forester/test_data/pplacer_2.tre

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.20/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="true">
   4   <clade>
   5     <branch_length>0.0</branch_length>
   6     <clade>
   7       <branch_length>0.0679195</branch_length>
   8       <clade>
   9         <branch_length>0.21174</branch_length>
  10         <clade>
  11           <branch_length>0.477305</branch_length>
  12           <clade>
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  14             <clade>
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  16               <clade>
  17                 <branch_length>0.0857918</branch_length>
  18                 <clade>
  19                   <branch_length>0.162176</branch_length>
  20                   <clade>
  21                     <branch_length>9.756E-6</branch_length>
  22                     <clade>
  23                       <branch_length>0.0802987</branch_length>
  24                       <clade>
  25                         <branch_length>0.0684959</branch_length>
  26                         <clade>
  27                           <branch_length>0.0761231</branch_length>
  28                           <clade>
  29                             <branch_length>0.107021</branch_length>
  30                             <clade>
  31                               <branch_length>1.14092</branch_length>
  32                               <clade>
  33                                 <name>A.1.1.1</name>
  34                                 <branch_length>1.0E-6</branch_length>
  35                               </clade>
  36                               <clade>
  37                                 <name>A.1.1.2</name>
  38                                 <branch_length>0.043972</branch_length>
  39                               </clade>
  40                             </clade>
  41                             <clade>
  42                               <name>CED9_CAEBR_#5_M=0.0277996</name>
  43                               <branch_length>1.49689</branch_length>
  44                             </clade>
  45                           </clade>
  46                           <clade>
  47                             <name>A.1.1.3</name>
  48                             <branch_length>1.11622</branch_length>
  49                           </clade>
  50                         </clade>
  51                         <clade>
  52                           <name>CED9_CAEBR_#6_M=0.0273544</name>
  53                           <branch_length>1.58319</branch_length>
  54                         </clade>
  55                       </clade>
  56                       <clade>
  57                         <branch_length>0.760242</branch_length>
  58                         <clade>
  59                           <name>A.1.2.1</name>
  60                           <branch_length>0.130667</branch_length>
  61                         </clade>
  62                         <clade>
  63                           <name>A.1.2.2</name>
  64                           <branch_length>0.127953</branch_length>
  65                         </clade>
  66                       </clade>
  67                     </clade>
  68                     <clade>
  69                       <name>CED9_CAEBR_#4_M=0.0552666</name>
  70                       <branch_length>1.60222</branch_length>
  71                     </clade>
  72                   </clade>
  73                   <clade>
  74                     <branch_length>7.591E-6</branch_length>
  75                     <clade>
  76                       <name>A.2.1.1</name>
  77                       <branch_length>1.00994</branch_length>
  78                     </clade>
  79                     <clade>
  80                       <name>CED9_CAEBR_#3_M=0.0552703</name>
  81                       <branch_length>1.60221</branch_length>
  82                     </clade>
  83                   </clade>
  84                 </clade>
  85                 <clade>
  86                   <name>CED9_CAEBR_#0_M=0.380211</name>
  87                   <branch_length>1.54796</branch_length>
  88                 </clade>
  89               </clade>
  90               <clade>
  91                 <branch_length>1.257E-5</branch_length>
  92                 <clade>
  93                   <branch_length>1.11517</branch_length>
  94                   <clade>
  95                     <branch_length>0.0852309</branch_length>
  96                     <clade>
  97                       <name>A.3.1.1</name>
  98                       <branch_length>0.022644</branch_length>
  99                     </clade>
 100                     <clade>
 101                       <name>A.3.1.1</name>
 102                       <branch_length>0.017626</branch_length>
 103                     </clade>
 104                   </clade>
 105                   <clade>
 106                     <name>A.3.2.1</name>
 107                     <branch_length>0.156409</branch_length>
 108                   </clade>
 109                 </clade>
 110                 <clade>
 111                   <name>CED9_CAEBR_#2_M=0.224819</name>
 112                   <branch_length>1.56994</branch_length>
 113                 </clade>
 114               </clade>
 115             </clade>
 116             <clade>
 117               <name>CED9_CAEBR_#1_M=0.229279</name>
 118               <branch_length>1.56987</branch_length>
 119             </clade>
 120           </clade>
 121           <clade>
 122             <name>C.5</name>
 123             <branch_length>0.367867</branch_length>
 124             <taxonomy>
 125             </taxonomy>
 126           </clade>
 127         </clade>
 128         <clade>
 129           <name>A.6</name>
 130           <branch_length>0.030507</branch_length>
 131         </clade>
 132       </clade>
 133       <clade>
 134         <name>A.7</name>
 135         <branch_length>0.026535</branch_length>
 136       </clade>
 137     </clade>
 138     <clade>
 139       <name>A.8</name>
 140       <branch_length>0.035019</branch_length>
 141     </clade>
 142     <clade>
 143       <name>B.9</name>
 144       <branch_length>1.0E-6</branch_length>
 145     </clade>
 146   </clade>
 147 </phylogeny>
 148 </phyloxml>