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HEAD
JAL-2844 removed resetting line drawing to keep line on screen
[jalview.git]
/
forester
/
sh
/
x_msa_pro.sh
1
re="(.+)_mafft_1000_l\.fasta"
2
for i in *
3
do
4
if test -f "$i"
5
then
6
if [[ $i =~ $re ]]
7
then
8
name=${BASH_REMATCH[1]}
9
echo $name
10
ruby /home/zma/git/forester/forester/ruby/evoruby/exe/msa_pro.rb -i=f -o=p -d -c -rr=0.5 -rsl=20 $i ${name}_mafft_1000_l_05_20
11
rc=$?
12
if [[ $rc != 0 ]]
13
then
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exit $rc
15
fi
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fi
17
fi
18
done