inprogress
[jalview.git] / forester / phyloxml / oxygen / phyloxml_oxygen_project.xpr
1 <?xml version="1.0" encoding="UTF-8"?>
2 <project>
3     <meta>
4         <filters directoryPatterns="" filePatterns=""
5             positiveFilePatterns="" showHiddenFiles="false"/>
6         <options>
7             <serialized>
8                 <map>
9                     <entry>
10                         <String xml:space="preserve">scenario.associations</String>
11                         <scenarioAssociation-array>
12                             <scenarioAssociation>
13                                 <field name="name">
14                                     <String xml:space="preserve">phyloxml_test_document_2</String>
15                                 </field>
16                                 <field name="type">
17                                     <String xml:space="preserve">XSL</String>
18                                 </field>
19                                 <field name="url">
20                                     <String xml:space="preserve">phyloxml_test_document_2.xml</String>
21                                 </field>
22                             </scenarioAssociation>
23                         </scenarioAssociation-array>
24                     </entry>
25                     <entry>
26                         <String xml:space="preserve">scenarios</String>
27                         <scenario-array>
28                             <scenario>
29                                 <field name="name">
30                                     <String xml:space="preserve">Execute DDXQuery</String>
31                                 </field>
32                                 <field name="baseURL">
33                                     <String xml:space="preserve"></String>
34                                 </field>
35                                 <field name="footerURL">
36                                     <String xml:space="preserve"></String>
37                                 </field>
38                                 <field name="fOPMethod">
39                                     <null/>
40                                 </field>
41                                 <field name="fOProcessorName">
42                                     <null/>
43                                 </field>
44                                 <field name="headerURL">
45                                     <String xml:space="preserve"></String>
46                                 </field>
47                                 <field name="inputXSLURL">
48                                     <String xml:space="preserve">${currentFileURL}</String>
49                                 </field>
50                                 <field name="inputXMLURL">
51                                     <String xml:space="preserve"></String>
52                                 </field>
53                                 <field name="defaultScenario">
54                                     <Boolean xml:space="preserve">false</Boolean>
55                                 </field>
56                                 <field name="isFOPPerforming">
57                                     <Boolean xml:space="preserve">false</Boolean>
58                                 </field>
59                                 <field name="type">
60                                     <String xml:space="preserve">DD_XQUERY</String>
61                                 </field>
62                                 <field name="saveAs">
63                                     <Boolean xml:space="preserve">true</Boolean>
64                                 </field>
65                                 <field name="openInBrowser">
66                                     <Boolean xml:space="preserve">false</Boolean>
67                                 </field>
68                                 <field name="outputFile">
69                                     <null/>
70                                 </field>
71                                 <field name="openOtherLocationInBrowser">
72                                     <Boolean xml:space="preserve">false</Boolean>
73                                 </field>
74                                 <field name="locationToOpenInBrowserURL">
75                                     <String xml:space="preserve"></String>
76                                 </field>
77                                 <field name="openInEditor">
78                                     <Boolean xml:space="preserve">false</Boolean>
79                                 </field>
80                                 <field name="showInHTMLPane">
81                                     <Boolean xml:space="preserve">false</Boolean>
82                                 </field>
83                                 <field name="showInXMLPane">
84                                     <Boolean xml:space="preserve">true</Boolean>
85                                 </field>
86                                 <field name="showInSVGPane">
87                                     <Boolean xml:space="preserve">false</Boolean>
88                                 </field>
89                                 <field name="useXSLTInput">
90                                     <Boolean xml:space="preserve">true</Boolean>
91                                 </field>
92                                 <field name="xsltParams">
93                                     <list/>
94                                 </field>
95                                 <field name="cascadingStylesheets">
96                                     <String-array/>
97                                 </field>
98                                 <field name="xslTransformer">
99                                     <String xml:space="preserve">DataDirect</String>
100                                 </field>
101                                 <field name="extensionURLs">
102                                     <String-array/>
103                                 </field>
104                             </scenario>
105                             <scenario>
106                                 <field name="name">
107                                     <String xml:space="preserve">Execute SQL</String>
108                                 </field>
109                                 <field name="baseURL">
110                                     <String xml:space="preserve"></String>
111                                 </field>
112                                 <field name="footerURL">
113                                     <String xml:space="preserve"></String>
114                                 </field>
115                                 <field name="fOPMethod">
116                                     <null/>
117                                 </field>
118                                 <field name="fOProcessorName">
119                                     <null/>
120                                 </field>
121                                 <field name="headerURL">
122                                     <String xml:space="preserve"></String>
123                                 </field>
124                                 <field name="inputXSLURL">
125                                     <String xml:space="preserve">${currentFileURL}</String>
126                                 </field>
127                                 <field name="inputXMLURL">
128                                     <String xml:space="preserve"></String>
129                                 </field>
130                                 <field name="defaultScenario">
131                                     <Boolean xml:space="preserve">false</Boolean>
132                                 </field>
133                                 <field name="isFOPPerforming">
134                                     <Boolean xml:space="preserve">false</Boolean>
135                                 </field>
136                                 <field name="type">
137                                     <String xml:space="preserve">SQL</String>
138                                 </field>
139                                 <field name="saveAs">
140                                     <Boolean xml:space="preserve">true</Boolean>
141                                 </field>
142                                 <field name="openInBrowser">
143                                     <Boolean xml:space="preserve">false</Boolean>
144                                 </field>
145                                 <field name="outputFile">
146                                     <null/>
147                                 </field>
148                                 <field name="openOtherLocationInBrowser">
149                                     <Boolean xml:space="preserve">false</Boolean>
150                                 </field>
151                                 <field name="locationToOpenInBrowserURL">
152                                     <String xml:space="preserve"></String>
153                                 </field>
154                                 <field name="openInEditor">
155                                     <Boolean xml:space="preserve">false</Boolean>
156                                 </field>
157                                 <field name="showInHTMLPane">
158                                     <Boolean xml:space="preserve">false</Boolean>
159                                 </field>
160                                 <field name="showInXMLPane">
161                                     <Boolean xml:space="preserve">false</Boolean>
162                                 </field>
163                                 <field name="showInSVGPane">
164                                     <Boolean xml:space="preserve">false</Boolean>
165                                 </field>
166                                 <field name="useXSLTInput">
167                                     <Boolean xml:space="preserve">true</Boolean>
168                                 </field>
169                                 <field name="xsltParams">
170                                     <list/>
171                                 </field>
172                                 <field name="cascadingStylesheets">
173                                     <String-array/>
174                                 </field>
175                                 <field name="xslTransformer">
176                                     <String xml:space="preserve">JDBC</String>
177                                 </field>
178                                 <field name="extensionURLs">
179                                     <String-array/>
180                                 </field>
181                             </scenario>
182                             <scenario>
183                                 <field name="name">
184                                     <String xml:space="preserve">Execute XQuery</String>
185                                 </field>
186                                 <field name="baseURL">
187                                     <String xml:space="preserve"></String>
188                                 </field>
189                                 <field name="footerURL">
190                                     <String xml:space="preserve"></String>
191                                 </field>
192                                 <field name="fOPMethod">
193                                     <null/>
194                                 </field>
195                                 <field name="fOProcessorName">
196                                     <null/>
197                                 </field>
198                                 <field name="headerURL">
199                                     <String xml:space="preserve"></String>
200                                 </field>
201                                 <field name="inputXSLURL">
202                                     <String xml:space="preserve">${currentFileURL}</String>
203                                 </field>
204                                 <field name="inputXMLURL">
205                                     <String xml:space="preserve"></String>
206                                 </field>
207                                 <field name="defaultScenario">
208                                     <Boolean xml:space="preserve">false</Boolean>
209                                 </field>
210                                 <field name="isFOPPerforming">
211                                     <Boolean xml:space="preserve">false</Boolean>
212                                 </field>
213                                 <field name="type">
214                                     <String xml:space="preserve">XQUERY</String>
215                                 </field>
216                                 <field name="saveAs">
217                                     <Boolean xml:space="preserve">true</Boolean>
218                                 </field>
219                                 <field name="openInBrowser">
220                                     <Boolean xml:space="preserve">false</Boolean>
221                                 </field>
222                                 <field name="outputFile">
223                                     <null/>
224                                 </field>
225                                 <field name="openOtherLocationInBrowser">
226                                     <Boolean xml:space="preserve">false</Boolean>
227                                 </field>
228                                 <field name="locationToOpenInBrowserURL">
229                                     <String xml:space="preserve"></String>
230                                 </field>
231                                 <field name="openInEditor">
232                                     <Boolean xml:space="preserve">false</Boolean>
233                                 </field>
234                                 <field name="showInHTMLPane">
235                                     <Boolean xml:space="preserve">false</Boolean>
236                                 </field>
237                                 <field name="showInXMLPane">
238                                     <Boolean xml:space="preserve">true</Boolean>
239                                 </field>
240                                 <field name="showInSVGPane">
241                                     <Boolean xml:space="preserve">false</Boolean>
242                                 </field>
243                                 <field name="useXSLTInput">
244                                     <Boolean xml:space="preserve">true</Boolean>
245                                 </field>
246                                 <field name="xsltParams">
247                                     <list/>
248                                 </field>
249                                 <field name="cascadingStylesheets">
250                                     <String-array/>
251                                 </field>
252                                 <field name="xslTransformer">
253                                     <String xml:space="preserve">Saxon9B XQuery</String>
254                                 </field>
255                                 <field name="extensionURLs">
256                                     <String-array/>
257                                 </field>
258                             </scenario>
259                             <scenario>
260                                 <field name="name">
261                                     <String xml:space="preserve">phyloxml_test_document_2</String>
262                                 </field>
263                                 <field name="baseURL">
264                                     <String xml:space="preserve"></String>
265                                 </field>
266                                 <field name="footerURL">
267                                     <String xml:space="preserve"></String>
268                                 </field>
269                                 <field name="fOPMethod">
270                                     <String xml:space="preserve">pdf</String>
271                                 </field>
272                                 <field name="fOProcessorName">
273                                     <String xml:space="preserve">Built-in (Apache FOP)</String>
274                                 </field>
275                                 <field name="headerURL">
276                                     <String xml:space="preserve"></String>
277                                 </field>
278                                 <field name="inputXSLURL">
279                                     <null/>
280                                 </field>
281                                 <field name="inputXMLURL">
282                                     <String xml:space="preserve">${currentFileURL}</String>
283                                 </field>
284                                 <field name="defaultScenario">
285                                     <Boolean xml:space="preserve">true</Boolean>
286                                 </field>
287                                 <field name="isFOPPerforming">
288                                     <Boolean xml:space="preserve">false</Boolean>
289                                 </field>
290                                 <field name="type">
291                                     <String xml:space="preserve">XSL</String>
292                                 </field>
293                                 <field name="saveAs">
294                                     <Boolean xml:space="preserve">true</Boolean>
295                                 </field>
296                                 <field name="openInBrowser">
297                                     <Boolean xml:space="preserve">false</Boolean>
298                                 </field>
299                                 <field name="outputFile">
300                                     <null/>
301                                 </field>
302                                 <field name="openOtherLocationInBrowser">
303                                     <Boolean xml:space="preserve">false</Boolean>
304                                 </field>
305                                 <field name="locationToOpenInBrowserURL">
306                                     <String xml:space="preserve"></String>
307                                 </field>
308                                 <field name="openInEditor">
309                                     <Boolean xml:space="preserve">false</Boolean>
310                                 </field>
311                                 <field name="showInHTMLPane">
312                                     <Boolean xml:space="preserve">false</Boolean>
313                                 </field>
314                                 <field name="showInXMLPane">
315                                     <Boolean xml:space="preserve">true</Boolean>
316                                 </field>
317                                 <field name="showInSVGPane">
318                                     <Boolean xml:space="preserve">false</Boolean>
319                                 </field>
320                                 <field name="useXSLTInput">
321                                     <Boolean xml:space="preserve">true</Boolean>
322                                 </field>
323                                 <field name="xsltParams">
324                                     <list/>
325                                 </field>
326                                 <field name="cascadingStylesheets">
327                                     <String-array/>
328                                 </field>
329                                 <field name="xslTransformer">
330                                     <String xml:space="preserve">Saxon6.5.5</String>
331                                 </field>
332                                 <field name="extensionURLs">
333                                     <String-array/>
334                                 </field>
335                             </scenario>
336                         </scenario-array>
337                     </entry>
338                     <entry>
339                         <String xml:space="preserve">scenarios.load.from.project</String>
340                         <Boolean xml:space="preserve">true</Boolean>
341                     </entry>
342                 </map>
343             </serialized>
344         </options>
345     </meta>
346     <projectTree name="phyloxml_oxygen_project.xpr">
347         <file name="../../examples/apaf.xml"/>
348         <file name="../../examples/bcl_2.xml"/>
349         <file name="../../examples/branch_widths.xml"/>
350         <file name="../../examples/demo_colors_and_widths.xml"/>
351         <file name="../../test_data/gene_tree_1.xml"/>
352         <file name="../../test_data/gene_tree_2.xml"/>
353         <file name="../../resources/phyloxml_schema/1.10/phyloxml.xsd"/>
354         <file name="../../examples/phyloxml_examples.xml"/>
355         <file name="../../examples/phyloxml_examples_1.xml"/>
356         <file name="../../examples/phyloxml_seq_annotation.xml"/>
357         <file name="../../test_data/phyloxml_test_atv.xml"/>
358         <file name="../../test_data/phyloxml_test_t1.xml"/>
359         <file name="../../test_data/phyloxml_test_t2.xml"/>
360         <file name="../../test_data/phyloxml_test_t3.xml"/>
361         <file name="../../test_data/phyloxml_test_t4.xml"/>
362         <file name="phyloxml_to_html_xslt.xml"/>
363         <file name="../../examples/single_descendants.xml"/>
364         <file name="../../examples/singlet.xml"/>
365         <file name="../../test_data/special_characters.xml"/>
366         <file name="../../test_data/species_tree_1.xml"/>
367         <file name="../../test_data/species_tree_1_unresolved.xml"/>
368     </projectTree>
369 </project>