forester/ruby/evoruby/lib/evo/io/web/uniprotkb.rb

   1
   2 require 'net/http'
   3 require 'uri'
   4
   5 require 'lib/evo/io/parser/uniprot_parser'
   6
   7 module Evoruby
   8
   9
  10   class UniprotKB
  11
  12     BASE_URL = "http://www.ebi.ac.uk/Tools/dbfetch/dbfetch?db=uniprotkb;"
  13
  14
  15     def UniprotKB::get_by_id( id, style = "raw", format = "uniprot" )
  16       url_str = BASE_URL + "id=#{id};format=#{format};style=#{style}"
  17       uri = URI.parse url_str
  18       response = Net::HTTP.get_response uri
  19       lines = []
  20       response.body.each_line do |line|
  21         lines << line
  22         puts line
  23       end
  24       lines
  25     end
  26
  27
  28     def UniprotKB::get_entry_by_id( id  )
  29       lines = get_by_id( id,  "raw", "uniprot" )
  30       p = UniprotParser.new
  31       return p.parse( lines )
  32     end
  33
  34   end
  35
  36 end