 468 /**
 469  * Sets the state of a collapseable box.
 470  *
 471  * @param boxID Identifier of box
 472  * @param open If true, box is "opened",
 473  *             Otherwise, box is "closed".
 474  */
 475 function setState(boxID, open) {
 476   var boxObj = getElementObject(boxID);
 477   var buttonObj = getElementObject(boxID+B_SFIX);
 478   if (boxObj == null || buttonObj == null) {
 479      // Box or button not found
 480   } else if (open) {
 481      openBox(boxObj, buttonObj);
 482      // Make button visible
 483      buttonObj.style.display="inline";
 484   } else {
 485      closeBox(boxObj, buttonObj);
 486      // Make button visible
 487      buttonObj.style.display="inline";
 488   }
 489 }
 490
 491 /**
 492  * Switches the state of a collapseable box, e.g.
 493  * if it's opened, it'll be closed, and vice versa.
 494  *
 495  * @param boxID Identifier of box
 496  */
 497 function switchState(boxID) {
 498   var boxObj = getElementObject(boxID);
 499   var buttonObj = getElementObject(boxID+B_SFIX);
 500   if (boxObj == null || buttonObj == null) {
 501      // Box or button not found
 502   } else if (boxObj.style.display=="none") {
 503      // Box is closed, so open it
 504      openBox(boxObj, buttonObj);
 505   } else if (boxObj.style.display=="block") {
 506      // Box is opened, so close it
 507      closeBox(boxObj, buttonObj);
 508   }
 509 }
 510
 511 /**
 512  * Closes all boxes in a given list.
 513  *
 514  * @param boxList Array of box IDs
 515  */
 516 function collapseAll(boxList) {
 517   var idx;
 518   for (idx = 0; idx < boxList.length; idx++) {
 519      var boxObj = getElementObject(boxList[idx]);
 520      var buttonObj = getElementObject(boxList[idx]+B_SFIX);
 521      closeBox(boxObj, buttonObj);
 522   }
 523 }
 524
 525 /**
 526  * Open all boxes in a given list.
 527  *
 528  * @param boxList Array of box IDs
 529  */
 530 function expandAll(boxList) {
 531   var idx;
 532   for (idx = 0; idx < boxList.length; idx++) {
 533      var boxObj = getElementObject(boxList[idx]);
 534      var buttonObj = getElementObject(boxList[idx]+B_SFIX);
 535      openBox(boxObj, buttonObj);
 536   }
 537 }
 538
 539 /**
 540  * Makes all the control buttons of boxes appear.
 541  *
 542  * @param boxList Array of box IDs
 543  */
 544 function viewControlButtons(boxList) {
 545     var idx;
 546     for (idx = 0; idx < boxList.length; idx++) {
 547         buttonObj = getElementObject(boxList[idx]+B_SFIX);
 548         if (buttonObj != null) {
 549             buttonObj.style.display = "inline";
 550         }
 551     }
 552 }
 553
 554 /**
 555  * Makes all the control buttons of boxes disappear.
 556  *
 557  * @param boxList Array of box IDs
 558  */
 559 function hideControlButtons(boxList) {
 560     var idx;
 561     for (idx = 0; idx < boxList.length; idx++) {
 562         buttonObj = getElementObject(boxList[idx]+B_SFIX);
 563         if (buttonObj != null) {
 564             buttonObj.style.display = "none";
 565         }
 566     }
 567 }
 568
 569 /**
 570  * Sets the page for either printing mode
 571  * or viewing mode. In printing mode, the page
 572  * is made to be more readable when printing it out.
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 725    </head>
 726    <body>
 727       <h1>
 728          <a name="top">phyloXML 1.10</a>
 729       </h1>
 730       <div style="float: right;">
 731          <div id="printerControls" style="display:none;">
 732             <input type="checkbox" onclick="displayMode(this.checked)"/>Printer-friendly Version</div>
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 743          <div id="globalControls" style="display:none">
 744             <strong>Logical Diagram:</strong>
 745             <br/>
 746             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(logicalDiagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(logicalDiagramBoxes)">Collapse All</a> ]</span>
 747             <br/>
 748             <br/>
 749             <strong>XML Instance Representation:</strong>
 750             <br/>
 751             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(xiBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(xiBoxes)">Collapse All</a> ]</span>
 752             <br/>
 753             <br/>
 754             <strong>Diagram:</strong>
 755             <br/>
 756             <span style="margin-left: 1em; white-space: nowrap">[ <a href="javascript:void(0)" onclick="expandAll(diagramBoxes)">Expand All</a> | <a href="javascript:void(0)" onclick="collapseAll(diagramBoxes)">Collapse All</a> ]</span>
 757             <br/>
 758             <br/>
 759             <strong>Schema Component Representation:</strong>
 760             <br/>
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 773       </div>
 774       <h2>Table of Contents</h2>
 775       <ul>
 776          <li>
 777             <a href="#SchemaProperties">Schema Document Properties</a>
 778          </li>
 779          <li>
 780             <a href="#SchemaDeclarations">Global Declarations</a>
 781             <ul>
 782                <li>
 783                   <a href="#h270234806">Element: <strong>phyloxml</strong>
 784                   </a>
 785                </li>
 786             </ul>
 787          </li>
 788          <li>
 789             <a href="#SchemaDefinitions">Global Definitions</a>
 790             <ul>
 791                <li>
 792                   <a href="#h-788356801">Complex Type: <strong>Accession</strong>
 793                   </a>
 794                </li>
 795                <li>
 796                   <a href="#h917087604">Complex Type: <strong>Annotation</strong>
 797                   </a>
 798                </li>
 799                <li>
 800                   <a href="#h1535743041">Complex Type: <strong>BinaryCharacterList</strong>
 801                   </a>
 802                </li>
 803                <li>
 804                   <a href="#h-1514309680">Complex Type: <strong>BinaryCharacters</strong>
 805                   </a>
 806                </li>
 807                <li>
 808                   <a href="#h-1691165380">Complex Type: <strong>BranchColor</strong>
 809                   </a>
 810                </li>
 811                <li>
 812                   <a href="#h-1124608460">Complex Type: <strong>Clade</strong>
 813                   </a>
 814                </li>
 815                <li>
 816                   <a href="#h192331856">Complex Type: <strong>CladeRelation</strong>
 817                   </a>
 818                </li>
 819                <li>
 820                   <a href="#h-993584945">Complex Type: <strong>Confidence</strong>
 821                   </a>
 822                </li>
 823                <li>
 824                   <a href="#h517931443">Complex Type: <strong>Date</strong>
 825                   </a>
 826                </li>
 827                <li>
 828                   <a href="#h-979596407">Complex Type: <strong>Distribution</strong>
 829                   </a>
 830                </li>
 831                <li>
 832                   <a href="#h259010940">Complex Type: <strong>DomainArchitecture</strong>
 833                   </a>
 834                </li>
 835                <li>
 836                   <a href="#h-436501026">Complex Type: <strong>Events</strong>
 837                   </a>
 838                </li>
 839                <li>
 840                   <a href="#h-853091232">Complex Type: <strong>Id</strong>
 841                   </a>
 842                </li>
 843                <li>
 844                   <a href="#h-213750342">Complex Type: <strong>MolSeq</strong>
 845                   </a>
 846                </li>
 847                <li>
 848                   <a href="#h535307528">Complex Type: <strong>Phylogeny</strong>
 849                   </a>
 850                </li>
 851                <li>
 852                   <a href="#h155831896">Complex Type: <strong>Phyloxml</strong>
 853                   </a>
 854                </li>
 855                <li>
 856                   <a href="#h-1112505301">Complex Type: <strong>Point</strong>
 857                   </a>
 858                </li>
 859                <li>
 860                   <a href="#h332351765">Complex Type: <strong>Polygon</strong>
 861                   </a>
 862                </li>
 863                <li>
 864                   <a href="#h158033242">Complex Type: <strong>Property</strong>
 865                   </a>
 866                </li>
 867                <li>
 868                   <a href="#h-1389097534">Complex Type: <strong>ProteinDomain</strong>
 869                   </a>
 870                </li>
 871                <li>
 872                   <a href="#h401516646">Complex Type: <strong>Reference</strong>
 873                   </a>
 874                </li>
 875                <li>
 876                   <a href="#h-1794244794">Complex Type: <strong>Sequence</strong>
 877                   </a>
 878                </li>
 879                <li>
 880                   <a href="#h-802965662">Complex Type: <strong>SequenceRelation</strong>
 881                   </a>
 882                </li>
 883                <li>
 884                   <a href="#h888650454">Complex Type: <strong>Taxonomy</strong>
 885                   </a>
 886                </li>
 887                <li>
 888                   <a href="#h-676012345">Complex Type: <strong>Uri</strong>
 889                   </a>
 890                </li>
 891                <li>
 892                   <a href="#h-763252414">Simple Type: <strong>AppliesTo</strong>
 893                   </a>
 894                </li>
 895                <li>
 896                   <a href="#h1358103055">Simple Type: <strong>EventType</strong>
 897                   </a>
 898                </li>
 899                <li>
 900                   <a href="#h-54338178">Simple Type: <strong>PropertyDataType</strong>
 901                   </a>
 902                </li>
 903                <li>
 904                   <a href="#h518348337">Simple Type: <strong>Rank</strong>
 905                   </a>
 906                </li>
 907                <li>
 908                   <a href="#h519911868">Simple Type: <strong>SequenceRelationType</strong>
 909                   </a>
 910                </li>
 911                <li>
 912                   <a href="#h935679102">Simple Type: <strong>SequenceSymbol</strong>
 913                   </a>
 914                </li>
 915                <li>
 916                   <a href="#h1408823200">Simple Type: <strong>SequenceType</strong>
 917                   </a>
 918                </li>
 919                <li>
 920                   <a href="#h712147427">Simple Type: <strong>TaxonomyCode</strong>
 921                   </a>
 922                </li>
 923                <li>
 924                   <a href="#h577349652">Simple Type: <strong>id_ref</strong>
 925                   </a>
 926                </li>
 927                <li>
 928                   <a href="#h-1482113798">Simple Type: <strong>id_source</strong>
 929                   </a>
 930                </li>
 931                <li>
 932                   <a href="#h-675984882">Simple Type: <strong>ref</strong>
 933                   </a>
 934                </li>
 935             </ul>
 936          </li>
 937       </ul>
 938       <ul id="legendTOC" style="margin-top: 0em">
 939          <li>
 940             <a href="#Legend">Legend</a>
 941          </li>
 942       </ul>
 943       <ul id="glossaryTOC" style="margin-top: 0em">
 944          <li>
 945             <a href="#Glossary">Glossary</a>
 946          </li>
 947       </ul>
 948       <div style="text-align: right; clear: both;">
 949          <a href="#top">top</a>
 950       </div>
 951       <hr/>
 952       <h2>
 953          <a name="SchemaProperties">Schema Document Properties</a>
 954       </h2>
 955       <table class="properties">
 956          <tr>
 957             <th>
 958                <a title="Look up 'Target Namespace' in glossary"
 959                   href="phyloxml.xsd.html#term_TargetNS">Target Namespace</a>
 960             </th>
 961             <td>
 962                <span class="targetNS">http://www.phyloxml.org</span>
 963             </td>
 964          </tr>
 965          <tr>
 966             <th>Element and Attribute Namespaces</th>
 967             <td>
 968                <ul>
 969                   <li>Global element and attribute declarations belong to this schema's target namespace.</li>
 970                   <li>By default, local element declarations belong to this schema's target namespace.</li>
 971                   <li>By default, local attribute declarations have no namespace.</li>
 972                </ul>
 973             </td>
 974          </tr>
 975          <tr>
 976             <th>Documentation</th>
 977             <td class="documentation"> phyloXML is an XML language to describe evolutionary trees and associated data. Version: 1.10.
 978          License: dual-licensed under the LGPL or Ruby's License. Copyright (c) 2008-2011 Christian M Zmasek.</td>
 979          </tr>
 980       </table>
 981       <h3>Declared Namespaces</h3>
 982       <table class="namespaces">
 983          <tr>
 984             <th>Prefix</th>
 985             <th>Namespace</th>
 986          </tr>
 987          <tr>
 988             <td>
 989                <a name="ns_xml">xml</a>
 990             </td>
 991             <td>http://www.w3.org/XML/1998/namespace</td>
 992          </tr>
 993          <tr>
 994             <td>
 995                <a name="ns_phy">phy</a>
 996             </td>
 997             <td>
 998                <span class="targetNS">http://www.phyloxml.org</span>
 999             </td>
1000          </tr>
1001          <tr>
1002             <td>
1003                <a name="ns_xs">xs</a>
1004             </td>
1005             <td>http://www.w3.org/2001/XMLSchema</td>
1006          </tr>
1007       </table>
1008       <div class="schemaComponent box">
1009          <div>
1010             <input type="button" id="schema_scbox_button" class="control"
1011                    onclick="switchState('schema_scbox'); return false;"
1012                    style="display: none"/>
1013             <span class="caption">Schema Component Representation</span>
1014          </div>
1015          <div id="schema_scbox" class="contents">
1016             <div style="margin-left: 0em">&lt;<span class="scTag">xs:schema</span>
1017                <span class="scTag">targetNamespace</span>="<span class="scContent">http://www.phyloxml.org</span>" <span class="scTag">elementFormDefault</span>="<span class="scContent">qualified</span>" <span class="scTag">attributeFormDefault</span>="<span class="scContent">unqualified</span>"&gt;<div class="scContent" style="margin-left: 1.5em">...</div>&lt;/<span class="scTag">xs:schema</span>&gt;</div>
1018          </div>
1019          <script type="text/javascript">
1020 <!--
1021           setState('schema_scbox', false);
1022 // -->
1023 </script>
1024       </div>
1025       <div style="text-align: right; clear: both;">
1026          <a href="#top">top</a>
1027       </div>
1028       <hr/>
1029       <h2>
1030          <a name="SchemaDeclarations">Global Declarations</a>
1031       </h2>
1032       <h3>Element: <a name="h270234806" class="name">phyloxml</a>
1033       </h3>
1034       <table class="properties">
1035          <tr>
1036             <th>Name</th>
1037             <td>phyloxml</td>
1038          </tr>
1039          <tr>
1040             <th>Type</th>
1041             <td>
1042                <span class="type">
1043                   <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phyloxml&#34; type definition." href="#h155831896">Phyloxml</a>
1044                </span>
1045             </td>
1046          </tr>
1047          <tr>
1048             <th>
1049                <a title="Look up 'Nillable' in glossary" href="phyloxml.xsd.html#term_Nillable">Nillable</a>
1050             </th>
1051             <td>no</td>
1052          </tr>
1053          <tr>
1054             <th>
1055                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1056             </th>
1057             <td>no</td>
1058          </tr>
1059       </table>
1060       <div class="sample box">
1061          <div>
1062             <input type="button" id="h270234806_logicalDiagram_button" class="control"
1063                    onclick="switchState('h270234806_logicalDiagram'); return false;"
1064                    style="display: none"/>
1065             <span class="caption">Logical Diagram</span>
1066          </div>
1067          <div id="h270234806_logicalDiagram" class="contents">
1068             <img usemap="#h1900732667" src="schemaDiagrams/h1900732667.png"/>
1069             <!--
1070             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1900732667.map--><map name="h1900732667">
1071 </map>
1072          </div>
1073          <script type="text/javascript">
1074 <!--
1075           setState('h270234806_logicalDiagram', false);
1076 // -->
1077 </script>
1078       </div>
1079       <div class="sample box">
1080          <div>
1081             <input type="button" id="h270234806_xibox_button" class="control"
1082                    onclick="switchState('h270234806_xibox'); return false;"
1083                    style="display: none"/>
1084             <span class="caption">XML Instance Representation</span>
1085          </div>
1086          <div id="h270234806_xibox" class="contents">
1087             <div style="margin-left: 0em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml&gt; <br/>
1088                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
1089                   <span class="occurs">[1..*]</span>
1090                </span>
1091                <br/>
1092                <div style="margin-left: 3em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="type">
1093                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
1094                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="occurs">[0..*]</span>
1095                </div>
1096                <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1097                </div>
1098                <span class="group" style="margin-left: 1.5em">End Sequence</span>
1099                <br/>&lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phyloxml&gt;</div>
1100          </div>
1101          <script type="text/javascript">
1102 <!--
1103           setState('h270234806_xibox', true);
1104 // -->
1105 </script>
1106       </div>
1107       <div class="sample box">
1108          <div>
1109             <input type="button" id="h270234806_diagram_button" class="control"
1110                    onclick="switchState('h270234806_diagram'); return false;"
1111                    style="display: none"/>
1112             <span class="caption">Diagram</span>
1113          </div>
1114          <div id="h270234806_diagram" class="contents">
1115             <img usemap="#h482833585" src="schemaDiagrams/h482833585.png"/>
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1120
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1133                    style="display: none"/>
1134             <span class="caption">Schema Component Representation</span>
1135          </div>
1136          <div id="h270234806_scbox" class="contents">
1137             <div style="margin-left: 0em">&lt;<span class="scTag">xs:element</span>
1138                <span class="scTag">name</span>="<span class="scContent">phyloxml</span>" <span class="scTag">type</span>="<span class="scContent">
1139                   <span class="type">
1140                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phyloxml&#34; type definition." href="#h155831896">Phyloxml</a>
1141                   </span>
1142                </span>"/&gt;</div>
1143          </div>
1144          <script type="text/javascript">
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1147 // -->
1148 </script>
1149       </div>
1150       <div style="text-align: right; clear: both;">
1151          <a href="#top">top</a>
1152       </div>
1153       <hr/>
1154       <h2>
1155          <a name="SchemaDefinitions">Global Definitions</a>
1156       </h2>
1157       <h3>Complex Type: <a name="h-788356801" class="name">Accession</a>
1158       </h3>
1159       <table class="hierarchy">
1160          <tr>
1161             <th>Super-types:</th>
1162             <td>
1163                <span class="type">
1164                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Accession</strong> (by extension)</td>
1165          </tr>
1166          <tr>
1167             <th>Sub-types:</th>
1168             <td>None</td>
1169          </tr>
1170       </table>
1171       <table class="properties">
1172          <tr>
1173             <th>Name</th>
1174             <td>Accession</td>
1175          </tr>
1176          <tr>
1177             <th>Used by (from the same schema document)</th>
1178             <td>Complex Type <b>
1179                   <a href="#h-1794244794">Sequence</a>
1180                </b>
1181             </td>
1182          </tr>
1183          <tr>
1184             <th>
1185                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1186             </th>
1187             <td>no</td>
1188          </tr>
1189          <tr>
1190             <th>Documentation</th>
1191             <td class="documentation"> Element Accession is used to capture the local part in a sequence identifier (e.g. 'P17304'
1192             in 'UniProtKB:P17304', in which case the 'source' attribute would be 'UniProtKB'). </td>
1193          </tr>
1194       </table>
1195       <div class="sample box">
1196          <div>
1197             <input type="button" id="h-788356801_xibox_button" class="control"
1198                    onclick="switchState('h-788356801_xibox'); return false;"
1199                    style="display: none"/>
1200             <span class="caption">XML Instance Representation</span>
1201          </div>
1202          <div id="h-788356801_xibox" class="contents">
1203             <div style="margin-left: 0em">&lt;...<br/>
1204                <span style="margin-left: 0.5em" class="newFields"> source="<span class="type">
1205                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1206                   <span class="occurs">[1]</span>"</span>&gt; <br/>
1207                <span style="margin-left: 1.5em">
1208                   <span class="type">
1209                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1210                </span>
1211                <br/>&lt;/...&gt;</div>
1212          </div>
1213          <script type="text/javascript">
1214 <!--
1215           setState('h-788356801_xibox', true);
1216 // -->
1217 </script>
1218       </div>
1219       <div class="sample box">
1220          <div>
1221             <input type="button" id="h-788356801_diagram_button" class="control"
1222                    onclick="switchState('h-788356801_diagram'); return false;"
1223                    style="display: none"/>
1224             <span class="caption">Diagram</span>
1225          </div>
1226          <div id="h-788356801_diagram" class="contents">
1227             <img usemap="#h-1142642744" src="schemaDiagrams/h-1142642744.png"/>
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1230 </map>
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1234           setState('h-788356801_diagram', true);
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1237       </div>
1238       <div class="schemaComponent box">
1239          <div>
1240             <input type="button" id="h-788356801_scbox_button" class="control"
1241                    onclick="switchState('h-788356801_scbox'); return false;"
1242                    style="display: none"/>
1243             <span class="caption">Schema Component Representation</span>
1244          </div>
1245          <div id="h-788356801_scbox" class="contents">
1246             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1247                <span class="scTag">name</span>="<span class="scContent">Accession</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
1248                      <span class="scTag">base</span>="<span class="scContent">
1249                         <span class="type">
1250                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1251                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1252                         <span class="scTag">name</span>="<span class="scContent">source</span>" <span class="scTag">type</span>="<span class="scContent">
1253                            <span class="type">
1254                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1255                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1256          </div>
1257          <script type="text/javascript">
1258 <!--
1259           setState('h-788356801_scbox', false);
1260 // -->
1261 </script>
1262       </div>
1263       <div style="text-align: right; clear: both;">
1264          <a href="#top">top</a>
1265       </div>
1266       <hr/>
1267       <h3>Complex Type: <a name="h917087604" class="name">Annotation</a>
1268       </h3>
1269       <table class="hierarchy">
1270          <tr>
1271             <th>Super-types:</th>
1272             <td>None</td>
1273          </tr>
1274          <tr>
1275             <th>Sub-types:</th>
1276             <td>None</td>
1277          </tr>
1278       </table>
1279       <table class="properties">
1280          <tr>
1281             <th>Name</th>
1282             <td>Annotation</td>
1283          </tr>
1284          <tr>
1285             <th>Used by (from the same schema document)</th>
1286             <td>Complex Type <b>
1287                   <a href="#h-1794244794">Sequence</a>
1288                </b>
1289             </td>
1290          </tr>
1291          <tr>
1292             <th>
1293                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1294             </th>
1295             <td>no</td>
1296          </tr>
1297          <tr>
1298             <th>Documentation</th>
1299             <td class="documentation"> The annotation of a molecular sequence. It is recommended to annotate by using the optional
1300             'ref' attribute (some examples of acceptable values for the ref attribute: 'GO:0008270',
1301             'KEGG:Tetrachloroethene degradation', 'EC:1.1.1.1'). Optional element 'desc' allows for a free text
1302             description. Optional element 'confidence' is used to state the type and value of support for a annotation.
1303             Similarly, optional attribute 'evidence' is used to describe the evidence for a annotation as free text
1304             (e.g. 'experimental'). Optional element 'property' allows for further, typed and referenced annotations from
1305             external resources.</td>
1306          </tr>
1307       </table>
1308       <div class="sample box">
1309          <div>
1310             <input type="button" id="h917087604_xibox_button" class="control"
1311                    onclick="switchState('h917087604_xibox'); return false;"
1312                    style="display: none"/>
1313             <span class="caption">XML Instance Representation</span>
1314          </div>
1315          <div id="h917087604_xibox" class="contents">
1316             <div style="margin-left: 0em">&lt;...<br/>
1317                <span style="margin-left: 0.5em"> ref="<span class="type">
1318                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
1319                   </span>
1320                   <span class="occurs">[0..1]</span>"</span>
1321                <br/>
1322                <span style="margin-left: 0.5em"> source="<span class="type">
1323                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1324                   <span class="occurs">[0..1]</span>"</span>
1325                <br/>
1326                <span style="margin-left: 0.5em"> evidence="<span class="type">
1327                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1328                   <span class="occurs">[0..1]</span>"</span>
1329                <br/>
1330                <span style="margin-left: 0.5em"> type="<span class="type">
1331                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1332                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1333                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
1334                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
1335                </div>
1336                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1337                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1338                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
1339                </div>
1340                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="type">
1341                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
1342                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="occurs">[0..*]</span>
1343                </div>
1344                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
1345                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
1346                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
1347                </div>&lt;/...&gt;</div>
1348          </div>
1349          <script type="text/javascript">
1350 <!--
1351           setState('h917087604_xibox', true);
1352 // -->
1353 </script>
1354       </div>
1355       <div class="sample box">
1356          <div>
1357             <input type="button" id="h917087604_diagram_button" class="control"
1358                    onclick="switchState('h917087604_diagram'); return false;"
1359                    style="display: none"/>
1360             <span class="caption">Diagram</span>
1361          </div>
1362          <div id="h917087604_diagram" class="contents">
1363             <img usemap="#h624412339" src="schemaDiagrams/h624412339.png"/>
1364             <!--
1365             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h624412339.map--><map name="h624412339">
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1385       </div>
1386       <div class="schemaComponent box">
1387          <div>
1388             <input type="button" id="h917087604_scbox_button" class="control"
1389                    onclick="switchState('h917087604_scbox'); return false;"
1390                    style="display: none"/>
1391             <span class="caption">Schema Component Representation</span>
1392          </div>
1393          <div id="h917087604_scbox" class="contents">
1394             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1395                <span class="scTag">name</span>="<span class="scContent">Annotation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1396                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
1397                         <span class="type">
1398                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1399                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1400                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1401                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
1402                         <span class="type">
1403                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1404                         </span>
1405                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1406                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1407                      <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
1408                         <span class="type">
1409                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
1410                         </span>
1411                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
1412                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1413                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
1414                         <span class="type">
1415                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
1416                         </span>
1417                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1418                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1419                   <span class="scTag">name</span>="<span class="scContent">ref</span>" <span class="scTag">type</span>="<span class="scContent">
1420                      <span class="type">
1421                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
1422                      </span>
1423                   </span>"/&gt;</div>
1424                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1425                   <span class="scTag">name</span>="<span class="scContent">source</span>" <span class="scTag">type</span>="<span class="scContent">
1426                      <span class="type">
1427                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1428                   </span>"/&gt;</div>
1429                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1430                   <span class="scTag">name</span>="<span class="scContent">evidence</span>" <span class="scTag">type</span>="<span class="scContent">
1431                      <span class="type">
1432                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1433                   </span>"/&gt;</div>
1434                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1435                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1436                      <span class="type">
1437                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1438                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1439          </div>
1440          <script type="text/javascript">
1441 <!--
1442           setState('h917087604_scbox', false);
1443 // -->
1444 </script>
1445       </div>
1446       <div style="text-align: right; clear: both;">
1447          <a href="#top">top</a>
1448       </div>
1449       <hr/>
1450       <h3>Complex Type: <a name="h1535743041" class="name">BinaryCharacterList</a>
1451       </h3>
1452       <table class="hierarchy">
1453          <tr>
1454             <th>Super-types:</th>
1455             <td>None</td>
1456          </tr>
1457          <tr>
1458             <th>Sub-types:</th>
1459             <td>None</td>
1460          </tr>
1461       </table>
1462       <table class="properties">
1463          <tr>
1464             <th>Name</th>
1465             <td>BinaryCharacterList</td>
1466          </tr>
1467          <tr>
1468             <th>Used by (from the same schema document)</th>
1469             <td>Complex Type <b>
1470                   <a href="#h-1514309680">BinaryCharacters</a>
1471                </b>, Complex Type <b>
1472                   <a href="#h-1514309680">BinaryCharacters</a>
1473                </b>, Complex Type <b>
1474                   <a href="#h-1514309680">BinaryCharacters</a>
1475                </b>, Complex Type <b>
1476                   <a href="#h-1514309680">BinaryCharacters</a>
1477                </b>
1478             </td>
1479          </tr>
1480          <tr>
1481             <th>
1482                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1483             </th>
1484             <td>no</td>
1485          </tr>
1486       </table>
1487       <div class="sample box">
1488          <div>
1489             <input type="button" id="h1535743041_xibox_button" class="control"
1490                    onclick="switchState('h1535743041_xibox'); return false;"
1491                    style="display: none"/>
1492             <span class="caption">XML Instance Representation</span>
1493          </div>
1494          <div id="h1535743041_xibox" class="contents">
1495             <div style="margin-left: 0em">&lt;...&gt; <br/>
1496                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc&gt; <span class="type">
1497                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:bc&gt; <span class="occurs">[1..*]</span>
1498                </div>&lt;/...&gt;</div>
1499          </div>
1500          <script type="text/javascript">
1501 <!--
1502           setState('h1535743041_xibox', true);
1503 // -->
1504 </script>
1505       </div>
1506       <div class="sample box">
1507          <div>
1508             <input type="button" id="h1535743041_diagram_button" class="control"
1509                    onclick="switchState('h1535743041_diagram'); return false;"
1510                    style="display: none"/>
1511             <span class="caption">Diagram</span>
1512          </div>
1513          <div id="h1535743041_diagram" class="contents">
1514             <img usemap="#h508496390" src="schemaDiagrams/h508496390.png"/>
1515             <!--
1516             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h508496390.map--><map name="h508496390">
1517 </map>
1518          </div>
1519          <script type="text/javascript">
1520 <!--
1521           setState('h1535743041_diagram', true);
1522 // -->
1523 </script>
1524       </div>
1525       <div class="schemaComponent box">
1526          <div>
1527             <input type="button" id="h1535743041_scbox_button" class="control"
1528                    onclick="switchState('h1535743041_scbox'); return false;"
1529                    style="display: none"/>
1530             <span class="caption">Schema Component Representation</span>
1531          </div>
1532          <div id="h1535743041_scbox" class="contents">
1533             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1534                <span class="scTag">name</span>="<span class="scContent">BinaryCharacterList</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1535                      <span class="scTag">name</span>="<span class="scContent">bc</span>" <span class="scTag">type</span>="<span class="scContent">
1536                         <span class="type">
1537                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1538                      </span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1539          </div>
1540          <script type="text/javascript">
1541 <!--
1542           setState('h1535743041_scbox', false);
1543 // -->
1544 </script>
1545       </div>
1546       <div style="text-align: right; clear: both;">
1547          <a href="#top">top</a>
1548       </div>
1549       <hr/>
1550       <h3>Complex Type: <a name="h-1514309680" class="name">BinaryCharacters</a>
1551       </h3>
1552       <table class="hierarchy">
1553          <tr>
1554             <th>Super-types:</th>
1555             <td>None</td>
1556          </tr>
1557          <tr>
1558             <th>Sub-types:</th>
1559             <td>None</td>
1560          </tr>
1561       </table>
1562       <table class="properties">
1563          <tr>
1564             <th>Name</th>
1565             <td>BinaryCharacters</td>
1566          </tr>
1567          <tr>
1568             <th>Used by (from the same schema document)</th>
1569             <td>Complex Type <b>
1570                   <a href="#h-1124608460">Clade</a>
1571                </b>
1572             </td>
1573          </tr>
1574          <tr>
1575             <th>
1576                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1577             </th>
1578             <td>no</td>
1579          </tr>
1580          <tr>
1581             <th>Documentation</th>
1582             <td class="documentation"> The names and/or counts of binary characters present, gained, and lost at the root of a
1583             clade. </td>
1584          </tr>
1585       </table>
1586       <div class="sample box">
1587          <div>
1588             <input type="button" id="h-1514309680_xibox_button" class="control"
1589                    onclick="switchState('h-1514309680_xibox'); return false;"
1590                    style="display: none"/>
1591             <span class="caption">XML Instance Representation</span>
1592          </div>
1593          <div id="h-1514309680_xibox" class="contents">
1594             <div style="margin-left: 0em">&lt;...<br/>
1595                <span style="margin-left: 0.5em"> type="<span class="type">
1596                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1597                   <span class="occurs">[0..1]</span>"</span>
1598                <br/>
1599                <span style="margin-left: 0.5em"> gained_count="<span class="type">
1600                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1601                   <span class="occurs">[0..1]</span>"</span>
1602                <br/>
1603                <span style="margin-left: 0.5em"> lost_count="<span class="type">
1604                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1605                   <span class="occurs">[0..1]</span>"</span>
1606                <br/>
1607                <span style="margin-left: 0.5em"> present_count="<span class="type">
1608                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1609                   <span class="occurs">[0..1]</span>"</span>
1610                <br/>
1611                <span style="margin-left: 0.5em"> absent_count="<span class="type">
1612                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1613                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1614                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained&gt; <span class="type">
1615                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1616                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:gained&gt; <span class="occurs">[0..1]</span>
1617                </div>
1618                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost&gt; <span class="type">
1619                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1620                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lost&gt; <span class="occurs">[0..1]</span>
1621                </div>
1622                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present&gt; <span class="type">
1623                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1624                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:present&gt; <span class="occurs">[0..1]</span>
1625                </div>
1626                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent&gt; <span class="type">
1627                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1628                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:absent&gt; <span class="occurs">[0..1]</span>
1629                </div>&lt;/...&gt;</div>
1630          </div>
1631          <script type="text/javascript">
1632 <!--
1633           setState('h-1514309680_xibox', true);
1634 // -->
1635 </script>
1636       </div>
1637       <div class="sample box">
1638          <div>
1639             <input type="button" id="h-1514309680_diagram_button" class="control"
1640                    onclick="switchState('h-1514309680_diagram'); return false;"
1641                    style="display: none"/>
1642             <span class="caption">Diagram</span>
1643          </div>
1644          <div id="h-1514309680_diagram" class="contents">
1645             <img usemap="#h-81115689" src="schemaDiagrams/h-81115689.png"/>
1646             <!--
1647             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-81115689.map--><map name="h-81115689">
1648                <area shape="rect" alt="h1535743041" coords="278,0,376,40"
1649                      href="phyloxml.xsd.html#h1535743041"/>
1650
1651                <area shape="rect" alt="h1535743041" coords="278,50,362,90"
1652                      href="phyloxml.xsd.html#h1535743041"/>
1653
1654                <area shape="rect" alt="h1535743041" coords="278,100,383,140"
1655                      href="phyloxml.xsd.html#h1535743041"/>
1656
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1658                      href="phyloxml.xsd.html#h1535743041"/>
1659
1660             </map>
1661          </div>
1662          <script type="text/javascript">
1663 <!--
1664           setState('h-1514309680_diagram', true);
1665 // -->
1666 </script>
1667       </div>
1668       <div class="schemaComponent box">
1669          <div>
1670             <input type="button" id="h-1514309680_scbox_button" class="control"
1671                    onclick="switchState('h-1514309680_scbox'); return false;"
1672                    style="display: none"/>
1673             <span class="caption">Schema Component Representation</span>
1674          </div>
1675          <div id="h-1514309680_scbox" class="contents">
1676             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1677                <span class="scTag">name</span>="<span class="scContent">BinaryCharacters</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1678                      <span class="scTag">name</span>="<span class="scContent">gained</span>" <span class="scTag">type</span>="<span class="scContent">
1679                         <span class="type">
1680                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1681                         </span>
1682                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1683                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1684                      <span class="scTag">name</span>="<span class="scContent">lost</span>" <span class="scTag">type</span>="<span class="scContent">
1685                         <span class="type">
1686                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1687                         </span>
1688                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1689                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1690                      <span class="scTag">name</span>="<span class="scContent">present</span>" <span class="scTag">type</span>="<span class="scContent">
1691                         <span class="type">
1692                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1693                         </span>
1694                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
1695                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1696                      <span class="scTag">name</span>="<span class="scContent">absent</span>" <span class="scTag">type</span>="<span class="scContent">
1697                         <span class="type">
1698                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacterList&#34; type definition." href="#h1535743041">BinaryCharacterList</a>
1699                         </span>
1700                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
1701                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1702                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
1703                      <span class="type">
1704                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
1705                   </span>"/&gt;</div>
1706                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1707                   <span class="scTag">name</span>="<span class="scContent">gained_count</span>" <span class="scTag">type</span>="<span class="scContent">
1708                      <span class="type">
1709                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1710                   </span>"/&gt;</div>
1711                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1712                   <span class="scTag">name</span>="<span class="scContent">lost_count</span>" <span class="scTag">type</span>="<span class="scContent">
1713                      <span class="type">
1714                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1715                   </span>"/&gt;</div>
1716                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1717                   <span class="scTag">name</span>="<span class="scContent">present_count</span>" <span class="scTag">type</span>="<span class="scContent">
1718                      <span class="type">
1719                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1720                   </span>"/&gt;</div>
1721                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
1722                   <span class="scTag">name</span>="<span class="scContent">absent_count</span>" <span class="scTag">type</span>="<span class="scContent">
1723                      <span class="type">
1724                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
1725                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1726          </div>
1727          <script type="text/javascript">
1728 <!--
1729           setState('h-1514309680_scbox', false);
1730 // -->
1731 </script>
1732       </div>
1733       <div style="text-align: right; clear: both;">
1734          <a href="#top">top</a>
1735       </div>
1736       <hr/>
1737       <h3>Complex Type: <a name="h-1691165380" class="name">BranchColor</a>
1738       </h3>
1739       <table class="hierarchy">
1740          <tr>
1741             <th>Super-types:</th>
1742             <td>None</td>
1743          </tr>
1744          <tr>
1745             <th>Sub-types:</th>
1746             <td>None</td>
1747          </tr>
1748       </table>
1749       <table class="properties">
1750          <tr>
1751             <th>Name</th>
1752             <td>BranchColor</td>
1753          </tr>
1754          <tr>
1755             <th>Used by (from the same schema document)</th>
1756             <td>Complex Type <b>
1757                   <a href="#h-1124608460">Clade</a>
1758                </b>
1759             </td>
1760          </tr>
1761          <tr>
1762             <th>
1763                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1764             </th>
1765             <td>no</td>
1766          </tr>
1767          <tr>
1768             <th>Documentation</th>
1769             <td class="documentation"> This indicates the color of a clade when rendered (the color applies to the whole clade
1770             unless overwritten by the color(s) of sub clades).</td>
1771          </tr>
1772       </table>
1773       <div class="sample box">
1774          <div>
1775             <input type="button" id="h-1691165380_xibox_button" class="control"
1776                    onclick="switchState('h-1691165380_xibox'); return false;"
1777                    style="display: none"/>
1778             <span class="caption">XML Instance Representation</span>
1779          </div>
1780          <div id="h-1691165380_xibox" class="contents">
1781             <div style="margin-left: 0em">&lt;...&gt; <br/>
1782                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red&gt; <span class="type">
1783                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:red&gt; <span class="occurs">[1]</span>
1784                </div>
1785                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green&gt; <span class="type">
1786                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:green&gt; <span class="occurs">[1]</span>
1787                </div>
1788                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue&gt; <span class="type">
1789                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:blue&gt; <span class="occurs">[1]</span>
1790                </div>&lt;/...&gt;</div>
1791          </div>
1792          <script type="text/javascript">
1793 <!--
1794           setState('h-1691165380_xibox', true);
1795 // -->
1796 </script>
1797       </div>
1798       <div class="sample box">
1799          <div>
1800             <input type="button" id="h-1691165380_diagram_button" class="control"
1801                    onclick="switchState('h-1691165380_diagram'); return false;"
1802                    style="display: none"/>
1803             <span class="caption">Diagram</span>
1804          </div>
1805          <div id="h-1691165380_diagram" class="contents">
1806             <img usemap="#h-203375637" src="schemaDiagrams/h-203375637.png"/>
1807             <!--
1808             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-203375637.map--><map name="h-203375637">
1809 </map>
1810          </div>
1811          <script type="text/javascript">
1812 <!--
1813           setState('h-1691165380_diagram', true);
1814 // -->
1815 </script>
1816       </div>
1817       <div class="schemaComponent box">
1818          <div>
1819             <input type="button" id="h-1691165380_scbox_button" class="control"
1820                    onclick="switchState('h-1691165380_scbox'); return false;"
1821                    style="display: none"/>
1822             <span class="caption">Schema Component Representation</span>
1823          </div>
1824          <div id="h-1691165380_scbox" class="contents">
1825             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
1826                <span class="scTag">name</span>="<span class="scContent">BranchColor</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1827                      <span class="scTag">name</span>="<span class="scContent">red</span>" <span class="scTag">type</span>="<span class="scContent">
1828                         <span class="type">
1829                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1830                      </span>"/&gt;</div>
1831                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1832                      <span class="scTag">name</span>="<span class="scContent">green</span>" <span class="scTag">type</span>="<span class="scContent">
1833                         <span class="type">
1834                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1835                      </span>"/&gt;</div>
1836                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
1837                      <span class="scTag">name</span>="<span class="scContent">blue</span>" <span class="scTag">type</span>="<span class="scContent">
1838                         <span class="type">
1839                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:unsignedByte</span>
1840                      </span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
1841          </div>
1842          <script type="text/javascript">
1843 <!--
1844           setState('h-1691165380_scbox', false);
1845 // -->
1846 </script>
1847       </div>
1848       <div style="text-align: right; clear: both;">
1849          <a href="#top">top</a>
1850       </div>
1851       <hr/>
1852       <h3>Complex Type: <a name="h-1124608460" class="name">Clade</a>
1853       </h3>
1854       <table class="hierarchy">
1855          <tr>
1856             <th>Super-types:</th>
1857             <td>None</td>
1858          </tr>
1859          <tr>
1860             <th>Sub-types:</th>
1861             <td>None</td>
1862          </tr>
1863       </table>
1864       <table class="properties">
1865          <tr>
1866             <th>Name</th>
1867             <td>Clade</td>
1868          </tr>
1869          <tr>
1870             <th>Used by (from the same schema document)</th>
1871             <td>Complex Type <b>
1872                   <a href="#h535307528">Phylogeny</a>
1873                </b>, Complex Type <b>
1874                   <a href="#h-1124608460">Clade</a>
1875                </b>
1876             </td>
1877          </tr>
1878          <tr>
1879             <th>
1880                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
1881             </th>
1882             <td>no</td>
1883          </tr>
1884          <tr>
1885             <th>Documentation</th>
1886             <td class="documentation"> Element Clade is used in a recursive manner to describe the topology of a phylogenetic tree.
1887             The parent branch length of a clade can be described either with the 'branch_length' element or the
1888             'branch_length' attribute (it is not recommended to use both at the same time, though). Usage of the
1889             'branch_length' attribute allows for a less verbose description. Element 'confidence' is used to indicate
1890             the support for a clade/parent branch. Element 'events' is used to describe such events as gene-duplications
1891             at the root node/parent branch of a clade. Element 'width' is the branch width for this clade (including
1892             parent branch). Both 'color' and 'width' elements apply for the whole clade unless overwritten in-sub
1893             clades. Attribute 'id_source' is used to link other elements to a clade (on the xml-level).
1894          </td>
1895          </tr>
1896       </table>
1897       <div class="sample box">
1898          <div>
1899             <input type="button" id="h-1124608460_xibox_button" class="control"
1900                    onclick="switchState('h-1124608460_xibox'); return false;"
1901                    style="display: none"/>
1902             <span class="caption">XML Instance Representation</span>
1903          </div>
1904          <div id="h-1124608460_xibox" class="contents">
1905             <div style="margin-left: 0em">&lt;...<br/>
1906                <span style="margin-left: 0.5em"> branch_length="<span class="type">
1907                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
1908                   <span class="occurs">[0..1]</span>"</span>
1909                <br/>
1910                <span style="margin-left: 0.5em"> id_source="<span class="type">
1911                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
1912                   </span>
1913                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
1914                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
1915                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
1916                </div>
1917                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:branch_length&gt; <span class="type">
1918                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:branch_length&gt; <span class="occurs">[0..1]</span>
1919                </div>
1920                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
1921                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
1922                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..*]</span>
1923                </div>
1924                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width&gt; <span class="type">
1925                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:width&gt; <span class="occurs">[0..1]</span>
1926                </div>
1927                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color&gt; <span class="type">
1928                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BranchColor&#34; type definition." href="#h-1691165380">BranchColor</a>
1929                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:color&gt; <span class="occurs">[0..1]</span>
1930                </div>
1931                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id&gt; <span class="type">
1932                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
1933                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:node_id&gt; <span class="occurs">[0..1]</span>
1934                </div>
1935                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy&gt; <span class="type">
1936                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Taxonomy&#34; type definition." href="#h888650454">Taxonomy</a>
1937                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:taxonomy&gt; <span class="occurs">[0..*]</span>
1938                </div>
1939                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence&gt; <span class="type">
1940                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Sequence&#34; type definition." href="#h-1794244794">Sequence</a>
1941                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence&gt; <span class="occurs">[0..*]</span>
1942                </div>
1943                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:events&gt; <span class="type">
1944                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Events&#34; type definition." href="#h-436501026">Events</a>
1945                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:events&gt; <span class="occurs">[0..1]</span>
1946                </div>
1947                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters&gt; <span class="type">
1948                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacters&#34; type definition." href="#h-1514309680">BinaryCharacters</a>
1949                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:binary_characters&gt; <span class="occurs">[0..1]</span>
1950                </div>
1951                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution&gt; <span class="type">
1952                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Distribution&#34; type definition." href="#h-979596407">Distribution</a>
1953                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:distribution&gt; <span class="occurs">[0..*]</span>
1954                </div>
1955                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="type">
1956                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Date&#34; type definition." href="#h517931443">Date</a>
1957                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="occurs">[0..1]</span>
1958                </div>
1959                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:reference&gt; <span class="type">
1960                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Reference&#34; type definition." href="#h401516646">Reference</a>
1961                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:reference&gt; <span class="occurs">[0..*]</span>
1962                </div>
1963                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="type">
1964                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
1965                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="occurs">[0..*]</span>
1966                </div>
1967                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="type">
1968                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
1969                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="occurs">[0..*]</span>
1970                </div>
1971                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
1972                </div>&lt;/...&gt;</div>
1973          </div>
1974          <script type="text/javascript">
1975 <!--
1976           setState('h-1124608460_xibox', true);
1977 // -->
1978 </script>
1979       </div>
1980       <div class="sample box">
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1983                    onclick="switchState('h-1124608460_diagram'); return false;"
1984                    style="display: none"/>
1985             <span class="caption">Diagram</span>
1986          </div>
1987          <div id="h-1124608460_diagram" class="contents">
1988             <img usemap="#h854822387" src="schemaDiagrams/h854822387.png"/>
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2037             <input type="button" id="h-1124608460_scbox_button" class="control"
2038                    onclick="switchState('h-1124608460_scbox'); return false;"
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2040             <span class="caption">Schema Component Representation</span>
2041          </div>
2042          <div id="h-1124608460_scbox" class="contents">
2043             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2044                <span class="scTag">name</span>="<span class="scContent">Clade</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2045                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
2046                         <span class="type">
2047                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2048                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2049                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2050                      <span class="scTag">name</span>="<span class="scContent">branch_length</span>" <span class="scTag">type</span>="<span class="scContent">
2051                         <span class="type">
2052                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2053                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2054                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2055                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2056                         <span class="type">
2057                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2058                         </span>
2059                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2060                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2061                      <span class="scTag">name</span>="<span class="scContent">width</span>" <span class="scTag">type</span>="<span class="scContent">
2062                         <span class="type">
2063                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2064                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2065                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2066                      <span class="scTag">name</span>="<span class="scContent">color</span>" <span class="scTag">type</span>="<span class="scContent">
2067                         <span class="type">
2068                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BranchColor&#34; type definition." href="#h-1691165380">BranchColor</a>
2069                         </span>
2070                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2071                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2072                      <span class="scTag">name</span>="<span class="scContent">node_id</span>" <span class="scTag">type</span>="<span class="scContent">
2073                         <span class="type">
2074                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
2075                         </span>
2076                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2077                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2078                      <span class="scTag">name</span>="<span class="scContent">taxonomy</span>" <span class="scTag">type</span>="<span class="scContent">
2079                         <span class="type">
2080                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Taxonomy&#34; type definition." href="#h888650454">Taxonomy</a>
2081                         </span>
2082                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2083                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2084                      <span class="scTag">name</span>="<span class="scContent">sequence</span>" <span class="scTag">type</span>="<span class="scContent">
2085                         <span class="type">
2086                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Sequence&#34; type definition." href="#h-1794244794">Sequence</a>
2087                         </span>
2088                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2089                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2090                      <span class="scTag">name</span>="<span class="scContent">events</span>" <span class="scTag">type</span>="<span class="scContent">
2091                         <span class="type">
2092                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Events&#34; type definition." href="#h-436501026">Events</a>
2093                         </span>
2094                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2095                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2096                      <span class="scTag">name</span>="<span class="scContent">binary_characters</span>" <span class="scTag">type</span>="<span class="scContent">
2097                         <span class="type">
2098                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;BinaryCharacters&#34; type definition." href="#h-1514309680">BinaryCharacters</a>
2099                         </span>
2100                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2101                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2102                      <span class="scTag">name</span>="<span class="scContent">distribution</span>" <span class="scTag">type</span>="<span class="scContent">
2103                         <span class="type">
2104                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Distribution&#34; type definition." href="#h-979596407">Distribution</a>
2105                         </span>
2106                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2107                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2108                      <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
2109                         <span class="type">
2110                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Date&#34; type definition." href="#h517931443">Date</a>
2111                         </span>
2112                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2113                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2114                      <span class="scTag">name</span>="<span class="scContent">reference</span>" <span class="scTag">type</span>="<span class="scContent">
2115                         <span class="type">
2116                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Reference&#34; type definition." href="#h401516646">Reference</a>
2117                         </span>
2118                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2119                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2120                      <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
2121                         <span class="type">
2122                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
2123                         </span>
2124                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2125                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2126                      <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
2127                         <span class="type">
2128                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
2129                         </span>
2130                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2131                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
2132                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
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2134                   <span class="scTag">name</span>="<span class="scContent">branch_length</span>" <span class="scTag">type</span>="<span class="scContent">
2135                      <span class="type">
2136                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2137                   </span>"/&gt;</div>
2138                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2139                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
2140                      <span class="type">
2141                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
2142                      </span>
2143                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2144          </div>
2145          <script type="text/javascript">
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2148 // -->
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2150       </div>
2151       <div style="text-align: right; clear: both;">
2152          <a href="#top">top</a>
2153       </div>
2154       <hr/>
2155       <h3>Complex Type: <a name="h192331856" class="name">CladeRelation</a>
2156       </h3>
2157       <table class="hierarchy">
2158          <tr>
2159             <th>Super-types:</th>
2160             <td>None</td>
2161          </tr>
2162          <tr>
2163             <th>Sub-types:</th>
2164             <td>None</td>
2165          </tr>
2166       </table>
2167       <table class="properties">
2168          <tr>
2169             <th>Name</th>
2170             <td>CladeRelation</td>
2171          </tr>
2172          <tr>
2173             <th>Used by (from the same schema document)</th>
2174             <td>Complex Type <b>
2175                   <a href="#h535307528">Phylogeny</a>
2176                </b>
2177             </td>
2178          </tr>
2179          <tr>
2180             <th>
2181                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2182             </th>
2183             <td>no</td>
2184          </tr>
2185          <tr>
2186             <th>Documentation</th>
2187             <td class="documentation"> This is used to express a typed relationship between two clades. For example it could be
2188             used to describe multiple parents of a clade.</td>
2189          </tr>
2190       </table>
2191       <div class="sample box">
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2193             <input type="button" id="h192331856_xibox_button" class="control"
2194                    onclick="switchState('h192331856_xibox'); return false;"
2195                    style="display: none"/>
2196             <span class="caption">XML Instance Representation</span>
2197          </div>
2198          <div id="h192331856_xibox" class="contents">
2199             <div style="margin-left: 0em">&lt;...<br/>
2200                <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
2201                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2202                   </span>
2203                   <span class="occurs">[1]</span>"</span>
2204                <br/>
2205                <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
2206                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2207                   </span>
2208                   <span class="occurs">[1]</span>"</span>
2209                <br/>
2210                <span style="margin-left: 0.5em"> distance="<span class="type">
2211                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2212                   <span class="occurs">[0..1]</span>"</span>
2213                <br/>
2214                <span style="margin-left: 0.5em"> type="<span class="type">
2215                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2216                   <span class="occurs">[1]</span>"</span>&gt; <br/>
2217                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
2218                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2219                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
2220                </div>&lt;/...&gt;</div>
2221          </div>
2222          <script type="text/javascript">
2223 <!--
2224           setState('h192331856_xibox', true);
2225 // -->
2226 </script>
2227       </div>
2228       <div class="sample box">
2229          <div>
2230             <input type="button" id="h192331856_diagram_button" class="control"
2231                    onclick="switchState('h192331856_diagram'); return false;"
2232                    style="display: none"/>
2233             <span class="caption">Diagram</span>
2234          </div>
2235          <div id="h192331856_diagram" class="contents">
2236             <img usemap="#h1919634775" src="schemaDiagrams/h1919634775.png"/>
2237             <!--
2238             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1919634775.map--><map name="h1919634775">
2239                <area shape="rect" alt="h-993584945" coords="257,0,383,40"
2240                      href="phyloxml.xsd.html#h-993584945"/>
2241
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2243                      href="phyloxml.xsd.html#h577349652"/>
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2246                      href="phyloxml.xsd.html#h577349652"/>
2247
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2250          <script type="text/javascript">
2251 <!--
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2253 // -->
2254 </script>
2255       </div>
2256       <div class="schemaComponent box">
2257          <div>
2258             <input type="button" id="h192331856_scbox_button" class="control"
2259                    onclick="switchState('h192331856_scbox'); return false;"
2260                    style="display: none"/>
2261             <span class="caption">Schema Component Representation</span>
2262          </div>
2263          <div id="h192331856_scbox" class="contents">
2264             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2265                <span class="scTag">name</span>="<span class="scContent">CladeRelation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2266                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2267                         <span class="type">
2268                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2269                         </span>
2270                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2271                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2272                   <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
2273                      <span class="type">
2274                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2275                      </span>
2276                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2277                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2278                   <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
2279                      <span class="type">
2280                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
2281                      </span>
2282                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
2283                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2284                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
2285                      <span class="type">
2286                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2287                   </span>"/&gt;</div>
2288                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2289                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2290                      <span class="type">
2291                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2292                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2293          </div>
2294          <script type="text/javascript">
2295 <!--
2296           setState('h192331856_scbox', false);
2297 // -->
2298 </script>
2299       </div>
2300       <div style="text-align: right; clear: both;">
2301          <a href="#top">top</a>
2302       </div>
2303       <hr/>
2304       <h3>Complex Type: <a name="h-993584945" class="name">Confidence</a>
2305       </h3>
2306       <table class="hierarchy">
2307          <tr>
2308             <th>Super-types:</th>
2309             <td>
2310                <span class="type">
2311                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span> &lt; <strong>Confidence</strong> (by extension)</td>
2312          </tr>
2313          <tr>
2314             <th>Sub-types:</th>
2315             <td>None</td>
2316          </tr>
2317       </table>
2318       <table class="properties">
2319          <tr>
2320             <th>Name</th>
2321             <td>Confidence</td>
2322          </tr>
2323          <tr>
2324             <th>Used by (from the same schema document)</th>
2325             <td>Complex Type <b>
2326                   <a href="#h535307528">Phylogeny</a>
2327                </b>, Complex Type <b>
2328                   <a href="#h-1124608460">Clade</a>
2329                </b>, Complex Type <b>
2330                   <a href="#h-436501026">Events</a>
2331                </b>, Complex Type <b>
2332                   <a href="#h917087604">Annotation</a>
2333                </b>, Complex Type <b>
2334                   <a href="#h-802965662">SequenceRelation</a>
2335                </b>, Complex Type <b>
2336                   <a href="#h192331856">CladeRelation</a>
2337                </b>
2338             </td>
2339          </tr>
2340          <tr>
2341             <th>
2342                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2343             </th>
2344             <td>no</td>
2345          </tr>
2346          <tr>
2347             <th>Documentation</th>
2348             <td class="documentation"> A general purpose confidence element. For example this can be used to express the bootstrap
2349             support value of a clade (in which case the 'type' attribute is 'bootstrap').</td>
2350          </tr>
2351       </table>
2352       <div class="sample box">
2353          <div>
2354             <input type="button" id="h-993584945_xibox_button" class="control"
2355                    onclick="switchState('h-993584945_xibox'); return false;"
2356                    style="display: none"/>
2357             <span class="caption">XML Instance Representation</span>
2358          </div>
2359          <div id="h-993584945_xibox" class="contents">
2360             <div style="margin-left: 0em">&lt;...<br/>
2361                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
2362                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2363                   <span class="occurs">[1]</span>"</span>&gt; <br/>
2364                <span style="margin-left: 1.5em">
2365                   <span class="type">
2366                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2367                </span>
2368                <br/>&lt;/...&gt;</div>
2369          </div>
2370          <script type="text/javascript">
2371 <!--
2372           setState('h-993584945_xibox', true);
2373 // -->
2374 </script>
2375       </div>
2376       <div class="sample box">
2377          <div>
2378             <input type="button" id="h-993584945_diagram_button" class="control"
2379                    onclick="switchState('h-993584945_diagram'); return false;"
2380                    style="display: none"/>
2381             <span class="caption">Diagram</span>
2382          </div>
2383          <div id="h-993584945_diagram" class="contents">
2384             <img usemap="#h1603897912" src="schemaDiagrams/h1603897912.png"/>
2385             <!--
2386             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1603897912.map--><map name="h1603897912">
2387 </map>
2388          </div>
2389          <script type="text/javascript">
2390 <!--
2391           setState('h-993584945_diagram', true);
2392 // -->
2393 </script>
2394       </div>
2395       <div class="schemaComponent box">
2396          <div>
2397             <input type="button" id="h-993584945_scbox_button" class="control"
2398                    onclick="switchState('h-993584945_scbox'); return false;"
2399                    style="display: none"/>
2400             <span class="caption">Schema Component Representation</span>
2401          </div>
2402          <div id="h-993584945_scbox" class="contents">
2403             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2404                <span class="scTag">name</span>="<span class="scContent">Confidence</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
2405                      <span class="scTag">base</span>="<span class="scContent">
2406                         <span class="type">
2407                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
2408                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2409                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2410                            <span class="type">
2411                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2412                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2413          </div>
2414          <script type="text/javascript">
2415 <!--
2416           setState('h-993584945_scbox', false);
2417 // -->
2418 </script>
2419       </div>
2420       <div style="text-align: right; clear: both;">
2421          <a href="#top">top</a>
2422       </div>
2423       <hr/>
2424       <h3>Complex Type: <a name="h517931443" class="name">Date</a>
2425       </h3>
2426       <table class="hierarchy">
2427          <tr>
2428             <th>Super-types:</th>
2429             <td>None</td>
2430          </tr>
2431          <tr>
2432             <th>Sub-types:</th>
2433             <td>None</td>
2434          </tr>
2435       </table>
2436       <table class="properties">
2437          <tr>
2438             <th>Name</th>
2439             <td>Date</td>
2440          </tr>
2441          <tr>
2442             <th>Used by (from the same schema document)</th>
2443             <td>Complex Type <b>
2444                   <a href="#h-1124608460">Clade</a>
2445                </b>
2446             </td>
2447          </tr>
2448          <tr>
2449             <th>
2450                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2451             </th>
2452             <td>no</td>
2453          </tr>
2454          <tr>
2455             <th>Documentation</th>
2456             <td class="documentation"> A date associated with a clade/node. Its value can be numerical by using the 'value' element
2457             and/or free text with the 'desc' element' (e.g. 'Silurian'). If a numerical value is used, it is recommended
2458             to employ the 'unit' attribute to indicate the type of the numerical value (e.g. 'mya' for 'million years
2459             ago'). The elements 'minimum' and 'maximum' are used the indicate a range/confidence
2460          interval</td>
2461          </tr>
2462       </table>
2463       <div class="sample box">
2464          <div>
2465             <input type="button" id="h517931443_xibox_button" class="control"
2466                    onclick="switchState('h517931443_xibox'); return false;"
2467                    style="display: none"/>
2468             <span class="caption">XML Instance Representation</span>
2469          </div>
2470          <div id="h517931443_xibox" class="contents">
2471             <div style="margin-left: 0em">&lt;...<br/>
2472                <span style="margin-left: 0.5em"> unit="<span class="type">
2473                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2474                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2475                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
2476                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
2477                </div>
2478                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value&gt; <span class="type">
2479                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:value&gt; <span class="occurs">[0..1]</span>
2480                </div>
2481                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:minimum&gt; <span class="type">
2482                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:minimum&gt; <span class="occurs">[0..1]</span>
2483                </div>
2484                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:maximum&gt; <span class="type">
2485                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:maximum&gt; <span class="occurs">[0..1]</span>
2486                </div>&lt;/...&gt;</div>
2487          </div>
2488          <script type="text/javascript">
2489 <!--
2490           setState('h517931443_xibox', true);
2491 // -->
2492 </script>
2493       </div>
2494       <div class="sample box">
2495          <div>
2496             <input type="button" id="h517931443_diagram_button" class="control"
2497                    onclick="switchState('h517931443_diagram'); return false;"
2498                    style="display: none"/>
2499             <span class="caption">Diagram</span>
2500          </div>
2501          <div id="h517931443_diagram" class="contents">
2502             <img usemap="#h169662420" src="schemaDiagrams/h169662420.png"/>
2503             <!--
2504             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h169662420.map--><map name="h169662420">
2505 </map>
2506          </div>
2507          <script type="text/javascript">
2508 <!--
2509           setState('h517931443_diagram', true);
2510 // -->
2511 </script>
2512       </div>
2513       <div class="schemaComponent box">
2514          <div>
2515             <input type="button" id="h517931443_scbox_button" class="control"
2516                    onclick="switchState('h517931443_scbox'); return false;"
2517                    style="display: none"/>
2518             <span class="caption">Schema Component Representation</span>
2519          </div>
2520          <div id="h517931443_scbox" class="contents">
2521             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2522                <span class="scTag">name</span>="<span class="scContent">Date</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2523                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
2524                         <span class="type">
2525                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2526                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2527                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2528                      <span class="scTag">name</span>="<span class="scContent">value</span>" <span class="scTag">type</span>="<span class="scContent">
2529                         <span class="type">
2530                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2531                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2532                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2533                      <span class="scTag">name</span>="<span class="scContent">minimum</span>" <span class="scTag">type</span>="<span class="scContent">
2534                         <span class="type">
2535                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2536                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2537                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2538                      <span class="scTag">name</span>="<span class="scContent">maximum</span>" <span class="scTag">type</span>="<span class="scContent">
2539                         <span class="type">
2540                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
2541                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2542                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2543                   <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
2544                      <span class="type">
2545                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2546                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2547          </div>
2548          <script type="text/javascript">
2549 <!--
2550           setState('h517931443_scbox', false);
2551 // -->
2552 </script>
2553       </div>
2554       <div style="text-align: right; clear: both;">
2555          <a href="#top">top</a>
2556       </div>
2557       <hr/>
2558       <h3>Complex Type: <a name="h-979596407" class="name">Distribution</a>
2559       </h3>
2560       <table class="hierarchy">
2561          <tr>
2562             <th>Super-types:</th>
2563             <td>None</td>
2564          </tr>
2565          <tr>
2566             <th>Sub-types:</th>
2567             <td>None</td>
2568          </tr>
2569       </table>
2570       <table class="properties">
2571          <tr>
2572             <th>Name</th>
2573             <td>Distribution</td>
2574          </tr>
2575          <tr>
2576             <th>Used by (from the same schema document)</th>
2577             <td>Complex Type <b>
2578                   <a href="#h-1124608460">Clade</a>
2579                </b>
2580             </td>
2581          </tr>
2582          <tr>
2583             <th>
2584                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2585             </th>
2586             <td>no</td>
2587          </tr>
2588          <tr>
2589             <th>Documentation</th>
2590             <td class="documentation"> The geographic distribution of the items of a clade (species, sequences), intended for
2591             phylogeographic applications. The location can be described either by free text in the 'desc' element and/or
2592             by the coordinates of one or more 'Points' (similar to the 'Point' element in Google's KML format) or by
2593             'Polygons'. </td>
2594          </tr>
2595       </table>
2596       <div class="sample box">
2597          <div>
2598             <input type="button" id="h-979596407_xibox_button" class="control"
2599                    onclick="switchState('h-979596407_xibox'); return false;"
2600                    style="display: none"/>
2601             <span class="caption">XML Instance Representation</span>
2602          </div>
2603          <div id="h-979596407_xibox" class="contents">
2604             <div style="margin-left: 0em">&lt;...&gt; <br/>
2605                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
2606                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
2607                </div>
2608                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="type">
2609                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
2610                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="occurs">[0..*]</span>
2611                </div>
2612                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:polygon&gt; <span class="type">
2613                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Polygon&#34; type definition." href="#h332351765">Polygon</a>
2614                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:polygon&gt; <span class="occurs">[0..*]</span>
2615                </div>&lt;/...&gt;</div>
2616          </div>
2617          <script type="text/javascript">
2618 <!--
2619           setState('h-979596407_xibox', true);
2620 // -->
2621 </script>
2622       </div>
2623       <div class="sample box">
2624          <div>
2625             <input type="button" id="h-979596407_diagram_button" class="control"
2626                    onclick="switchState('h-979596407_diagram'); return false;"
2627                    style="display: none"/>
2628             <span class="caption">Diagram</span>
2629          </div>
2630          <div id="h-979596407_diagram" class="contents">
2631             <img usemap="#h-265752642" src="schemaDiagrams/h-265752642.png"/>
2632             <!--
2633             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-265752642.map--><map name="h-265752642">
2634                <area shape="rect" alt="h-1112505301" coords="250,50,341,90"
2635                      href="phyloxml.xsd.html#h-1112505301"/>
2636
2637                <area shape="rect" alt="h332351765" coords="250,100,355,140"
2638                      href="phyloxml.xsd.html#h332351765"/>
2639
2640             </map>
2641          </div>
2642          <script type="text/javascript">
2643 <!--
2644           setState('h-979596407_diagram', true);
2645 // -->
2646 </script>
2647       </div>
2648       <div class="schemaComponent box">
2649          <div>
2650             <input type="button" id="h-979596407_scbox_button" class="control"
2651                    onclick="switchState('h-979596407_scbox'); return false;"
2652                    style="display: none"/>
2653             <span class="caption">Schema Component Representation</span>
2654          </div>
2655          <div id="h-979596407_scbox" class="contents">
2656             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2657                <span class="scTag">name</span>="<span class="scContent">Distribution</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2658                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
2659                         <span class="type">
2660                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2661                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2662                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2663                      <span class="scTag">name</span>="<span class="scContent">point</span>" <span class="scTag">type</span>="<span class="scContent">
2664                         <span class="type">
2665                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
2666                         </span>
2667                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
2668                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2669                      <span class="scTag">name</span>="<span class="scContent">polygon</span>" <span class="scTag">type</span>="<span class="scContent">
2670                         <span class="type">
2671                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Polygon&#34; type definition." href="#h332351765">Polygon</a>
2672                         </span>
2673                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2674          </div>
2675          <script type="text/javascript">
2676 <!--
2677           setState('h-979596407_scbox', false);
2678 // -->
2679 </script>
2680       </div>
2681       <div style="text-align: right; clear: both;">
2682          <a href="#top">top</a>
2683       </div>
2684       <hr/>
2685       <h3>Complex Type: <a name="h259010940" class="name">DomainArchitecture</a>
2686       </h3>
2687       <table class="hierarchy">
2688          <tr>
2689             <th>Super-types:</th>
2690             <td>None</td>
2691          </tr>
2692          <tr>
2693             <th>Sub-types:</th>
2694             <td>None</td>
2695          </tr>
2696       </table>
2697       <table class="properties">
2698          <tr>
2699             <th>Name</th>
2700             <td>DomainArchitecture</td>
2701          </tr>
2702          <tr>
2703             <th>Used by (from the same schema document)</th>
2704             <td>Complex Type <b>
2705                   <a href="#h-1794244794">Sequence</a>
2706                </b>
2707             </td>
2708          </tr>
2709          <tr>
2710             <th>
2711                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2712             </th>
2713             <td>no</td>
2714          </tr>
2715          <tr>
2716             <th>Documentation</th>
2717             <td class="documentation"> This is used describe the domain architecture of a protein. Attribute 'length' is the total
2718             length of the protein</td>
2719          </tr>
2720       </table>
2721       <div class="sample box">
2722          <div>
2723             <input type="button" id="h259010940_xibox_button" class="control"
2724                    onclick="switchState('h259010940_xibox'); return false;"
2725                    style="display: none"/>
2726             <span class="caption">XML Instance Representation</span>
2727          </div>
2728          <div id="h259010940_xibox" class="contents">
2729             <div style="margin-left: 0em">&lt;...<br/>
2730                <span style="margin-left: 0.5em"> length="<span class="type">
2731                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2732                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2733                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain&gt; <span class="type">
2734                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ProteinDomain&#34; type definition." href="#h-1389097534">ProteinDomain</a>
2735                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain&gt; <span class="occurs">[1..*]</span>
2736                </div>&lt;/...&gt;</div>
2737          </div>
2738          <script type="text/javascript">
2739 <!--
2740           setState('h259010940_xibox', true);
2741 // -->
2742 </script>
2743       </div>
2744       <div class="sample box">
2745          <div>
2746             <input type="button" id="h259010940_diagram_button" class="control"
2747                    onclick="switchState('h259010940_diagram'); return false;"
2748                    style="display: none"/>
2749             <span class="caption">Diagram</span>
2750          </div>
2751          <div id="h259010940_diagram" class="contents">
2752             <img usemap="#h-93417557" src="schemaDiagrams/h-93417557.png"/>
2753             <!--
2754             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-93417557.map--><map name="h-93417557">
2755                <area shape="rect" alt="h-1389097534" coords="292,0,390,40"
2756                      href="phyloxml.xsd.html#h-1389097534"/>
2757
2758             </map>
2759          </div>
2760          <script type="text/javascript">
2761 <!--
2762           setState('h259010940_diagram', true);
2763 // -->
2764 </script>
2765       </div>
2766       <div class="schemaComponent box">
2767          <div>
2768             <input type="button" id="h259010940_scbox_button" class="control"
2769                    onclick="switchState('h259010940_scbox'); return false;"
2770                    style="display: none"/>
2771             <span class="caption">Schema Component Representation</span>
2772          </div>
2773          <div id="h259010940_scbox" class="contents">
2774             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2775                <span class="scTag">name</span>="<span class="scContent">DomainArchitecture</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2776                      <span class="scTag">name</span>="<span class="scContent">domain</span>" <span class="scTag">type</span>="<span class="scContent">
2777                         <span class="type">
2778                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ProteinDomain&#34; type definition." href="#h-1389097534">ProteinDomain</a>
2779                         </span>
2780                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">1</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
2781                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
2782                   <span class="scTag">name</span>="<span class="scContent">length</span>" <span class="scTag">type</span>="<span class="scContent">
2783                      <span class="type">
2784                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2785                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2786          </div>
2787          <script type="text/javascript">
2788 <!--
2789           setState('h259010940_scbox', false);
2790 // -->
2791 </script>
2792       </div>
2793       <div style="text-align: right; clear: both;">
2794          <a href="#top">top</a>
2795       </div>
2796       <hr/>
2797       <h3>Complex Type: <a name="h-436501026" class="name">Events</a>
2798       </h3>
2799       <table class="hierarchy">
2800          <tr>
2801             <th>Super-types:</th>
2802             <td>None</td>
2803          </tr>
2804          <tr>
2805             <th>Sub-types:</th>
2806             <td>None</td>
2807          </tr>
2808       </table>
2809       <table class="properties">
2810          <tr>
2811             <th>Name</th>
2812             <td>Events</td>
2813          </tr>
2814          <tr>
2815             <th>Used by (from the same schema document)</th>
2816             <td>Complex Type <b>
2817                   <a href="#h-1124608460">Clade</a>
2818                </b>
2819             </td>
2820          </tr>
2821          <tr>
2822             <th>
2823                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2824             </th>
2825             <td>no</td>
2826          </tr>
2827          <tr>
2828             <th>Documentation</th>
2829             <td class="documentation"> Events at the root node of a clade (e.g. one gene duplication). </td>
2830          </tr>
2831       </table>
2832       <div class="sample box">
2833          <div>
2834             <input type="button" id="h-436501026_xibox_button" class="control"
2835                    onclick="switchState('h-436501026_xibox'); return false;"
2836                    style="display: none"/>
2837             <span class="caption">XML Instance Representation</span>
2838          </div>
2839          <div id="h-436501026_xibox" class="contents">
2840             <div style="margin-left: 0em">&lt;...&gt; <br/>
2841                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type&gt; <span class="type">
2842                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;EventType&#34; type definition." href="#h1358103055">EventType</a>
2843                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:type&gt; <span class="occurs">[0..1]</span>
2844                </div>
2845                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications&gt; <span class="type">
2846                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:duplications&gt; <span class="occurs">[0..1]</span>
2847                </div>
2848                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations&gt; <span class="type">
2849                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:speciations&gt; <span class="occurs">[0..1]</span>
2850                </div>
2851                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses&gt; <span class="type">
2852                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:losses&gt; <span class="occurs">[0..1]</span>
2853                </div>
2854                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
2855                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2856                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
2857                </div>&lt;/...&gt;</div>
2858          </div>
2859          <script type="text/javascript">
2860 <!--
2861           setState('h-436501026_xibox', true);
2862 // -->
2863 </script>
2864       </div>
2865       <div class="sample box">
2866          <div>
2867             <input type="button" id="h-436501026_diagram_button" class="control"
2868                    onclick="switchState('h-436501026_diagram'); return false;"
2869                    style="display: none"/>
2870             <span class="caption">Diagram</span>
2871          </div>
2872          <div id="h-436501026_diagram" class="contents">
2873             <img usemap="#h-1724830583" src="schemaDiagrams/h-1724830583.png"/>
2874             <!--
2875             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1724830583.map--><map name="h-1724830583">
2876                <area shape="rect" alt="h1358103055" coords="208,0,292,40"
2877                      href="phyloxml.xsd.html#h1358103055"/>
2878
2879                <area shape="rect" alt="h-993584945" coords="208,200,334,240"
2880                      href="phyloxml.xsd.html#h-993584945"/>
2881
2882             </map>
2883          </div>
2884          <script type="text/javascript">
2885 <!--
2886           setState('h-436501026_diagram', true);
2887 // -->
2888 </script>
2889       </div>
2890       <div class="schemaComponent box">
2891          <div>
2892             <input type="button" id="h-436501026_scbox_button" class="control"
2893                    onclick="switchState('h-436501026_scbox'); return false;"
2894                    style="display: none"/>
2895             <span class="caption">Schema Component Representation</span>
2896          </div>
2897          <div id="h-436501026_scbox" class="contents">
2898             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
2899                <span class="scTag">name</span>="<span class="scContent">Events</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2900                      <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
2901                         <span class="type">
2902                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;EventType&#34; type definition." href="#h1358103055">EventType</a>
2903                         </span>
2904                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2905                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2906                      <span class="scTag">name</span>="<span class="scContent">duplications</span>" <span class="scTag">type</span>="<span class="scContent">
2907                         <span class="type">
2908                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2909                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2910                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2911                      <span class="scTag">name</span>="<span class="scContent">speciations</span>" <span class="scTag">type</span>="<span class="scContent">
2912                         <span class="type">
2913                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2914                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2915                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2916                      <span class="scTag">name</span>="<span class="scContent">losses</span>" <span class="scTag">type</span>="<span class="scContent">
2917                         <span class="type">
2918                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
2919                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
2920                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
2921                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
2922                         <span class="type">
2923                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
2924                         </span>
2925                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
2926          </div>
2927          <script type="text/javascript">
2928 <!--
2929           setState('h-436501026_scbox', false);
2930 // -->
2931 </script>
2932       </div>
2933       <div style="text-align: right; clear: both;">
2934          <a href="#top">top</a>
2935       </div>
2936       <hr/>
2937       <h3>Complex Type: <a name="h-853091232" class="name">Id</a>
2938       </h3>
2939       <table class="hierarchy">
2940          <tr>
2941             <th>Super-types:</th>
2942             <td>
2943                <span class="type">
2944                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Id</strong> (by extension)</td>
2945          </tr>
2946          <tr>
2947             <th>Sub-types:</th>
2948             <td>None</td>
2949          </tr>
2950       </table>
2951       <table class="properties">
2952          <tr>
2953             <th>Name</th>
2954             <td>Id</td>
2955          </tr>
2956          <tr>
2957             <th>Used by (from the same schema document)</th>
2958             <td>Complex Type <b>
2959                   <a href="#h535307528">Phylogeny</a>
2960                </b>, Complex Type <b>
2961                   <a href="#h-1124608460">Clade</a>
2962                </b>, Complex Type <b>
2963                   <a href="#h888650454">Taxonomy</a>
2964                </b>
2965             </td>
2966          </tr>
2967          <tr>
2968             <th>
2969                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
2970             </th>
2971             <td>no</td>
2972          </tr>
2973          <tr>
2974             <th>Documentation</th>
2975             <td class="documentation"> A general purpose identifier element. Allows to indicate the provider (or authority) of an
2976             identifier. </td>
2977          </tr>
2978       </table>
2979       <div class="sample box">
2980          <div>
2981             <input type="button" id="h-853091232_xibox_button" class="control"
2982                    onclick="switchState('h-853091232_xibox'); return false;"
2983                    style="display: none"/>
2984             <span class="caption">XML Instance Representation</span>
2985          </div>
2986          <div id="h-853091232_xibox" class="contents">
2987             <div style="margin-left: 0em">&lt;...<br/>
2988                <span style="margin-left: 0.5em" class="newFields"> provider="<span class="type">
2989                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2990                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
2991                <span style="margin-left: 1.5em">
2992                   <span class="type">
2993                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
2994                </span>
2995                <br/>&lt;/...&gt;</div>
2996          </div>
2997          <script type="text/javascript">
2998 <!--
2999           setState('h-853091232_xibox', true);
3000 // -->
3001 </script>
3002       </div>
3003       <div class="sample box">
3004          <div>
3005             <input type="button" id="h-853091232_diagram_button" class="control"
3006                    onclick="switchState('h-853091232_diagram'); return false;"
3007                    style="display: none"/>
3008             <span class="caption">Diagram</span>
3009          </div>
3010          <div id="h-853091232_diagram" class="contents">
3011             <img usemap="#h-1484760249" src="schemaDiagrams/h-1484760249.png"/>
3012             <!--
3013             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1484760249.map--><map name="h-1484760249">
3014 </map>
3015          </div>
3016          <script type="text/javascript">
3017 <!--
3018           setState('h-853091232_diagram', true);
3019 // -->
3020 </script>
3021       </div>
3022       <div class="schemaComponent box">
3023          <div>
3024             <input type="button" id="h-853091232_scbox_button" class="control"
3025                    onclick="switchState('h-853091232_scbox'); return false;"
3026                    style="display: none"/>
3027             <span class="caption">Schema Component Representation</span>
3028          </div>
3029          <div id="h-853091232_scbox" class="contents">
3030             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3031                <span class="scTag">name</span>="<span class="scContent">Id</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
3032                      <span class="scTag">base</span>="<span class="scContent">
3033                         <span class="type">
3034                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3035                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3036                         <span class="scTag">name</span>="<span class="scContent">provider</span>" <span class="scTag">type</span>="<span class="scContent">
3037                            <span class="type">
3038                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3039                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3040          </div>
3041          <script type="text/javascript">
3042 <!--
3043           setState('h-853091232_scbox', false);
3044 // -->
3045 </script>
3046       </div>
3047       <div style="text-align: right; clear: both;">
3048          <a href="#top">top</a>
3049       </div>
3050       <hr/>
3051       <h3>Complex Type: <a name="h-213750342" class="name">MolSeq</a>
3052       </h3>
3053       <table class="hierarchy">
3054          <tr>
3055             <th>Super-types:</th>
3056             <td>
3057                <span class="type">
3058                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>MolSeq</strong> (by extension)</td>
3059          </tr>
3060          <tr>
3061             <th>Sub-types:</th>
3062             <td>None</td>
3063          </tr>
3064       </table>
3065       <table class="properties">
3066          <tr>
3067             <th>Name</th>
3068             <td>MolSeq</td>
3069          </tr>
3070          <tr>
3071             <th>Used by (from the same schema document)</th>
3072             <td>Complex Type <b>
3073                   <a href="#h-1794244794">Sequence</a>
3074                </b>
3075             </td>
3076          </tr>
3077          <tr>
3078             <th>
3079                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3080             </th>
3081             <td>no</td>
3082          </tr>
3083          <tr>
3084             <th>Documentation</th>
3085             <td class="documentation"> Element 'mol_seq' is used to store molecular sequences. The 'is_aligned' attribute is used
3086             to indicated that this molecular sequence is aligned with all other sequences in the same phylogeny for
3087             which 'is aligned' is true as well (which, in most cases, means that gaps were introduced, and that all
3088             sequences for which 'is aligned' is true must have the same length).</td>
3089          </tr>
3090       </table>
3091       <div class="sample box">
3092          <div>
3093             <input type="button" id="h-213750342_xibox_button" class="control"
3094                    onclick="switchState('h-213750342_xibox'); return false;"
3095                    style="display: none"/>
3096             <span class="caption">XML Instance Representation</span>
3097          </div>
3098          <div id="h-213750342_xibox" class="contents">
3099             <div style="margin-left: 0em">&lt;...<br/>
3100                <span style="margin-left: 0.5em" class="newFields"> is_aligned="<span class="type">
3101                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3102                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3103                <span style="margin-left: 1.5em">
3104                   <span class="type">
3105                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3106                </span>
3107                <br/>&lt;/...&gt;</div>
3108          </div>
3109          <script type="text/javascript">
3110 <!--
3111           setState('h-213750342_xibox', true);
3112 // -->
3113 </script>
3114       </div>
3115       <div class="sample box">
3116          <div>
3117             <input type="button" id="h-213750342_diagram_button" class="control"
3118                    onclick="switchState('h-213750342_diagram'); return false;"
3119                    style="display: none"/>
3120             <span class="caption">Diagram</span>
3121          </div>
3122          <div id="h-213750342_diagram" class="contents">
3123             <img usemap="#h-100858323" src="schemaDiagrams/h-100858323.png"/>
3124             <!--
3125             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-100858323.map--><map name="h-100858323">
3126 </map>
3127          </div>
3128          <script type="text/javascript">
3129 <!--
3130           setState('h-213750342_diagram', true);
3131 // -->
3132 </script>
3133       </div>
3134       <div class="schemaComponent box">
3135          <div>
3136             <input type="button" id="h-213750342_scbox_button" class="control"
3137                    onclick="switchState('h-213750342_scbox'); return false;"
3138                    style="display: none"/>
3139             <span class="caption">Schema Component Representation</span>
3140          </div>
3141          <div id="h-213750342_scbox" class="contents">
3142             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3143                <span class="scTag">name</span>="<span class="scContent">MolSeq</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
3144                      <span class="scTag">base</span>="<span class="scContent">
3145                         <span class="type">
3146                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3147                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3148                         <span class="scTag">name</span>="<span class="scContent">is_aligned</span>" <span class="scTag">type</span>="<span class="scContent">
3149                            <span class="type">
3150                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3151                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3152          </div>
3153          <script type="text/javascript">
3154 <!--
3155           setState('h-213750342_scbox', false);
3156 // -->
3157 </script>
3158       </div>
3159       <div style="text-align: right; clear: both;">
3160          <a href="#top">top</a>
3161       </div>
3162       <hr/>
3163       <h3>Complex Type: <a name="h535307528" class="name">Phylogeny</a>
3164       </h3>
3165       <table class="hierarchy">
3166          <tr>
3167             <th>Super-types:</th>
3168             <td>None</td>
3169          </tr>
3170          <tr>
3171             <th>Sub-types:</th>
3172             <td>None</td>
3173          </tr>
3174       </table>
3175       <table class="properties">
3176          <tr>
3177             <th>Name</th>
3178             <td>Phylogeny</td>
3179          </tr>
3180          <tr>
3181             <th>Used by (from the same schema document)</th>
3182             <td>Complex Type <b>
3183                   <a href="#h155831896">Phyloxml</a>
3184                </b>
3185             </td>
3186          </tr>
3187          <tr>
3188             <th>
3189                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3190             </th>
3191             <td>no</td>
3192          </tr>
3193          <tr>
3194             <th>Documentation</th>
3195             <td class="documentation"> Element Phylogeny is used to represent a phylogeny. The required attribute 'rooted' is used
3196             to indicate whether the phylogeny is rooted or not. The attribute 'rerootable' can be used to indicate that
3197             the phylogeny is not allowed to be rooted differently (i.e. because it is associated with root dependent
3198             data, such as gene duplications). The attribute 'type' can be used to indicate the type of phylogeny (i.e.
3199             'gene tree'). It is recommended to use the attribute 'branch_length_unit' if the phylogeny has branch
3200             lengths. Element clade is used in a recursive manner to describe the topology of a phylogenetic
3201          tree.</td>
3202          </tr>
3203       </table>
3204       <div class="sample box">
3205          <div>
3206             <input type="button" id="h535307528_xibox_button" class="control"
3207                    onclick="switchState('h535307528_xibox'); return false;"
3208                    style="display: none"/>
3209             <span class="caption">XML Instance Representation</span>
3210          </div>
3211          <div id="h535307528_xibox" class="contents">
3212             <div style="margin-left: 0em">&lt;...<br/>
3213                <span style="margin-left: 0.5em"> rooted="<span class="type">
3214                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3215                   <span class="occurs">[1]</span>"</span>
3216                <br/>
3217                <span style="margin-left: 0.5em"> rerootable="<span class="type">
3218                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3219                   <span class="occurs">[0..1]</span>"</span>
3220                <br/>
3221                <span style="margin-left: 0.5em"> branch_length_unit="<span class="type">
3222                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3223                   <span class="occurs">[0..1]</span>"</span>
3224                <br/>
3225                <span style="margin-left: 0.5em"> type="<span class="type">
3226                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3227                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3228                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
3229                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
3230                </div>
3231                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
3232                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3233                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
3234                </div>
3235                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description&gt; <span class="type">
3236                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:description&gt; <span class="occurs">[0..1]</span>
3237                </div>
3238                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="type">
3239                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:date&gt; <span class="occurs">[0..1]</span>
3240                </div>
3241                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
3242                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
3243                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..*]</span>
3244                </div>
3245                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="type">
3246                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
3247                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade&gt; <span class="occurs">[0..1]</span>
3248                </div>
3249                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation&gt; <span class="type">
3250                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CladeRelation&#34; type definition." href="#h192331856">CladeRelation</a>
3251                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:clade_relation&gt; <span class="occurs">[0..*]</span>
3252                </div>
3253                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation&gt; <span class="type">
3254                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelation&#34; type definition." href="#h-802965662">SequenceRelation</a>
3255                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:sequence_relation&gt; <span class="occurs">[0..*]</span>
3256                </div>
3257                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="type">
3258                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
3259                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:property&gt; <span class="occurs">[0..*]</span>
3260                </div>
3261                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3262                </div>&lt;/...&gt;</div>
3263          </div>
3264          <script type="text/javascript">
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3275             <span class="caption">Diagram</span>
3276          </div>
3277          <div id="h535307528_diagram" class="contents">
3278             <img usemap="#h731810719" src="schemaDiagrams/h731810719.png"/>
3279             <!--
3280             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h731810719.map--><map name="h731810719">
3281                <area shape="rect" alt="h-853091232" coords="229,50,305,90"
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3302 <!--
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3306       </div>
3307       <div class="schemaComponent box">
3308          <div>
3309             <input type="button" id="h535307528_scbox_button" class="control"
3310                    onclick="switchState('h535307528_scbox'); return false;"
3311                    style="display: none"/>
3312             <span class="caption">Schema Component Representation</span>
3313          </div>
3314          <div id="h535307528_scbox" class="contents">
3315             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3316                <span class="scTag">name</span>="<span class="scContent">Phylogeny</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3317                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
3318                         <span class="type">
3319                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3320                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3321                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3322                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
3323                         <span class="type">
3324                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
3325                         </span>
3326                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3327                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3328                      <span class="scTag">name</span>="<span class="scContent">description</span>" <span class="scTag">type</span>="<span class="scContent">
3329                         <span class="type">
3330                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3331                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3332                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3333                      <span class="scTag">name</span>="<span class="scContent">date</span>" <span class="scTag">type</span>="<span class="scContent">
3334                         <span class="type">
3335                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:dateTime</span>
3336                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3337                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3338                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
3339                         <span class="type">
3340                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
3341                         </span>
3342                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3343                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3344                      <span class="scTag">name</span>="<span class="scContent">clade</span>" <span class="scTag">type</span>="<span class="scContent">
3345                         <span class="type">
3346                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Clade&#34; type definition." href="#h-1124608460">Clade</a>
3347                         </span>
3348                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
3349                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3350                      <span class="scTag">name</span>="<span class="scContent">clade_relation</span>" <span class="scTag">type</span>="<span class="scContent">
3351                         <span class="type">
3352                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;CladeRelation&#34; type definition." href="#h192331856">CladeRelation</a>
3353                         </span>
3354                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3355                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3356                      <span class="scTag">name</span>="<span class="scContent">sequence_relation</span>" <span class="scTag">type</span>="<span class="scContent">
3357                         <span class="type">
3358                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelation&#34; type definition." href="#h-802965662">SequenceRelation</a>
3359                         </span>
3360                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3361                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3362                      <span class="scTag">name</span>="<span class="scContent">property</span>" <span class="scTag">type</span>="<span class="scContent">
3363                         <span class="type">
3364                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Property&#34; type definition." href="#h158033242">Property</a>
3365                         </span>
3366                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
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3368                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3369                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3370                   <span class="scTag">name</span>="<span class="scContent">rooted</span>" <span class="scTag">type</span>="<span class="scContent">
3371                      <span class="type">
3372                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3373                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3374                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
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3376                      <span class="type">
3377                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:boolean</span>
3378                   </span>"/&gt;</div>
3379                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3380                   <span class="scTag">name</span>="<span class="scContent">branch_length_unit</span>" <span class="scTag">type</span>="<span class="scContent">
3381                      <span class="type">
3382                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3383                   </span>"/&gt;</div>
3384                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3385                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
3386                      <span class="type">
3387                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3388                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3389          </div>
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3395       </div>
3396       <div style="text-align: right; clear: both;">
3397          <a href="#top">top</a>
3398       </div>
3399       <hr/>
3400       <h3>Complex Type: <a name="h155831896" class="name">Phyloxml</a>
3401       </h3>
3402       <table class="hierarchy">
3403          <tr>
3404             <th>Super-types:</th>
3405             <td>None</td>
3406          </tr>
3407          <tr>
3408             <th>Sub-types:</th>
3409             <td>None</td>
3410          </tr>
3411       </table>
3412       <table class="properties">
3413          <tr>
3414             <th>Name</th>
3415             <td>Phyloxml</td>
3416          </tr>
3417          <tr>
3418             <th>Used by (from the same schema document)</th>
3419             <td>Element <b>
3420                   <a href="#h270234806">phyloxml</a>
3421                </b>
3422             </td>
3423          </tr>
3424          <tr>
3425             <th>
3426                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3427             </th>
3428             <td>no</td>
3429          </tr>
3430          <tr>
3431             <th>Documentation</th>
3432             <td class="documentation"> 'phyloxml' is the name of the root element. Phyloxml contains an arbitrary number of
3433             'phylogeny' elements (each representing one phylogeny) possibly followed by elements from other namespaces.
3434          </td>
3435          </tr>
3436       </table>
3437       <div class="sample box">
3438          <div>
3439             <input type="button" id="h155831896_xibox_button" class="control"
3440                    onclick="switchState('h155831896_xibox'); return false;"
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3442             <span class="caption">XML Instance Representation</span>
3443          </div>
3444          <div id="h155831896_xibox" class="contents">
3445             <div style="margin-left: 0em">&lt;...&gt; <br/>
3446                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Sequence' in glossary" href="phyloxml.xsd.html#term_Sequence">Sequence</a>
3447                   <span class="occurs">[1..*]</span>
3448                </span>
3449                <br/>
3450                <div style="margin-left: 3em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="type">
3451                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
3452                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:phylogeny&gt; <span class="occurs">[0..*]</span>
3453                </div>
3454                <div class="other" style="margin-left: 3em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
3455                </div>
3456                <span class="group" style="margin-left: 1.5em">End Sequence</span>
3457                <br/>&lt;/...&gt;</div>
3458          </div>
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3468                    onclick="switchState('h155831896_diagram'); return false;"
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3470             <span class="caption">Diagram</span>
3471          </div>
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3486       </div>
3487       <div class="schemaComponent box">
3488          <div>
3489             <input type="button" id="h155831896_scbox_button" class="control"
3490                    onclick="switchState('h155831896_scbox'); return false;"
3491                    style="display: none"/>
3492             <span class="caption">Schema Component Representation</span>
3493          </div>
3494          <div id="h155831896_scbox" class="contents">
3495             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3496                <span class="scTag">name</span>="<span class="scContent">Phyloxml</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>
3497                   <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3498                      <span class="scTag">name</span>="<span class="scContent">phylogeny</span>" <span class="scTag">type</span>="<span class="scContent">
3499                         <span class="type">
3500                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Phylogeny&#34; type definition." href="#h535307528">Phylogeny</a>
3501                         </span>
3502                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
3503                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
3504                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3505          </div>
3506          <script type="text/javascript">
3507 <!--
3508           setState('h155831896_scbox', false);
3509 // -->
3510 </script>
3511       </div>
3512       <div style="text-align: right; clear: both;">
3513          <a href="#top">top</a>
3514       </div>
3515       <hr/>
3516       <h3>Complex Type: <a name="h-1112505301" class="name">Point</a>
3517       </h3>
3518       <table class="hierarchy">
3519          <tr>
3520             <th>Super-types:</th>
3521             <td>None</td>
3522          </tr>
3523          <tr>
3524             <th>Sub-types:</th>
3525             <td>None</td>
3526          </tr>
3527       </table>
3528       <table class="properties">
3529          <tr>
3530             <th>Name</th>
3531             <td>Point</td>
3532          </tr>
3533          <tr>
3534             <th>Used by (from the same schema document)</th>
3535             <td>Complex Type <b>
3536                   <a href="#h-979596407">Distribution</a>
3537                </b>, Complex Type <b>
3538                   <a href="#h332351765">Polygon</a>
3539                </b>
3540             </td>
3541          </tr>
3542          <tr>
3543             <th>
3544                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3545             </th>
3546             <td>no</td>
3547          </tr>
3548          <tr>
3549             <th>Documentation</th>
3550             <td class="documentation"> The coordinates of a point with an optional altitude (used by element 'Distribution').
3551             Required attributes are the 'geodetic_datum' used to indicate the geodetic datum (also called 'map datum',
3552             for example Google's KML uses 'WGS84'). Attribute 'alt_unit' is the unit for the altitude (e.g. 'meter').
3553          </td>
3554          </tr>
3555       </table>
3556       <div class="sample box">
3557          <div>
3558             <input type="button" id="h-1112505301_xibox_button" class="control"
3559                    onclick="switchState('h-1112505301_xibox'); return false;"
3560                    style="display: none"/>
3561             <span class="caption">XML Instance Representation</span>
3562          </div>
3563          <div id="h-1112505301_xibox" class="contents">
3564             <div style="margin-left: 0em">&lt;...<br/>
3565                <span style="margin-left: 0.5em"> geodetic_datum="<span class="type">
3566                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3567                   <span class="occurs">[1]</span>"</span>
3568                <br/>
3569                <span style="margin-left: 0.5em"> alt_unit="<span class="type">
3570                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3571                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3572                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lat&gt; <span class="type">
3573                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:lat&gt; <span class="occurs">[1]</span>
3574                </div>
3575                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:long&gt; <span class="type">
3576                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:long&gt; <span class="occurs">[1]</span>
3577                </div>
3578                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:alt&gt; <span class="type">
3579                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:alt&gt; <span class="occurs">[0..1]</span>
3580                </div>&lt;/...&gt;</div>
3581          </div>
3582          <script type="text/javascript">
3583 <!--
3584           setState('h-1112505301_xibox', true);
3585 // -->
3586 </script>
3587       </div>
3588       <div class="sample box">
3589          <div>
3590             <input type="button" id="h-1112505301_diagram_button" class="control"
3591                    onclick="switchState('h-1112505301_diagram'); return false;"
3592                    style="display: none"/>
3593             <span class="caption">Diagram</span>
3594          </div>
3595          <div id="h-1112505301_diagram" class="contents">
3596             <img usemap="#h2137002076" src="schemaDiagrams/h2137002076.png"/>
3597             <!--
3598             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h2137002076.map--><map name="h2137002076">
3599 </map>
3600          </div>
3601          <script type="text/javascript">
3602 <!--
3603           setState('h-1112505301_diagram', true);
3604 // -->
3605 </script>
3606       </div>
3607       <div class="schemaComponent box">
3608          <div>
3609             <input type="button" id="h-1112505301_scbox_button" class="control"
3610                    onclick="switchState('h-1112505301_scbox'); return false;"
3611                    style="display: none"/>
3612             <span class="caption">Schema Component Representation</span>
3613          </div>
3614          <div id="h-1112505301_scbox" class="contents">
3615             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3616                <span class="scTag">name</span>="<span class="scContent">Point</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3617                      <span class="scTag">name</span>="<span class="scContent">lat</span>" <span class="scTag">type</span>="<span class="scContent">
3618                         <span class="type">
3619                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3620                      </span>"/&gt;</div>
3621                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3622                      <span class="scTag">name</span>="<span class="scContent">long</span>" <span class="scTag">type</span>="<span class="scContent">
3623                         <span class="type">
3624                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3625                      </span>"/&gt;</div>
3626                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3627                      <span class="scTag">name</span>="<span class="scContent">alt</span>" <span class="scTag">type</span>="<span class="scContent">
3628                         <span class="type">
3629                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:decimal</span>
3630                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
3631                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3632                   <span class="scTag">name</span>="<span class="scContent">geodetic_datum</span>" <span class="scTag">type</span>="<span class="scContent">
3633                      <span class="type">
3634                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3635                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3636                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3637                   <span class="scTag">name</span>="<span class="scContent">alt_unit</span>" <span class="scTag">type</span>="<span class="scContent">
3638                      <span class="type">
3639                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3640                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3641          </div>
3642          <script type="text/javascript">
3643 <!--
3644           setState('h-1112505301_scbox', false);
3645 // -->
3646 </script>
3647       </div>
3648       <div style="text-align: right; clear: both;">
3649          <a href="#top">top</a>
3650       </div>
3651       <hr/>
3652       <h3>Complex Type: <a name="h332351765" class="name">Polygon</a>
3653       </h3>
3654       <table class="hierarchy">
3655          <tr>
3656             <th>Super-types:</th>
3657             <td>None</td>
3658          </tr>
3659          <tr>
3660             <th>Sub-types:</th>
3661             <td>None</td>
3662          </tr>
3663       </table>
3664       <table class="properties">
3665          <tr>
3666             <th>Name</th>
3667             <td>Polygon</td>
3668          </tr>
3669          <tr>
3670             <th>Used by (from the same schema document)</th>
3671             <td>Complex Type <b>
3672                   <a href="#h-979596407">Distribution</a>
3673                </b>
3674             </td>
3675          </tr>
3676          <tr>
3677             <th>
3678                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3679             </th>
3680             <td>no</td>
3681          </tr>
3682          <tr>
3683             <th>Documentation</th>
3684             <td class="documentation"> A polygon defined by a list of 'Points' (used by element 'Distribution').
3685          </td>
3686          </tr>
3687       </table>
3688       <div class="sample box">
3689          <div>
3690             <input type="button" id="h332351765_xibox_button" class="control"
3691                    onclick="switchState('h332351765_xibox'); return false;"
3692                    style="display: none"/>
3693             <span class="caption">XML Instance Representation</span>
3694          </div>
3695          <div id="h332351765_xibox" class="contents">
3696             <div style="margin-left: 0em">&lt;...&gt; <br/>
3697                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="type">
3698                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
3699                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:point&gt; <span class="occurs">[3..*]</span>
3700                </div>&lt;/...&gt;</div>
3701          </div>
3702          <script type="text/javascript">
3703 <!--
3704           setState('h332351765_xibox', true);
3705 // -->
3706 </script>
3707       </div>
3708       <div class="sample box">
3709          <div>
3710             <input type="button" id="h332351765_diagram_button" class="control"
3711                    onclick="switchState('h332351765_diagram'); return false;"
3712                    style="display: none"/>
3713             <span class="caption">Diagram</span>
3714          </div>
3715          <div id="h332351765_diagram" class="contents">
3716             <img usemap="#h555770290" src="schemaDiagrams/h555770290.png"/>
3717             <!--
3718             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h555770290.map--><map name="h555770290">
3719                <area shape="rect" alt="h-1112505301" coords="215,0,306,40"
3720                      href="phyloxml.xsd.html#h-1112505301"/>
3721
3722             </map>
3723          </div>
3724          <script type="text/javascript">
3725 <!--
3726           setState('h332351765_diagram', true);
3727 // -->
3728 </script>
3729       </div>
3730       <div class="schemaComponent box">
3731          <div>
3732             <input type="button" id="h332351765_scbox_button" class="control"
3733                    onclick="switchState('h332351765_scbox'); return false;"
3734                    style="display: none"/>
3735             <span class="caption">Schema Component Representation</span>
3736          </div>
3737          <div id="h332351765_scbox" class="contents">
3738             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3739                <span class="scTag">name</span>="<span class="scContent">Polygon</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
3740                      <span class="scTag">name</span>="<span class="scContent">point</span>" <span class="scTag">type</span>="<span class="scContent">
3741                         <span class="type">
3742                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Point&#34; type definition." href="#h-1112505301">Point</a>
3743                         </span>
3744                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">3</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3745          </div>
3746          <script type="text/javascript">
3747 <!--
3748           setState('h332351765_scbox', false);
3749 // -->
3750 </script>
3751       </div>
3752       <div style="text-align: right; clear: both;">
3753          <a href="#top">top</a>
3754       </div>
3755       <hr/>
3756       <h3>Complex Type: <a name="h158033242" class="name">Property</a>
3757       </h3>
3758       <table class="hierarchy">
3759          <tr>
3760             <th>Super-types:</th>
3761             <td>None</td>
3762          </tr>
3763          <tr>
3764             <th>Sub-types:</th>
3765             <td>None</td>
3766          </tr>
3767       </table>
3768       <table class="properties">
3769          <tr>
3770             <th>Name</th>
3771             <td>Property</td>
3772          </tr>
3773          <tr>
3774             <th>Used by (from the same schema document)</th>
3775             <td>Complex Type <b>
3776                   <a href="#h535307528">Phylogeny</a>
3777                </b>, Complex Type <b>
3778                   <a href="#h-1124608460">Clade</a>
3779                </b>, Complex Type <b>
3780                   <a href="#h917087604">Annotation</a>
3781                </b>
3782             </td>
3783          </tr>
3784          <tr>
3785             <th>
3786                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3787             </th>
3788             <td>no</td>
3789          </tr>
3790          <tr>
3791             <th>Documentation</th>
3792             <td class="documentation"> Property allows for typed and referenced properties from external resources to be attached
3793             to 'Phylogeny', 'Clade', and 'Annotation'. The value of a property is its mixed (free text) content.
3794             Attribute 'datatype' indicates the type of a property and is limited to xsd-datatypes (e.g. 'xsd:string',
3795             'xsd:boolean', 'xsd:integer', 'xsd:decimal', 'xsd:float', 'xsd:double', 'xsd:date', 'xsd:anyURI'). Attribute
3796             'applies_to' indicates the item to which a property applies to (e.g. 'node' for the parent node of a clade,
3797             'parent_branch' for the parent branch of a clade). Attribute 'id_ref' allows to attached a property
3798             specifically to one element (on the xml-level). Optional attribute 'unit' is used to indicate the unit of
3799             the property. An example: &lt;property datatype="xsd:integer" ref="NOAA:depth" applies_to="clade"
3800             unit="METRIC:m"&gt; 200 &lt;/property&gt; </td>
3801          </tr>
3802       </table>
3803       <div class="sample box">
3804          <div>
3805             <input type="button" id="h158033242_xibox_button" class="control"
3806                    onclick="switchState('h158033242_xibox'); return false;"
3807                    style="display: none"/>
3808             <span class="caption">XML Instance Representation</span>
3809          </div>
3810          <div id="h158033242_xibox" class="contents">
3811             <div style="margin-left: 0em">&lt;...<br/>
3812                <span style="margin-left: 0.5em"> ref="<span class="type">
3813                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3814                   </span>
3815                   <span class="occurs">[1]</span>"</span>
3816                <br/>
3817                <span style="margin-left: 0.5em"> unit="<span class="type">
3818                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3819                   </span>
3820                   <span class="occurs">[0..1]</span>"</span>
3821                <br/>
3822                <span style="margin-left: 0.5em"> datatype="<span class="type">
3823                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;PropertyDataType&#34; type definition." href="#h-54338178">PropertyDataType</a>
3824                   </span>
3825                   <span class="occurs">[1]</span>"</span>
3826                <br/>
3827                <span style="margin-left: 0.5em"> applies_to="<span class="type">
3828                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;AppliesTo&#34; type definition." href="#h-763252414">AppliesTo</a>
3829                   </span>
3830                   <span class="occurs">[1]</span>"</span>
3831                <br/>
3832                <span style="margin-left: 0.5em"> id_ref="<span class="type">
3833                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3834                   </span>
3835                   <span class="occurs">[0..1]</span>"</span>/&gt; </div>
3836          </div>
3837          <script type="text/javascript">
3838 <!--
3839           setState('h158033242_xibox', true);
3840 // -->
3841 </script>
3842       </div>
3843       <div class="sample box">
3844          <div>
3845             <input type="button" id="h158033242_diagram_button" class="control"
3846                    onclick="switchState('h158033242_diagram'); return false;"
3847                    style="display: none"/>
3848             <span class="caption">Diagram</span>
3849          </div>
3850          <div id="h158033242_diagram" class="contents">
3851             <img usemap="#h-411495795" src="schemaDiagrams/h-411495795.png"/>
3852             <!--
3853             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-411495795.map--><map name="h-411495795">
3854                <area shape="rect" alt="h-675984882" coords="136,0,231,26"
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3856
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3859
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3862
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3864                      href="phyloxml.xsd.html#h-763252414"/>
3865
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3867                      href="phyloxml.xsd.html#h577349652"/>
3868
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3870          </div>
3871          <script type="text/javascript">
3872 <!--
3873           setState('h158033242_diagram', true);
3874 // -->
3875 </script>
3876       </div>
3877       <div class="schemaComponent box">
3878          <div>
3879             <input type="button" id="h158033242_scbox_button" class="control"
3880                    onclick="switchState('h158033242_scbox'); return false;"
3881                    style="display: none"/>
3882             <span class="caption">Schema Component Representation</span>
3883          </div>
3884          <div id="h158033242_scbox" class="contents">
3885             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
3886                <span class="scTag">name</span>="<span class="scContent">Property</span>" <span class="scTag">mixed</span>="<span class="scContent">true</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3887                   <span class="scTag">name</span>="<span class="scContent">ref</span>" <span class="scTag">type</span>="<span class="scContent">
3888                      <span class="type">
3889                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3890                      </span>
3891                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3892                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3893                   <span class="scTag">name</span>="<span class="scContent">unit</span>" <span class="scTag">type</span>="<span class="scContent">
3894                      <span class="type">
3895                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;ref&#34; type definition." href="#h-675984882">ref</a>
3896                      </span>
3897                   </span>"/&gt;</div>
3898                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3899                   <span class="scTag">name</span>="<span class="scContent">datatype</span>" <span class="scTag">type</span>="<span class="scContent">
3900                      <span class="type">
3901                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;PropertyDataType&#34; type definition." href="#h-54338178">PropertyDataType</a>
3902                      </span>
3903                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3904                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3905                   <span class="scTag">name</span>="<span class="scContent">applies_to</span>" <span class="scTag">type</span>="<span class="scContent">
3906                      <span class="type">
3907                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;AppliesTo&#34; type definition." href="#h-763252414">AppliesTo</a>
3908                      </span>
3909                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
3910                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
3911                   <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
3912                      <span class="type">
3913                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
3914                      </span>
3915                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
3916          </div>
3917          <script type="text/javascript">
3918 <!--
3919           setState('h158033242_scbox', false);
3920 // -->
3921 </script>
3922       </div>
3923       <div style="text-align: right; clear: both;">
3924          <a href="#top">top</a>
3925       </div>
3926       <hr/>
3927       <h3>Complex Type: <a name="h-1389097534" class="name">ProteinDomain</a>
3928       </h3>
3929       <table class="hierarchy">
3930          <tr>
3931             <th>Super-types:</th>
3932             <td>
3933                <span class="type">
3934                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>ProteinDomain</strong> (by extension)</td>
3935          </tr>
3936          <tr>
3937             <th>Sub-types:</th>
3938             <td>None</td>
3939          </tr>
3940       </table>
3941       <table class="properties">
3942          <tr>
3943             <th>Name</th>
3944             <td>ProteinDomain</td>
3945          </tr>
3946          <tr>
3947             <th>Used by (from the same schema document)</th>
3948             <td>Complex Type <b>
3949                   <a href="#h259010940">DomainArchitecture</a>
3950                </b>
3951             </td>
3952          </tr>
3953          <tr>
3954             <th>
3955                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
3956             </th>
3957             <td>no</td>
3958          </tr>
3959          <tr>
3960             <th>Documentation</th>
3961             <td class="documentation"> To represent an individual domain in a domain architecture. The name/unique identifier is
3962             described via the 'id' attribute. 'confidence' can be used to store (i.e.) E-values.</td>
3963          </tr>
3964       </table>
3965       <div class="sample box">
3966          <div>
3967             <input type="button" id="h-1389097534_xibox_button" class="control"
3968                    onclick="switchState('h-1389097534_xibox'); return false;"
3969                    style="display: none"/>
3970             <span class="caption">XML Instance Representation</span>
3971          </div>
3972          <div id="h-1389097534_xibox" class="contents">
3973             <div style="margin-left: 0em">&lt;...<br/>
3974                <span style="margin-left: 0.5em" class="newFields"> from="<span class="type">
3975                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3976                   <span class="occurs">[1]</span>"</span>
3977                <br/>
3978                <span style="margin-left: 0.5em" class="newFields"> to="<span class="type">
3979                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
3980                   <span class="occurs">[1]</span>"</span>
3981                <br/>
3982                <span style="margin-left: 0.5em" class="newFields"> confidence="<span class="type">
3983                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
3984                   <span class="occurs">[0..1]</span>"</span>
3985                <br/>
3986                <span style="margin-left: 0.5em" class="newFields"> id="<span class="type">
3987                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3988                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
3989                <span style="margin-left: 1.5em">
3990                   <span class="type">
3991                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
3992                </span>
3993                <br/>&lt;/...&gt;</div>
3994          </div>
3995          <script type="text/javascript">
3996 <!--
3997           setState('h-1389097534_xibox', true);
3998 // -->
3999 </script>
4000       </div>
4001       <div class="sample box">
4002          <div>
4003             <input type="button" id="h-1389097534_diagram_button" class="control"
4004                    onclick="switchState('h-1389097534_diagram'); return false;"
4005                    style="display: none"/>
4006             <span class="caption">Diagram</span>
4007          </div>
4008          <div id="h-1389097534_diagram" class="contents">
4009             <img usemap="#h1501379365" src="schemaDiagrams/h1501379365.png"/>
4010             <!--
4011             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1501379365.map--><map name="h1501379365">
4012 </map>
4013          </div>
4014          <script type="text/javascript">
4015 <!--
4016           setState('h-1389097534_diagram', true);
4017 // -->
4018 </script>
4019       </div>
4020       <div class="schemaComponent box">
4021          <div>
4022             <input type="button" id="h-1389097534_scbox_button" class="control"
4023                    onclick="switchState('h-1389097534_scbox'); return false;"
4024                    style="display: none"/>
4025             <span class="caption">Schema Component Representation</span>
4026          </div>
4027          <div id="h-1389097534_scbox" class="contents">
4028             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4029                <span class="scTag">name</span>="<span class="scContent">ProteinDomain</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
4030                      <span class="scTag">base</span>="<span class="scContent">
4031                         <span class="type">
4032                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4033                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4034                         <span class="scTag">name</span>="<span class="scContent">from</span>" <span class="scTag">type</span>="<span class="scContent">
4035                            <span class="type">
4036                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
4037                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
4038                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4039                         <span class="scTag">name</span>="<span class="scContent">to</span>" <span class="scTag">type</span>="<span class="scContent">
4040                            <span class="type">
4041                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:nonNegativeInteger</span>
4042                         </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
4043                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4044                         <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
4045                            <span class="type">
4046                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4047                         </span>"/&gt;</div>
4048                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4049                         <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
4050                            <span class="type">
4051                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4052                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4053          </div>
4054          <script type="text/javascript">
4055 <!--
4056           setState('h-1389097534_scbox', false);
4057 // -->
4058 </script>
4059       </div>
4060       <div style="text-align: right; clear: both;">
4061          <a href="#top">top</a>
4062       </div>
4063       <hr/>
4064       <h3>Complex Type: <a name="h401516646" class="name">Reference</a>
4065       </h3>
4066       <table class="hierarchy">
4067          <tr>
4068             <th>Super-types:</th>
4069             <td>None</td>
4070          </tr>
4071          <tr>
4072             <th>Sub-types:</th>
4073             <td>None</td>
4074          </tr>
4075       </table>
4076       <table class="properties">
4077          <tr>
4078             <th>Name</th>
4079             <td>Reference</td>
4080          </tr>
4081          <tr>
4082             <th>Used by (from the same schema document)</th>
4083             <td>Complex Type <b>
4084                   <a href="#h-1124608460">Clade</a>
4085                </b>
4086             </td>
4087          </tr>
4088          <tr>
4089             <th>
4090                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4091             </th>
4092             <td>no</td>
4093          </tr>
4094          <tr>
4095             <th>Documentation</th>
4096             <td class="documentation"> A literature reference for a clade. It is recommended to use the 'doi' attribute instead of
4097             the free text 'desc' element whenever possible. </td>
4098          </tr>
4099       </table>
4100       <div class="sample box">
4101          <div>
4102             <input type="button" id="h401516646_xibox_button" class="control"
4103                    onclick="switchState('h401516646_xibox'); return false;"
4104                    style="display: none"/>
4105             <span class="caption">XML Instance Representation</span>
4106          </div>
4107          <div id="h401516646_xibox" class="contents">
4108             <div style="margin-left: 0em">&lt;...<br/>
4109                <span style="margin-left: 0.5em"> doi="<span class="type">
4110                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4111                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4112                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="type">
4113                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:desc&gt; <span class="occurs">[0..1]</span>
4114                </div>&lt;/...&gt;</div>
4115          </div>
4116          <script type="text/javascript">
4117 <!--
4118           setState('h401516646_xibox', true);
4119 // -->
4120 </script>
4121       </div>
4122       <div class="sample box">
4123          <div>
4124             <input type="button" id="h401516646_diagram_button" class="control"
4125                    onclick="switchState('h401516646_diagram'); return false;"
4126                    style="display: none"/>
4127             <span class="caption">Diagram</span>
4128          </div>
4129          <div id="h401516646_diagram" class="contents">
4130             <img usemap="#h1727164161" src="schemaDiagrams/h1727164161.png"/>
4131             <!--
4132             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1727164161.map--><map name="h1727164161">
4133 </map>
4134          </div>
4135          <script type="text/javascript">
4136 <!--
4137           setState('h401516646_diagram', true);
4138 // -->
4139 </script>
4140       </div>
4141       <div class="schemaComponent box">
4142          <div>
4143             <input type="button" id="h401516646_scbox_button" class="control"
4144                    onclick="switchState('h401516646_scbox'); return false;"
4145                    style="display: none"/>
4146             <span class="caption">Schema Component Representation</span>
4147          </div>
4148          <div id="h401516646_scbox" class="contents">
4149             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4150                <span class="scTag">name</span>="<span class="scContent">Reference</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4151                      <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
4152                         <span class="type">
4153                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4154                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4155                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4156                   <span class="scTag">name</span>="<span class="scContent">doi</span>" <span class="scTag">type</span>="<span class="scContent">
4157                      <span class="type">
4158                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4159                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4160          </div>
4161          <script type="text/javascript">
4162 <!--
4163           setState('h401516646_scbox', false);
4164 // -->
4165 </script>
4166       </div>
4167       <div style="text-align: right; clear: both;">
4168          <a href="#top">top</a>
4169       </div>
4170       <hr/>
4171       <h3>Complex Type: <a name="h-1794244794" class="name">Sequence</a>
4172       </h3>
4173       <table class="hierarchy">
4174          <tr>
4175             <th>Super-types:</th>
4176             <td>None</td>
4177          </tr>
4178          <tr>
4179             <th>Sub-types:</th>
4180             <td>None</td>
4181          </tr>
4182       </table>
4183       <table class="properties">
4184          <tr>
4185             <th>Name</th>
4186             <td>Sequence</td>
4187          </tr>
4188          <tr>
4189             <th>Used by (from the same schema document)</th>
4190             <td>Complex Type <b>
4191                   <a href="#h-1124608460">Clade</a>
4192                </b>
4193             </td>
4194          </tr>
4195          <tr>
4196             <th>
4197                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4198             </th>
4199             <td>no</td>
4200          </tr>
4201          <tr>
4202             <th>Documentation</th>
4203             <td class="documentation"> Element Sequence is used to represent a molecular sequence (Protein, DNA, RNA) associated
4204             with a node. 'symbol' is a short (maximal ten characters) symbol of the sequence (e.g. 'ACTM') whereas
4205             'name' is used for the full name (e.g. 'muscle Actin'). 'location' is used for the location of a sequence on
4206             a genome/chromosome. The actual sequence can be stored with the 'mol_seq' element. Attribute 'type' is used
4207             to indicate the type of sequence ('dna', 'rna', or 'protein'). One intended use for 'id_ref' is to link a
4208             sequence to a taxonomy (via the taxonomy's 'id_source') in case of multiple sequences and taxonomies per
4209             node. </td>
4210          </tr>
4211       </table>
4212       <div class="sample box">
4213          <div>
4214             <input type="button" id="h-1794244794_xibox_button" class="control"
4215                    onclick="switchState('h-1794244794_xibox'); return false;"
4216                    style="display: none"/>
4217             <span class="caption">XML Instance Representation</span>
4218          </div>
4219          <div id="h-1794244794_xibox" class="contents">
4220             <div style="margin-left: 0em">&lt;...<br/>
4221                <span style="margin-left: 0.5em"> type="<span class="type">
4222                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceType&#34; type definition." href="#h1408823200">SequenceType</a>
4223                   </span>
4224                   <span class="occurs">[0..1]</span>"</span>
4225                <br/>
4226                <span style="margin-left: 0.5em"> id_source="<span class="type">
4227                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4228                   </span>
4229                   <span class="occurs">[0..1]</span>"</span>
4230                <br/>
4231                <span style="margin-left: 0.5em"> id_ref="<span class="type">
4232                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4233                   </span>
4234                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4235                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:symbol&gt; <span class="type">
4236                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceSymbol&#34; type definition." href="#h935679102">SequenceSymbol</a>
4237                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:symbol&gt; <span class="occurs">[0..1]</span>
4238                </div>
4239                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession&gt; <span class="type">
4240                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Accession&#34; type definition." href="#h-788356801">Accession</a>
4241                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:accession&gt; <span class="occurs">[0..1]</span>
4242                </div>
4243                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="type">
4244                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:name&gt; <span class="occurs">[0..1]</span>
4245                </div>
4246                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location&gt; <span class="type">
4247                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:location&gt; <span class="occurs">[0..1]</span>
4248                </div>
4249                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq&gt; <span class="type">
4250                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;MolSeq&#34; type definition." href="#h-213750342">MolSeq</a>
4251                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:mol_seq&gt; <span class="occurs">[0..1]</span>
4252                </div>
4253                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
4254                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4255                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
4256                </div>
4257                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation&gt; <span class="type">
4258                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Annotation&#34; type definition." href="#h917087604">Annotation</a>
4259                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:annotation&gt; <span class="occurs">[0..*]</span>
4260                </div>
4261                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture&gt; <span class="type">
4262                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;DomainArchitecture&#34; type definition." href="#h259010940">DomainArchitecture</a>
4263                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:domain_architecture&gt; <span class="occurs">[0..1]</span>
4264                </div>
4265                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
4266                </div>&lt;/...&gt;</div>
4267          </div>
4268          <script type="text/javascript">
4269 <!--
4270           setState('h-1794244794_xibox', true);
4271 // -->
4272 </script>
4273       </div>
4274       <div class="sample box">
4275          <div>
4276             <input type="button" id="h-1794244794_diagram_button" class="control"
4277                    onclick="switchState('h-1794244794_diagram'); return false;"
4278                    style="display: none"/>
4279             <span class="caption">Diagram</span>
4280          </div>
4281          <div id="h-1794244794_diagram" class="contents">
4282             <img usemap="#h1156064289" src="schemaDiagrams/h1156064289.png"/>
4283             <!--
4284             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h1156064289.map--><map name="h1156064289">
4285                <area shape="rect" alt="h935679102" coords="222,0,320,40"
4286                      href="phyloxml.xsd.html#h935679102"/>
4287
4288                <area shape="rect" alt="h-788356801" coords="222,50,341,90"
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4290
4291                <area shape="rect" alt="h-213750342" coords="222,200,327,240"
4292                      href="phyloxml.xsd.html#h-213750342"/>
4293
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4296
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4298                      href="phyloxml.xsd.html#h917087604"/>
4299
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4305
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4311
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4313          </div>
4314          <script type="text/javascript">
4315 <!--
4316           setState('h-1794244794_diagram', true);
4317 // -->
4318 </script>
4319       </div>
4320       <div class="schemaComponent box">
4321          <div>
4322             <input type="button" id="h-1794244794_scbox_button" class="control"
4323                    onclick="switchState('h-1794244794_scbox'); return false;"
4324                    style="display: none"/>
4325             <span class="caption">Schema Component Representation</span>
4326          </div>
4327          <div id="h-1794244794_scbox" class="contents">
4328             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4329                <span class="scTag">name</span>="<span class="scContent">Sequence</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4330                      <span class="scTag">name</span>="<span class="scContent">symbol</span>" <span class="scTag">type</span>="<span class="scContent">
4331                         <span class="type">
4332                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceSymbol&#34; type definition." href="#h935679102">SequenceSymbol</a>
4333                         </span>
4334                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4335                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4336                      <span class="scTag">name</span>="<span class="scContent">accession</span>" <span class="scTag">type</span>="<span class="scContent">
4337                         <span class="type">
4338                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Accession&#34; type definition." href="#h-788356801">Accession</a>
4339                         </span>
4340                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4341                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4342                      <span class="scTag">name</span>="<span class="scContent">name</span>" <span class="scTag">type</span>="<span class="scContent">
4343                         <span class="type">
4344                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4345                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4346                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4347                      <span class="scTag">name</span>="<span class="scContent">location</span>" <span class="scTag">type</span>="<span class="scContent">
4348                         <span class="type">
4349                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4350                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4351                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4352                      <span class="scTag">name</span>="<span class="scContent">mol_seq</span>" <span class="scTag">type</span>="<span class="scContent">
4353                         <span class="type">
4354                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;MolSeq&#34; type definition." href="#h-213750342">MolSeq</a>
4355                         </span>
4356                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4357                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4358                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
4359                         <span class="type">
4360                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4361                         </span>
4362                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4363                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4364                      <span class="scTag">name</span>="<span class="scContent">annotation</span>" <span class="scTag">type</span>="<span class="scContent">
4365                         <span class="type">
4366                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Annotation&#34; type definition." href="#h917087604">Annotation</a>
4367                         </span>
4368                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
4369                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4370                      <span class="scTag">name</span>="<span class="scContent">domain_architecture</span>" <span class="scTag">type</span>="<span class="scContent">
4371                         <span class="type">
4372                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;DomainArchitecture&#34; type definition." href="#h259010940">DomainArchitecture</a>
4373                         </span>
4374                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4375                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
4376                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4377                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4378                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4379                      <span class="type">
4380                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceType&#34; type definition." href="#h1408823200">SequenceType</a>
4381                      </span>
4382                   </span>"/&gt;</div>
4383                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4384                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
4385                      <span class="type">
4386                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4387                      </span>
4388                   </span>"/&gt;</div>
4389                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4390                   <span class="scTag">name</span>="<span class="scContent">id_ref</span>" <span class="scTag">type</span>="<span class="scContent">
4391                      <span class="type">
4392                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4393                      </span>
4394                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4395          </div>
4396          <script type="text/javascript">
4397 <!--
4398           setState('h-1794244794_scbox', false);
4399 // -->
4400 </script>
4401       </div>
4402       <div style="text-align: right; clear: both;">
4403          <a href="#top">top</a>
4404       </div>
4405       <hr/>
4406       <h3>Complex Type: <a name="h-802965662" class="name">SequenceRelation</a>
4407       </h3>
4408       <table class="hierarchy">
4409          <tr>
4410             <th>Super-types:</th>
4411             <td>None</td>
4412          </tr>
4413          <tr>
4414             <th>Sub-types:</th>
4415             <td>None</td>
4416          </tr>
4417       </table>
4418       <table class="properties">
4419          <tr>
4420             <th>Name</th>
4421             <td>SequenceRelation</td>
4422          </tr>
4423          <tr>
4424             <th>Used by (from the same schema document)</th>
4425             <td>Complex Type <b>
4426                   <a href="#h535307528">Phylogeny</a>
4427                </b>
4428             </td>
4429          </tr>
4430          <tr>
4431             <th>
4432                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4433             </th>
4434             <td>no</td>
4435          </tr>
4436          <tr>
4437             <th>Documentation</th>
4438             <td class="documentation"> This is used to express a typed relationship between two sequences. For example it could be
4439             used to describe an orthology (in which case attribute 'type' is 'orthology'). </td>
4440          </tr>
4441       </table>
4442       <div class="sample box">
4443          <div>
4444             <input type="button" id="h-802965662_xibox_button" class="control"
4445                    onclick="switchState('h-802965662_xibox'); return false;"
4446                    style="display: none"/>
4447             <span class="caption">XML Instance Representation</span>
4448          </div>
4449          <div id="h-802965662_xibox" class="contents">
4450             <div style="margin-left: 0em">&lt;...<br/>
4451                <span style="margin-left: 0.5em"> id_ref_0="<span class="type">
4452                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4453                   </span>
4454                   <span class="occurs">[1]</span>"</span>
4455                <br/>
4456                <span style="margin-left: 0.5em"> id_ref_1="<span class="type">
4457                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4458                   </span>
4459                   <span class="occurs">[1]</span>"</span>
4460                <br/>
4461                <span style="margin-left: 0.5em"> distance="<span class="type">
4462                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4463                   <span class="occurs">[0..1]</span>"</span>
4464                <br/>
4465                <span style="margin-left: 0.5em"> type="<span class="type">
4466                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelationType&#34; type definition." href="#h519911868">SequenceRelationType</a>
4467                   </span>
4468                   <span class="occurs">[1]</span>"</span>&gt; <br/>
4469                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="type">
4470                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
4471                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:confidence&gt; <span class="occurs">[0..1]</span>
4472                </div>&lt;/...&gt;</div>
4473          </div>
4474          <script type="text/javascript">
4475 <!--
4476           setState('h-802965662_xibox', true);
4477 // -->
4478 </script>
4479       </div>
4480       <div class="sample box">
4481          <div>
4482             <input type="button" id="h-802965662_diagram_button" class="control"
4483                    onclick="switchState('h-802965662_diagram'); return false;"
4484                    style="display: none"/>
4485             <span class="caption">Diagram</span>
4486          </div>
4487          <div id="h-802965662_diagram" class="contents">
4488             <img usemap="#h230020485" src="schemaDiagrams/h230020485.png"/>
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4509 </script>
4510       </div>
4511       <div class="schemaComponent box">
4512          <div>
4513             <input type="button" id="h-802965662_scbox_button" class="control"
4514                    onclick="switchState('h-802965662_scbox'); return false;"
4515                    style="display: none"/>
4516             <span class="caption">Schema Component Representation</span>
4517          </div>
4518          <div id="h-802965662_scbox" class="contents">
4519             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4520                <span class="scTag">name</span>="<span class="scContent">SequenceRelation</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4521                      <span class="scTag">name</span>="<span class="scContent">confidence</span>" <span class="scTag">type</span>="<span class="scContent">
4522                         <span class="type">
4523                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Confidence&#34; type definition." href="#h-993584945">Confidence</a>
4524                         </span>
4525                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4526                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4527                   <span class="scTag">name</span>="<span class="scContent">id_ref_0</span>" <span class="scTag">type</span>="<span class="scContent">
4528                      <span class="type">
4529                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4530                      </span>
4531                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
4532                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4533                   <span class="scTag">name</span>="<span class="scContent">id_ref_1</span>" <span class="scTag">type</span>="<span class="scContent">
4534                      <span class="type">
4535                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_ref&#34; type definition." href="#h577349652">id_ref</a>
4536                      </span>
4537                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>
4538                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4539                   <span class="scTag">name</span>="<span class="scContent">distance</span>" <span class="scTag">type</span>="<span class="scContent">
4540                      <span class="type">
4541                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:double</span>
4542                   </span>"/&gt;</div>
4543                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4544                   <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4545                      <span class="type">
4546                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;SequenceRelationType&#34; type definition." href="#h519911868">SequenceRelationType</a>
4547                      </span>
4548                   </span>" <span class="scTag">use</span>="<span class="scContent">required</span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4549          </div>
4550          <script type="text/javascript">
4551 <!--
4552           setState('h-802965662_scbox', false);
4553 // -->
4554 </script>
4555       </div>
4556       <div style="text-align: right; clear: both;">
4557          <a href="#top">top</a>
4558       </div>
4559       <hr/>
4560       <h3>Complex Type: <a name="h888650454" class="name">Taxonomy</a>
4561       </h3>
4562       <table class="hierarchy">
4563          <tr>
4564             <th>Super-types:</th>
4565             <td>None</td>
4566          </tr>
4567          <tr>
4568             <th>Sub-types:</th>
4569             <td>None</td>
4570          </tr>
4571       </table>
4572       <table class="properties">
4573          <tr>
4574             <th>Name</th>
4575             <td>Taxonomy</td>
4576          </tr>
4577          <tr>
4578             <th>Used by (from the same schema document)</th>
4579             <td>Complex Type <b>
4580                   <a href="#h-1124608460">Clade</a>
4581                </b>
4582             </td>
4583          </tr>
4584          <tr>
4585             <th>
4586                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4587             </th>
4588             <td>no</td>
4589          </tr>
4590          <tr>
4591             <th>Documentation</th>
4592             <td class="documentation"> Element Taxonomy is used to describe taxonomic information for a clade. Element 'code' is
4593             intended to store UniProt/Swiss-Prot style organism codes (e.g. 'APLCA' for the California sea hare 'Aplysia
4594             californica') or other styles of mnemonics (e.g. 'Aca'). Element 'authority' is used to keep the authority,
4595             such as 'J. G. Cooper, 1863', associated with the 'scientific_name'. Element 'id' is used for a unique
4596             identifier of a taxon (for example '6500' with 'ncbi_taxonomy' as 'provider' for the California sea hare).
4597             Attribute 'id_source' is used to link other elements to a taxonomy (on the xml-level).</td>
4598          </tr>
4599       </table>
4600       <div class="sample box">
4601          <div>
4602             <input type="button" id="h888650454_xibox_button" class="control"
4603                    onclick="switchState('h888650454_xibox'); return false;"
4604                    style="display: none"/>
4605             <span class="caption">XML Instance Representation</span>
4606          </div>
4607          <div id="h888650454_xibox" class="contents">
4608             <div style="margin-left: 0em">&lt;...<br/>
4609                <span style="margin-left: 0.5em"> id_source="<span class="type">
4610                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4611                   </span>
4612                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4613                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="type">
4614                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
4615                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:id&gt; <span class="occurs">[0..1]</span>
4616                </div>
4617                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code&gt; <span class="type">
4618                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;TaxonomyCode&#34; type definition." href="#h712147427">TaxonomyCode</a>
4619                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:code&gt; <span class="occurs">[0..1]</span>
4620                </div>
4621                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name&gt; <span class="type">
4622                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:scientific_name&gt; <span class="occurs">[0..1]</span>
4623                </div>
4624                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:authority&gt; <span class="type">
4625                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:authority&gt; <span class="occurs">[0..1]</span>
4626                </div>
4627                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name&gt; <span class="type">
4628                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:common_name&gt; <span class="occurs">[0..*]</span>
4629                </div>
4630                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:synonym&gt; <span class="type">
4631                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:synonym&gt; <span class="occurs">[0..*]</span>
4632                </div>
4633                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank&gt; <span class="type">
4634                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Rank&#34; type definition." href="#h518348337">Rank</a>
4635                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:rank&gt; <span class="occurs">[0..1]</span>
4636                </div>
4637                <div style="margin-left: 1.5em">&lt;<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="type">
4638                      <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4639                   </span> &lt;/<a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:uri&gt; <span class="occurs">[0..1]</span>
4640                </div>
4641                <div class="other" style="margin-left: 1.5em">Allow any elements from a namespace other than this schema's namespace (lax validation). <span class="occurs">[0..*]</span>
4642                </div>&lt;/...&gt;</div>
4643          </div>
4644          <script type="text/javascript">
4645 <!--
4646           setState('h888650454_xibox', true);
4647 // -->
4648 </script>
4649       </div>
4650       <div class="sample box">
4651          <div>
4652             <input type="button" id="h888650454_diagram_button" class="control"
4653                    onclick="switchState('h888650454_diagram'); return false;"
4654                    style="display: none"/>
4655             <span class="caption">Diagram</span>
4656          </div>
4657          <div id="h888650454_diagram" class="contents">
4658             <img usemap="#h992625297" src="schemaDiagrams/h992625297.png"/>
4659             <!--
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4677          </div>
4678          <script type="text/javascript">
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4681 // -->
4682 </script>
4683       </div>
4684       <div class="schemaComponent box">
4685          <div>
4686             <input type="button" id="h888650454_scbox_button" class="control"
4687                    onclick="switchState('h888650454_scbox'); return false;"
4688                    style="display: none"/>
4689             <span class="caption">Schema Component Representation</span>
4690          </div>
4691          <div id="h888650454_scbox" class="contents">
4692             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4693                <span class="scTag">name</span>="<span class="scContent">Taxonomy</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:sequence</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4694                      <span class="scTag">name</span>="<span class="scContent">id</span>" <span class="scTag">type</span>="<span class="scContent">
4695                         <span class="type">
4696                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Id&#34; type definition." href="#h-853091232">Id</a>
4697                         </span>
4698                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4699                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4700                      <span class="scTag">name</span>="<span class="scContent">code</span>" <span class="scTag">type</span>="<span class="scContent">
4701                         <span class="type">
4702                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;TaxonomyCode&#34; type definition." href="#h712147427">TaxonomyCode</a>
4703                         </span>
4704                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4705                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4706                      <span class="scTag">name</span>="<span class="scContent">scientific_name</span>" <span class="scTag">type</span>="<span class="scContent">
4707                         <span class="type">
4708                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4709                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4710                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4711                      <span class="scTag">name</span>="<span class="scContent">authority</span>" <span class="scTag">type</span>="<span class="scContent">
4712                         <span class="type">
4713                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4714                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4715                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4716                      <span class="scTag">name</span>="<span class="scContent">common_name</span>" <span class="scTag">type</span>="<span class="scContent">
4717                         <span class="type">
4718                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4719                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
4720                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4721                      <span class="scTag">name</span>="<span class="scContent">synonym</span>" <span class="scTag">type</span>="<span class="scContent">
4722                         <span class="type">
4723                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4724                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>"/&gt;</div>
4725                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4726                      <span class="scTag">name</span>="<span class="scContent">rank</span>" <span class="scTag">type</span>="<span class="scContent">
4727                         <span class="type">
4728                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Rank&#34; type definition." href="#h518348337">Rank</a>
4729                         </span>
4730                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4731                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:element</span>
4732                      <span class="scTag">name</span>="<span class="scContent">uri</span>" <span class="scTag">type</span>="<span class="scContent">
4733                         <span class="type">
4734                            <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;Uri&#34; type definition." href="#h-676012345">Uri</a>
4735                         </span>
4736                      </span>" <span class="scTag">minOccurs</span>="<span class="scContent">0</span>"/&gt;</div>
4737                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:any</span>
4738                      <span class="scTag">minOccurs</span>="<span class="scContent">0</span>" <span class="scTag">maxOccurs</span>="<span class="scContent">unbounded</span>" <span class="scTag">processContents</span>="<span class="scContent">lax</span>" <span class="scTag">namespace</span>="<span class="scContent">##other</span>"/&gt;</div>&lt;/<span class="scTag">xs:sequence</span>&gt;</div>
4739                <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4740                   <span class="scTag">name</span>="<span class="scContent">id_source</span>" <span class="scTag">type</span>="<span class="scContent">
4741                      <span class="type">
4742                         <a href="#ns_phy" title="Find out namespace of 'phy' prefix">phy</a>:<a title="Jump to &#34;id_source&#34; type definition." href="#h-1482113798">id_source</a>
4743                      </span>
4744                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4745          </div>
4746          <script type="text/javascript">
4747 <!--
4748           setState('h888650454_scbox', false);
4749 // -->
4750 </script>
4751       </div>
4752       <div style="text-align: right; clear: both;">
4753          <a href="#top">top</a>
4754       </div>
4755       <hr/>
4756       <h3>Complex Type: <a name="h-676012345" class="name">Uri</a>
4757       </h3>
4758       <table class="hierarchy">
4759          <tr>
4760             <th>Super-types:</th>
4761             <td>
4762                <span class="type">
4763                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span> &lt; <strong>Uri</strong> (by extension)</td>
4764          </tr>
4765          <tr>
4766             <th>Sub-types:</th>
4767             <td>None</td>
4768          </tr>
4769       </table>
4770       <table class="properties">
4771          <tr>
4772             <th>Name</th>
4773             <td>Uri</td>
4774          </tr>
4775          <tr>
4776             <th>Used by (from the same schema document)</th>
4777             <td>Complex Type <b>
4778                   <a href="#h888650454">Taxonomy</a>
4779                </b>, Complex Type <b>
4780                   <a href="#h-1794244794">Sequence</a>
4781                </b>, Complex Type <b>
4782                   <a href="#h917087604">Annotation</a>
4783                </b>
4784             </td>
4785          </tr>
4786          <tr>
4787             <th>
4788                <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
4789             </th>
4790             <td>no</td>
4791          </tr>
4792          <tr>
4793             <th>Documentation</th>
4794             <td class="documentation"> A uniform resource identifier. In general, this is expected to be an URL (for example, to
4795             link to an image on a website, in which case the 'type' attribute might be 'image' and 'desc' might be
4796             'image of a California sea hare'). </td>
4797          </tr>
4798       </table>
4799       <div class="sample box">
4800          <div>
4801             <input type="button" id="h-676012345_xibox_button" class="control"
4802                    onclick="switchState('h-676012345_xibox'); return false;"
4803                    style="display: none"/>
4804             <span class="caption">XML Instance Representation</span>
4805          </div>
4806          <div id="h-676012345_xibox" class="contents">
4807             <div style="margin-left: 0em">&lt;...<br/>
4808                <span style="margin-left: 0.5em" class="newFields"> desc="<span class="type">
4809                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4810                   <span class="occurs">[0..1]</span>"</span>
4811                <br/>
4812                <span style="margin-left: 0.5em" class="newFields"> type="<span class="type">
4813                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4814                   <span class="occurs">[0..1]</span>"</span>&gt; <br/>
4815                <span style="margin-left: 1.5em">
4816                   <span class="type">
4817                      <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
4818                </span>
4819                <br/>&lt;/...&gt;</div>
4820          </div>
4821          <script type="text/javascript">
4822 <!--
4823           setState('h-676012345_xibox', true);
4824 // -->
4825 </script>
4826       </div>
4827       <div class="sample box">
4828          <div>
4829             <input type="button" id="h-676012345_diagram_button" class="control"
4830                    onclick="switchState('h-676012345_diagram'); return false;"
4831                    style="display: none"/>
4832             <span class="caption">Diagram</span>
4833          </div>
4834          <div id="h-676012345_diagram" class="contents">
4835             <img usemap="#h-1930055872" src="schemaDiagrams/h-1930055872.png"/>
4836             <!--
4837             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1930055872.map--><map name="h-1930055872">
4838 </map>
4839          </div>
4840          <script type="text/javascript">
4841 <!--
4842           setState('h-676012345_diagram', true);
4843 // -->
4844 </script>
4845       </div>
4846       <div class="schemaComponent box">
4847          <div>
4848             <input type="button" id="h-676012345_scbox_button" class="control"
4849                    onclick="switchState('h-676012345_scbox'); return false;"
4850                    style="display: none"/>
4851             <span class="caption">Schema Component Representation</span>
4852          </div>
4853          <div id="h-676012345_scbox" class="contents">
4854             <div style="margin-left: 0em">&lt;<span class="scTag">xs:complexType</span>
4855                <span class="scTag">name</span>="<span class="scContent">Uri</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:simpleContent</span>&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:extension</span>
4856                      <span class="scTag">base</span>="<span class="scContent">
4857                         <span class="type">
4858                            <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:anyURI</span>
4859                      </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4860                         <span class="scTag">name</span>="<span class="scContent">desc</span>" <span class="scTag">type</span>="<span class="scContent">
4861                            <span class="type">
4862                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4863                         </span>"/&gt;</div>
4864                      <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:attribute</span>
4865                         <span class="scTag">name</span>="<span class="scContent">type</span>" <span class="scTag">type</span>="<span class="scContent">
4866                            <span class="type">
4867                               <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4868                         </span>"/&gt;</div>&lt;/<span class="scTag">xs:extension</span>&gt;</div>&lt;/<span class="scTag">xs:simpleContent</span>&gt;</div>&lt;/<span class="scTag">xs:complexType</span>&gt;</div>
4869          </div>
4870          <script type="text/javascript">
4871 <!--
4872           setState('h-676012345_scbox', false);
4873 // -->
4874 </script>
4875       </div>
4876       <div style="text-align: right; clear: both;">
4877          <a href="#top">top</a>
4878       </div>
4879       <hr/>
4880       <h3>Simple Type: <a name="h-763252414" class="name">AppliesTo</a>
4881       </h3>
4882       <table class="hierarchy">
4883          <tr>
4884             <th>Super-types:</th>
4885             <td>
4886                <span class="type">
4887                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>AppliesTo</strong> (by restriction)</td>
4888          </tr>
4889          <tr>
4890             <th>Sub-types:</th>
4891             <td>None</td>
4892          </tr>
4893       </table>
4894       <table class="properties">
4895          <tr>
4896             <th>Name</th>
4897             <td>AppliesTo</td>
4898          </tr>
4899          <tr>
4900             <th>Used by (from the same schema document)</th>
4901             <td>Complex Type <b>
4902                   <a href="#h158033242">Property</a>
4903                </b>
4904             </td>
4905          </tr>
4906          <tr>
4907             <th>Content</th>
4908             <td>
4909                <ul>
4910                   <li>Base XSD Type: token</li>
4911                </ul>
4912                <ul>
4913                   <li>
4914                      <em>value</em> comes from list: {'phylogeny'|'clade'|'node'|'annotation'|'parent_branch'|'other'}</li>
4915                </ul>
4916             </td>
4917          </tr>
4918       </table>
4919       <div class="sample box">
4920          <div>
4921             <input type="button" id="h-763252414_diagram_button" class="control"
4922                    onclick="switchState('h-763252414_diagram'); return false;"
4923                    style="display: none"/>
4924             <span class="caption">Diagram</span>
4925          </div>
4926          <div id="h-763252414_diagram" class="contents">
4927             <img usemap="#h-553597019" src="schemaDiagrams/h-553597019.png"/>
4928             <!--
4929             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-553597019.map--><map name="h-553597019">
4930 </map>
4931          </div>
4932          <script type="text/javascript">
4933 <!--
4934           setState('h-763252414_diagram', true);
4935 // -->
4936 </script>
4937       </div>
4938       <div class="schemaComponent box">
4939          <div>
4940             <input type="button" id="h-763252414_scbox_button" class="control"
4941                    onclick="switchState('h-763252414_scbox'); return false;"
4942                    style="display: none"/>
4943             <span class="caption">Schema Component Representation</span>
4944          </div>
4945          <div id="h-763252414_scbox" class="contents">
4946             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
4947                <span class="scTag">name</span>="<span class="scContent">AppliesTo</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
4948                   <span class="scTag">base</span>="<span class="scContent">
4949                      <span class="type">
4950                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
4951                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4952                      <span class="scTag">value</span>="<span class="scContent">phylogeny</span>"/&gt;</div>
4953                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4954                      <span class="scTag">value</span>="<span class="scContent">clade</span>"/&gt;</div>
4955                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4956                      <span class="scTag">value</span>="<span class="scContent">node</span>"/&gt;</div>
4957                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4958                      <span class="scTag">value</span>="<span class="scContent">annotation</span>"/&gt;</div>
4959                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4960                      <span class="scTag">value</span>="<span class="scContent">parent_branch</span>"/&gt;</div>
4961                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
4962                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
4963          </div>
4964          <script type="text/javascript">
4965 <!--
4966           setState('h-763252414_scbox', false);
4967 // -->
4968 </script>
4969       </div>
4970       <div style="text-align: right; clear: both;">
4971          <a href="#top">top</a>
4972       </div>
4973       <hr/>
4974       <h3>Simple Type: <a name="h1358103055" class="name">EventType</a>
4975       </h3>
4976       <table class="hierarchy">
4977          <tr>
4978             <th>Super-types:</th>
4979             <td>
4980                <span class="type">
4981                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>EventType</strong> (by restriction)</td>
4982          </tr>
4983          <tr>
4984             <th>Sub-types:</th>
4985             <td>None</td>
4986          </tr>
4987       </table>
4988       <table class="properties">
4989          <tr>
4990             <th>Name</th>
4991             <td>EventType</td>
4992          </tr>
4993          <tr>
4994             <th>Used by (from the same schema document)</th>
4995             <td>Complex Type <b>
4996                   <a href="#h-436501026">Events</a>
4997                </b>
4998             </td>
4999          </tr>
5000          <tr>
5001             <th>Content</th>
5002             <td>
5003                <ul>
5004                   <li>Base XSD Type: token</li>
5005                </ul>
5006                <ul>
5007                   <li>
5008                      <em>value</em> comes from list: {'transfer'|'fusion'|'speciation_or_duplication'|'other'|'mixed'|'unassigned'}</li>
5009                </ul>
5010             </td>
5011          </tr>
5012       </table>
5013       <div class="sample box">
5014          <div>
5015             <input type="button" id="h1358103055_diagram_button" class="control"
5016                    onclick="switchState('h1358103055_diagram'); return false;"
5017                    style="display: none"/>
5018             <span class="caption">Diagram</span>
5019          </div>
5020          <div id="h1358103055_diagram" class="contents">
5021             <img usemap="#h77064440" src="schemaDiagrams/h77064440.png"/>
5022             <!--
5023             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h77064440.map--><map name="h77064440">
5024 </map>
5025          </div>
5026          <script type="text/javascript">
5027 <!--
5028           setState('h1358103055_diagram', true);
5029 // -->
5030 </script>
5031       </div>
5032       <div class="schemaComponent box">
5033          <div>
5034             <input type="button" id="h1358103055_scbox_button" class="control"
5035                    onclick="switchState('h1358103055_scbox'); return false;"
5036                    style="display: none"/>
5037             <span class="caption">Schema Component Representation</span>
5038          </div>
5039          <div id="h1358103055_scbox" class="contents">
5040             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5041                <span class="scTag">name</span>="<span class="scContent">EventType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5042                   <span class="scTag">base</span>="<span class="scContent">
5043                      <span class="type">
5044                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5045                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5046                      <span class="scTag">value</span>="<span class="scContent">transfer</span>"/&gt;</div>
5047                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5048                      <span class="scTag">value</span>="<span class="scContent">fusion</span>"/&gt;</div>
5049                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5050                      <span class="scTag">value</span>="<span class="scContent">speciation_or_duplication</span>"/&gt;</div>
5051                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5052                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>
5053                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5054                      <span class="scTag">value</span>="<span class="scContent">mixed</span>"/&gt;</div>
5055                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5056                      <span class="scTag">value</span>="<span class="scContent">unassigned</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5057          </div>
5058          <script type="text/javascript">
5059 <!--
5060           setState('h1358103055_scbox', false);
5061 // -->
5062 </script>
5063       </div>
5064       <div style="text-align: right; clear: both;">
5065          <a href="#top">top</a>
5066       </div>
5067       <hr/>
5068       <h3>Simple Type: <a name="h-54338178" class="name">PropertyDataType</a>
5069       </h3>
5070       <table class="hierarchy">
5071          <tr>
5072             <th>Super-types:</th>
5073             <td>
5074                <span class="type">
5075                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>PropertyDataType</strong> (by restriction)</td>
5076          </tr>
5077          <tr>
5078             <th>Sub-types:</th>
5079             <td>None</td>
5080          </tr>
5081       </table>
5082       <table class="properties">
5083          <tr>
5084             <th>Name</th>
5085             <td>PropertyDataType</td>
5086          </tr>
5087          <tr>
5088             <th>Used by (from the same schema document)</th>
5089             <td>Complex Type <b>
5090                   <a href="#h158033242">Property</a>
5091                </b>
5092             </td>
5093          </tr>
5094          <tr>
5095             <th>Content</th>
5096             <td>
5097                <ul>
5098                   <li>Base XSD Type: token</li>
5099                </ul>
5100                <ul>
5101                   <li>
5102                      <em>value</em> comes from list: {'xsd:string'|'xsd:boolean'|'xsd:decimal'|'xsd:float'|'xsd:double'|'xsd:duration'|'xsd:dateTime'|'xsd:time'|'xsd:date'|'xsd:gYearMonth'|'xsd:gYear'|'xsd:gMonthDay'|'xsd:gDay'|'xsd:gMonth'|'xsd:hexBinary'|'xsd:base64Binary'|'xsd:anyURI'|'xsd:normalizedString'|'xsd:token'|'xsd:integer'|'xsd:nonPositiveInteger'|'xsd:negativeInteger'|'xsd:long'|'xsd:int'|'xsd:short'|'xsd:byte'|'xsd:nonNegativeInteger'|'xsd:unsignedLong'|'xsd:unsignedInt'|'xsd:unsignedShort'|'xsd:unsignedByte'|'xsd:positiveInteger'}</li>
5103                </ul>
5104             </td>
5105          </tr>
5106       </table>
5107       <div class="sample box">
5108          <div>
5109             <input type="button" id="h-54338178_diagram_button" class="control"
5110                    onclick="switchState('h-54338178_diagram'); return false;"
5111                    style="display: none"/>
5112             <span class="caption">Diagram</span>
5113          </div>
5114          <div id="h-54338178_diagram" class="contents">
5115             <img usemap="#h-624240407" src="schemaDiagrams/h-624240407.png"/>
5116             <!--
5117             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-624240407.map--><map name="h-624240407">
5118 </map>
5119          </div>
5120          <script type="text/javascript">
5121 <!--
5122           setState('h-54338178_diagram', true);
5123 // -->
5124 </script>
5125       </div>
5126       <div class="schemaComponent box">
5127          <div>
5128             <input type="button" id="h-54338178_scbox_button" class="control"
5129                    onclick="switchState('h-54338178_scbox'); return false;"
5130                    style="display: none"/>
5131             <span class="caption">Schema Component Representation</span>
5132          </div>
5133          <div id="h-54338178_scbox" class="contents">
5134             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5135                <span class="scTag">name</span>="<span class="scContent">PropertyDataType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5136                   <span class="scTag">base</span>="<span class="scContent">
5137                      <span class="type">
5138                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5139                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5140                      <span class="scTag">value</span>="<span class="scContent">xsd:string</span>"/&gt;</div>
5141                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5142                      <span class="scTag">value</span>="<span class="scContent">xsd:boolean</span>"/&gt;</div>
5143                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5144                      <span class="scTag">value</span>="<span class="scContent">xsd:decimal</span>"/&gt;</div>
5145                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5146                      <span class="scTag">value</span>="<span class="scContent">xsd:float</span>"/&gt;</div>
5147                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5148                      <span class="scTag">value</span>="<span class="scContent">xsd:double</span>"/&gt;</div>
5149                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5150                      <span class="scTag">value</span>="<span class="scContent">xsd:duration</span>"/&gt;</div>
5151                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5152                      <span class="scTag">value</span>="<span class="scContent">xsd:dateTime</span>"/&gt;</div>
5153                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5154                      <span class="scTag">value</span>="<span class="scContent">xsd:time</span>"/&gt;</div>
5155                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5156                      <span class="scTag">value</span>="<span class="scContent">xsd:date</span>"/&gt;</div>
5157                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5158                      <span class="scTag">value</span>="<span class="scContent">xsd:gYearMonth</span>"/&gt;</div>
5159                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5160                      <span class="scTag">value</span>="<span class="scContent">xsd:gYear</span>"/&gt;</div>
5161                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5162                      <span class="scTag">value</span>="<span class="scContent">xsd:gMonthDay</span>"/&gt;</div>
5163                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5164                      <span class="scTag">value</span>="<span class="scContent">xsd:gDay</span>"/&gt;</div>
5165                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5166                      <span class="scTag">value</span>="<span class="scContent">xsd:gMonth</span>"/&gt;</div>
5167                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5168                      <span class="scTag">value</span>="<span class="scContent">xsd:hexBinary</span>"/&gt;</div>
5169                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5170                      <span class="scTag">value</span>="<span class="scContent">xsd:base64Binary</span>"/&gt;</div>
5171                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5172                      <span class="scTag">value</span>="<span class="scContent">xsd:anyURI</span>"/&gt;</div>
5173                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5174                      <span class="scTag">value</span>="<span class="scContent">xsd:normalizedString</span>"/&gt;</div>
5175                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5176                      <span class="scTag">value</span>="<span class="scContent">xsd:token</span>"/&gt;</div>
5177                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5178                      <span class="scTag">value</span>="<span class="scContent">xsd:integer</span>"/&gt;</div>
5179                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5180                      <span class="scTag">value</span>="<span class="scContent">xsd:nonPositiveInteger</span>"/&gt;</div>
5181                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5182                      <span class="scTag">value</span>="<span class="scContent">xsd:negativeInteger</span>"/&gt;</div>
5183                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5184                      <span class="scTag">value</span>="<span class="scContent">xsd:long</span>"/&gt;</div>
5185                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5186                      <span class="scTag">value</span>="<span class="scContent">xsd:int</span>"/&gt;</div>
5187                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5188                      <span class="scTag">value</span>="<span class="scContent">xsd:short</span>"/&gt;</div>
5189                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5190                      <span class="scTag">value</span>="<span class="scContent">xsd:byte</span>"/&gt;</div>
5191                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5192                      <span class="scTag">value</span>="<span class="scContent">xsd:nonNegativeInteger</span>"/&gt;</div>
5193                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5194                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedLong</span>"/&gt;</div>
5195                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5196                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedInt</span>"/&gt;</div>
5197                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5198                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedShort</span>"/&gt;</div>
5199                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5200                      <span class="scTag">value</span>="<span class="scContent">xsd:unsignedByte</span>"/&gt;</div>
5201                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5202                      <span class="scTag">value</span>="<span class="scContent">xsd:positiveInteger</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5203          </div>
5204          <script type="text/javascript">
5205 <!--
5206           setState('h-54338178_scbox', false);
5207 // -->
5208 </script>
5209       </div>
5210       <div style="text-align: right; clear: both;">
5211          <a href="#top">top</a>
5212       </div>
5213       <hr/>
5214       <h3>Simple Type: <a name="h518348337" class="name">Rank</a>
5215       </h3>
5216       <table class="hierarchy">
5217          <tr>
5218             <th>Super-types:</th>
5219             <td>
5220                <span class="type">
5221                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>Rank</strong> (by restriction)</td>
5222          </tr>
5223          <tr>
5224             <th>Sub-types:</th>
5225             <td>None</td>
5226          </tr>
5227       </table>
5228       <table class="properties">
5229          <tr>
5230             <th>Name</th>
5231             <td>Rank</td>
5232          </tr>
5233          <tr>
5234             <th>Used by (from the same schema document)</th>
5235             <td>Complex Type <b>
5236                   <a href="#h888650454">Taxonomy</a>
5237                </b>
5238             </td>
5239          </tr>
5240          <tr>
5241             <th>Content</th>
5242             <td>
5243                <ul>
5244                   <li>Base XSD Type: token</li>
5245                </ul>
5246                <ul>
5247                   <li>
5248                      <em>value</em> comes from list: {'domain'|'superkingdom'|'kingdom'|'subkingdom'|'branch'|'infrakingdom'|'superphylum'|'phylum'|'subphylum'|'infraphylum'|'microphylum'|'superdivision'|'division'|'subdivision'|'infradivision'|'superclass'|'class'|'subclass'|'infraclass'|'superlegion'|'legion'|'sublegion'|'infralegion'|'supercohort'|'cohort'|'subcohort'|'infracohort'|'superorder'|'order'|'suborder'|'superfamily'|'family'|'subfamily'|'supertribe'|'tribe'|'subtribe'|'infratribe'|'genus'|'subgenus'|'superspecies'|'species'|'subspecies'|'variety'|'subvariety'|'form'|'subform'|'cultivar'|'strain'|'unknown'|'other'}</li>
5249                </ul>
5250             </td>
5251          </tr>
5252       </table>
5253       <div class="sample box">
5254          <div>
5255             <input type="button" id="h518348337_diagram_button" class="control"
5256                    onclick="switchState('h518348337_diagram'); return false;"
5257                    style="display: none"/>
5258             <span class="caption">Diagram</span>
5259          </div>
5260          <div id="h518348337_diagram" class="contents">
5261             <img usemap="#h-1363552746" src="schemaDiagrams/h-1363552746.png"/>
5262             <!--
5263             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1363552746.map--><map name="h-1363552746">
5264 </map>
5265          </div>
5266          <script type="text/javascript">
5267 <!--
5268           setState('h518348337_diagram', true);
5269 // -->
5270 </script>
5271       </div>
5272       <div class="schemaComponent box">
5273          <div>
5274             <input type="button" id="h518348337_scbox_button" class="control"
5275                    onclick="switchState('h518348337_scbox'); return false;"
5276                    style="display: none"/>
5277             <span class="caption">Schema Component Representation</span>
5278          </div>
5279          <div id="h518348337_scbox" class="contents">
5280             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5281                <span class="scTag">name</span>="<span class="scContent">Rank</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5282                   <span class="scTag">base</span>="<span class="scContent">
5283                      <span class="type">
5284                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5285                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5286                      <span class="scTag">value</span>="<span class="scContent">domain</span>"/&gt;</div>
5287                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5288                      <span class="scTag">value</span>="<span class="scContent">superkingdom</span>"/&gt;</div>
5289                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5290                      <span class="scTag">value</span>="<span class="scContent">kingdom</span>"/&gt;</div>
5291                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5292                      <span class="scTag">value</span>="<span class="scContent">subkingdom</span>"/&gt;</div>
5293                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5294                      <span class="scTag">value</span>="<span class="scContent">branch</span>"/&gt;</div>
5295                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5296                      <span class="scTag">value</span>="<span class="scContent">infrakingdom</span>"/&gt;</div>
5297                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5298                      <span class="scTag">value</span>="<span class="scContent">superphylum</span>"/&gt;</div>
5299                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5300                      <span class="scTag">value</span>="<span class="scContent">phylum</span>"/&gt;</div>
5301                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5302                      <span class="scTag">value</span>="<span class="scContent">subphylum</span>"/&gt;</div>
5303                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5304                      <span class="scTag">value</span>="<span class="scContent">infraphylum</span>"/&gt;</div>
5305                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5306                      <span class="scTag">value</span>="<span class="scContent">microphylum</span>"/&gt;</div>
5307                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5308                      <span class="scTag">value</span>="<span class="scContent">superdivision</span>"/&gt;</div>
5309                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5310                      <span class="scTag">value</span>="<span class="scContent">division</span>"/&gt;</div>
5311                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5312                      <span class="scTag">value</span>="<span class="scContent">subdivision</span>"/&gt;</div>
5313                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5314                      <span class="scTag">value</span>="<span class="scContent">infradivision</span>"/&gt;</div>
5315                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5316                      <span class="scTag">value</span>="<span class="scContent">superclass</span>"/&gt;</div>
5317                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5318                      <span class="scTag">value</span>="<span class="scContent">class</span>"/&gt;</div>
5319                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5320                      <span class="scTag">value</span>="<span class="scContent">subclass</span>"/&gt;</div>
5321                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5322                      <span class="scTag">value</span>="<span class="scContent">infraclass</span>"/&gt;</div>
5323                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5324                      <span class="scTag">value</span>="<span class="scContent">superlegion</span>"/&gt;</div>
5325                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5326                      <span class="scTag">value</span>="<span class="scContent">legion</span>"/&gt;</div>
5327                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5328                      <span class="scTag">value</span>="<span class="scContent">sublegion</span>"/&gt;</div>
5329                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5330                      <span class="scTag">value</span>="<span class="scContent">infralegion</span>"/&gt;</div>
5331                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5332                      <span class="scTag">value</span>="<span class="scContent">supercohort</span>"/&gt;</div>
5333                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5334                      <span class="scTag">value</span>="<span class="scContent">cohort</span>"/&gt;</div>
5335                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5336                      <span class="scTag">value</span>="<span class="scContent">subcohort</span>"/&gt;</div>
5337                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5338                      <span class="scTag">value</span>="<span class="scContent">infracohort</span>"/&gt;</div>
5339                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5340                      <span class="scTag">value</span>="<span class="scContent">superorder</span>"/&gt;</div>
5341                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5342                      <span class="scTag">value</span>="<span class="scContent">order</span>"/&gt;</div>
5343                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5344                      <span class="scTag">value</span>="<span class="scContent">suborder</span>"/&gt;</div>
5345                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5346                      <span class="scTag">value</span>="<span class="scContent">superfamily</span>"/&gt;</div>
5347                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5348                      <span class="scTag">value</span>="<span class="scContent">family</span>"/&gt;</div>
5349                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5350                      <span class="scTag">value</span>="<span class="scContent">subfamily</span>"/&gt;</div>
5351                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5352                      <span class="scTag">value</span>="<span class="scContent">supertribe</span>"/&gt;</div>
5353                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5354                      <span class="scTag">value</span>="<span class="scContent">tribe</span>"/&gt;</div>
5355                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5356                      <span class="scTag">value</span>="<span class="scContent">subtribe</span>"/&gt;</div>
5357                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5358                      <span class="scTag">value</span>="<span class="scContent">infratribe</span>"/&gt;</div>
5359                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5360                      <span class="scTag">value</span>="<span class="scContent">genus</span>"/&gt;</div>
5361                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5362                      <span class="scTag">value</span>="<span class="scContent">subgenus</span>"/&gt;</div>
5363                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5364                      <span class="scTag">value</span>="<span class="scContent">superspecies</span>"/&gt;</div>
5365                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5366                      <span class="scTag">value</span>="<span class="scContent">species</span>"/&gt;</div>
5367                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5368                      <span class="scTag">value</span>="<span class="scContent">subspecies</span>"/&gt;</div>
5369                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5370                      <span class="scTag">value</span>="<span class="scContent">variety</span>"/&gt;</div>
5371                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5372                      <span class="scTag">value</span>="<span class="scContent">subvariety</span>"/&gt;</div>
5373                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5374                      <span class="scTag">value</span>="<span class="scContent">form</span>"/&gt;</div>
5375                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5376                      <span class="scTag">value</span>="<span class="scContent">subform</span>"/&gt;</div>
5377                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5378                      <span class="scTag">value</span>="<span class="scContent">cultivar</span>"/&gt;</div>
5379                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5380                      <span class="scTag">value</span>="<span class="scContent">strain</span>"/&gt;</div>
5381                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5382                      <span class="scTag">value</span>="<span class="scContent">unknown</span>"/&gt;</div>
5383                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5384                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5385          </div>
5386          <script type="text/javascript">
5387 <!--
5388           setState('h518348337_scbox', false);
5389 // -->
5390 </script>
5391       </div>
5392       <div style="text-align: right; clear: both;">
5393          <a href="#top">top</a>
5394       </div>
5395       <hr/>
5396       <h3>Simple Type: <a name="h519911868" class="name">SequenceRelationType</a>
5397       </h3>
5398       <table class="hierarchy">
5399          <tr>
5400             <th>Super-types:</th>
5401             <td>
5402                <span class="type">
5403                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceRelationType</strong> (by restriction)</td>
5404          </tr>
5405          <tr>
5406             <th>Sub-types:</th>
5407             <td>None</td>
5408          </tr>
5409       </table>
5410       <table class="properties">
5411          <tr>
5412             <th>Name</th>
5413             <td>SequenceRelationType</td>
5414          </tr>
5415          <tr>
5416             <th>Used by (from the same schema document)</th>
5417             <td>Complex Type <b>
5418                   <a href="#h-802965662">SequenceRelation</a>
5419                </b>
5420             </td>
5421          </tr>
5422          <tr>
5423             <th>Content</th>
5424             <td>
5425                <ul>
5426                   <li>Base XSD Type: token</li>
5427                </ul>
5428                <ul>
5429                   <li>
5430                      <em>value</em> comes from list: {'orthology'|'one_to_one_orthology'|'super_orthology'|'paralogy'|'ultra_paralogy'|'xenology'|'unknown'|'other'}</li>
5431                </ul>
5432             </td>
5433          </tr>
5434       </table>
5435       <div class="sample box">
5436          <div>
5437             <input type="button" id="h519911868_diagram_button" class="control"
5438                    onclick="switchState('h519911868_diagram'); return false;"
5439                    style="display: none"/>
5440             <span class="caption">Diagram</span>
5441          </div>
5442          <div id="h519911868_diagram" class="contents">
5443             <img usemap="#h-465227925" src="schemaDiagrams/h-465227925.png"/>
5444             <!--
5445             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-465227925.map--><map name="h-465227925">
5446 </map>
5447          </div>
5448          <script type="text/javascript">
5449 <!--
5450           setState('h519911868_diagram', true);
5451 // -->
5452 </script>
5453       </div>
5454       <div class="schemaComponent box">
5455          <div>
5456             <input type="button" id="h519911868_scbox_button" class="control"
5457                    onclick="switchState('h519911868_scbox'); return false;"
5458                    style="display: none"/>
5459             <span class="caption">Schema Component Representation</span>
5460          </div>
5461          <div id="h519911868_scbox" class="contents">
5462             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5463                <span class="scTag">name</span>="<span class="scContent">SequenceRelationType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5464                   <span class="scTag">base</span>="<span class="scContent">
5465                      <span class="type">
5466                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5467                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5468                      <span class="scTag">value</span>="<span class="scContent">orthology</span>"/&gt;</div>
5469                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5470                      <span class="scTag">value</span>="<span class="scContent">one_to_one_orthology</span>"/&gt;</div>
5471                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5472                      <span class="scTag">value</span>="<span class="scContent">super_orthology</span>"/&gt;</div>
5473                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5474                      <span class="scTag">value</span>="<span class="scContent">paralogy</span>"/&gt;</div>
5475                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5476                      <span class="scTag">value</span>="<span class="scContent">ultra_paralogy</span>"/&gt;</div>
5477                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5478                      <span class="scTag">value</span>="<span class="scContent">xenology</span>"/&gt;</div>
5479                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5480                      <span class="scTag">value</span>="<span class="scContent">unknown</span>"/&gt;</div>
5481                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5482                      <span class="scTag">value</span>="<span class="scContent">other</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5483          </div>
5484          <script type="text/javascript">
5485 <!--
5486           setState('h519911868_scbox', false);
5487 // -->
5488 </script>
5489       </div>
5490       <div style="text-align: right; clear: both;">
5491          <a href="#top">top</a>
5492       </div>
5493       <hr/>
5494       <h3>Simple Type: <a name="h935679102" class="name">SequenceSymbol</a>
5495       </h3>
5496       <table class="hierarchy">
5497          <tr>
5498             <th>Super-types:</th>
5499             <td>
5500                <span class="type">
5501                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceSymbol</strong> (by restriction)</td>
5502          </tr>
5503          <tr>
5504             <th>Sub-types:</th>
5505             <td>None</td>
5506          </tr>
5507       </table>
5508       <table class="properties">
5509          <tr>
5510             <th>Name</th>
5511             <td>SequenceSymbol</td>
5512          </tr>
5513          <tr>
5514             <th>Used by (from the same schema document)</th>
5515             <td>Complex Type <b>
5516                   <a href="#h-1794244794">Sequence</a>
5517                </b>
5518             </td>
5519          </tr>
5520          <tr>
5521             <th>Content</th>
5522             <td>
5523                <ul>
5524                   <li>Base XSD Type: token</li>
5525                </ul>
5526                <ul>
5527                   <li>
5528                      <em>pattern</em> = \S{1,20}</li>
5529                </ul>
5530             </td>
5531          </tr>
5532       </table>
5533       <div class="sample box">
5534          <div>
5535             <input type="button" id="h935679102_diagram_button" class="control"
5536                    onclick="switchState('h935679102_diagram'); return false;"
5537                    style="display: none"/>
5538             <span class="caption">Diagram</span>
5539          </div>
5540          <div id="h935679102_diagram" class="contents">
5541             <img usemap="#h516473321" src="schemaDiagrams/h516473321.png"/>
5542             <!--
5543             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h516473321.map--><map name="h516473321">
5544 </map>
5545          </div>
5546          <script type="text/javascript">
5547 <!--
5548           setState('h935679102_diagram', true);
5549 // -->
5550 </script>
5551       </div>
5552       <div class="schemaComponent box">
5553          <div>
5554             <input type="button" id="h935679102_scbox_button" class="control"
5555                    onclick="switchState('h935679102_scbox'); return false;"
5556                    style="display: none"/>
5557             <span class="caption">Schema Component Representation</span>
5558          </div>
5559          <div id="h935679102_scbox" class="contents">
5560             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5561                <span class="scTag">name</span>="<span class="scContent">SequenceSymbol</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5562                   <span class="scTag">base</span>="<span class="scContent">
5563                      <span class="type">
5564                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5565                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
5566                      <span class="scTag">value</span>="<span class="scContent">\S{1,20}</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5567          </div>
5568          <script type="text/javascript">
5569 <!--
5570           setState('h935679102_scbox', false);
5571 // -->
5572 </script>
5573       </div>
5574       <div style="text-align: right; clear: both;">
5575          <a href="#top">top</a>
5576       </div>
5577       <hr/>
5578       <h3>Simple Type: <a name="h1408823200" class="name">SequenceType</a>
5579       </h3>
5580       <table class="hierarchy">
5581          <tr>
5582             <th>Super-types:</th>
5583             <td>
5584                <span class="type">
5585                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>SequenceType</strong> (by restriction)</td>
5586          </tr>
5587          <tr>
5588             <th>Sub-types:</th>
5589             <td>None</td>
5590          </tr>
5591       </table>
5592       <table class="properties">
5593          <tr>
5594             <th>Name</th>
5595             <td>SequenceType</td>
5596          </tr>
5597          <tr>
5598             <th>Used by (from the same schema document)</th>
5599             <td>Complex Type <b>
5600                   <a href="#h-1794244794">Sequence</a>
5601                </b>
5602             </td>
5603          </tr>
5604          <tr>
5605             <th>Content</th>
5606             <td>
5607                <ul>
5608                   <li>Base XSD Type: token</li>
5609                </ul>
5610                <ul>
5611                   <li>
5612                      <em>value</em> comes from list: {'rna'|'dna'|'protein'}</li>
5613                </ul>
5614             </td>
5615          </tr>
5616       </table>
5617       <div class="sample box">
5618          <div>
5619             <input type="button" id="h1408823200_diagram_button" class="control"
5620                    onclick="switchState('h1408823200_diagram'); return false;"
5621                    style="display: none"/>
5622             <span class="caption">Diagram</span>
5623          </div>
5624          <div id="h1408823200_diagram" class="contents">
5625             <img usemap="#h-2043228153" src="schemaDiagrams/h-2043228153.png"/>
5626             <!--
5627             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-2043228153.map--><map name="h-2043228153">
5628 </map>
5629          </div>
5630          <script type="text/javascript">
5631 <!--
5632           setState('h1408823200_diagram', true);
5633 // -->
5634 </script>
5635       </div>
5636       <div class="schemaComponent box">
5637          <div>
5638             <input type="button" id="h1408823200_scbox_button" class="control"
5639                    onclick="switchState('h1408823200_scbox'); return false;"
5640                    style="display: none"/>
5641             <span class="caption">Schema Component Representation</span>
5642          </div>
5643          <div id="h1408823200_scbox" class="contents">
5644             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5645                <span class="scTag">name</span>="<span class="scContent">SequenceType</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5646                   <span class="scTag">base</span>="<span class="scContent">
5647                      <span class="type">
5648                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5649                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5650                      <span class="scTag">value</span>="<span class="scContent">rna</span>"/&gt;</div>
5651                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5652                      <span class="scTag">value</span>="<span class="scContent">dna</span>"/&gt;</div>
5653                   <div style="margin-left: 1.5em">&lt;<span class="scTag">xs:enumeration</span>
5654                      <span class="scTag">value</span>="<span class="scContent">protein</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5655          </div>
5656          <script type="text/javascript">
5657 <!--
5658           setState('h1408823200_scbox', false);
5659 // -->
5660 </script>
5661       </div>
5662       <div style="text-align: right; clear: both;">
5663          <a href="#top">top</a>
5664       </div>
5665       <hr/>
5666       <h3>Simple Type: <a name="h712147427" class="name">TaxonomyCode</a>
5667       </h3>
5668       <table class="hierarchy">
5669          <tr>
5670             <th>Super-types:</th>
5671             <td>
5672                <span class="type">
5673                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>TaxonomyCode</strong> (by restriction)</td>
5674          </tr>
5675          <tr>
5676             <th>Sub-types:</th>
5677             <td>None</td>
5678          </tr>
5679       </table>
5680       <table class="properties">
5681          <tr>
5682             <th>Name</th>
5683             <td>TaxonomyCode</td>
5684          </tr>
5685          <tr>
5686             <th>Used by (from the same schema document)</th>
5687             <td>Complex Type <b>
5688                   <a href="#h888650454">Taxonomy</a>
5689                </b>
5690             </td>
5691          </tr>
5692          <tr>
5693             <th>Content</th>
5694             <td>
5695                <ul>
5696                   <li>Base XSD Type: token</li>
5697                </ul>
5698                <ul>
5699                   <li>
5700                      <em>pattern</em> = [a-zA-Z0-9_]{2,10}</li>
5701                </ul>
5702             </td>
5703          </tr>
5704       </table>
5705       <div class="sample box">
5706          <div>
5707             <input type="button" id="h712147427_diagram_button" class="control"
5708                    onclick="switchState('h712147427_diagram'); return false;"
5709                    style="display: none"/>
5710             <span class="caption">Diagram</span>
5711          </div>
5712          <div id="h712147427_diagram" class="contents">
5713             <img usemap="#h516707748" src="schemaDiagrams/h516707748.png"/>
5714             <!--
5715             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h516707748.map--><map name="h516707748">
5716 </map>
5717          </div>
5718          <script type="text/javascript">
5719 <!--
5720           setState('h712147427_diagram', true);
5721 // -->
5722 </script>
5723       </div>
5724       <div class="schemaComponent box">
5725          <div>
5726             <input type="button" id="h712147427_scbox_button" class="control"
5727                    onclick="switchState('h712147427_scbox'); return false;"
5728                    style="display: none"/>
5729             <span class="caption">Schema Component Representation</span>
5730          </div>
5731          <div id="h712147427_scbox" class="contents">
5732             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5733                <span class="scTag">name</span>="<span class="scContent">TaxonomyCode</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5734                   <span class="scTag">base</span>="<span class="scContent">
5735                      <span class="type">
5736                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5737                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
5738                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]{2,10}</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5739          </div>
5740          <script type="text/javascript">
5741 <!--
5742           setState('h712147427_scbox', false);
5743 // -->
5744 </script>
5745       </div>
5746       <div style="text-align: right; clear: both;">
5747          <a href="#top">top</a>
5748       </div>
5749       <hr/>
5750       <h3>Simple Type: <a name="h577349652" class="name">id_ref</a>
5751       </h3>
5752       <table class="hierarchy">
5753          <tr>
5754             <th>Super-types:</th>
5755             <td>
5756                <span class="type">
5757                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span> &lt; <strong>id_ref</strong> (by restriction)</td>
5758          </tr>
5759          <tr>
5760             <th>Sub-types:</th>
5761             <td>None</td>
5762          </tr>
5763       </table>
5764       <table class="properties">
5765          <tr>
5766             <th>Name</th>
5767             <td>id_ref</td>
5768          </tr>
5769          <tr>
5770             <th>Used by (from the same schema document)</th>
5771             <td>Complex Type <b>
5772                   <a href="#h-1794244794">Sequence</a>
5773                </b>, Complex Type <b>
5774                   <a href="#h158033242">Property</a>
5775                </b>, Complex Type <b>
5776                   <a href="#h-802965662">SequenceRelation</a>
5777                </b>, Complex Type <b>
5778                   <a href="#h-802965662">SequenceRelation</a>
5779                </b>, Complex Type <b>
5780                   <a href="#h192331856">CladeRelation</a>
5781                </b>, Complex Type <b>
5782                   <a href="#h192331856">CladeRelation</a>
5783                </b>
5784             </td>
5785          </tr>
5786          <tr>
5787             <th>Content</th>
5788             <td>
5789                <ul>
5790                   <li>Base XSD Type: IDREF</li>
5791                </ul>
5792             </td>
5793          </tr>
5794       </table>
5795       <div class="sample box">
5796          <div>
5797             <input type="button" id="h577349652_diagram_button" class="control"
5798                    onclick="switchState('h577349652_diagram'); return false;"
5799                    style="display: none"/>
5800             <span class="caption">Diagram</span>
5801          </div>
5802          <div id="h577349652_diagram" class="contents">
5803             <img usemap="#h813803539" src="schemaDiagrams/h813803539.png"/>
5804             <!--
5805             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h813803539.map--><map name="h813803539">
5806 </map>
5807          </div>
5808          <script type="text/javascript">
5809 <!--
5810           setState('h577349652_diagram', true);
5811 // -->
5812 </script>
5813       </div>
5814       <div class="schemaComponent box">
5815          <div>
5816             <input type="button" id="h577349652_scbox_button" class="control"
5817                    onclick="switchState('h577349652_scbox'); return false;"
5818                    style="display: none"/>
5819             <span class="caption">Schema Component Representation</span>
5820          </div>
5821          <div id="h577349652_scbox" class="contents">
5822             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5823                <span class="scTag">name</span>="<span class="scContent">id_ref</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5824                   <span class="scTag">base</span>="<span class="scContent">
5825                      <span class="type">
5826                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:IDREF</span>
5827                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5828          </div>
5829          <script type="text/javascript">
5830 <!--
5831           setState('h577349652_scbox', false);
5832 // -->
5833 </script>
5834       </div>
5835       <div style="text-align: right; clear: both;">
5836          <a href="#top">top</a>
5837       </div>
5838       <hr/>
5839       <h3>Simple Type: <a name="h-1482113798" class="name">id_source</a>
5840       </h3>
5841       <table class="hierarchy">
5842          <tr>
5843             <th>Super-types:</th>
5844             <td>
5845                <span class="type">
5846                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span> &lt; <strong>id_source</strong> (by restriction)</td>
5847          </tr>
5848          <tr>
5849             <th>Sub-types:</th>
5850             <td>None</td>
5851          </tr>
5852       </table>
5853       <table class="properties">
5854          <tr>
5855             <th>Name</th>
5856             <td>id_source</td>
5857          </tr>
5858          <tr>
5859             <th>Used by (from the same schema document)</th>
5860             <td>Complex Type <b>
5861                   <a href="#h-1124608460">Clade</a>
5862                </b>, Complex Type <b>
5863                   <a href="#h888650454">Taxonomy</a>
5864                </b>, Complex Type <b>
5865                   <a href="#h-1794244794">Sequence</a>
5866                </b>
5867             </td>
5868          </tr>
5869          <tr>
5870             <th>Content</th>
5871             <td>
5872                <ul>
5873                   <li>Base XSD Type: ID</li>
5874                </ul>
5875             </td>
5876          </tr>
5877       </table>
5878       <div class="sample box">
5879          <div>
5880             <input type="button" id="h-1482113798_diagram_button" class="control"
5881                    onclick="switchState('h-1482113798_diagram'); return false;"
5882                    style="display: none"/>
5883             <span class="caption">Diagram</span>
5884          </div>
5885          <div id="h-1482113798_diagram" class="contents">
5886             <img usemap="#h123518701" src="schemaDiagrams/h123518701.png"/>
5887             <!--
5888             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h123518701.map--><map name="h123518701">
5889 </map>
5890          </div>
5891          <script type="text/javascript">
5892 <!--
5893           setState('h-1482113798_diagram', true);
5894 // -->
5895 </script>
5896       </div>
5897       <div class="schemaComponent box">
5898          <div>
5899             <input type="button" id="h-1482113798_scbox_button" class="control"
5900                    onclick="switchState('h-1482113798_scbox'); return false;"
5901                    style="display: none"/>
5902             <span class="caption">Schema Component Representation</span>
5903          </div>
5904          <div id="h-1482113798_scbox" class="contents">
5905             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5906                <span class="scTag">name</span>="<span class="scContent">id_source</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5907                   <span class="scTag">base</span>="<span class="scContent">
5908                      <span class="type">
5909                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:ID</span>
5910                   </span>"/&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5911          </div>
5912          <script type="text/javascript">
5913 <!--
5914           setState('h-1482113798_scbox', false);
5915 // -->
5916 </script>
5917       </div>
5918       <div style="text-align: right; clear: both;">
5919          <a href="#top">top</a>
5920       </div>
5921       <hr/>
5922       <h3>Simple Type: <a name="h-675984882" class="name">ref</a>
5923       </h3>
5924       <table class="hierarchy">
5925          <tr>
5926             <th>Super-types:</th>
5927             <td>
5928                <span class="type">
5929                   <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span> &lt; <strong>ref</strong> (by restriction)</td>
5930          </tr>
5931          <tr>
5932             <th>Sub-types:</th>
5933             <td>None</td>
5934          </tr>
5935       </table>
5936       <table class="properties">
5937          <tr>
5938             <th>Name</th>
5939             <td>ref</td>
5940          </tr>
5941          <tr>
5942             <th>Used by (from the same schema document)</th>
5943             <td>Complex Type <b>
5944                   <a href="#h917087604">Annotation</a>
5945                </b>, Complex Type <b>
5946                   <a href="#h158033242">Property</a>
5947                </b>, Complex Type <b>
5948                   <a href="#h158033242">Property</a>
5949                </b>
5950             </td>
5951          </tr>
5952          <tr>
5953             <th>Content</th>
5954             <td>
5955                <ul>
5956                   <li>Base XSD Type: token</li>
5957                </ul>
5958                <ul>
5959                   <li>
5960                      <em>pattern</em> = [a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+</li>
5961                </ul>
5962             </td>
5963          </tr>
5964       </table>
5965       <div class="sample box">
5966          <div>
5967             <input type="button" id="h-675984882_diagram_button" class="control"
5968                    onclick="switchState('h-675984882_diagram'); return false;"
5969                    style="display: none"/>
5970             <span class="caption">Diagram</span>
5971          </div>
5972          <div id="h-675984882_diagram" class="contents">
5973             <img usemap="#h-1056119207" src="schemaDiagrams/h-1056119207.png"/>
5974             <!--
5975             Map ref: file:/home/czmasek/SOFTWARE_DEV/ECLIPSE_WORKSPACE/forester-atv/resources/phyloxml_schema/1.10//schemaDiagrams/h-1056119207.map--><map name="h-1056119207">
5976 </map>
5977          </div>
5978          <script type="text/javascript">
5979 <!--
5980           setState('h-675984882_diagram', true);
5981 // -->
5982 </script>
5983       </div>
5984       <div class="schemaComponent box">
5985          <div>
5986             <input type="button" id="h-675984882_scbox_button" class="control"
5987                    onclick="switchState('h-675984882_scbox'); return false;"
5988                    style="display: none"/>
5989             <span class="caption">Schema Component Representation</span>
5990          </div>
5991          <div id="h-675984882_scbox" class="contents">
5992             <div style="margin-left: 0em">&lt;<span class="scTag">xs:simpleType</span>
5993                <span class="scTag">name</span>="<span class="scContent">ref</span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:restriction</span>
5994                   <span class="scTag">base</span>="<span class="scContent">
5995                      <span class="type">
5996                         <a href="#ns_xs" title="Find out namespace of 'xs' prefix">xs</a>:token</span>
5997                   </span>"&gt;<div style="margin-left: 1.5em">&lt;<span class="scTag">xs:pattern</span>
5998                      <span class="scTag">value</span>="<span class="scContent">[a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s]+</span>"/&gt;</div>&lt;/<span class="scTag">xs:restriction</span>&gt;</div>&lt;/<span class="scTag">xs:simpleType</span>&gt;</div>
5999          </div>
6000          <script type="text/javascript">
6001 <!--
6002           setState('h-675984882_scbox', false);
6003 // -->
6004 </script>
6005       </div>
6006       <div style="text-align: right; clear: both;">
6007          <a href="#top">top</a>
6008       </div>
6009       <hr/>
6010       <div id="legend">
6011          <h2>
6012             <a name="Legend">Legend</a>
6013          </h2>
6014          <div style="float: left; width: 15em;">
6015             <h3 style="margin-bottom: 0px;">Complex Type:</h3>
6016             <div class="hint" style="margin-left: 0em;">Schema Component Type</div>
6017          </div>
6018          <div style="float: left; width: 15em;">
6019             <h3 style="margin-bottom: 0px;">
6020                <span class="name">AusAddress</span>
6021             </h3>
6022             <div class="hint" style="margin-left: 0em;">Schema Component Name</div>
6023          </div>
6024          <table class="hierarchy" style="clear : both">
6025             <tr>
6026                <th>Super-types:</th>
6027                <td>
6028                   <span class="type" style="color: #0000FF; text-decoration:underline;">Address</span> &lt; <span class="current">AusAddress</span> (by extension)</td>
6029             </tr>
6030             <tr>
6031                <th>Sub-types:</th>
6032                <td>
6033                   <ul>
6034                      <li>
6035                         <span class="type" style="color: #0000FF; text-decoration:underline;">QLDAddress</span> (by restriction)</li>
6036                   </ul>
6037                </td>
6038             </tr>
6039          </table>
6040          <div class="hint">If this schema component is a type definition, its type hierarchy is shown in a gray-bordered box.</div>
6041          <table class="properties">
6042             <tr>
6043                <th>Name</th>
6044                <td>AusAddress</td>
6045             </tr>
6046             <tr>
6047                <th>
6048                   <a title="Look up 'Abstract' in glossary" href="phyloxml.xsd.html#term_Abstract">Abstract</a>
6049                </th>
6050                <td>no</td>
6051             </tr>
6052          </table>
6053          <div class="hint">The table above displays the properties of this schema component.</div>
6054          <div class="sample box">
6055             <div>
6056                <span class="caption">XML Instance Representation</span>
6057             </div>
6058             <div class="contents">
6059                <span style="margin-left: 0em">&lt;...</span>
6060                <span class="newFields">
6061                   <span> country="<span class="fixed">Australia</span>"</span>
6062                </span>&gt; <br/>
6063                <span style="margin-left: 1.5em" class="inherited">&lt;unitNo&gt; <span class="type">string</span> &lt;/unitNo&gt; <span class="occurs">[0..1]</span>
6064                </span>
6065                <br/>
6066                <span style="margin-left: 1.5em" class="inherited">&lt;houseNo&gt; <span class="type">string</span> &lt;/houseNo&gt; <span class="occurs">[1]</span>
6067                </span>
6068                <br/>
6069                <span style="margin-left: 1.5em" class="inherited">&lt;street&gt; <span class="type">string</span> &lt;/street&gt; <span class="occurs">[1]</span>
6070                </span>
6071                <br/>
6072                <span class="group" style="margin-left: 1.5em">Start <a title="Look up 'Choice' in glossary" href="#term_Choice">Choice</a>
6073                   <span class="occurs">[1]</span>
6074                </span>
6075                <br/>
6076                <span style="margin-left: 3em" class="inherited">&lt;city&gt; <span class="type">string</span> &lt;/city&gt; <span class="occurs">[1]</span>
6077                </span>
6078                <br/>
6079                <span style="margin-left: 3em" class="inherited">&lt;town&gt; <span class="type">string</span> &lt;/town&gt; <span class="occurs">[1]</span>
6080                </span>
6081                <br/>
6082                <span class="group" style="margin-left: 1.5em">End Choice</span>
6083                <br/>
6084                <span class="newFields">
6085                   <span style="margin-left: 1.5em">&lt;state&gt; <span class="type" style="text-decoration:underline;">AusStates</span> &lt;/state&gt; <span class="occurs">[1]</span>
6086                   </span>
6087                   <br/>
6088                   <span style="margin-left: 1.5em">&lt;postcode&gt; <span class="constraint">string &lt;&lt;<em>pattern</em> = [1-9][0-9]{3}&gt;&gt;</span> &lt;/postcode&gt; <span class="occurs">[1]</span>
6089                      <a href="javascript:void(0)" title="View Documentation" class="documentation"
6090                         onclick="docArray = new Array('Post code must be a four-digit number.'); viewDocumentation('Element', 'postcode', docArray);">?</a>
6091                   </span>
6092                   <br/>
6093                </span>
6094                <span style="margin-left: 0em">&lt;/...&gt;</span>
6095                <br/>
6096             </div>
6097          </div>
6098          <div class="hint">
6099             <p>The XML Instance Representation table above shows the schema component's content as an XML instance.</p>
6100             <ul>
6101                <li>The minimum and maximum occurrence of elements and attributes are provided in square brackets, e.g. [0..1].</li>
6102                <li>Model group information are shown in gray, e.g. Start Choice ... End Choice.</li>
6103                <li>For type derivations, the elements and attributes that have been added to or changed from the base type's content are shown in <span style="font-weight: bold">bold</span>.</li>
6104                <li>If an element/attribute has a fixed value, the fixed value is shown in green, e.g. country="Australia".</li>
6105                <li>Otherwise, the type of the element/attribute is displayed.
6106                <ul>
6107                      <li>If the element/attribute's type is in the schema, a link is provided to it.</li>
6108                      <li>For local simple type definitions, the constraints are displayed in angle brackets, e.g. &lt;&lt;<em>pattern</em> = [1-9][0-9]{3}&gt;&gt;.</li>
6109                   </ul>
6110                </li>
6111                <li>If a local element/attribute has documentation, it will be displayed in a window that pops up when the question mark inside the attribute or next to the element is clicked, e.g. &lt;postcode&gt;.</li>
6112             </ul>
6113          </div>
6114          <div class="schemaComponent box">
6115             <div>
6116                <span class="caption">Schema Component Representation</span>
6117             </div>
6118             <div class="contents">
6119                <span style="margin-left: 0em">&lt;<span class="scTag">complexType</span>
6120                   <span class="scTag">name</span>="<span class="scContent">AusAddress</span>"&gt;</span>
6121                <br/>
6122                <span style="margin-left: 1.5em">&lt;<span class="scTag">complexContent</span>&gt;</span>
6123                <br/>
6124                <span style="margin-left: 3em">&lt;<span class="scTag">extension</span>
6125                   <span class="scTag">base</span>="<span class="scContent">
6126                      <span class="type" style="text-decoration:underline;">Address</span>
6127                   </span>"&gt;</span>
6128                <br/>
6129                <span style="margin-left: 4.5em">&lt;<span class="scTag">sequence</span>&gt;</span>
6130                <br/>
6131                <span style="margin-left: 6em">&lt;<span class="scTag">element</span>
6132                   <span class="scTag">name</span>="<span class="scContent">state</span>" <span class="scTag">type</span>="<span class="scContent">
6133                      <span class="type" style="text-decoration:underline;">AusStates</span>
6134                   </span>"/&gt;</span>
6135                <br/>
6136                <span style="margin-left: 6em">&lt;<span class="scTag">element</span>
6137                   <span class="scTag">name</span>="<span class="scContent">postcode</span>"&gt;</span>
6138                <br/>
6139                <span style="margin-left: 7.5em">&lt;<span class="scTag">simpleType</span>&gt;</span>
6140                <br/>
6141                <span style="margin-left: 9em">&lt;<span class="scTag">restriction</span>
6142                   <span class="scTag">base</span>="<span class="scContent">
6143                      <span class="type">string</span>
6144                   </span>"&gt;</span>
6145                <br/>
6146                <span style="margin-left: 10.5em">&lt;<span class="scTag">pattern</span>
6147                   <span class="scTag">value</span>="<span class="scContent">[1-9][0-9]{3}</span>"/&gt;</span>
6148                <br/>
6149                <span style="margin-left: 9em">&lt;/<span class="scTag">restriction</span>&gt;</span>
6150                <br/>
6151                <span style="margin-left: 7.5em">&lt;/<span class="scTag">simpleType</span>&gt;</span>
6152                <br/>
6153                <span style="margin-left: 6em">&lt;/<span class="scTag">element</span>&gt;</span>
6154                <br/>
6155                <span style="margin-left: 4.5em">&lt;/<span class="scTag">sequence</span>&gt;</span>
6156                <br/>
6157                <span style="margin-left: 4.5em">&lt;<span class="scTag">attribute</span>
6158                   <span class="scTag">name</span>="<span class="scContent">country</span>" <span class="scTag">type</span>="<span class="scContent">
6159                      <span class="type">string</span>
6160                   </span>" <span class="scTag">fixed</span>="<span class="scContent">Australia</span>"/&gt;</span>
6161                <br/>
6162                <span style="margin-left: 3em">&lt;/<span class="scTag">extension</span>&gt;</span>
6163                <br/>
6164                <span style="margin-left: 1.5em">&lt;/<span class="scTag">complexContent</span>&gt;</span>
6165                <br/>
6166                <span style="margin-left: 0em">&lt;/<span class="scTag">complexType</span>&gt;</span>
6167                <br/>
6168             </div>
6169          </div>
6170          <div class="hint">The Schema Component Representation table above displays the underlying XML representation of the schema component. (Annotations are not shown.)</div>
6171          <div style="text-align: right; clear: both;">
6172             <a href="#top">top</a>
6173          </div>
6174          <hr/>
6175       </div>
6176       <div id="glossary">
6177          <h2>
6178             <a name="Glossary">Glossary</a>
6179          </h2>
6180          <p>
6181             <span class="glossaryTerm">
6182                <a name="term_Abstract">Abstract</a>
6183             </span>(Applies to complex type definitions and element declarations). An abstract element or complex type cannot used to validate an element instance. If there is a reference to an abstract element, only element declarations that can substitute the abstract element can be used to validate the instance. For references to abstract type definitions, only derived types can be used.</p>
6184          <p>
6185             <span class="glossaryTerm">
6186                <a name="term_All">All Model Group</a>
6187             </span>Child elements can be provided <em>in any order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-all"
6188                href="http://www.w3.org/TR/xmlschema-1/#element-all">http://www.w3.org/TR/xmlschema-1/#element-all</a>.</p>
6189          <p>
6190             <span class="glossaryTerm">
6191                <a name="term_Choice">Choice Model Group</a>
6192             </span>
6193             <em>Only one</em> from the list of child elements and model groups can be provided in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-choice"
6194                href="http://www.w3.org/TR/xmlschema-1/#element-choice">http://www.w3.org/TR/xmlschema-1/#element-choice</a>.</p>
6195          <p>
6196             <span class="glossaryTerm">
6197                <a name="term_CollapseWS">Collapse Whitespace Policy</a>
6198             </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32). Then, collapse contiguous sequences of space characters into single space character, and remove leading and trailing space characters.</p>
6199          <p>
6200             <span class="glossaryTerm">
6201                <a name="term_ElemBlock">Disallowed Substitutions</a>
6202             </span>(Applies to element declarations). If <em>substitution</em> is specified, then <a title="Look up 'substitution group' in glossary"
6203                href="phyloxml.xsd.html#term_SubGroup">substitution group</a> members cannot be used in place of the given element declaration to validate element instances. If <em>derivation methods</em>, e.g. extension, restriction, are specified, then the given element declaration will not validate element instances that have types derived from the element declaration's type using the specified derivation methods. Normally, element instances can override their declaration's type by specifying an <code>xsi:type</code> attribute.</p>
6204          <p>
6205             <span class="glossaryTerm">
6206                <a name="term_Key">Key Constraint</a>
6207             </span>Like <a title="Look up 'Uniqueness Constraint' in glossary"
6208                href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>, but additionally requires that the specified value(s) must be provided. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6209                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6210          <p>
6211             <span class="glossaryTerm">
6212                <a name="term_KeyRef">Key Reference Constraint</a>
6213             </span>Ensures that the specified value(s) must match value(s) from a <a title="Look up 'Key Constraint' in glossary" href="phyloxml.xsd.html#term_Key">Key Constraint</a> or <a title="Look up 'Uniqueness Constraint' in glossary"
6214                href="phyloxml.xsd.html#term_Unique">Uniqueness Constraint</a>. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6215                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6216          <p>
6217             <span class="glossaryTerm">
6218                <a name="term_ModelGroup">Model Group</a>
6219             </span>Groups together element content, specifying the order in which the element content can occur and the number of times the group of element content may be repeated. See: <a title="http://www.w3.org/TR/xmlschema-1/#Model_Groups"
6220                href="http://www.w3.org/TR/xmlschema-1/#Model_Groups">http://www.w3.org/TR/xmlschema-1/#Model_Groups</a>.</p>
6221          <p>
6222             <span class="glossaryTerm">
6223                <a name="term_Nillable">Nillable</a>
6224             </span>(Applies to element declarations). If an element declaration is nillable, instances can use the <code>xsi:nil</code> attribute. The <code>xsi:nil</code> attribute is the boolean attribute, <em>nil</em>, from the <em>http://www.w3.org/2001/XMLSchema-instance</em> namespace. If an element instance has an <code>xsi:nil</code> attribute set to true, it can be left empty, even though its element declaration may have required content.</p>
6225          <p>
6226             <span class="glossaryTerm">
6227                <a name="term_Notation">Notation</a>
6228             </span>A notation is used to identify the format of a piece of data. Values of elements and attributes that are of type, NOTATION, must come from the names of declared notations. See: <a title="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations"
6229                href="http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations">http://www.w3.org/TR/xmlschema-1/#cNotation_Declarations</a>.</p>
6230          <p>
6231             <span class="glossaryTerm">
6232                <a name="term_PreserveWS">Preserve Whitespace Policy</a>
6233             </span>Preserve whitespaces exactly as they appear in instances.</p>
6234          <p>
6235             <span class="glossaryTerm">
6236                <a name="term_TypeFinal">Prohibited Derivations</a>
6237             </span>(Applies to type definitions). Derivation methods that cannot be used to create sub-types from a given type definition.</p>
6238          <p>
6239             <span class="glossaryTerm">
6240                <a name="term_TypeBlock">Prohibited Substitutions</a>
6241             </span>(Applies to complex type definitions). Prevents sub-types that have been derived using the specified derivation methods from validating element instances in place of the given type definition.</p>
6242          <p>
6243             <span class="glossaryTerm">
6244                <a name="term_ReplaceWS">Replace Whitespace Policy</a>
6245             </span>Replace tab, line feed, and carriage return characters with space character (Unicode character 32).</p>
6246          <p>
6247             <span class="glossaryTerm">
6248                <a name="term_Sequence">Sequence Model Group</a>
6249             </span>Child elements and model groups must be provided <em>in the specified order</em> in instances. See: <a title="http://www.w3.org/TR/xmlschema-1/#element-sequence"
6250                href="http://www.w3.org/TR/xmlschema-1/#element-sequence">http://www.w3.org/TR/xmlschema-1/#element-sequence</a>.</p>
6251          <p>
6252             <span class="glossaryTerm">
6253                <a name="term_SubGroup">Substitution Group</a>
6254             </span>Elements that are <em>members</em> of a substitution group can be used wherever the <em>head</em> element of the substitution group is referenced.</p>
6255          <p>
6256             <span class="glossaryTerm">
6257                <a name="term_ElemFinal">Substitution Group Exclusions</a>
6258             </span>(Applies to element declarations). Prohibits element declarations from nominating themselves as being able to substitute a given element declaration, if they have types that are derived from the original element's type using the specified derivation methods.</p>
6259          <p>
6260             <span class="glossaryTerm">
6261                <a name="term_TargetNS">Target Namespace</a>
6262             </span>The target namespace identifies the namespace that components in this schema belongs to. If no target namespace is provided, then the schema components do not belong to any namespace.</p>
6263          <p>
6264             <span class="glossaryTerm">
6265                <a name="term_Unique">Uniqueness Constraint</a>
6266             </span>Ensures uniqueness of an element/attribute value, or a combination of values, within a specified scope. See: <a title="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions"
6267                href="http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions">http://www.w3.org/TR/xmlschema-1/#cIdentity-constraint_Definitions</a>.</p>
6268          <div style="text-align: right; clear: both;">
6269             <a href="#top">top</a>
6270          </div>
6271          <hr/>
6272       </div>
6273       <p class="footer">Generated by <a href="http://www.oxygenxml.com">&lt;oXygen/&gt; XML Editor</a> using a modified version of <a href="http://titanium.dstc.edu.au/xml/xs3p">xs3p</a> that adds schema diagrams and chunking support. Last modified: <script type="text/javascript">
6274 <!--
6275           document.write(document.lastModified);
6276 // -->
6277 </script>
6278       </p>
6279    </body>
6280 </html>