2 # = lib/evo/util/constants.rb - Constants class
4 # Copyright:: Copyright (C) 2017 Christian M. Zmasek
5 # License:: GNU Lesser General Public License (LGPL)
12 EVORUBY_VERSION = '1.1'
14 ID_NORMALIZED_FASTA_FILE_SUFFIX = "_ni.fasta"
15 ID_MAP_FILE_SUFFIX = ".nim"
16 DOMAIN_TABLE_SUFFIX = "_domain_table"
18 DOMAINS_TO_FORESTER_OUTFILE_SUFFIX = ".dff"
19 DOMAINS_TO_FORESTER_EVALUE_CUTOFF_SUFFIX = "_dtfE"
21 PFAM_V_FOR_EX = "300" # Pfam version for examples
23 FORESTER_HOME_ENV_VARIABLE = 'FORESTER_HOME'
24 JAVA_HOME_ENV_VARIABLE = 'JAVA_HOME'
30 FILE_SEPARATOR = File::SEPARATOR
32 DOMAIN_STRUCTURE_NHX_SEPARATOR = '>'