1 hmmpfam - search one or more sequences against HMM database
3 Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
4 Freely distributed under the GNU General Public License (GPL)
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6 HMM file: /home/yye/db/pfam20.0/Pfam_ls
7 Sequence file: Human.fasta.1
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10 Query sequence: ENSP00000285681
12 Description: pep:known chromosome:NCBI36:21:16024215:16174248:1 gene:ENSG00000155313 transcript:ENST00000285681
14 Scores for sequence family classification (score includes all domains):
15 Model Description Score E-value N
16 -------- ----------- ----- ------- ---
17 UCH Ubiquitin carboxyl-terminal hydrolase 176.2 7.7e-50 1
18 UIM Ubiquitin interaction motif 38.8 1.7e-08 2
19 UBA UBA/TS-N domain 23.2 0.00084 1
22 Model Domain seq-f seq-t hmm-f hmm-t score E-value
23 -------- ------- ----- ----- ----- ----- ----- -------
24 UBA 1/1 16 57 .. 1 41 [] 23.2 0.00084
25 UIM 1/2 96 113 .. 1 18 [] 24.5 0.00035
26 UIM 2/2 123 140 .. 1 18 [] 14.3 7.7e-50
27 UCH 1/1 166 654 .. 1 318 [] 176.2 0.3
30 Query sequence: ENSP00000310334
32 Description: pep:known chromosome:NCBI36:21:16364713:16901413:1 gene:ENSG00000174496 transcript:ENST00000308787
34 Scores for sequence family classification (score includes all domains):
35 Model Description Score E-value N
36 -------- ----------- ----- ------- ---
37 [no hits above thresholds]
40 Model Domain seq-f seq-t hmm-f hmm-t score E-value
41 -------- ------- ----- ----- ----- ----- ----- -------
42 [no hits above thresholds]