forester/ruby/evoruby/files/test/ncbi_tseq.xml

   1 <?xml version="1.0"?>
   2 <!DOCTYPE TSeqSet PUBLIC "-//NCBI//NCBI TSeq/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_TSeq.dtd">
   3 <TSeqSet>
   4 <TSeq>
   5   <TSeq_seqtype value="protein"/>
   6   <TSeq_gi>29341016</TSeq_gi>
   7   <TSeq_accver>AAO78806.1</TSeq_accver>
   8   <TSeq_sid>gnl|mbpwusl|BT3701</TSeq_sid>
   9   <TSeq_taxid>226186</TSeq_taxid>
  10   <TSeq_orgname>Bacteroides thetaiotaomicron VPI-5482</TSeq_orgname>
  11   <TSeq_defline>SusD [Bacteroides thetaiotaomicron VPI-5482]</TSeq_defline>
  12   <TSeq_length>551</TSeq_length>
  13   <TSeq_sequence>MKTKYIKQLFSAALIAVLSSGVTSCINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQENQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  14 </TSeq>
  15
  16 <TSeq>
  17   <TSeq_seqtype value="protein"/>
  18   <TSeq_gi>29349109</TSeq_gi>
  19   <TSeq_accver>NP_812612.1</TSeq_accver>
  20   <TSeq_sid>gnl|REF_mbpwusl|BT3701</TSeq_sid>
  21   <TSeq_taxid>226186</TSeq_taxid>
  22   <TSeq_orgname>Bacteroides thetaiotaomicron VPI-5482</TSeq_orgname>
  23   <TSeq_defline>SusD, outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]</TSeq_defline>
  24   <TSeq_length>551</TSeq_length>
  25   <TSeq_sequence>MKTKYIKQLFSAALIAVLSSGVTSCINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQENQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  26 </TSeq>
  27
  28 <TSeq>
  29   <TSeq_seqtype value="protein"/>
  30   <TSeq_gi>1478026</TSeq_gi>
  31   <TSeq_accver>AAB42172.1</TSeq_accver>
  32   <TSeq_taxid>818</TSeq_taxid>
  33   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  34   <TSeq_defline>outer membrane protein</TSeq_defline>
  35   <TSeq_length>554</TSeq_length>
  36   <TSeq_sequence>MKTKYIKQLFSAALIAVLSSGVTSCINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQENQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPASHATYPDTDIPLFPFGRSIPDTCGSHFPPGRRRHRRHQLNFAKRAQLYKKGTEPLTEQETNRDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  37 </TSeq>
  38
  39 <TSeq>
  40   <TSeq_seqtype value="protein"/>
  41   <TSeq_gi>188596440</TSeq_gi>
  42   <TSeq_sid>pdb|3CK9|B</TSeq_sid>
  43   <TSeq_taxid>818</TSeq_taxid>
  44   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  45   <TSeq_defline>Chain B, B. Thetaiotaomicron Susd With Maltoheptaose</TSeq_defline>
  46   <TSeq_length>527</TSeq_length>
  47   <TSeq_sequence>GINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  48 </TSeq>
  49
  50 <TSeq>
  51   <TSeq_seqtype value="protein"/>
  52   <TSeq_gi>188596439</TSeq_gi>
  53   <TSeq_sid>pdb|3CK9|A</TSeq_sid>
  54   <TSeq_taxid>818</TSeq_taxid>
  55   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  56   <TSeq_defline>Chain A, B. Thetaiotaomicron Susd With Maltoheptaose</TSeq_defline>
  57   <TSeq_length>527</TSeq_length>
  58   <TSeq_sequence>GINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  59 </TSeq>
  60
  61 <TSeq>
  62   <TSeq_seqtype value="protein"/>
  63   <TSeq_gi>171849127</TSeq_gi>
  64   <TSeq_sid>pdb|3CKC|B</TSeq_sid>
  65   <TSeq_taxid>818</TSeq_taxid>
  66   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  67   <TSeq_defline>Chain B, B. Thetaiotaomicron Susd</TSeq_defline>
  68   <TSeq_length>527</TSeq_length>
  69   <TSeq_sequence>GINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSXIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  70 </TSeq>
  71
  72 <TSeq>
  73   <TSeq_seqtype value="protein"/>
  74   <TSeq_gi>171849126</TSeq_gi>
  75   <TSeq_sid>pdb|3CKC|A</TSeq_sid>
  76   <TSeq_taxid>818</TSeq_taxid>
  77   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  78   <TSeq_defline>Chain A, B. Thetaiotaomicron Susd</TSeq_defline>
  79   <TSeq_length>527</TSeq_length>
  80   <TSeq_sequence>GINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSXIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  81 </TSeq>
  82
  83 <TSeq>
  84   <TSeq_seqtype value="protein"/>
  85   <TSeq_gi>171849125</TSeq_gi>
  86   <TSeq_sid>pdb|3CKB|B</TSeq_sid>
  87   <TSeq_taxid>818</TSeq_taxid>
  88   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  89   <TSeq_defline>Chain B, B. Thetaiotaomicron Susd With Maltotriose</TSeq_defline>
  90   <TSeq_length>527</TSeq_length>
  91   <TSeq_sequence>GINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
  92 </TSeq>
  93
  94 <TSeq>
  95   <TSeq_seqtype value="protein"/>
  96   <TSeq_sid>pdb|3CKB|A</TSeq_sid>
  97   <TSeq_taxid>818</TSeq_taxid>
  98   <TSeq_orgname>Bacteroides thetaiotaomicron</TSeq_orgname>
  99   <TSeq_defline>Chain A, B. Thetaiotaomicron Susd With Maltotriose</TSeq_defline>
 100   <TSeq_length>527</TSeq_length>
 101   <TSeq_sequence>GINDLDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSPDLDGQDEGESGFYRTTFNCNELPTDECLWAWQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEGMTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHFSNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAANWLLRARLYLNAGVYTGQTDYAKAEEYASKVIGSAYKLCTNYSELFMADNDENENAMQEIILPIRQDGVKTRNYGGSTYLVCGTRVAGMPRMGTTNGWSCIFARAAMVQKFFSNLEDVPMLPADVEIPTKGLDTDEQIDAFDAEHGIRTEDMIKAAGDDRALLYSGVGGGRRKIQTDAISGFTDGLSIVKWQNYRSDGKPVSHATYPDTDIPLFRLAEAYLTRAEAIFRQGGDATGDINELRKRANCTRKVQTVTEQELIDEWAREFYLEGRRRSDLVRFGMFTTNKYLWDWKGGAMNGTSVASYYNKYPIPVSDINNNRNMSQNEGYK</TSeq_sequence>
 102 </TSeq>
 103
 104 </TSeqSet>