forester/sh/x_phylo_pl.sh

   1 re="(.+)_mafft_1000_l_05_20"
   2 for i in *
   3 do
   4     if test -f "$i"
   5     then
   6         if [[ $i =~ $re ]]
   7         then
   8             name=${BASH_REMATCH[1]}
   9             echo $name
  10             perl /home/zma/git/forester/forester/perl/phylo_pl.pl -B1000Wq@1S9X $i ${name}_mafft_1000_g_05_20_tree
  11             rc=$?
  12             if [[ $rc != 0 ]]
  13             then
  14                 exit $rc
  15             fi
  16         fi
  17     fi
  18 done