1 # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord
2 # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target
3 #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
4 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 1 9 4e-06 0.012 15.5 0.0 4 51 1 47 1 47 0.97 Regulator of chromosome condensation (RCC1) repeat
5 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 2 9 0.25 7.5e+02 0.1 0.0 1 12 50 61 50 63 0.84 Regulator of chromosome condensation (RCC1) repeat
6 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 3 9 0.081 2.4e+02 1.7 0.0 29 50 79 99 76 100 0.81 Regulator of chromosome condensation (RCC1) repeat
7 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 4 9 2.4e-16 7.2e-13 48.2 0.2 1 51 103 150 103 150 0.95 Regulator of chromosome condensation (RCC1) repeat
8 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 5 9 6.7e-18 2e-14 53.2 0.7 2 51 154 205 153 205 0.88 Regulator of chromosome condensation (RCC1) repeat
9 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 6 9 3.1e-12 9.4e-09 35.0 0.0 1 51 208 253 208 253 0.94 Regulator of chromosome condensation (RCC1) repeat
10 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 7 9 3.7e-10 1.1e-06 28.4 0.3 1 51 256 305 256 305 0.97 Regulator of chromosome condensation (RCC1) repeat
11 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 8 9 3e-09 9e-06 25.5 0.0 2 39 309 348 308 352 0.85 Regulator of chromosome condensation (RCC1) repeat
12 RCC1 PF00415.11 51 jgi|Monbr1|55|gw1.3.11.1 - 850 3.6e-60 199.6 22.3 9 9 4 1.2e+04 -3.9 0.0 23 35 541 553 539 554 0.80 Regulator of chromosome condensation (RCC1) repeat
13 HECT PF00632.18 308 jgi|Monbr1|55|gw1.3.11.1 - 850 1.6e-56 191.4 0.0 1 1 8e-60 2.4e-56 190.8 0.0 22 301 562 830 533 833 0.84 HECT-domain (ubiquitin-transferase)
14 Cupin_2 PF07883.4 71 jgi|Monbr1|55|gw1.3.11.1 - 850 0.014 14.5 0.0 1 2 0.041 1.2e+02 1.9 0.0 21 37 42 59 33 65 0.80 Cupin domain
15 Cupin_2 PF07883.4 71 jgi|Monbr1|55|gw1.3.11.1 - 850 0.014 14.5 0.0 2 2 0.00017 0.5 9.6 0.0 26 57 255 287 248 297 0.87 Cupin domain
16 NHL PF01436.14 28 jgi|Monbr1|55|gw1.3.11.1 - 850 0.031 13.9 0.5 1 3 0.47 1.4e+03 -0.8 0.0 5 16 146 157 146 158 0.88 NHL repeat
17 NHL PF01436.14 28 jgi|Monbr1|55|gw1.3.11.1 - 850 0.031 13.9 0.5 2 3 0.018 54 3.7 0.0 2 16 198 212 197 212 0.89 NHL repeat
18 NHL PF01436.14 28 jgi|Monbr1|55|gw1.3.11.1 - 850 0.031 13.9 0.5 3 3 0.0054 16 5.3 0.1 5 17 301 313 301 313 0.97 NHL repeat
19 ABC_membrane PF00664.16 275 jgi|Monbr1|82|gw1.7.5.1 - 1291 1.9e-58 197.7 23.2 1 2 2.9e-30 1.4e-27 96.4 9.2 4 274 70 335 67 336 0.89 ABC transporter transmembrane region
20 ABC_membrane PF00664.16 275 jgi|Monbr1|82|gw1.7.5.1 - 1291 1.9e-58 197.7 23.2 2 2 1.7e-33 8.6e-31 107.0 1.5 1 273 731 1008 727 1010 0.93 ABC transporter transmembrane region
21 ABC_tran PF00005.20 118 jgi|Monbr1|82|gw1.7.5.1 - 1291 5.4e-38 129.6 0.0 1 2 2.7e-18 1.4e-15 57.4 0.0 1 117 465 575 465 576 0.96 ABC transporter
22 ABC_tran PF00005.20 118 jgi|Monbr1|82|gw1.7.5.1 - 1291 5.4e-38 129.6 0.0 2 2 4.4e-22 2.2e-19 69.6 0.0 1 118 1097 1221 1097 1221 0.95 ABC transporter
23 SMC_N PF02463.12 220 jgi|Monbr1|82|gw1.7.5.1 - 1291 4e-07 29.1 1.0 1 4 0.018 9 5.1 0.5 27 51 454 478 446 504 0.77 RecF/RecN/SMC N terminal domain
24 SMC_N PF02463.12 220 jgi|Monbr1|82|gw1.7.5.1 - 1291 4e-07 29.1 1.0 2 4 0.0062 3.1 6.6 0.0 120 210 514 618 493 625 0.76 RecF/RecN/SMC N terminal domain
25 SMC_N PF02463.12 220 jgi|Monbr1|82|gw1.7.5.1 - 1291 4e-07 29.1 1.0 3 4 0.5 2.5e+02 0.4 0.0 28 42 1087 1101 1072 1117 0.81 RecF/RecN/SMC N terminal domain
26 SMC_N PF02463.12 220 jgi|Monbr1|82|gw1.7.5.1 - 1291 4e-07 29.1 1.0 4 4 0.00028 0.14 11.0 0.0 135 209 1174 1262 1111 1268 0.78 RecF/RecN/SMC N terminal domain
27 Miro PF08477.6 119 jgi|Monbr1|82|gw1.7.5.1 - 1291 5.9e-05 23.2 0.2 1 2 7.2e-05 0.036 14.2 0.0 2 37 454 483 454 526 0.69 Miro-like protein
28 Miro PF08477.6 119 jgi|Monbr1|82|gw1.7.5.1 - 1291 5.9e-05 23.2 0.2 2 2 0.023 12 6.1 0.0 1 16 1085 1100 1085 1124 0.86 Miro-like protein
29 DUF258 PF03193.9 161 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.00029 19.7 0.1 1 2 0.0011 0.53 9.1 0.1 35 67 451 483 441 487 0.88 Protein of unknown function, DUF258
30 DUF258 PF03193.9 161 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.00029 19.7 0.1 2 2 0.0024 1.2 8.0 0.0 36 68 1084 1116 1068 1142 0.72 Protein of unknown function, DUF258
31 DUF87 PF01935.10 229 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.00096 18.7 0.0 1 2 0.03 15 5.0 0.0 10 47 436 475 430 482 0.81 Domain of unknown function DUF87
32 DUF87 PF01935.10 229 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.00096 18.7 0.0 2 2 0.0005 0.25 10.8 0.0 25 47 1085 1107 1075 1115 0.83 Domain of unknown function DUF87
33 ArgK PF03308.9 267 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0014 17.1 0.0 1 2 0.00086 0.42 9.0 0.0 17 54 439 476 422 490 0.81 ArgK protein
34 ArgK PF03308.9 267 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0014 17.1 0.0 2 2 0.0081 4 5.8 0.0 18 50 1072 1104 1064 1118 0.80 ArgK protein
35 Dynamin_N PF00350.16 168 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0029 17.1 0.0 1 2 2.2e-05 0.011 15.2 0.0 1 40 454 493 454 554 0.85 Dynamin family
36 Dynamin_N PF00350.16 168 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0029 17.1 0.0 2 2 6.6 3.3e+03 -2.6 0.0 1 15 1086 1100 1086 1105 0.84 Dynamin family
37 PRK PF00485.11 194 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0044 16.2 0.1 1 2 0.015 7.5 5.7 0.0 1 29 453 478 453 529 0.75 Phosphoribulokinase / Uridine kinase family
38 PRK PF00485.11 194 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0044 16.2 0.1 2 2 0.0025 1.2 8.2 0.0 2 24 1086 1108 1085 1132 0.86 Phosphoribulokinase / Uridine kinase family
39 FtsK_SpoIIIE PF01580.11 205 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0045 16.1 0.0 1 2 0.011 5.4 6.1 0.0 28 59 437 472 415 478 0.70 FtsK/SpoIIIE family
40 FtsK_SpoIIIE PF01580.11 205 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0045 16.1 0.0 2 2 0.0049 2.5 7.2 0.0 29 58 1074 1103 1060 1107 0.87 FtsK/SpoIIIE family
41 AAA PF00004.22 130 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0052 16.7 0.2 1 2 0.017 8.4 6.3 0.0 3 40 456 492 454 513 0.85 ATPase family associated with various cellular activities (AAA)
42 AAA PF00004.22 130 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0052 16.7 0.2 2 2 0.024 12 5.8 0.0 4 95 1089 1243 1086 1264 0.60 ATPase family associated with various cellular activities (AAA)
43 GSPII_E PF00437.13 282 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0055 15.3 0.0 1 2 0.0016 0.78 8.2 0.0 134 167 447 480 410 486 0.83 Type II/IV secretion system protein
44 GSPII_E PF00437.13 282 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.0055 15.3 0.0 2 2 0.035 17 3.8 0.0 141 161 1086 1106 1071 1116 0.79 Type II/IV secretion system protein
45 NB-ARC PF00931.15 285 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.019 13.5 1.2 1 3 0.041 20 3.5 0.0 20 58 452 494 445 522 0.73 NB-ARC domain
46 NB-ARC PF00931.15 285 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.019 13.5 1.2 2 3 0.0075 3.7 6.0 0.0 22 40 1086 1104 1074 1112 0.84 NB-ARC domain
47 NB-ARC PF00931.15 285 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.019 13.5 1.2 3 3 0.34 1.7e+02 0.5 0.1 74 106 1216 1248 1204 1265 0.82 NB-ARC domain
48 KAP_NTPase PF07693.7 325 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.02 13.5 0.0 1 2 0.0086 4.2 5.9 0.0 21 47 452 478 442 689 0.81 KAP family P-loop domain
49 KAP_NTPase PF07693.7 325 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.02 13.5 0.0 2 2 0.019 9.4 4.8 0.0 23 107 1086 1262 1081 1271 0.71 KAP family P-loop domain
50 Zeta_toxin PF06414.5 201 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.072 11.8 0.7 1 2 0.0047 2.3 6.9 0.1 19 44 454 480 447 484 0.82 Zeta toxin
51 Zeta_toxin PF06414.5 201 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.072 11.8 0.7 2 2 0.088 44 2.7 0.0 21 49 1088 1117 1085 1122 0.85 Zeta toxin
52 ATP-synt_ab PF00006.18 215 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.077 12.1 0.1 1 2 0.0076 3.8 6.6 0.0 8 43 444 479 440 659 0.85 ATP synthase alpha/beta family, nucleotide-binding domain
53 ATP-synt_ab PF00006.18 215 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.077 12.1 0.1 2 2 0.13 64 2.6 0.0 16 35 1084 1103 1078 1113 0.87 ATP synthase alpha/beta family, nucleotide-binding domain
54 Arch_ATPase PF01637.11 234 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.091 12.1 0.0 1 2 0.042 21 4.3 0.0 22 68 453 505 447 549 0.73 Archaeal ATPase
55 Arch_ATPase PF01637.11 234 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.091 12.1 0.0 2 2 0.033 16 4.7 0.0 25 44 1088 1107 1082 1134 0.85 Archaeal ATPase
56 PTS_EIIC PF02378.11 321 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.11 11.0 4.2 1 3 0.71 3.5e+02 -0.6 0.0 68 127 60 112 57 123 0.81 Phosphotransferase system, EIIC
57 PTS_EIIC PF02378.11 321 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.11 11.0 4.2 2 3 1.6 8e+02 -1.7 0.0 223 274 725 795 695 807 0.54 Phosphotransferase system, EIIC
58 PTS_EIIC PF02378.11 321 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.11 11.0 4.2 3 3 0.00026 0.13 10.7 0.2 136 184 834 885 828 901 0.87 Phosphotransferase system, EIIC
59 MobB PF03205.7 137 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.12 11.8 0.6 1 2 0.018 8.9 5.8 0.1 3 26 454 477 452 484 0.86 Molybdopterin guanine dinucleotide synthesis protein B
60 MobB PF03205.7 137 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.12 11.8 0.6 2 2 0.071 35 3.8 0.0 3 22 1086 1105 1085 1111 0.83 Molybdopterin guanine dinucleotide synthesis protein B
61 DUF265 PF03266.8 168 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.13 11.6 0.5 1 2 0.21 1e+02 2.1 0.0 2 26 454 478 453 487 0.85 Protein of unknown function, DUF265
62 DUF265 PF03266.8 168 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.13 11.6 0.5 2 2 0.0072 3.6 6.9 0.0 1 26 1085 1110 1085 1128 0.78 Protein of unknown function, DUF265
63 RNA_helicase PF00910.15 107 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.13 12.1 0.2 1 2 0.2 98 2.8 0.0 3 29 456 482 454 521 0.69 RNA helicase
64 RNA_helicase PF00910.15 107 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.13 12.1 0.2 2 2 0.012 6.1 6.7 0.0 3 23 1088 1108 1086 1121 0.81 RNA helicase
65 CoaE PF01121.13 180 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.23 10.5 1.3 1 2 0.0065 3.2 6.7 0.1 2 24 453 476 452 496 0.78 Dephospho-CoA kinase
66 CoaE PF01121.13 180 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.23 10.5 1.3 2 2 0.21 1e+02 1.8 0.0 3 20 1086 1103 1085 1124 0.84 Dephospho-CoA kinase
67 NhaB PF06450.5 515 jgi|Monbr1|82|gw1.7.5.1 - 1291 0.57 8.4 2.7 1 1 0.002 0.97 7.6 1.9 96 176 75 158 63 210 0.85 Bacterial Na+/H+ antiporter B (NhaB)
68 Pex24p PF06398.4 354 jgi|Monbr1|82|gw1.7.5.1 - 1291 1.8 6.9 6.2 1 2 0.0035 1.7 7.0 0.1 134 202 174 245 151 282 0.81 Integral peroxisomal membrane peroxin
69 Pex24p PF06398.4 354 jgi|Monbr1|82|gw1.7.5.1 - 1291 1.8 6.9 6.2 2 2 0.26 1.3e+02 0.8 1.7 44 156 861 976 856 994 0.66 Integral peroxisomal membrane peroxin
70 DNA_pol_B PF00136.14 467 jgi|Monbr1|107|gw1.5.19.1 - 1089 3.3e-120 401.7 0.3 1 1 1.2e-123 4.9e-120 401.1 0.2 1 464 475 932 475 935 0.90 DNA polymerase family B
71 DNA_pol_B_exo PF03104.12 317 jgi|Monbr1|107|gw1.5.19.1 - 1089 8.3e-40 136.3 0.0 1 1 3.1e-43 1.2e-39 135.7 0.0 3 316 51 395 49 396 0.92 DNA polymerase family B, exonuclease domain
72 DNA_pol_B_new PF03104.12 317 jgi|Monbr1|107|gw1.5.19.2 - 1089 8.3e-40 136.3 0.0 1 1 3.1e-43 1.2e-39 135.7 0.0 3 316 51 395 49 396 0.92 DNA polymerase family B, exonuclease domain
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