1 #!/usr/local/bin/ruby -w
4 if ( ARGV == nil || ARGV.length != 2 )
5 puts( "usage: preprocess.rb <input> <path to Pfam A HMMs>" )
13 system( "hmmscan --nobias --domtblout " + input + "_hmmscan_260_10 -E 10 " + pfam + " " + input + ".ni.fasta" )
15 system( "hsp " + input + "_hmmscan_260_10 " + input + "_hmmscan_260_10_domain_table" )
17 system( "d2f " + input + "_hmmscan_260_10_domain_table " + input + ".ni.fasta " + input + "_hmmscan_260_10.dff" )