2 Version 4.0b10 for 32-bit Microsoft Windows
3 Fri Mar 21 18:53:11 2008
5 -----------------------------NOTICE-----------------------------
6 This is a beta-test version. Please report any crashes,
7 apparent calculation errors, or other anomalous results.
8 There are no restrictions on publication of results obtained
9 with this version, but you should check the WWW site
10 frequently for bug announcements and/or updated versions.
11 See the README file on the distribution media for details.
12 ----------------------------------------------------------------
16 Unrooted tree(s) rooted using outgroup method
17 Optimality criterion = parsimony
18 Character-status summary:
19 Of 4978 total characters:
20 All characters are of type 'unord'
21 All characters have equal weight
22 419 characters are constant
23 3179 variable characters are parsimony-uninformative
24 Number of parsimony-informative characters = 1380
25 Character-state optimization: Accelerated transformation (ACCTRAN)
27 Tree number 1 (rooted using default outgroup)
29 Data matrix and reconstructed states for internal nodes:
31 111111111122222222223333333333444444444455555555556666666
32 Taxon/Node 123456789012345678901234567890123456789012345678901234567890123456
33 ------------------------------------------------------------------------------
34 MOUSE 000001111101100010110110001010111111110001111001001110101110001111
35 NEMVE 000001111000000000010100001000000000100001011110110001110101110111
36 MONBE 000001100001000100010001011111100000000001011000000000000000000100
37 DICDI 111101100000011001010100001000000000001110011000000000000000000000
38 ARATH 000011100010000001011000101010100000001000011000000000000000000000
39 6 000001100000000001010000001010100000001000011000000000000000000000
40 7 000001100000000000010000001010100000000001011000000000000000000100
41 8 000001111000000000010100001010100000100001011000000000100100000111
43 Data matrix and reconstructed states for internal nodes (continued):
46 444444444444444444444444444444444444444444444444444444444444444444
47 888888888888888999999999999999999999999999999999999999999999999999
48 888889999999999000000000011111111112222222222333333333344444444445
49 Taxon/Node 567890123456789012345678901234567890123456789012345678901234567890
50 ------------------------------------------------------------------------------
51 MOUSE 111110110111001001011110100001111101011101011011100111101011111100
52 NEMVE 111100100110000001011110101110011100100001111000010001101011011100
53 MONBE 011110100100000111011110000000011000000000010100000000101110001000
54 DICDI 000101101100010001100010010000011100010011010000000000101010000000
55 ARATH 010101101100100011111111001110011110000000010000001000110010000011
56 6 010101101100000011111110000000011100000000010000000000101010000000
57 7 011100100100000011011110000000011100000000010000000000101010001000
58 8 111100100110000001011110100000011100000001011000000001101011011100
60 Data matrix and reconstructed states for internal nodes (continued):
62 4444444444444444444444444444
63 9999999999999999999999999999
64 5555555556666666666777777777
65 Taxon/Node 1234567890123456789012345678
66 ----------------------------------------
67 MOUSE 1100111010111111101011011110
68 NEMVE 0100001000101101101000010010
69 MONBE 1100001100001111000000001010
70 DICDI 0110011000101100110001100001
71 ARATH 0111111001001100110110001010
72 6 0110011000001100110000001010
73 7 0100001000001101100000001010
74 8 0100001000101101101000011010
77 Consistency index (CI) = 0.8920
78 Homoplasy index (HI) = 0.1080
79 CI excluding uninformative characters = 0.7143
80 HI excluding uninformative characters = 0.2857
81 Retention index (RI) = 0.6000
82 Rescaled consistency index (RC) = 0.5352
84 /------------------------------------------------------------ MOUSE
86 +--------------- NEMVE
88 | /---------------------------- MONBE
90 \------------------------------7 /---------------------- DICDI
92 \------------------------------ ARATH
94 /----------------------------------------------------------------------- MOUSE
96 +----------------------------------------------------------------------- NEMVE
98 | /----------------------------------------------- MONBE
100 \-----------------------7 /------------------------ DICDI
101 \----------------------6
102 \------------------------ ARATH
104 Character change lists:
106 Character CI Steps Changes
107 ------------------------------------------------------------------------------
108 1 (14-3-3=BRCT) 1.000 1 node_6 0 ==> 1 DICDI
109 2 (14-3-3=PARP) 1.000 1 node_6 0 ==> 1 DICDI
110 3 (14-3-3=VIT) 1.000 1 node_6 0 ==> 1 DICDI
111 4 (14-3-3=VWA) 1.000 1 node_6 0 ==> 1 DICDI
112 5 (2-Hacid_dh_C=ACT) 1.000 1 node_6 0 ==> 1 ARATH
113 8 (2OG-FeII_Oxy=Methyltransf_11) 1.000 1 node_8 1 ==> 0 node_7
114 9 (2OG-FeII_Oxy=P4Ha_N) 1.000 1 node_8 1 ==> 0 node_7
115 10 (2OG-FeII_Oxy=RRM_1) 1.000 1 node_8 0 ==> 1 MOUSE
116 11 (2OG-FeII_Oxy=ShK) 1.000 1 node_6 0 ==> 1 ARATH
117 12 (2OG-FeII_Oxy=TPR_2) 0.500 1 node_8 0 --> 1 MOUSE
118 1 node_7 0 --> 1 MONBE