1 <?xml version="1.0" encoding="UTF-8"?>
2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
3 xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"
4 xmlns="http://www.phyloxml.org" xmlns:d="http://www.different.org" xmlns:o="http://www.other.org">
5 <o:something>foo <value>bar</value>
7 <phylogeny rooted="true">
8 <date>2008-12-12T12:12:12</date>
11 <clade id_source="ab">
12 <branch_length>0.2</branch_length>
13 <confidence type="ml">0.99</confidence>
14 <confidence type="prob">0.89</confidence>
16 <sequence id_source="s1">
18 <mol_seq>acgtddd</mol_seq>
23 <o:something>foo <value>bar</value>
28 <branch_length>0.1</branch_length>
33 <sequence id_source="s2">
34 <accession source="foo">qw-_|</accession>
39 <sequence_relation id_ref_0="s1" id_ref_1="s2" type="orthology">
40 <confidence type="ml">0.99</confidence>
42 <sequence_relation id_ref_0="s2" id_ref_1="s1" type="orthology"/>
43 <property datatype="xsd:string" applies_to="clade" id_ref="ab" ref="MORPH:size"> big </property>
48 <o:something type="ru">foobar</o:something>
50 <o:clade length="0.1">
51 <o:tip>tip name</o:tip>