compactor work
[jalview.git] / forester / test_data / rio_species.xml
1 <?xml version="1.0" encoding="UTF-8"?>\r
2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">\r
3 <phylogeny rooted="true" rerootable="false">\r
4   <clade>\r
5     <name>cellular_organisms</name>\r
6     <clade>\r
7       <taxonomy>\r
8         <scientific_name>Neomura</scientific_name>\r
9       </taxonomy>\r
10       <clade>\r
11         <taxonomy>\r
12           <id provider="uniprot">2759</id>\r
13           <scientific_name>Eukaryota</scientific_name>\r
14           <rank>superkingdom</rank>\r
15         </taxonomy>\r
16         <clade>\r
17           <name>Unikonta</name>\r
18           <clade>\r
19             <name>Opisthokonta &amp; Apusozoa</name>\r
20             <clade>\r
21               <taxonomy>\r
22                 <id provider="uniprot">33154</id>\r
23                 <scientific_name>Opisthokonta</scientific_name>\r
24                 <common_name>Fungi/Metazoa group</common_name>\r
25               </taxonomy>\r
26               <clade>\r
27                 <taxonomy>\r
28                   <scientific_name>Holozoa</scientific_name>\r
29                 </taxonomy>\r
30                 <clade>\r
31                   <name>Choanoflagellatea &amp; Metazoa</name>\r
32                   <clade>\r
33                     <name>Metazoa</name>\r
34                     <taxonomy>\r
35                       <id provider="uniprot">33208</id>\r
36                       <scientific_name>Metazoa</scientific_name>\r
37                       <rank>kingdom</rank>\r
38                     </taxonomy>\r
39                     <clade>\r
40                       <name>Eumetazoa</name>\r
41                       <reference doi="10.1038/nature06614">\r
42                       </reference>\r
43                       <clade>\r
44                         <name>Bilateria_Cnidaria</name>\r
45                         <clade>\r
46                           <name>Bilateria</name>\r
47                           <clade>\r
48                             <name>Deuterostomia</name>\r
49                             <reference doi="10.1038/nature04336">\r
50                             </reference>\r
51                             <clade>\r
52                               <name>Chordata</name>\r
53                               <taxonomy>\r
54                                 <id provider="uniprot">7711</id>\r
55                                 <scientific_name>Chordata</scientific_name>\r
56                                 <rank>phylum</rank>\r
57                               </taxonomy>\r
58                               <clade>\r
59                                 <name>Urochordata &amp; Vertebrata</name>\r
60                                 <clade>\r
61                                   <taxonomy>\r
62                                     <id provider="uniprot">7742</id>\r
63                                     <scientific_name>Vertebrata</scientific_name>\r
64                                   </taxonomy>\r
65                                   <clade>\r
66                                     <taxonomy>\r
67                                       <id provider="uniprot">7776</id>\r
68                                       <scientific_name>Gnathostomata</scientific_name>\r
69                                       <common_name>jawed vertebrates</common_name>\r
70                                       <rank>superclass</rank>\r
71                                     </taxonomy>\r
72                                     <clade>\r
73                                       <taxonomy>\r
74                                         <id provider="uniprot">117571</id>\r
75                                         <scientific_name>Euteleostomi</scientific_name>\r
76                                       </taxonomy>\r
77                                       <clade>\r
78                                         <name>Tetrapoda</name>\r
79                                         <clade>\r
80                                           <name>Amniota</name>\r
81                                           <clade>\r
82                                             <taxonomy>\r
83                                               <id provider="uniprot">40674</id>\r
84                                               <scientific_name>Mammalia</scientific_name>\r
85                                               <rank>class</rank>\r
86                                             </taxonomy>\r
87                                             <clade>\r
88                                               <name>Theria</name>\r
89                                               <clade>\r
90                                                 <taxonomy>\r
91                                                   <id provider="uniprot">9347</id>\r
92                                                   <scientific_name>Eutheria</scientific_name>\r
93                                                   <common_name>Placental mammals</common_name>\r
94                                                 </taxonomy>\r
95                                                 <reference doi="10.1002/bies.200900053">\r
96                                                   <desc>The new framework for understanding placental mammal evolution</desc>\r
97                                                 </reference>\r
98                                                 <clade>\r
99                                                   <taxonomy>\r
100                                                     <scientific_name>Boreoeutheria</scientific_name>\r
101                                                     <synonym>Boreotheria</synonym>\r
102                                                   </taxonomy>\r
103                                                   <clade>\r
104                                                     <taxonomy>\r
105                                                       <id provider="uniprot">314146</id>\r
106                                                       <scientific_name>Euarchontoglires</scientific_name>\r
107                                                       <rank>superorder</rank>\r
108                                                     </taxonomy>\r
109                                                     <clade>\r
110                                                       <taxonomy>\r
111                                                         <scientific_name>Euarchonta</scientific_name>\r
112                                                       </taxonomy>\r
113                                                       <clade>\r
114                                                         <taxonomy>\r
115                                                           <id provider="uniprot">9443</id>\r
116                                                           <scientific_name>Primates</scientific_name>\r
117                                                           <rank>order</rank>\r
118                                                         </taxonomy>\r
119                                                         <clade>\r
120                                                           <taxonomy>\r
121                                                             <id provider="uniprot">376913</id>\r
122                                                             <scientific_name>Haplorrhini</scientific_name>\r
123                                                             <rank>suborder</rank>\r
124                                                           </taxonomy>\r
125                                                           <clade>\r
126                                                             <taxonomy>\r
127                                                               <id provider="uniprot">314293</id>\r
128                                                               <scientific_name>Simiiformes</scientific_name>\r
129                                                               <rank>infraorder</rank>\r
130                                                             </taxonomy>\r
131                                                             <clade>\r
132                                                               <taxonomy>\r
133                                                                 <id provider="uniprot">9526</id>\r
134                                                                 <scientific_name>Catarrhini</scientific_name>\r
135                                                               </taxonomy>\r
136                                                               <clade>\r
137                                                                 <taxonomy>\r
138                                                                   <id provider="uniprot">314295</id>\r
139                                                                   <scientific_name>Hominoidea</scientific_name>\r
140                                                                   <common_name>Apes</common_name>\r
141                                                                   <rank>superfamily</rank>\r
142                                                                 </taxonomy>\r
143                                                                 <clade>\r
144                                                                   <taxonomy>\r
145                                                                     <id provider="uniprot">9604</id>\r
146                                                                     <scientific_name>Hominidae</scientific_name>\r
147                                                                     <common_name>Great apes</common_name>\r
148                                                                     <rank>family</rank>\r
149                                                                   </taxonomy>\r
150                                                                   <clade>\r
151                                                                     <taxonomy>\r
152                                                                       <id provider="uniprot">207598</id>\r
153                                                                       <scientific_name>Homininae</scientific_name>\r
154                                                                       <rank>subfamily</rank>\r
155                                                                     </taxonomy>\r
156                                                                     <clade>\r
157                                                                       <taxonomy>\r
158                                                                         <scientific_name>Hominini</scientific_name>\r
159                                                                         <rank>tribe</rank>\r
160                                                                       </taxonomy>\r
161                                                                       <clade>\r
162                                                                         <taxonomy>\r
163                                                                           <id provider="uniprot">9606</id>\r
164                                                                           <code>HUMAN</code>\r
165                                                                           <scientific_name>Homo sapiens</scientific_name>\r
166                                                                           <common_name>Human</common_name>\r
167                                                                           <rank>species</rank>\r
168                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>\r
169                                                                         </taxonomy>\r
170                                                                       </clade>\r
171                                                                       <clade>\r
172                                                                         <taxonomy>\r
173                                                                           <id provider="uniprot">9598</id>\r
174                                                                           <code>PANTR</code>\r
175                                                                           <scientific_name>Pan troglodytes</scientific_name>\r
176                                                                           <common_name>Chimpanzee</common_name>\r
177                                                                           <rank>species</rank>\r
178                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>\r
179                                                                         </taxonomy>\r
180                                                                       </clade>\r
181                                                                     </clade>\r
182                                                                     <clade>\r
183                                                                       <taxonomy>\r
184                                                                         <id provider="uniprot">9595</id>\r
185                                                                         <code>GORGO</code>\r
186                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>\r
187                                                                         <common_name>Western lowland gorilla</common_name>\r
188                                                                         <rank>subspecies</rank>\r
189                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>\r
190                                                                       </taxonomy>\r
191                                                                     </clade>\r
192                                                                   </clade>\r
193                                                                   <clade>\r
194                                                                     <taxonomy>\r
195                                                                       <id provider="uniprot">9601</id>\r
196                                                                       <code>PONAB</code>\r
197                                                                       <scientific_name>Pongo abelii</scientific_name>\r
198                                                                       <common_name>Sumatran orangutan</common_name>\r
199                                                                       <synonym>Pongo pygmaeus abelii</synonym>\r
200                                                                       <rank>species</rank>\r
201                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>\r
202                                                                     </taxonomy>\r
203                                                                   </clade>\r
204                                                                 </clade>\r
205                                                                 <clade>\r
206                                                                   <taxonomy>\r
207                                                                     <id provider="uniprot">61853</id>\r
208                                                                     <code>NOMLE</code>\r
209                                                                     <scientific_name>Nomascus leucogenys</scientific_name>\r
210                                                                     <common_name>Northern white-cheeked gibbon</common_name>\r
211                                                                     <synonym>Hylobates leucogenys</synonym>\r
212                                                                     <synonym>Hylobates concolor leucogenys</synonym>\r
213                                                                     <rank>species</rank>\r
214                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>\r
215                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>\r
216                                                                   </taxonomy>\r
217                                                                 </clade>\r
218                                                               </clade>\r
219                                                               <clade>\r
220                                                                 <taxonomy>\r
221                                                                   <id provider="uniprot">9528</id>\r
222                                                                   <scientific_name>Cercopithecinae</scientific_name>\r
223                                                                   <rank>subfamily</rank>\r
224                                                                 </taxonomy>\r
225                                                                 <clade>\r
226                                                                   <taxonomy>\r
227                                                                     <id provider="uniprot">9544</id>\r
228                                                                     <code>MACMU</code>\r
229                                                                     <scientific_name>Macaca mulatta</scientific_name>\r
230                                                                     <common_name>Rhesus macaque</common_name>\r
231                                                                     <rank>species</rank>\r
232                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>\r
233                                                                   </taxonomy>\r
234                                                                 </clade>\r
235                                                                 <clade>\r
236                                                                   <taxonomy>\r
237                                                                     <id provider="uniprot">9557</id>\r
238                                                                     <code>PAPHA</code>\r
239                                                                     <scientific_name>Papio hamadryas</scientific_name>\r
240                                                                     <common_name>Hamadryas baboon</common_name>\r
241                                                                     <rank>species</rank>\r
242                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>\r
243                                                                   </taxonomy>\r
244                                                                 </clade>\r
245                                                               </clade>\r
246                                                             </clade>\r
247                                                             <clade>\r
248                                                               <taxonomy>\r
249                                                                 <id provider="uniprot">9483</id>\r
250                                                                 <code>CALJA</code>\r
251                                                                 <scientific_name>Callithrix jacchus</scientific_name>\r
252                                                                 <common_name>White-tufted-ear marmoset</common_name>\r
253                                                                 <synonym>Callithrix jacchus jacchus</synonym>\r
254                                                                 <rank>species</rank>\r
255                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>\r
256                                                               </taxonomy>\r
257                                                             </clade>\r
258                                                           </clade>\r
259                                                           <clade>\r
260                                                             <taxonomy>\r
261                                                               <id provider="uniprot">9478</id>\r
262                                                               <code>TARSY</code>\r
263                                                               <scientific_name>Tarsius syrichta</scientific_name>\r
264                                                               <common_name>Philippine tarsier</common_name>\r
265                                                               <rank>species</rank>\r
266                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>\r
267                                                             </taxonomy>\r
268                                                           </clade>\r
269                                                         </clade>\r
270                                                         <clade>\r
271                                                           <taxonomy>\r
272                                                             <id provider="uniprot">376911</id>\r
273                                                             <scientific_name>Strepsirrhini</scientific_name>\r
274                                                             <rank>suborder</rank>\r
275                                                           </taxonomy>\r
276                                                           <clade>\r
277                                                             <taxonomy>\r
278                                                               <id provider="uniprot">30608</id>\r
279                                                               <code>MICMU</code>\r
280                                                               <scientific_name>Microcebus murinus</scientific_name>\r
281                                                               <common_name>Lesser mouse lemur</common_name>\r
282                                                               <rank>species</rank>\r
283                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>\r
284                                                             </taxonomy>\r
285                                                           </clade>\r
286                                                           <clade>\r
287                                                             <taxonomy>\r
288                                                               <id provider="uniprot">30611</id>\r
289                                                               <code>OTOGA</code>\r
290                                                               <scientific_name>Otolemur garnettii</scientific_name>\r
291                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>\r
292                                                               <synonym>Galago garnetti</synonym>\r
293                                                               <synonym>Small-eared galago</synonym>\r
294                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>\r
295                                                               <rank>species</rank>\r
296                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>\r
297                                                             </taxonomy>\r
298                                                           </clade>\r
299                                                         </clade>\r
300                                                       </clade>\r
301                                                       <clade>\r
302                                                         <taxonomy>\r
303                                                           <id provider="uniprot">37347</id>\r
304                                                           <code>TUPBE</code>\r
305                                                           <scientific_name>Tupaia belangeri</scientific_name>\r
306                                                           <common_name>Common tree shrew</common_name>\r
307                                                           <synonym>Tupaia glis belangeri</synonym>\r
308                                                           <rank>species</rank>\r
309                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>\r
310                                                         </taxonomy>\r
311                                                       </clade>\r
312                                                     </clade>\r
313                                                     <clade>\r
314                                                       <taxonomy>\r
315                                                         <id provider="uniprot">314147</id>\r
316                                                         <scientific_name>Glires</scientific_name>\r
317                                                         <common_name>Rodents and rabbits</common_name>\r
318                                                       </taxonomy>\r
319                                                       <clade>\r
320                                                         <taxonomy>\r
321                                                           <id provider="uniprot">9989</id>\r
322                                                           <scientific_name>Rodentia</scientific_name>\r
323                                                           <rank>order</rank>\r
324                                                         </taxonomy>\r
325                                                         <clade>\r
326                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>\r
327                                                           <reference doi="10.1186/1471-2148-9-71">\r
328                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>\r
329                                                           </reference>\r
330                                                           <clade>\r
331                                                             <taxonomy>\r
332                                                               <common_name>Mouse-related clade</common_name>\r
333                                                             </taxonomy>\r
334                                                             <clade>\r
335                                                               <taxonomy>\r
336                                                                 <id provider="uniprot">337687</id>\r
337                                                                 <scientific_name>Muroidea</scientific_name>\r
338                                                               </taxonomy>\r
339                                                               <clade>\r
340                                                                 <taxonomy>\r
341                                                                   <id provider="uniprot">39107</id>\r
342                                                                   <scientific_name>Murinae</scientific_name>\r
343                                                                   <rank>subfamily</rank>\r
344                                                                 </taxonomy>\r
345                                                                 <clade>\r
346                                                                   <taxonomy>\r
347                                                                     <id provider="uniprot">10090</id>\r
348                                                                     <code>MOUSE</code>\r
349                                                                     <scientific_name>Mus musculus</scientific_name>\r
350                                                                     <common_name>Mouse</common_name>\r
351                                                                     <rank>species</rank>\r
352                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>\r
353                                                                   </taxonomy>\r
354                                                                 </clade>\r
355                                                                 <clade>\r
356                                                                   <taxonomy>\r
357                                                                     <id provider="uniprot">10116</id>\r
358                                                                     <code>RAT</code>\r
359                                                                     <scientific_name>Rattus norvegicus</scientific_name>\r
360                                                                     <common_name>Rat</common_name>\r
361                                                                     <rank>species</rank>\r
362                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>\r
363                                                                   </taxonomy>\r
364                                                                 </clade>\r
365                                                               </clade>\r
366                                                               <clade>\r
367                                                                 <taxonomy>\r
368                                                                   <id provider="uniprot">10036</id>\r
369                                                                   <code>MESAU</code>\r
370                                                                   <scientific_name>Mesocricetus auratus</scientific_name>\r
371                                                                   <common_name>Golden hamster</common_name>\r
372                                                                   <rank>species</rank>\r
373                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>\r
374                                                                 </taxonomy>\r
375                                                               </clade>\r
376                                                             </clade>\r
377                                                             <clade>\r
378                                                               <taxonomy>\r
379                                                                 <id provider="uniprot">10020</id>\r
380                                                                 <code>DIPOR</code>\r
381                                                                 <scientific_name>Dipodomys ordii</scientific_name>\r
382                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>\r
383                                                                 <rank>species</rank>\r
384                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>\r
385                                                               </taxonomy>\r
386                                                             </clade>\r
387                                                           </clade>\r
388                                                           <clade>\r
389                                                             <taxonomy>\r
390                                                               <id provider="uniprot">10141</id>\r
391                                                               <code>CAVPO</code>\r
392                                                               <scientific_name>Cavia porcellus</scientific_name>\r
393                                                               <common_name>Guinea pig</common_name>\r
394                                                               <rank>species</rank>\r
395                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>\r
396                                                             </taxonomy>\r
397                                                           </clade>\r
398                                                         </clade>\r
399                                                         <clade>\r
400                                                           <taxonomy>\r
401                                                             <id provider="uniprot">43179</id>\r
402                                                             <code>SPETR</code>\r
403                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>\r
404                                                             <common_name>Thirteen-lined ground squirrel</common_name>\r
405                                                             <synonym>Ictidomys tridecemlineatus</synonym>\r
406                                                             <rank>species</rank>\r
407                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>\r
408                                                           </taxonomy>\r
409                                                         </clade>\r
410                                                       </clade>\r
411                                                       <clade>\r
412                                                         <taxonomy>\r
413                                                           <id provider="uniprot">9975</id>\r
414                                                           <scientific_name>Lagomorpha</scientific_name>\r
415                                                           <common_name>Rabbits, hares, pikas</common_name>\r
416                                                           <rank>order</rank>\r
417                                                         </taxonomy>\r
418                                                         <clade>\r
419                                                           <taxonomy>\r
420                                                             <id provider="uniprot">9978</id>\r
421                                                             <code>OCHPR</code>\r
422                                                             <scientific_name>Ochotona princeps</scientific_name>\r
423                                                             <common_name>Southern American pika</common_name>\r
424                                                             <rank>species</rank>\r
425                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>\r
426                                                           </taxonomy>\r
427                                                         </clade>\r
428                                                         <clade>\r
429                                                           <taxonomy>\r
430                                                             <id provider="uniprot">9986</id>\r
431                                                             <code>RABIT</code>\r
432                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>\r
433                                                             <common_name>Rabbit</common_name>\r
434                                                             <rank>species</rank>\r
435                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>\r
436                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>\r
437                                                           </taxonomy>\r
438                                                         </clade>\r
439                                                       </clade>\r
440                                                     </clade>\r
441                                                   </clade>\r
442                                                   <clade>\r
443                                                     <taxonomy>\r
444                                                       <id provider="uniprot">314145</id>\r
445                                                       <scientific_name>Laurasiatheria</scientific_name>\r
446                                                       <rank>superorder</rank>\r
447                                                     </taxonomy>\r
448                                                     <clade>\r
449                                                       <taxonomy>\r
450                                                         <scientific_name>Scrotifera</scientific_name>\r
451                                                       </taxonomy>\r
452                                                       <clade>\r
453                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>\r
454                                                         <clade>\r
455                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>\r
456                                                           <clade>\r
457                                                             <taxonomy>\r
458                                                               <id provider="uniprot">91561</id>\r
459                                                               <scientific_name>Cetartiodactyla</scientific_name>\r
460                                                               <common_name>Even-toed ungulates</common_name>\r
461                                                             </taxonomy>\r
462                                                             <clade>\r
463                                                               <name>Cetruminantia &amp; Suina</name>\r
464                                                               <clade>\r
465                                                                 <taxonomy>\r
466                                                                   <scientific_name>Cetruminantia</scientific_name>\r
467                                                                 </taxonomy>\r
468                                                                 <clade>\r
469                                                                   <taxonomy>\r
470                                                                     <id provider="uniprot">9895</id>\r
471                                                                     <scientific_name>Bovidae</scientific_name>\r
472                                                                     <rank>family</rank>\r
473                                                                   </taxonomy>\r
474                                                                   <clade>\r
475                                                                     <taxonomy>\r
476                                                                       <id provider="uniprot">9913</id>\r
477                                                                       <code>BOVIN</code>\r
478                                                                       <scientific_name>Bos taurus</scientific_name>\r
479                                                                       <common_name>Bovine</common_name>\r
480                                                                       <synonym>Bos bovis</synonym>\r
481                                                                       <rank>species</rank>\r
482                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>\r
483                                                                     </taxonomy>\r
484                                                                   </clade>\r
485                                                                   <clade>\r
486                                                                     <taxonomy>\r
487                                                                       <id provider="uniprot">9940</id>\r
488                                                                       <code>SHEEP</code>\r
489                                                                       <scientific_name>Ovis aries</scientific_name>\r
490                                                                       <common_name>Sheep</common_name>\r
491                                                                       <rank>species</rank>\r
492                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>\r
493                                                                     </taxonomy>\r
494                                                                   </clade>\r
495                                                                 </clade>\r
496                                                                 <clade>\r
497                                                                   <taxonomy>\r
498                                                                     <id provider="uniprot">9721</id>\r
499                                                                     <scientific_name>Cetacea</scientific_name>\r
500                                                                     <common_name>Whales</common_name>\r
501                                                                     <rank>order</rank>\r
502                                                                   </taxonomy>\r
503                                                                   <clade>\r
504                                                                     <taxonomy>\r
505                                                                       <id provider="uniprot">9771</id>\r
506                                                                       <code>BALMU</code>\r
507                                                                       <scientific_name>Balaenoptera musculus</scientific_name>\r
508                                                                       <common_name>Blue whale</common_name>\r
509                                                                       <rank>species</rank>\r
510                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>\r
511                                                                     </taxonomy>\r
512                                                                   </clade>\r
513                                                                   <clade>\r
514                                                                     <taxonomy>\r
515                                                                       <id provider="uniprot">9739</id>\r
516                                                                       <code>TURTR</code>\r
517                                                                       <scientific_name>Tursiops truncatus</scientific_name>\r
518                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>\r
519                                                                       <synonym>Delphinus truncatus</synonym>\r
520                                                                       <rank>species</rank>\r
521                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>\r
522                                                                     </taxonomy>\r
523                                                                   </clade>\r
524                                                                 </clade>\r
525                                                               </clade>\r
526                                                               <clade>\r
527                                                                 <taxonomy>\r
528                                                                   <id provider="uniprot">9823</id>\r
529                                                                   <code>PIG</code>\r
530                                                                   <scientific_name>Sus scrofa</scientific_name>\r
531                                                                   <common_name>Pig</common_name>\r
532                                                                   <rank>species</rank>\r
533                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>\r
534                                                                 </taxonomy>\r
535                                                               </clade>\r
536                                                             </clade>\r
537                                                             <clade>\r
538                                                               <taxonomy>\r
539                                                                 <id provider="uniprot">30538</id>\r
540                                                                 <code>LAMPA</code>\r
541                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>\r
542                                                                 <common_name>Alpaca</common_name>\r
543                                                                 <synonym>Lama pacos</synonym>\r
544                                                                 <rank>species</rank>\r
545                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>\r
546                                                               </taxonomy>\r
547                                                             </clade>\r
548                                                           </clade>\r
549                                                           <clade>\r
550                                                             <taxonomy>\r
551                                                               <id provider="uniprot">9796</id>\r
552                                                               <code>HORSE</code>\r
553                                                               <scientific_name>Equus caballus</scientific_name>\r
554                                                               <common_name>Horse</common_name>\r
555                                                               <rank>species</rank>\r
556                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>\r
557                                                             </taxonomy>\r
558                                                           </clade>\r
559                                                         </clade>\r
560                                                         <clade>\r
561                                                           <taxonomy>\r
562                                                             <id provider="uniprot">9397</id>\r
563                                                             <scientific_name>Chiroptera</scientific_name>\r
564                                                             <common_name>Bats</common_name>\r
565                                                             <rank>order</rank>\r
566                                                           </taxonomy>\r
567                                                           <clade>\r
568                                                             <taxonomy>\r
569                                                               <id provider="uniprot">59463</id>\r
570                                                               <code>MYOLU</code>\r
571                                                               <scientific_name>Myotis lucifugus</scientific_name>\r
572                                                               <common_name>Little brown bat</common_name>\r
573                                                               <rank>species</rank>\r
574                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>\r
575                                                             </taxonomy>\r
576                                                           </clade>\r
577                                                           <clade>\r
578                                                             <taxonomy>\r
579                                                               <id provider="uniprot">132908</id>\r
580                                                               <code>PTEVA</code>\r
581                                                               <scientific_name>Pteropus vampyrus</scientific_name>\r
582                                                               <common_name>Large flying fox</common_name>\r
583                                                               <rank>species</rank>\r
584                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>\r
585                                                             </taxonomy>\r
586                                                           </clade>\r
587                                                         </clade>\r
588                                                       </clade>\r
589                                                       <clade>\r
590                                                         <name>Carnivora</name>\r
591                                                         <taxonomy>\r
592                                                           <id provider="uniprot">33554</id>\r
593                                                           <scientific_name>Carnivora</scientific_name>\r
594                                                           <rank>order</rank>\r
595                                                         </taxonomy>\r
596                                                         <clade>\r
597                                                           <taxonomy>\r
598                                                             <id provider="uniprot">379584</id>\r
599                                                             <scientific_name>Caniformia</scientific_name>\r
600                                                             <rank>suborder</rank>\r
601                                                           </taxonomy>\r
602                                                           <clade>\r
603                                                             <taxonomy>\r
604                                                               <id provider="uniprot">9646</id>\r
605                                                               <code>AILME</code>\r
606                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>\r
607                                                               <common_name>Giant panda</common_name>\r
608                                                               <rank>species</rank>\r
609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>\r
610                                                             </taxonomy>\r
611                                                           </clade>\r
612                                                           <clade>\r
613                                                             <taxonomy>\r
614                                                               <id provider="uniprot">9615</id>\r
615                                                               <code>CANFA</code>\r
616                                                               <scientific_name>Canis familiaris</scientific_name>\r
617                                                               <common_name>Dog</common_name>\r
618                                                               <synonym>Canis lupus familiaris</synonym>\r
619                                                               <rank>subspecies</rank>\r
620                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>\r
621                                                             </taxonomy>\r
622                                                           </clade>\r
623                                                         </clade>\r
624                                                         <clade>\r
625                                                           <taxonomy>\r
626                                                             <id provider="uniprot">9685</id>\r
627                                                             <code>FELCA</code>\r
628                                                             <scientific_name>Felis catus</scientific_name>\r
629                                                             <common_name>Cat</common_name>\r
630                                                             <synonym>Felis silvestris catus</synonym>\r
631                                                             <rank>species</rank>\r
632                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>\r
633                                                           </taxonomy>\r
634                                                         </clade>\r
635                                                       </clade>\r
636                                                     </clade>\r
637                                                     <clade>\r
638                                                       <taxonomy>\r
639                                                         <id provider="uniprot">9362</id>\r
640                                                         <scientific_name>Insectivora</scientific_name>\r
641                                                         <common_name>hedgehogs, shrews, moles and others</common_name>\r
642                                                         <rank>order</rank>\r
643                                                       </taxonomy>\r
644                                                       <clade>\r
645                                                         <taxonomy>\r
646                                                           <id provider="uniprot">9365</id>\r
647                                                           <code>ERIEU</code>\r
648                                                           <scientific_name>Erinaceus europaeus</scientific_name>\r
649                                                           <common_name>Western European hedgehog</common_name>\r
650                                                           <rank>species</rank>\r
651                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>\r
652                                                         </taxonomy>\r
653                                                       </clade>\r
654                                                       <clade>\r
655                                                         <taxonomy>\r
656                                                           <id provider="uniprot">42254</id>\r
657                                                           <code>SORAR</code>\r
658                                                           <scientific_name>Sorex araneus</scientific_name>\r
659                                                           <common_name>Eurasian common shrew</common_name>\r
660                                                           <synonym>European shrew</synonym>\r
661                                                           <rank>species</rank>\r
662                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>\r
663                                                         </taxonomy>\r
664                                                       </clade>\r
665                                                     </clade>\r
666                                                   </clade>\r
667                                                 </clade>\r
668                                                 <clade>\r
669                                                   <taxonomy>\r
670                                                     <scientific_name>Atlantogenata</scientific_name>\r
671                                                   </taxonomy>\r
672                                                   <clade>\r
673                                                     <taxonomy>\r
674                                                       <id provider="uniprot">311790</id>\r
675                                                       <scientific_name>Afrotheria</scientific_name>\r
676                                                       <rank>superorder</rank>\r
677                                                     </taxonomy>\r
678                                                     <clade>\r
679                                                       <taxonomy>\r
680                                                         <scientific_name>Paenungulata</scientific_name>\r
681                                                       </taxonomy>\r
682                                                       <clade>\r
683                                                         <taxonomy>\r
684                                                           <id provider="uniprot">9785</id>\r
685                                                           <code>LOXAF</code>\r
686                                                           <scientific_name>Loxodonta africana</scientific_name>\r
687                                                           <common_name>African savanna elephant</common_name>\r
688                                                           <rank>species</rank>\r
689                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>\r
690                                                         </taxonomy>\r
691                                                       </clade>\r
692                                                       <clade>\r
693                                                         <taxonomy>\r
694                                                           <id provider="uniprot">9813</id>\r
695                                                           <code>PROCA</code>\r
696                                                           <scientific_name>Procavia capensis</scientific_name>\r
697                                                           <common_name>Cape hyrax</common_name>\r
698                                                           <synonym>Rock dassie</synonym>\r
699                                                           <rank>species</rank>\r
700                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>\r
701                                                         </taxonomy>\r
702                                                       </clade>\r
703                                                     </clade>\r
704                                                     <clade>\r
705                                                       <taxonomy>\r
706                                                         <id provider="uniprot">9371</id>\r
707                                                         <code>ECHTE</code>\r
708                                                         <scientific_name>Echinops telfairi</scientific_name>\r
709                                                         <common_name>Lesser hedgehog tenrec</common_name>\r
710                                                         <rank>species</rank>\r
711                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>\r
712                                                       </taxonomy>\r
713                                                     </clade>\r
714                                                   </clade>\r
715                                                   <clade>\r
716                                                     <taxonomy>\r
717                                                       <id provider="uniprot">9348</id>\r
718                                                       <scientific_name>Xenarthra</scientific_name>\r
719                                                       <synonym>Edentata</synonym>\r
720                                                       <rank>superorder</rank>\r
721                                                     </taxonomy>\r
722                                                     <clade>\r
723                                                       <taxonomy>\r
724                                                         <id provider="uniprot">9358</id>\r
725                                                         <code>CHOHO</code>\r
726                                                         <scientific_name>Choloepus hoffmanni</scientific_name>\r
727                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>\r
728                                                         <rank>species</rank>\r
729                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>\r
730                                                       </taxonomy>\r
731                                                     </clade>\r
732                                                     <clade>\r
733                                                       <taxonomy>\r
734                                                         <id provider="uniprot">9361</id>\r
735                                                         <code>DASNO</code>\r
736                                                         <scientific_name>Dasypus novemcinctus</scientific_name>\r
737                                                         <common_name>Nine-banded armadillo</common_name>\r
738                                                         <rank>species</rank>\r
739                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>\r
740                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>\r
741                                                       </taxonomy>\r
742                                                     </clade>\r
743                                                   </clade>\r
744                                                 </clade>\r
745                                               </clade>\r
746                                               <clade>\r
747                                                 <taxonomy>\r
748                                                   <id provider="uniprot">9263</id>\r
749                                                   <scientific_name>Metatheria</scientific_name>\r
750                                                   <common_name>Marsupials</common_name>\r
751                                                 </taxonomy>\r
752                                                 <distribution>\r
753                                                   <point geodetic_datum="?" alt_unit="?">\r
754                                                     <lat>0</lat>\r
755                                                     <long>0</long>\r
756                                                     <alt>0</alt>\r
757                                                   </point>\r
758                                                 </distribution>\r
759                                                 <reference doi="10.1016/j.ympev.2004.05.004">\r
760                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>\r
761                                                 </reference>\r
762                                                 <reference>\r
763                                                 </reference>\r
764                                                 <clade>\r
765                                                   <taxonomy>\r
766                                                     <scientific_name>Eometatheria</scientific_name>\r
767                                                   </taxonomy>\r
768                                                   <clade>\r
769                                                     <taxonomy>\r
770                                                       <id provider="uniprot">9315</id>\r
771                                                       <code>MACEU</code>\r
772                                                       <scientific_name>Macropus eugenii</scientific_name>\r
773                                                       <common_name>Tammar wallaby</common_name>\r
774                                                       <rank>species</rank>\r
775                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>\r
776                                                     </taxonomy>\r
777                                                   </clade>\r
778                                                   <clade>\r
779                                                     <taxonomy>\r
780                                                       <id provider="uniprot">9305</id>\r
781                                                       <code>SARHA</code>\r
782                                                       <scientific_name>Sarcophilus harrisii</scientific_name>\r
783                                                       <common_name>Tasmanian devil</common_name>\r
784                                                       <synonym>Sarcophilus laniarius</synonym>\r
785                                                       <rank>species</rank>\r
786                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>\r
787                                                     </taxonomy>\r
788                                                   </clade>\r
789                                                 </clade>\r
790                                                 <clade>\r
791                                                   <taxonomy>\r
792                                                     <id provider="uniprot">13616</id>\r
793                                                     <code>MONDO</code>\r
794                                                     <scientific_name>Monodelphis domestica</scientific_name>\r
795                                                     <common_name>Short-tailed gray opossum</common_name>\r
796                                                     <rank>species</rank>\r
797                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>\r
798                                                   </taxonomy>\r
799                                                 </clade>\r
800                                               </clade>\r
801                                             </clade>\r
802                                             <clade>\r
803                                               <taxonomy>\r
804                                                 <id provider="uniprot">9258</id>\r
805                                                 <code>ORNAN</code>\r
806                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>\r
807                                                 <common_name>Duckbill platypus</common_name>\r
808                                                 <rank>species</rank>\r
809                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>\r
810                                               </taxonomy>\r
811                                             </clade>\r
812                                           </clade>\r
813                                           <clade>\r
814                                             <name>Diapsida</name>\r
815                                             <clade>\r
816                                               <name>Neognathae</name>\r
817                                               <taxonomy>\r
818                                                 <id provider="uniprot">8825</id>\r
819                                                 <scientific_name>Neognathae</scientific_name>\r
820                                                 <rank>superorder</rank>\r
821                                               </taxonomy>\r
822                                               <clade>\r
823                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>\r
824                                                 <clade>\r
825                                                   <taxonomy>\r
826                                                     <id provider="uniprot">9005</id>\r
827                                                     <scientific_name>Phasianidae</scientific_name>\r
828                                                     <rank>family</rank>\r
829                                                   </taxonomy>\r
830                                                   <clade>\r
831                                                     <taxonomy>\r
832                                                       <id provider="uniprot">9031</id>\r
833                                                       <code>CHICK</code>\r
834                                                       <scientific_name>Gallus gallus</scientific_name>\r
835                                                       <common_name>Chicken</common_name>\r
836                                                       <synonym>Gallus domesticus</synonym>\r
837                                                       <rank>species</rank>\r
838                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>\r
839                                                     </taxonomy>\r
840                                                   </clade>\r
841                                                   <clade>\r
842                                                     <taxonomy>\r
843                                                       <id provider="uniprot">9103</id>\r
844                                                       <code>MELGA</code>\r
845                                                       <scientific_name>Meleagris gallopavo</scientific_name>\r
846                                                       <common_name>Common turkey</common_name>\r
847                                                       <rank>species</rank>\r
848                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>\r
849                                                     </taxonomy>\r
850                                                   </clade>\r
851                                                 </clade>\r
852                                                 <clade>\r
853                                                   <taxonomy>\r
854                                                     <id provider="uniprot">8839</id>\r
855                                                     <code>ANAPL</code>\r
856                                                     <scientific_name>Anas platyrhynchos</scientific_name>\r
857                                                     <common_name>Domestic duck</common_name>\r
858                                                     <synonym>Anas boschas</synonym>\r
859                                                     <rank>species</rank>\r
860                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>\r
861                                                   </taxonomy>\r
862                                                 </clade>\r
863                                               </clade>\r
864                                               <clade>\r
865                                                 <taxonomy>\r
866                                                   <id provider="uniprot">59729</id>\r
867                                                   <code>TAEGU</code>\r
868                                                   <scientific_name>Taeniopygia guttata</scientific_name>\r
869                                                   <common_name>Zebra finch</common_name>\r
870                                                   <synonym>Poephila guttata</synonym>\r
871                                                   <rank>species</rank>\r
872                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>\r
873                                                 </taxonomy>\r
874                                               </clade>\r
875                                             </clade>\r
876                                             <clade>\r
877                                               <taxonomy>\r
878                                                 <id provider="eol">795869</id>\r
879                                                 <code>ANOCA</code>\r
880                                                 <scientific_name>Anolis carolinensis</scientific_name>\r
881                                                 <authority>Voigt, 1832</authority>\r
882                                                 <common_name>Green anole</common_name>\r
883                                                 <synonym>American chameleon</synonym>\r
884                                                 <rank>species</rank>\r
885                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>\r
886                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>\r
887                                               </taxonomy>\r
888                                             </clade>\r
889                                           </clade>\r
890                                         </clade>\r
891                                         <clade>\r
892                                           <taxonomy>\r
893                                             <id provider="uniprot">8364</id>\r
894                                             <code>XENTR</code>\r
895                                             <scientific_name>Xenopus tropicalis</scientific_name>\r
896                                             <common_name>Western clawed frog</common_name>\r
897                                             <synonym>Silurana tropicalis</synonym>\r
898                                             <rank>species</rank>\r
899                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>\r
900                                           </taxonomy>\r
901                                         </clade>\r
902                                       </clade>\r
903                                       <clade>\r
904                                         <name>Teleostei</name>\r
905                                         <taxonomy>\r
906                                           <id provider="uniprot">32443</id>\r
907                                           <scientific_name>Teleostei</scientific_name>\r
908                                         </taxonomy>\r
909                                         <clade>\r
910                                           <taxonomy>\r
911                                             <id provider="uniprot">123368</id>\r
912                                             <scientific_name>Acanthomorpha</scientific_name>\r
913                                           </taxonomy>\r
914                                           <clade>\r
915                                             <taxonomy>\r
916                                               <id provider="uniprot">32485</id>\r
917                                               <scientific_name>Percomorpha</scientific_name>\r
918                                             </taxonomy>\r
919                                             <clade>\r
920                                               <name>Smegmamorpha</name>\r
921                                               <clade>\r
922                                                 <taxonomy>\r
923                                                   <id provider="uniprot">69293</id>\r
924                                                   <code>GASAC</code>\r
925                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>\r
926                                                   <common_name>Three-spined stickleback</common_name>\r
927                                                   <rank>species</rank>\r
928                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>\r
929                                                 </taxonomy>\r
930                                               </clade>\r
931                                               <clade>\r
932                                                 <taxonomy>\r
933                                                   <id provider="uniprot">8090</id>\r
934                                                   <code>ORYLA</code>\r
935                                                   <scientific_name>Oryzias latipes</scientific_name>\r
936                                                   <common_name>Medaka fish</common_name>\r
937                                                   <synonym>Japanese ricefish</synonym>\r
938                                                   <rank>species</rank>\r
939                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>\r
940                                                 </taxonomy>\r
941                                               </clade>\r
942                                             </clade>\r
943                                             <clade>\r
944                                               <taxonomy>\r
945                                                 <id provider="uniprot">31031</id>\r
946                                                 <scientific_name>Tetraodontidae</scientific_name>\r
947                                                 <common_name>puffers</common_name>\r
948                                                 <rank>family</rank>\r
949                                               </taxonomy>\r
950                                               <clade>\r
951                                                 <taxonomy>\r
952                                                   <id provider="uniprot">31033</id>\r
953                                                   <code>FUGRU</code>\r
954                                                   <scientific_name>Takifugu rubripes</scientific_name>\r
955                                                   <common_name>Japanese pufferfish</common_name>\r
956                                                   <synonym>Fugu rubripes</synonym>\r
957                                                   <rank>species</rank>\r
958                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>\r
959                                                 </taxonomy>\r
960                                               </clade>\r
961                                               <clade>\r
962                                                 <taxonomy>\r
963                                                   <id provider="uniprot">99883</id>\r
964                                                   <code>TETNG</code>\r
965                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>\r
966                                                   <common_name>Green puffer</common_name>\r
967                                                   <synonym>Chelonodon nigroviridis</synonym>\r
968                                                   <rank>species</rank>\r
969                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>\r
970                                                 </taxonomy>\r
971                                               </clade>\r
972                                             </clade>\r
973                                           </clade>\r
974                                           <clade>\r
975                                             <taxonomy>\r
976                                               <id provider="uniprot">8049</id>\r
977                                               <code>GADMO</code>\r
978                                               <scientific_name>Gadus morhua</scientific_name>\r
979                                               <common_name>Atlantic cod</common_name>\r
980                                               <rank>species</rank>\r
981                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>\r
982                                             </taxonomy>\r
983                                           </clade>\r
984                                         </clade>\r
985                                         <clade>\r
986                                           <taxonomy>\r
987                                             <id provider="uniprot">7955</id>\r
988                                             <code>DANRE</code>\r
989                                             <scientific_name>Danio rerio</scientific_name>\r
990                                             <common_name>Zebrafish</common_name>\r
991                                             <synonym>Brachydanio rerio</synonym>\r
992                                             <rank>species</rank>\r
993                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>\r
994                                           </taxonomy>\r
995                                         </clade>\r
996                                       </clade>\r
997                                     </clade>\r
998                                     <clade>\r
999                                       <taxonomy>\r
1000                                         <id provider="uniprot">7868</id>\r
1001                                         <code>CALMI</code>\r
1002                                         <scientific_name>Callorhynchus milii</scientific_name>\r
1003                                         <common_name>Australian ghost shark</common_name>\r
1004                                         <synonym>Australian ghost shark</synonym>\r
1005                                         <rank>species</rank>\r
1006                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>\r
1007                                       </taxonomy>\r
1008                                     </clade>\r
1009                                   </clade>\r
1010                                   <clade>\r
1011                                     <taxonomy>\r
1012                                       <id provider="uniprot">7757</id>\r
1013                                       <code>PETMA</code>\r
1014                                       <scientific_name>Petromyzon marinus</scientific_name>\r
1015                                       <common_name>Sea lamprey</common_name>\r
1016                                       <rank>species</rank>\r
1017                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>\r
1018                                     </taxonomy>\r
1019                                   </clade>\r
1020                                 </clade>\r
1021                                 <clade>\r
1022                                   <name>Urochordata</name>\r
1023                                   <taxonomy>\r
1024                                     <id provider="uniprot">7712</id>\r
1025                                     <scientific_name>Urochordata</scientific_name>\r
1026                                     <rank>subphylum</rank>\r
1027                                   </taxonomy>\r
1028                                   <clade>\r
1029                                     <taxonomy>\r
1030                                       <id provider="uniprot">7718</id>\r
1031                                       <scientific_name>Ciona</scientific_name>\r
1032                                       <rank>genus</rank>\r
1033                                     </taxonomy>\r
1034                                     <clade>\r
1035                                       <taxonomy>\r
1036                                         <id provider="uniprot">7719</id>\r
1037                                         <code>CIOIN</code>\r
1038                                         <scientific_name>Ciona intestinalis</scientific_name>\r
1039                                         <common_name>Transparent sea squirt</common_name>\r
1040                                         <synonym>Ascidia intestinalis</synonym>\r
1041                                         <rank>species</rank>\r
1042                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>\r
1043                                       </taxonomy>\r
1044                                     </clade>\r
1045                                     <clade>\r
1046                                       <taxonomy>\r
1047                                         <id provider="uniprot">51511</id>\r
1048                                         <code>CIOSA</code>\r
1049                                         <scientific_name>Ciona savignyi</scientific_name>\r
1050                                         <common_name>Pacific transparent sea squirt</common_name>\r
1051                                         <rank>species</rank>\r
1052                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>\r
1053                                       </taxonomy>\r
1054                                     </clade>\r
1055                                   </clade>\r
1056                                   <clade>\r
1057                                     <taxonomy>\r
1058                                       <id provider="ncbi">34765</id>\r
1059                                       <code>OIKDI</code>\r
1060                                       <scientific_name>Oikopleura dioica</scientific_name>\r
1061                                       <common_name>Tunicate</common_name>\r
1062                                       <rank>species</rank>\r
1063                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>\r
1064                                     </taxonomy>\r
1065                                   </clade>\r
1066                                 </clade>\r
1067                               </clade>\r
1068                               <clade>\r
1069                                 <taxonomy>\r
1070                                   <id provider="uniprot">7739</id>\r
1071                                   <code>BRAFL</code>\r
1072                                   <scientific_name>Branchiostoma floridae</scientific_name>\r
1073                                   <common_name>Florida lancelet</common_name>\r
1074                                   <synonym>Amphioxus</synonym>\r
1075                                   <rank>species</rank>\r
1076                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>\r
1077                                 </taxonomy>\r
1078                               </clade>\r
1079                             </clade>\r
1080                             <clade>\r
1081                               <name>Hemichordata &amp; Echinodermata</name>\r
1082                               <clade>\r
1083                                 <taxonomy>\r
1084                                   <id provider="uniprot">10224</id>\r
1085                                   <code>SACKO</code>\r
1086                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>\r
1087                                   <authority>Agassiz, 1873</authority>\r
1088                                   <common_name>Acorn worm</common_name>\r
1089                                   <rank>species</rank>\r
1090                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>\r
1091                                 </taxonomy>\r
1092                               </clade>\r
1093                               <clade>\r
1094                                 <taxonomy>\r
1095                                   <id provider="uniprot">7668</id>\r
1096                                   <code>STRPU</code>\r
1097                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>\r
1098                                   <common_name>Purple sea urchin</common_name>\r
1099                                   <rank>species</rank>\r
1100                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>\r
1101                                 </taxonomy>\r
1102                               </clade>\r
1103                             </clade>\r
1104                           </clade>\r
1105                           <clade>\r
1106                             <name>Protostomia</name>\r
1107                             <clade>\r
1108                               <name>Ecdysozoa</name>\r
1109                               <clade>\r
1110                                 <taxonomy>\r
1111                                   <id provider="uniprot">6656</id>\r
1112                                   <scientific_name>Arthropoda</scientific_name>\r
1113                                   <rank>phylum</rank>\r
1114                                 </taxonomy>\r
1115                                 <clade>\r
1116                                   <taxonomy>\r
1117                                     <id provider="uniprot">197563</id>\r
1118                                     <scientific_name>Mandibulata</scientific_name>\r
1119                                   </taxonomy>\r
1120                                   <clade>\r
1121                                     <name>Pancrustacea</name>\r
1122                                     <clade>\r
1123                                       <taxonomy>\r
1124                                         <id provider="uniprot">33340</id>\r
1125                                         <scientific_name>Neoptera</scientific_name>\r
1126                                         <rank>subclass</rank>\r
1127                                       </taxonomy>\r
1128                                       <clade>\r
1129                                         <taxonomy>\r
1130                                           <id provider="uniprot">33392</id>\r
1131                                           <scientific_name>Endopterygota</scientific_name>\r
1132                                           <rank>infraclass</rank>\r
1133                                         </taxonomy>\r
1134                                         <clade>\r
1135                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>\r
1136                                           <clade>\r
1137                                             <name>Lepidoptera &amp; Diptera</name>\r
1138                                             <clade>\r
1139                                               <taxonomy>\r
1140                                                 <id provider="uniprot">7147</id>\r
1141                                                 <scientific_name>Diptera</scientific_name>\r
1142                                                 <rank>order</rank>\r
1143                                               </taxonomy>\r
1144                                               <clade>\r
1145                                                 <taxonomy>\r
1146                                                   <id provider="uniprot">7157</id>\r
1147                                                   <scientific_name>Culicidae</scientific_name>\r
1148                                                   <common_name>mosquitos</common_name>\r
1149                                                   <rank>family</rank>\r
1150                                                 </taxonomy>\r
1151                                                 <clade>\r
1152                                                   <taxonomy>\r
1153                                                     <id provider="uniprot">7159</id>\r
1154                                                     <code>AEDAE</code>\r
1155                                                     <scientific_name>Aedes aegypti</scientific_name>\r
1156                                                     <common_name>Yellowfever mosquito</common_name>\r
1157                                                     <synonym>Culex aegypti</synonym>\r
1158                                                     <rank>species</rank>\r
1159                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>\r
1160                                                   </taxonomy>\r
1161                                                 </clade>\r
1162                                                 <clade>\r
1163                                                   <taxonomy>\r
1164                                                     <id provider="uniprot">7165</id>\r
1165                                                     <code>ANOGA</code>\r
1166                                                     <scientific_name>Anopheles gambiae</scientific_name>\r
1167                                                     <common_name>African malaria mosquito</common_name>\r
1168                                                     <rank>species</rank>\r
1169                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>\r
1170                                                   </taxonomy>\r
1171                                                 </clade>\r
1172                                               </clade>\r
1173                                               <clade>\r
1174                                                 <taxonomy>\r
1175                                                   <id provider="uniprot">32341</id>\r
1176                                                   <scientific_name>Sophophora</scientific_name>\r
1177                                                   <rank>subgenus</rank>\r
1178                                                 </taxonomy>\r
1179                                                 <clade>\r
1180                                                   <taxonomy>\r
1181                                                     <id provider="uniprot">7227</id>\r
1182                                                     <code>DROME</code>\r
1183                                                     <scientific_name>Drosophila melanogaster</scientific_name>\r
1184                                                     <common_name>Fruit fly</common_name>\r
1185                                                     <rank>species</rank>\r
1186                                                   </taxonomy>\r
1187                                                 </clade>\r
1188                                                 <clade>\r
1189                                                   <taxonomy>\r
1190                                                     <id provider="uniprot">46245</id>\r
1191                                                     <code>DROPS</code>\r
1192                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>\r
1193                                                     <common_name>Fruit fly</common_name>\r
1194                                                     <rank>subspecies</rank>\r
1195                                                   </taxonomy>\r
1196                                                 </clade>\r
1197                                               </clade>\r
1198                                             </clade>\r
1199                                             <clade>\r
1200                                               <taxonomy>\r
1201                                                 <id provider="uniprot">7091</id>\r
1202                                                 <code>BOMMO</code>\r
1203                                                 <scientific_name>Bombyx mori</scientific_name>\r
1204                                                 <common_name>Silk moth</common_name>\r
1205                                                 <rank>species</rank>\r
1206                                               </taxonomy>\r
1207                                             </clade>\r
1208                                           </clade>\r
1209                                           <clade>\r
1210                                             <taxonomy>\r
1211                                               <id provider="uniprot">7400</id>\r
1212                                               <scientific_name>Apocrita</scientific_name>\r
1213                                               <common_name>wasps, ants and bees</common_name>\r
1214                                             </taxonomy>\r
1215                                             <clade>\r
1216                                               <taxonomy>\r
1217                                                 <id provider="uniprot">7460</id>\r
1218                                                 <code>APIME</code>\r
1219                                                 <scientific_name>Apis mellifera</scientific_name>\r
1220                                                 <common_name>Honeybee</common_name>\r
1221                                                 <rank>species</rank>\r
1222                                               </taxonomy>\r
1223                                             </clade>\r
1224                                             <clade>\r
1225                                               <taxonomy>\r
1226                                                 <id provider="uniprot">7425</id>\r
1227                                                 <code>NASVI</code>\r
1228                                                 <scientific_name>Nasonia vitripennis</scientific_name>\r
1229                                                 <common_name>Parasitic wasp</common_name>\r
1230                                                 <rank>species</rank>\r
1231                                               </taxonomy>\r
1232                                             </clade>\r
1233                                           </clade>\r
1234                                         </clade>\r
1235                                         <clade>\r
1236                                           <taxonomy>\r
1237                                             <id provider="uniprot">7070</id>\r
1238                                             <code>TRICA</code>\r
1239                                             <scientific_name>Tribolium castaneum</scientific_name>\r
1240                                             <common_name>Red flour beetle</common_name>\r
1241                                             <rank>species</rank>\r
1242                                           </taxonomy>\r
1243                                         </clade>\r
1244                                       </clade>\r
1245                                       <clade>\r
1246                                         <taxonomy>\r
1247                                           <id provider="uniprot">7524</id>\r
1248                                           <scientific_name>Hemiptera</scientific_name>\r
1249                                           <rank>order</rank>\r
1250                                         </taxonomy>\r
1251                                         <clade>\r
1252                                           <taxonomy>\r
1253                                             <id provider="uniprot">7029</id>\r
1254                                             <code>ACYPI</code>\r
1255                                             <scientific_name>Acyrthosiphon pisum</scientific_name>\r
1256                                             <common_name>Pea aphid</common_name>\r
1257                                             <rank>species</rank>\r
1258                                           </taxonomy>\r
1259                                         </clade>\r
1260                                         <clade>\r
1261                                           <taxonomy>\r
1262                                             <id provider="uniprot">13249</id>\r
1263                                             <code>RHOPR</code>\r
1264                                             <scientific_name>Rhodnius prolixus</scientific_name>\r
1265                                             <common_name>Triatomid bug</common_name>\r
1266                                             <rank>species</rank>\r
1267                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>\r
1268                                           </taxonomy>\r
1269                                         </clade>\r
1270                                       </clade>\r
1271                                     </clade>\r
1272                                     <clade>\r
1273                                       <taxonomy>\r
1274                                         <id provider="uniprot">6658</id>\r
1275                                         <scientific_name>Branchiopoda</scientific_name>\r
1276                                         <rank>class</rank>\r
1277                                       </taxonomy>\r
1278                                       <clade>\r
1279                                         <taxonomy>\r
1280                                           <id provider="uniprot">6661</id>\r
1281                                           <code>ARTSF</code>\r
1282                                           <scientific_name>Artemia franciscana</scientific_name>\r
1283                                           <common_name>Brine shrimp</common_name>\r
1284                                           <synonym>Artemia sanfranciscana</synonym>\r
1285                                           <rank>species</rank>\r
1286                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>\r
1287                                         </taxonomy>\r
1288                                       </clade>\r
1289                                       <clade>\r
1290                                         <taxonomy>\r
1291                                           <id provider="uniprot">6669</id>\r
1292                                           <code>DAPPU</code>\r
1293                                           <scientific_name>Daphnia pulex</scientific_name>\r
1294                                           <common_name>Water flea</common_name>\r
1295                                           <rank>species</rank>\r
1296                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>\r
1297                                         </taxonomy>\r
1298                                       </clade>\r
1299                                     </clade>\r
1300                                   </clade>\r
1301                                   <clade>\r
1302                                     <taxonomy>\r
1303                                       <id provider="uniprot">61985</id>\r
1304                                       <scientific_name>Myriapoda</scientific_name>\r
1305                                       <rank>subphylum</rank>\r
1306                                     </taxonomy>\r
1307                                     <clade>\r
1308                                       <taxonomy>\r
1309                                         <id provider="uniprot">7553</id>\r
1310                                         <scientific_name>Diplopoda</scientific_name>\r
1311                                         <common_name>millipedes</common_name>\r
1312                                         <rank>class</rank>\r
1313                                       </taxonomy>\r
1314                                       <clade>\r
1315                                         <taxonomy>\r
1316                                           <id provider="uniprot">118561</id>\r
1317                                           <scientific_name>Helminthomorpha</scientific_name>\r
1318                                           <rank>subclass</rank>\r
1319                                         </taxonomy>\r
1320                                         <clade>\r
1321                                           <taxonomy>\r
1322                                             <id provider="uniprot">364406</id>\r
1323                                             <scientific_name>Antrokoreana gracilipes</scientific_name>\r
1324                                             <rank>species</rank>\r
1325                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>\r
1326                                           </taxonomy>\r
1327                                         </clade>\r
1328                                         <clade>\r
1329                                           <taxonomy>\r
1330                                             <id provider="uniprot">174156</id>\r
1331                                             <code>NARAN</code>\r
1332                                             <scientific_name>Narceus annularis</scientific_name>\r
1333                                             <common_name>Millipede</common_name>\r
1334                                             <rank>species</rank>\r
1335                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>\r
1336                                           </taxonomy>\r
1337                                         </clade>\r
1338                                       </clade>\r
1339                                       <clade>\r
1340                                         <taxonomy>\r
1341                                           <id provider="uniprot">52428</id>\r
1342                                           <scientific_name>Polyxenus lagurus</scientific_name>\r
1343                                           <common_name>bristly millipede</common_name>\r
1344                                           <rank>species</rank>\r
1345                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>\r
1346                                         </taxonomy>\r
1347                                       </clade>\r
1348                                     </clade>\r
1349                                     <clade>\r
1350                                       <taxonomy>\r
1351                                         <id provider="uniprot">7540</id>\r
1352                                         <scientific_name>Chilopoda</scientific_name>\r
1353                                         <common_name>centipedes</common_name>\r
1354                                         <rank>class</rank>\r
1355                                       </taxonomy>\r
1356                                       <clade>\r
1357                                         <taxonomy>\r
1358                                           <id provider="uniprot">29022</id>\r
1359                                           <code>SCUCO</code>\r
1360                                           <scientific_name>Scutigera coleoptrata</scientific_name>\r
1361                                           <common_name>House centipede</common_name>\r
1362                                           <rank>species</rank>\r
1363                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>\r
1364                                         </taxonomy>\r
1365                                       </clade>\r
1366                                       <clade>\r
1367                                         <taxonomy>\r
1368                                           <id provider="uniprot">126957</id>\r
1369                                           <scientific_name>Strigamia maritima</scientific_name>\r
1370                                           <rank>species</rank>\r
1371                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>\r
1372                                         </taxonomy>\r
1373                                       </clade>\r
1374                                     </clade>\r
1375                                   </clade>\r
1376                                 </clade>\r
1377                                 <clade>\r
1378                                   <taxonomy>\r
1379                                     <id provider="uniprot">6945</id>\r
1380                                     <code>IXOSC</code>\r
1381                                     <scientific_name>Ixodes scapularis</scientific_name>\r
1382                                     <common_name>Black-legged tick</common_name>\r
1383                                     <synonym>Deer tick</synonym>\r
1384                                     <rank>species</rank>\r
1385                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>\r
1386                                   </taxonomy>\r
1387                                 </clade>\r
1388                               </clade>\r
1389                               <clade>\r
1390                                 <taxonomy>\r
1391                                   <id provider="uniprot">119089</id>\r
1392                                   <scientific_name>Chromadorea</scientific_name>\r
1393                                   <rank>class</rank>\r
1394                                 </taxonomy>\r
1395                                 <reference doi="10.1038/32160">\r
1396                                 </reference>\r
1397                                 <clade>\r
1398                                   <name>nematode Clade V</name>\r
1399                                   <clade>\r
1400                                     <name>Caenorhabditis</name>\r
1401                                     <taxonomy>\r
1402                                       <id provider="uniprot">6237</id>\r
1403                                       <scientific_name>Caenorhabditis</scientific_name>\r
1404                                       <rank>genus</rank>\r
1405                                     </taxonomy>\r
1406                                     <clade>\r
1407                                       <taxonomy>\r
1408                                         <id provider="uniprot">6238</id>\r
1409                                         <code>CAEBR</code>\r
1410                                         <scientific_name>Caenorhabditis briggsae</scientific_name>\r
1411                                         <rank>species</rank>\r
1412                                       </taxonomy>\r
1413                                     </clade>\r
1414                                     <clade>\r
1415                                       <taxonomy>\r
1416                                         <id provider="uniprot">6239</id>\r
1417                                         <code>CAEEL</code>\r
1418                                         <scientific_name>Caenorhabditis elegans</scientific_name>\r
1419                                         <rank>species</rank>\r
1420                                       </taxonomy>\r
1421                                     </clade>\r
1422                                   </clade>\r
1423                                   <clade>\r
1424                                     <taxonomy>\r
1425                                       <id provider="uniprot">54126</id>\r
1426                                       <code>PRIPA</code>\r
1427                                       <scientific_name>Pristionchus pacificus</scientific_name>\r
1428                                       <rank>species</rank>\r
1429                                     </taxonomy>\r
1430                                   </clade>\r
1431                                 </clade>\r
1432                                 <clade>\r
1433                                   <taxonomy>\r
1434                                     <id provider="uniprot">6279</id>\r
1435                                     <code>BRUMA</code>\r
1436                                     <scientific_name>Brugia malayi</scientific_name>\r
1437                                     <common_name>Filarial nematode worm</common_name>\r
1438                                     <rank>species</rank>\r
1439                                   </taxonomy>\r
1440                                 </clade>\r
1441                               </clade>\r
1442                             </clade>\r
1443                             <clade>\r
1444                               <name>Lophotrochozoa</name>\r
1445                               <clade>\r
1446                                 <name>Annelida &amp; Mollusca</name>\r
1447                                 <clade>\r
1448                                   <taxonomy>\r
1449                                     <id provider="uniprot">6340</id>\r
1450                                     <scientific_name>Annelida</scientific_name>\r
1451                                     <rank>phylum</rank>\r
1452                                   </taxonomy>\r
1453                                   <clade>\r
1454                                     <name>CAP</name>\r
1455                                     <taxonomy>\r
1456                                       <id provider="uniprot">283909</id>\r
1457                                       <scientific_name>Capitella teleta</scientific_name>\r
1458                                       <rank>species</rank>\r
1459                                     </taxonomy>\r
1460                                   </clade>\r
1461                                   <clade>\r
1462                                     <taxonomy>\r
1463                                       <id provider="uniprot">6412</id>\r
1464                                       <code>HELRO</code>\r
1465                                       <scientific_name>Helobdella robusta</scientific_name>\r
1466                                       <common_name>Californian leech</common_name>\r
1467                                       <rank>species</rank>\r
1468                                     </taxonomy>\r
1469                                   </clade>\r
1470                                 </clade>\r
1471                                 <clade>\r
1472                                   <taxonomy>\r
1473                                     <id provider="uniprot">225164</id>\r
1474                                     <code>LOTGI</code>\r
1475                                     <scientific_name>Lottia gigantea</scientific_name>\r
1476                                     <common_name>Owl limpet</common_name>\r
1477                                     <rank>species</rank>\r
1478                                   </taxonomy>\r
1479                                 </clade>\r
1480                               </clade>\r
1481                               <clade>\r
1482                                 <taxonomy>\r
1483                                   <id provider="uniprot">6157</id>\r
1484                                   <scientific_name>Platyhelminthes</scientific_name>\r
1485                                   <rank>phylum</rank>\r
1486                                 </taxonomy>\r
1487                                 <clade>\r
1488                                   <taxonomy>\r
1489                                     <id provider="uniprot">6183</id>\r
1490                                     <code>SCHMA</code>\r
1491                                     <scientific_name>Schistosoma mansoni</scientific_name>\r
1492                                     <common_name>Blood fluke</common_name>\r
1493                                     <rank>species</rank>\r
1494                                   </taxonomy>\r
1495                                 </clade>\r
1496                                 <clade>\r
1497                                   <taxonomy>\r
1498                                     <id provider="uniprot">79327</id>\r
1499                                     <code>SCHMD</code>\r
1500                                     <scientific_name>Schmidtea mediterranea</scientific_name>\r
1501                                     <common_name>Freshwater planarian flatworm</common_name>\r
1502                                     <rank>species</rank>\r
1503                                   </taxonomy>\r
1504                                 </clade>\r
1505                               </clade>\r
1506                             </clade>\r
1507                           </clade>\r
1508                         </clade>\r
1509                         <clade>\r
1510                           <name>Cnidaria</name>\r
1511                           <taxonomy>\r
1512                             <id provider="uniprot">6073</id>\r
1513                             <scientific_name>Cnidaria</scientific_name>\r
1514                             <rank>phylum</rank>\r
1515                           </taxonomy>\r
1516                           <clade>\r
1517                             <taxonomy>\r
1518                               <id provider="uniprot">6102</id>\r
1519                               <scientific_name>Hexacorallia</scientific_name>\r
1520                               <synonym>Ceriantipatharia</synonym>\r
1521                               <synonym>Zoantharia</synonym>\r
1522                               <rank>subclass</rank>\r
1523                             </taxonomy>\r
1524                             <clade>\r
1525                               <taxonomy>\r
1526                                 <id provider="uniprot">45351</id>\r
1527                                 <code>NEMVE</code>\r
1528                                 <scientific_name>Nematostella vectensis</scientific_name>\r
1529                                 <common_name>Starlet sea anemone</common_name>\r
1530                                 <rank>species</rank>\r
1531                               </taxonomy>\r
1532                             </clade>\r
1533                             <clade>\r
1534                               <taxonomy>\r
1535                                 <id provider="uniprot">70779</id>\r
1536                                 <code>ACRDI</code>\r
1537                                 <scientific_name>Acropora digitifera</scientific_name>\r
1538                                 <common_name>Staghorn coral</common_name>\r
1539                                 <rank>species</rank>\r
1540                                 <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>\r
1541                               </taxonomy>\r
1542                             </clade>\r
1543                           </clade>\r
1544                           <clade>\r
1545                             <taxonomy>\r
1546                               <id provider="eol">9119928</id>\r
1547                               <code>HYDMA</code>\r
1548                               <scientific_name>Hydra magnipapillata</scientific_name>\r
1549                               <authority>Ito, 1947</authority>\r
1550                               <rank>species</rank>\r
1551                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>\r
1552                             </taxonomy>\r
1553                           </clade>\r
1554                         </clade>\r
1555                       </clade>\r
1556                       <clade>\r
1557                         <taxonomy>\r
1558                           <id provider="uniprot">10228</id>\r
1559                           <code>TRIAD</code>\r
1560                           <scientific_name>Trichoplax adhaerens</scientific_name>\r
1561                           <synonym>Trichoplax reptans</synonym>\r
1562                           <rank>species</rank>\r
1563                         </taxonomy>\r
1564                         <reference doi="10.1073/pnas.0602076103">\r
1565                         </reference>\r
1566                       </clade>\r
1567                     </clade>\r
1568                     <clade>\r
1569                       <taxonomy>\r
1570                         <id provider="uniprot">400682</id>\r
1571                         <code>AMPQU</code>\r
1572                         <scientific_name>Amphimedon queenslandica</scientific_name>\r
1573                         <rank>species</rank>\r
1574                       </taxonomy>\r
1575                     </clade>\r
1576                   </clade>\r
1577                   <clade>\r
1578                     <taxonomy>\r
1579                       <id provider="uniprot">81524</id>\r
1580                       <scientific_name>Codonosigidae</scientific_name>\r
1581                       <rank>family</rank>\r
1582                     </taxonomy>\r
1583                     <clade>\r
1584                       <taxonomy>\r
1585                         <id provider="uniprot">81824</id>\r
1586                         <code>MONBE</code>\r
1587                         <scientific_name>Monosiga brevicollis</scientific_name>\r
1588                         <common_name>Choanoflagellate</common_name>\r
1589                         <rank>species</rank>\r
1590                       </taxonomy>\r
1591                     </clade>\r
1592                     <clade>\r
1593                       <taxonomy>\r
1594                         <id provider="uniprot">946362</id>\r
1595                         <code>SALS5</code>\r
1596                         <scientific_name>Salpingoeca rosetta</scientific_name>\r
1597                         <synonym>Proterospongia sp. ATCC 50818</synonym>\r
1598                         <synonym>Salpingoeca sp. ATCC 50818</synonym>\r
1599                         <rank>species</rank>\r
1600                       </taxonomy>\r
1601                     </clade>\r
1602                   </clade>\r
1603                 </clade>\r
1604                 <clade>\r
1605                   <name>Ichthyophonida &amp; Filasterea</name>\r
1606                   <clade>\r
1607                     <taxonomy>\r
1608                       <id provider="uniprot">198625</id>\r
1609                       <scientific_name>Ichthyophonida</scientific_name>\r
1610                       <rank>order</rank>\r
1611                     </taxonomy>\r
1612                     <clade>\r
1613                       <taxonomy>\r
1614                         <id provider="uniprot">4881</id>\r
1615                         <code>AMOPA</code>\r
1616                         <scientific_name>Amoebidium parasiticum</scientific_name>\r
1617                         <rank>species</rank>\r
1618                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>\r
1619                       </taxonomy>\r
1620                     </clade>\r
1621                     <clade>\r
1622                       <name>SPHARC</name>\r
1623                       <taxonomy>\r
1624                         <id provider="uniprot">72019</id>\r
1625                         <scientific_name>Sphaeroforma arctica</scientific_name>\r
1626                         <rank>species</rank>\r
1627                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>\r
1628                       </taxonomy>\r
1629                     </clade>\r
1630                   </clade>\r
1631                   <clade>\r
1632                     <taxonomy>\r
1633                       <scientific_name>Filasterea</scientific_name>\r
1634                     </taxonomy>\r
1635                     <reference doi="10.1371/journal.pone.0002098">\r
1636                     </reference>\r
1637                     <reference>\r
1638                     </reference>\r
1639                     <clade>\r
1640                       <name>CAPOWC</name>\r
1641                       <taxonomy>\r
1642                         <id provider="uniprot">192875</id>\r
1643                         <scientific_name>Capsaspora owczarzaki</scientific_name>\r
1644                         <rank>species</rank>\r
1645                       </taxonomy>\r
1646                     </clade>\r
1647                     <clade>\r
1648                       <name>MINVIB</name>\r
1649                       <taxonomy>\r
1650                         <id provider="uniprot">134558</id>\r
1651                         <scientific_name>Ministeria vibrans</scientific_name>\r
1652                         <rank>species</rank>\r
1653                       </taxonomy>\r
1654                     </clade>\r
1655                   </clade>\r
1656                 </clade>\r
1657               </clade>\r
1658               <clade>\r
1659                 <taxonomy>\r
1660                   <scientific_name>Holomycota</scientific_name>\r
1661                   <synonym>Nucletmycea</synonym>\r
1662                 </taxonomy>\r
1663                 <clade>\r
1664                   <taxonomy>\r
1665                     <id provider="uniprot">4751</id>\r
1666                     <scientific_name>Fungi</scientific_name>\r
1667                     <rank>kingdom</rank>\r
1668                   </taxonomy>\r
1669                   <clade>\r
1670                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>\r
1671                     <clade>\r
1672                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>\r
1673                       <clade>\r
1674                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>\r
1675                         <clade>\r
1676                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>\r
1677                           <clade>\r
1678                             <name>Dikarya &amp; Mucoromycotina</name>\r
1679                             <clade>\r
1680                               <taxonomy>\r
1681                                 <id provider="uniprot">451864</id>\r
1682                                 <scientific_name>Dikarya</scientific_name>\r
1683                                 <rank>subkingdom</rank>\r
1684                               </taxonomy>\r
1685                               <reference doi="10.1038/nature05110">\r
1686                               </reference>\r
1687                               <reference>\r
1688                               </reference>\r
1689                               <clade>\r
1690                                 <taxonomy>\r
1691                                   <id provider="uniprot">4890</id>\r
1692                                   <scientific_name>Ascomycota</scientific_name>\r
1693                                   <rank>phylum</rank>\r
1694                                 </taxonomy>\r
1695                                 <clade>\r
1696                                   <name>Pezizomycotina_Saccharomycetales</name>\r
1697                                   <clade>\r
1698                                     <taxonomy>\r
1699                                       <id provider="uniprot">147538</id>\r
1700                                       <scientific_name>Pezizomycotina</scientific_name>\r
1701                                       <synonym>Euascomycota</synonym>\r
1702                                       <rank>subphylum</rank>\r
1703                                     </taxonomy>\r
1704                                     <reference doi="0.3852/mycologia.98.6.1018">\r
1705                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>\r
1706                                     </reference>\r
1707                                     <reference>\r
1708                                     </reference>\r
1709                                     <clade>\r
1710                                       <taxonomy>\r
1711                                         <id provider="uniprot">716546</id>\r
1712                                         <scientific_name>Leotiomyceta</scientific_name>\r
1713                                       </taxonomy>\r
1714                                       <clade>\r
1715                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>\r
1716                                         <clade>\r
1717                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>\r
1718                                           <clade>\r
1719                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>\r
1720                                             <clade>\r
1721                                               <taxonomy>\r
1722                                                 <id provider="uniprot">715989</id>\r
1723                                                 <scientific_name>Sordariomyceta</scientific_name>\r
1724                                               </taxonomy>\r
1725                                               <clade>\r
1726                                                 <taxonomy>\r
1727                                                   <id provider="uniprot">147550</id>\r
1728                                                   <scientific_name>Sordariomycetes</scientific_name>\r
1729                                                   <rank>class</rank>\r
1730                                                 </taxonomy>\r
1731                                                 <clade>\r
1732                                                   <name>Magnaporthales &amp; Hypocreales</name>\r
1733                                                   <clade>\r
1734                                                     <taxonomy>\r
1735                                                       <id provider="uniprot">5125</id>\r
1736                                                       <scientific_name>Hypocreales</scientific_name>\r
1737                                                       <rank>order</rank>\r
1738                                                     </taxonomy>\r
1739                                                     <clade>\r
1740                                                       <name>ACRALC</name>\r
1741                                                       <taxonomy>\r
1742                                                         <id provider="uniprot">398408</id>\r
1743                                                         <scientific_name>Acremonium alcalophilum</scientific_name>\r
1744                                                         <rank>species</rank>\r
1745                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>\r
1746                                                       </taxonomy>\r
1747                                                     </clade>\r
1748                                                     <clade>\r
1749                                                       <taxonomy>\r
1750                                                         <id provider="uniprot">29875</id>\r
1751                                                         <code>TRIVE</code>\r
1752                                                         <scientific_name>Trichoderma virens</scientific_name>\r
1753                                                         <common_name>Gliocladium virens</common_name>\r
1754                                                         <synonym>Trichoderma virens</synonym>\r
1755                                                         <rank>species</rank>\r
1756                                                       </taxonomy>\r
1757                                                     </clade>\r
1758                                                   </clade>\r
1759                                                   <clade>\r
1760                                                     <taxonomy>\r
1761                                                       <id provider="uniprot">148305</id>\r
1762                                                       <code>MAGGR</code>\r
1763                                                       <scientific_name>Magnaporthe grisea</scientific_name>\r
1764                                                       <common_name>Rice blast fungus</common_name>\r
1765                                                       <synonym>Pyricularia grisea</synonym>\r
1766                                                       <rank>species</rank>\r
1767                                                     </taxonomy>\r
1768                                                   </clade>\r
1769                                                 </clade>\r
1770                                                 <clade>\r
1771                                                   <taxonomy>\r
1772                                                     <id provider="uniprot">5139</id>\r
1773                                                     <scientific_name>Sordariales</scientific_name>\r
1774                                                     <rank>order</rank>\r
1775                                                   </taxonomy>\r
1776                                                   <clade>\r
1777                                                     <taxonomy>\r
1778                                                       <id provider="uniprot">35718</id>\r
1779                                                       <scientific_name>Chaetomiaceae</scientific_name>\r
1780                                                       <rank>family</rank>\r
1781                                                     </taxonomy>\r
1782                                                     <clade>\r
1783                                                       <taxonomy>\r
1784                                                         <id provider="uniprot">35719</id>\r
1785                                                         <scientific_name>Thielavia</scientific_name>\r
1786                                                         <rank>genus</rank>\r
1787                                                       </taxonomy>\r
1788                                                       <clade>\r
1789                                                         <name>MYCTHE</name>\r
1790                                                         <taxonomy>\r
1791                                                           <id provider="uniprot">573728</id>\r
1792                                                           <scientific_name>Myceliophthora thermophila</scientific_name>\r
1793                                                           <authority>(Apinis) Oorschot 1977</authority>\r
1794                                                           <synonym>Sporotrichum thermophilum</synonym>\r
1795                                                           <synonym>anamorph of Thielavia heterothallica</synonym>\r
1796                                                           <rank>species</rank>\r
1797                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>\r
1798                                                         </taxonomy>\r
1799                                                       </clade>\r
1800                                                       <clade>\r
1801                                                         <name>THITER</name>\r
1802                                                         <taxonomy>\r
1803                                                           <id provider="eol">193532</id>\r
1804                                                           <scientific_name>Thielavia terrestris</scientific_name>\r
1805                                                           <authority>Malloch &amp; Cain 1972</authority>\r
1806                                                           <synonym>Acremonium alabamense</synonym>\r
1807                                                           <rank>species</rank>\r
1808                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>\r
1809                                                         </taxonomy>\r
1810                                                       </clade>\r
1811                                                     </clade>\r
1812                                                     <clade>\r
1813                                                       <taxonomy>\r
1814                                                         <id provider="eol">1029505</id>\r
1815                                                         <code>CHAGB</code>\r
1816                                                         <scientific_name>Chaetomium globosum</scientific_name>\r
1817                                                         <authority>Kunze 1817</authority>\r
1818                                                         <common_name>Soil fungus</common_name>\r
1819                                                         <rank>species</rank>\r
1820                                                       </taxonomy>\r
1821                                                     </clade>\r
1822                                                   </clade>\r
1823                                                   <clade>\r
1824                                                     <taxonomy>\r
1825                                                       <id provider="uniprot">5141</id>\r
1826                                                       <code>NEUCR</code>\r
1827                                                       <scientific_name>Neurospora crassa</scientific_name>\r
1828                                                       <rank>species</rank>\r
1829                                                     </taxonomy>\r
1830                                                   </clade>\r
1831                                                 </clade>\r
1832                                               </clade>\r
1833                                               <clade>\r
1834                                                 <taxonomy>\r
1835                                                   <id provider="uniprot">147548</id>\r
1836                                                   <scientific_name>Leotiomycetes</scientific_name>\r
1837                                                   <rank>class</rank>\r
1838                                                 </taxonomy>\r
1839                                                 <clade>\r
1840                                                   <taxonomy>\r
1841                                                     <id provider="uniprot">28983</id>\r
1842                                                     <scientific_name>Sclerotiniaceae</scientific_name>\r
1843                                                     <rank>family</rank>\r
1844                                                   </taxonomy>\r
1845                                                   <clade>\r
1846                                                     <taxonomy>\r
1847                                                       <id provider="uniprot">40559</id>\r
1848                                                       <code>BOTFU</code>\r
1849                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>\r
1850                                                       <common_name>Noble rot fungus</common_name>\r
1851                                                       <synonym>Botrytis cinerea</synonym>\r
1852                                                       <rank>species</rank>\r
1853                                                     </taxonomy>\r
1854                                                   </clade>\r
1855                                                   <clade>\r
1856                                                     <taxonomy>\r
1857                                                       <id provider="uniprot">5180</id>\r
1858                                                       <code>SCLSC</code>\r
1859                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>\r
1860                                                       <common_name>White mold</common_name>\r
1861                                                       <synonym>Whetzelinia sclerotiorum</synonym>\r
1862                                                       <rank>species</rank>\r
1863                                                     </taxonomy>\r
1864                                                   </clade>\r
1865                                                 </clade>\r
1866                                                 <clade>\r
1867                                                   <name>OIDMAI</name>\r
1868                                                   <taxonomy>\r
1869                                                     <id provider="uniprot">78148</id>\r
1870                                                     <scientific_name>Oidiodendron maius</scientific_name>\r
1871                                                     <rank>species</rank>\r
1872                                                   </taxonomy>\r
1873                                                 </clade>\r
1874                                               </clade>\r
1875                                             </clade>\r
1876                                             <clade>\r
1877                                               <taxonomy>\r
1878                                                 <id provider="uniprot">388435</id>\r
1879                                                 <scientific_name>Lecanoromycetidae</scientific_name>\r
1880                                                 <rank>subclass</rank>\r
1881                                               </taxonomy>\r
1882                                               <clade>\r
1883                                                 <name>CLAGRA</name>\r
1884                                                 <taxonomy>\r
1885                                                   <id provider="uniprot">27339</id>\r
1886                                                   <scientific_name>Cladonia grayi</scientific_name>\r
1887                                                   <synonym>Cladonia grayi Merr</synonym>\r
1888                                                   <rank>species</rank>\r
1889                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>\r
1890                                                 </taxonomy>\r
1891                                               </clade>\r
1892                                               <clade>\r
1893                                                 <name>XANPAR</name>\r
1894                                                 <taxonomy>\r
1895                                                   <id provider="uniprot">107463</id>\r
1896                                                   <scientific_name>Xanthoria parietina</scientific_name>\r
1897                                                   <rank>species</rank>\r
1898                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>\r
1899                                                 </taxonomy>\r
1900                                               </clade>\r
1901                                             </clade>\r
1902                                           </clade>\r
1903                                           <clade>\r
1904                                             <taxonomy>\r
1905                                               <id provider="uniprot">147541</id>\r
1906                                               <scientific_name>Dothideomycetes</scientific_name>\r
1907                                               <rank>class</rank>\r
1908                                             </taxonomy>\r
1909                                             <reference doi="10.3114/sim.2009.64.01">\r
1910                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>\r
1911                                             </reference>\r
1912                                             <clade>\r
1913                                               <taxonomy>\r
1914                                                 <id provider="uniprot">134362</id>\r
1915                                                 <scientific_name>Capnodiales</scientific_name>\r
1916                                                 <rank>order</rank>\r
1917                                               </taxonomy>\r
1918                                               <clade>\r
1919                                                 <taxonomy>\r
1920                                                   <id provider="uniprot">41254</id>\r
1921                                                   <scientific_name>Mycosphaerella</scientific_name>\r
1922                                                   <rank>genus</rank>\r
1923                                                 </taxonomy>\r
1924                                                 <clade>\r
1925                                                   <name>MYCFI</name>\r
1926                                                   <taxonomy>\r
1927                                                     <id provider="uniprot">83344</id>\r
1928                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>\r
1929                                                     <rank>species</rank>\r
1930                                                   </taxonomy>\r
1931                                                 </clade>\r
1932                                                 <clade>\r
1933                                                   <name>MYCPOP</name>\r
1934                                                   <taxonomy>\r
1935                                                     <id provider="uniprot">85929</id>\r
1936                                                     <scientific_name>Mycosphaerella populorum</scientific_name>\r
1937                                                     <synonym>Septoria musiva</synonym>\r
1938                                                     <rank>species</rank>\r
1939                                                   </taxonomy>\r
1940                                                 </clade>\r
1941                                               </clade>\r
1942                                               <clade>\r
1943                                                 <name>BAUCOM</name>\r
1944                                                 <taxonomy>\r
1945                                                   <id provider="uniprot">430998</id>\r
1946                                                   <scientific_name>Baudoinia compniacensis</scientific_name>\r
1947                                                   <rank>species</rank>\r
1948                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>\r
1949                                                 </taxonomy>\r
1950                                               </clade>\r
1951                                             </clade>\r
1952                                             <clade>\r
1953                                               <taxonomy>\r
1954                                                 <id provider="uniprot">715340</id>\r
1955                                                 <scientific_name>Pleosporineae</scientific_name>\r
1956                                                 <rank>suborder</rank>\r
1957                                               </taxonomy>\r
1958                                               <clade>\r
1959                                                 <taxonomy>\r
1960                                                   <id provider="uniprot">28556</id>\r
1961                                                   <scientific_name>Pleosporaceae</scientific_name>\r
1962                                                   <rank>family</rank>\r
1963                                                 </taxonomy>\r
1964                                                 <clade>\r
1965                                                   <name>Cochliobolus &amp; Setosphaeria</name>\r
1966                                                   <clade>\r
1967                                                     <taxonomy>\r
1968                                                       <id provider="uniprot">5015</id>\r
1969                                                       <scientific_name>Cochliobolus</scientific_name>\r
1970                                                       <rank>genus</rank>\r
1971                                                     </taxonomy>\r
1972                                                     <clade>\r
1973                                                       <taxonomy>\r
1974                                                         <id provider="uniprot">5016</id>\r
1975                                                         <code>COCHE</code>\r
1976                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>\r
1977                                                         <synonym>Drechslera maydis</synonym>\r
1978                                                         <rank>species</rank>\r
1979                                                       </taxonomy>\r
1980                                                     </clade>\r
1981                                                     <clade>\r
1982                                                       <taxonomy>\r
1983                                                         <id provider="uniprot">45130</id>\r
1984                                                         <code>COCSA</code>\r
1985                                                         <scientific_name>Cochliobolus sativus</scientific_name>\r
1986                                                         <synonym>Bipolaris sorokiniana</synonym>\r
1987                                                         <rank>species</rank>\r
1988                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>\r
1989                                                       </taxonomy>\r
1990                                                     </clade>\r
1991                                                   </clade>\r
1992                                                   <clade>\r
1993                                                     <taxonomy>\r
1994                                                       <id provider="uniprot">93612</id>\r
1995                                                       <code>SETTU</code>\r
1996                                                       <scientific_name>Setosphaeria turcica</scientific_name>\r
1997                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>\r
1998                                                       <common_name>Northern corn leaf blight disease fungus</common_name>\r
1999                                                       <synonym>Exserohilum turcicum</synonym>\r
2000                                                       <synonym>Helminthosporium turcicum</synonym>\r
2001                                                       <rank>species</rank>\r
2002                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>\r
2003                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>\r
2004                                                     </taxonomy>\r
2005                                                   </clade>\r
2006                                                 </clade>\r
2007                                                 <clade>\r
2008                                                   <taxonomy>\r
2009                                                     <id provider="uniprot">426418</id>\r
2010                                                     <code>PYRTR</code>\r
2011                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>\r
2012                                                     <common_name>Wheat tan spot fungus</common_name>\r
2013                                                     <synonym>Drechslera tritici-repentis</synonym>\r
2014                                                   </taxonomy>\r
2015                                                 </clade>\r
2016                                               </clade>\r
2017                                               <clade>\r
2018                                                 <taxonomy>\r
2019                                                   <id provider="uniprot">13684</id>\r
2020                                                   <code>PHANO</code>\r
2021                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>\r
2022                                                   <common_name>Glume blotch fungus</common_name>\r
2023                                                   <synonym>Septoria nodorum</synonym>\r
2024                                                   <rank>species</rank>\r
2025                                                 </taxonomy>\r
2026                                               </clade>\r
2027                                             </clade>\r
2028                                           </clade>\r
2029                                         </clade>\r
2030                                         <clade>\r
2031                                           <taxonomy>\r
2032                                             <id provider="uniprot">28568</id>\r
2033                                             <scientific_name>Trichocomaceae</scientific_name>\r
2034                                             <rank>family</rank>\r
2035                                           </taxonomy>\r
2036                                           <clade>\r
2037                                             <name>Neosartorya_Emericella</name>\r
2038                                             <clade>\r
2039                                               <taxonomy>\r
2040                                                 <id provider="eol">195546</id>\r
2041                                                 <code>EMENI</code>\r
2042                                                 <scientific_name>Emericella nidulans</scientific_name>\r
2043                                                 <authority>Vuill. 1927</authority>\r
2044                                                 <synonym>Aspergillus nidulans</synonym>\r
2045                                                 <rank>species</rank>\r
2046                                               </taxonomy>\r
2047                                             </clade>\r
2048                                             <clade>\r
2049                                               <taxonomy>\r
2050                                                 <id provider="uniprot">331117</id>\r
2051                                                 <code>NEOFI</code>\r
2052                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>\r
2053                                                 <synonym>Aspergillus fischerianus</synonym>\r
2054                                               </taxonomy>\r
2055                                             </clade>\r
2056                                           </clade>\r
2057                                           <clade>\r
2058                                             <taxonomy>\r
2059                                               <id provider="uniprot">5052</id>\r
2060                                               <scientific_name>Aspergillus</scientific_name>\r
2061                                               <rank>genus</rank>\r
2062                                             </taxonomy>\r
2063                                             <clade>\r
2064                                               <taxonomy>\r
2065                                                 <id provider="uniprot">5059</id>\r
2066                                                 <code>ASPFL</code>\r
2067                                                 <scientific_name>Aspergillus flavus</scientific_name>\r
2068                                                 <rank>species</rank>\r
2069                                               </taxonomy>\r
2070                                             </clade>\r
2071                                             <clade>\r
2072                                               <taxonomy>\r
2073                                                 <id provider="uniprot">5061</id>\r
2074                                                 <code>ASPNG</code>\r
2075                                                 <scientific_name>Aspergillus niger</scientific_name>\r
2076                                                 <rank>species</rank>\r
2077                                               </taxonomy>\r
2078                                             </clade>\r
2079                                           </clade>\r
2080                                         </clade>\r
2081                                       </clade>\r
2082                                       <clade>\r
2083                                         <taxonomy>\r
2084                                           <id provider="uniprot">33183</id>\r
2085                                           <scientific_name>Onygenales</scientific_name>\r
2086                                           <rank>order</rank>\r
2087                                         </taxonomy>\r
2088                                         <clade>\r
2089                                           <taxonomy>\r
2090                                             <id provider="uniprot">5501</id>\r
2091                                             <code>COCIM</code>\r
2092                                             <scientific_name>Coccidioides immitis</scientific_name>\r
2093                                             <common_name>Valley fever fungus</common_name>\r
2094                                             <rank>species</rank>\r
2095                                           </taxonomy>\r
2096                                         </clade>\r
2097                                         <clade>\r
2098                                           <taxonomy>\r
2099                                             <id provider="uniprot">336963</id>\r
2100                                             <code>UNCRE</code>\r
2101                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>\r
2102                                           </taxonomy>\r
2103                                         </clade>\r
2104                                       </clade>\r
2105                                     </clade>\r
2106                                     <clade>\r
2107                                       <taxonomy>\r
2108                                         <id provider="uniprot">656061</id>\r
2109                                         <code>TUBMM</code>\r
2110                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>\r
2111                                         <common_name>Perigord black truffle</common_name>\r
2112                                         <synonym>Tuber melanosporum Mel28</synonym>\r
2113                                         <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>\r
2114                                       </taxonomy>\r
2115                                     </clade>\r
2116                                   </clade>\r
2117                                   <clade>\r
2118                                     <taxonomy>\r
2119                                       <id provider="uniprot">4892</id>\r
2120                                       <scientific_name>Saccharomycetales</scientific_name>\r
2121                                       <common_name>budding yeasts</common_name>\r
2122                                       <rank>order</rank>\r
2123                                     </taxonomy>\r
2124                                     <clade>\r
2125                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>\r
2126                                       <clade>\r
2127                                         <taxonomy>\r
2128                                           <id provider="uniprot">4893</id>\r
2129                                           <scientific_name>Saccharomycetaceae</scientific_name>\r
2130                                           <rank>family</rank>\r
2131                                         </taxonomy>\r
2132                                         <clade>\r
2133                                           <name>Saccharomyces_Pichia</name>\r
2134                                           <clade>\r
2135                                             <name>Saccharomyces</name>\r
2136                                             <clade>\r
2137                                               <taxonomy>\r
2138                                                 <id provider="uniprot">27288</id>\r
2139                                                 <code>SACCA</code>\r
2140                                                 <scientific_name>Saccharomyces castellii</scientific_name>\r
2141                                                 <common_name>Yeast</common_name>\r
2142                                                 <synonym>Saccharomyces castellii</synonym>\r
2143                                                 <rank>species</rank>\r
2144                                               </taxonomy>\r
2145                                             </clade>\r
2146                                             <clade>\r
2147                                               <taxonomy>\r
2148                                                 <id provider="uniprot">4932</id>\r
2149                                                 <code>YEAST</code>\r
2150                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>\r
2151                                                 <common_name>Baker&apos;s yeast</common_name>\r
2152                                                 <rank>species</rank>\r
2153                                               </taxonomy>\r
2154                                             </clade>\r
2155                                           </clade>\r
2156                                           <clade>\r
2157                                             <taxonomy>\r
2158                                               <id provider="uniprot">4905</id>\r
2159                                               <code>PICAN</code>\r
2160                                               <scientific_name>Pichia angusta</scientific_name>\r
2161                                               <common_name>Yeast</common_name>\r
2162                                               <synonym>Hansenula polymorpha</synonym>\r
2163                                               <rank>species</rank>\r
2164                                             </taxonomy>\r
2165                                           </clade>\r
2166                                         </clade>\r
2167                                         <clade>\r
2168                                           <name>Kluyveromyces &amp; Ashbya</name>\r
2169                                           <clade>\r
2170                                             <name>Kluyveromyces</name>\r
2171                                             <clade>\r
2172                                               <taxonomy>\r
2173                                                 <id provider="uniprot">28985</id>\r
2174                                                 <code>KLULA</code>\r
2175                                                 <scientific_name>Kluyveromyces lactis</scientific_name>\r
2176                                                 <common_name>Yeast</common_name>\r
2177                                                 <synonym>Candida sphaerica</synonym>\r
2178                                                 <rank>species</rank>\r
2179                                               </taxonomy>\r
2180                                             </clade>\r
2181                                             <clade>\r
2182                                               <taxonomy>\r
2183                                                 <id provider="uniprot">4914</id>\r
2184                                                 <code>KLUWA</code>\r
2185                                                 <scientific_name>Kluyveromyces waltii</scientific_name>\r
2186                                                 <common_name>Yeast</common_name>\r
2187                                                 <rank>species</rank>\r
2188                                               </taxonomy>\r
2189                                             </clade>\r
2190                                           </clade>\r
2191                                           <clade>\r
2192                                             <taxonomy>\r
2193                                               <id provider="uniprot">33169</id>\r
2194                                               <code>ASHGO</code>\r
2195                                               <scientific_name>Ashbya gossypii</scientific_name>\r
2196                                               <common_name>Yeast</common_name>\r
2197                                               <synonym>Eremothecium gossypii</synonym>\r
2198                                               <rank>species</rank>\r
2199                                             </taxonomy>\r
2200                                           </clade>\r
2201                                         </clade>\r
2202                                       </clade>\r
2203                                       <clade>\r
2204                                         <name>Candida &amp; Debaryomyces</name>\r
2205                                         <clade>\r
2206                                           <taxonomy>\r
2207                                             <id provider="uniprot">5475</id>\r
2208                                             <scientific_name>Candida</scientific_name>\r
2209                                             <rank>genus</rank>\r
2210                                           </taxonomy>\r
2211                                           <clade>\r
2212                                             <taxonomy>\r
2213                                               <id provider="uniprot">5476</id>\r
2214                                               <code>CANAL</code>\r
2215                                               <scientific_name>Candida albicans</scientific_name>\r
2216                                               <common_name>Yeast</common_name>\r
2217                                               <rank>species</rank>\r
2218                                             </taxonomy>\r
2219                                           </clade>\r
2220                                           <clade>\r
2221                                             <taxonomy>\r
2222                                               <id provider="uniprot">5482</id>\r
2223                                               <code>CANTR</code>\r
2224                                               <scientific_name>Candida tropicalis</scientific_name>\r
2225                                               <common_name>Yeast</common_name>\r
2226                                               <rank>species</rank>\r
2227                                             </taxonomy>\r
2228                                           </clade>\r
2229                                         </clade>\r
2230                                         <clade>\r
2231                                           <taxonomy>\r
2232                                             <id provider="uniprot">4959</id>\r
2233                                             <code>DEBHA</code>\r
2234                                             <scientific_name>Debaryomyces hansenii</scientific_name>\r
2235                                             <common_name>Yeast</common_name>\r
2236                                             <synonym>Torulaspora hansenii</synonym>\r
2237                                             <rank>species</rank>\r
2238                                           </taxonomy>\r
2239                                         </clade>\r
2240                                       </clade>\r
2241                                     </clade>\r
2242                                     <clade>\r
2243                                       <taxonomy>\r
2244                                         <id provider="uniprot">4952</id>\r
2245                                         <code>YARLI</code>\r
2246                                         <scientific_name>Yarrowia lipolytica</scientific_name>\r
2247                                         <synonym>Candida lipolytica</synonym>\r
2248                                         <rank>species</rank>\r
2249                                       </taxonomy>\r
2250                                     </clade>\r
2251                                   </clade>\r
2252                                 </clade>\r
2253                                 <clade>\r
2254                                   <taxonomy>\r
2255                                     <id provider="uniprot">451866</id>\r
2256                                     <scientific_name>Taphrinomycotina</scientific_name>\r
2257                                     <rank>subphylum</rank>\r
2258                                   </taxonomy>\r
2259                                   <clade>\r
2260                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>\r
2261                                     <clade>\r
2262                                       <taxonomy>\r
2263                                         <id provider="uniprot">4895</id>\r
2264                                         <scientific_name>Schizosaccharomyces</scientific_name>\r
2265                                         <rank>genus</rank>\r
2266                                       </taxonomy>\r
2267                                       <clade>\r
2268                                         <taxonomy>\r
2269                                           <id provider="uniprot">4897</id>\r
2270                                           <code>SCHJP</code>\r
2271                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>\r
2272                                           <common_name>Fission yeast</common_name>\r
2273                                           <rank>species</rank>\r
2274                                         </taxonomy>\r
2275                                       </clade>\r
2276                                       <clade>\r
2277                                         <taxonomy>\r
2278                                           <id provider="uniprot">4896</id>\r
2279                                           <code>SCHPO</code>\r
2280                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>\r
2281                                           <common_name>Fission yeast</common_name>\r
2282                                           <rank>species</rank>\r
2283                                         </taxonomy>\r
2284                                       </clade>\r
2285                                     </clade>\r
2286                                     <clade>\r
2287                                       <taxonomy>\r
2288                                         <id provider="uniprot">4754</id>\r
2289                                         <code>PNECA</code>\r
2290                                         <scientific_name>Pneumocystis carinii</scientific_name>\r
2291                                         <rank>species</rank>\r
2292                                       </taxonomy>\r
2293                                     </clade>\r
2294                                   </clade>\r
2295                                   <clade>\r
2296                                     <name>SAICOM</name>\r
2297                                     <taxonomy>\r
2298                                       <id provider="uniprot">5606</id>\r
2299                                       <scientific_name>Saitoella complicata</scientific_name>\r
2300                                       <rank>species</rank>\r
2301                                     </taxonomy>\r
2302                                   </clade>\r
2303                                 </clade>\r
2304                               </clade>\r
2305                               <clade>\r
2306                                 <taxonomy>\r
2307                                   <id provider="uniprot">5204</id>\r
2308                                   <scientific_name>Basidiomycota</scientific_name>\r
2309                                   <rank>phylum</rank>\r
2310                                 </taxonomy>\r
2311                                 <clade>\r
2312                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>\r
2313                                   <clade>\r
2314                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>\r
2315                                     <clade>\r
2316                                       <taxonomy>\r
2317                                         <id provider="uniprot">5302</id>\r
2318                                         <scientific_name>Agaricomycotina</scientific_name>\r
2319                                       </taxonomy>\r
2320                                       <clade>\r
2321                                         <taxonomy>\r
2322                                           <id provider="uniprot">155619</id>\r
2323                                           <scientific_name>Homobasidiomycetes</scientific_name>\r
2324                                           <rank>class</rank>\r
2325                                         </taxonomy>\r
2326                                         <reference doi="10.1098/rspb.2002.2123">\r
2327                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>\r
2328                                         </reference>\r
2329                                         <clade>\r
2330                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>\r
2331                                           <clade>\r
2332                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>\r
2333                                             <clade>\r
2334                                               <taxonomy>\r
2335                                                 <id provider="uniprot">452333</id>\r
2336                                                 <scientific_name>Agaricomycetidae</scientific_name>\r
2337                                                 <rank>subclass</rank>\r
2338                                               </taxonomy>\r
2339                                               <clade>\r
2340                                                 <name>Agaricales &amp; Boletales</name>\r
2341                                                 <clade>\r
2342                                                   <taxonomy>\r
2343                                                     <id provider="uniprot">5338</id>\r
2344                                                     <scientific_name>Agaricales</scientific_name>\r
2345                                                     <rank>order</rank>\r
2346                                                   </taxonomy>\r
2347                                                   <clade>\r
2348                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>\r
2349                                                     <clade>\r
2350                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>\r
2351                                                       <clade>\r
2352                                                         <name>Agaricus &amp; Coprinopsis</name>\r
2353                                                         <clade>\r
2354                                                           <name>AGABB</name>\r
2355                                                           <taxonomy>\r
2356                                                             <id provider="uniprot">192524</id>\r
2357                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>\r
2358                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>\r
2359                                                           </taxonomy>\r
2360                                                         </clade>\r
2361                                                         <clade>\r
2362                                                           <taxonomy>\r
2363                                                             <id provider="uniprot">5346</id>\r
2364                                                             <code>COPCI</code>\r
2365                                                             <scientific_name>Coprinopsis cinerea</scientific_name>\r
2366                                                             <common_name>Inky cap fungus</common_name>\r
2367                                                             <synonym>Hormographiella aspergillata</synonym>\r
2368                                                             <rank>species</rank>\r
2369                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>\r
2370                                                           </taxonomy>\r
2371                                                         </clade>\r
2372                                                       </clade>\r
2373                                                       <clade>\r
2374                                                         <taxonomy>\r
2375                                                           <id provider="uniprot">29883</id>\r
2376                                                           <code>LACBI</code>\r
2377                                                           <scientific_name>Laccaria bicolor</scientific_name>\r
2378                                                           <common_name>Bicoloured deceiver</common_name>\r
2379                                                           <synonym>Laccaria laccata var. bicolor</synonym>\r
2380                                                           <rank>species</rank>\r
2381                                                           <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>\r
2382                                                         </taxonomy>\r
2383                                                       </clade>\r
2384                                                     </clade>\r
2385                                                     <clade>\r
2386                                                       <name>GYMLUX</name>\r
2387                                                       <taxonomy>\r
2388                                                         <id provider="uniprot">206324</id>\r
2389                                                         <scientific_name>Gymnopus luxurians</scientific_name>\r
2390                                                         <rank>species</rank>\r
2391                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>\r
2392                                                       </taxonomy>\r
2393                                                     </clade>\r
2394                                                   </clade>\r
2395                                                   <clade>\r
2396                                                     <taxonomy>\r
2397                                                       <id provider="uniprot">5322</id>\r
2398                                                       <code>PLEOS</code>\r
2399                                                       <scientific_name>Pleurotus ostreatus</scientific_name>\r
2400                                                       <common_name>Oyster mushroom</common_name>\r
2401                                                       <synonym>White-rot fungus</synonym>\r
2402                                                       <rank>species</rank>\r
2403                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>\r
2404                                                     </taxonomy>\r
2405                                                   </clade>\r
2406                                                 </clade>\r
2407                                                 <clade>\r
2408                                                   <taxonomy>\r
2409                                                     <id provider="uniprot">68889</id>\r
2410                                                     <scientific_name>Boletales</scientific_name>\r
2411                                                     <synonym>Melanogastrales</synonym>\r
2412                                                     <synonym>Sclerodermatales</synonym>\r
2413                                                     <rank>order</rank>\r
2414                                                   </taxonomy>\r
2415                                                   <clade>\r
2416                                                     <taxonomy>\r
2417                                                       <id provider="uniprot">227334</id>\r
2418                                                       <scientific_name>Coniophorineae</scientific_name>\r
2419                                                       <rank>suborder</rank>\r
2420                                                     </taxonomy>\r
2421                                                     <clade>\r
2422                                                       <name>CONPUT</name>\r
2423                                                       <taxonomy>\r
2424                                                         <id provider="uniprot">80637</id>\r
2425                                                         <scientific_name>Coniophora puteana</scientific_name>\r
2426                                                         <authority>Schum. ex Fries</authority>\r
2427                                                         <common_name>cellar fungus</common_name>\r
2428                                                         <rank>species</rank>\r
2429                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>\r
2430                                                       </taxonomy>\r
2431                                                     </clade>\r
2432                                                     <clade>\r
2433                                                       <name>SERLAC</name>\r
2434                                                       <taxonomy>\r
2435                                                         <id provider="uniprot">85982</id>\r
2436                                                         <scientific_name>Serpula lacrymans</scientific_name>\r
2437                                                         <common_name>dry rot fungus</common_name>\r
2438                                                         <rank>species</rank>\r
2439                                                         <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>\r
2440                                                       </taxonomy>\r
2441                                                     </clade>\r
2442                                                   </clade>\r
2443                                                   <clade>\r
2444                                                     <name>HYDPIN</name>\r
2445                                                     <taxonomy>\r
2446                                                       <id provider="uniprot">388859</id>\r
2447                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>\r
2448                                                       <common_name>Spiny dry rot fungus</common_name>\r
2449                                                       <rank>species</rank>\r
2450                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>\r
2451                                                     </taxonomy>\r
2452                                                   </clade>\r
2453                                                 </clade>\r
2454                                               </clade>\r
2455                                               <clade>\r
2456                                                 <name>JAAARG</name>\r
2457                                                 <taxonomy>\r
2458                                                   <id provider="uniprot">202697</id>\r
2459                                                   <scientific_name>Jaapia argillacea</scientific_name>\r
2460                                                   <rank>species</rank>\r
2461                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>\r
2462                                                 </taxonomy>\r
2463                                               </clade>\r
2464                                             </clade>\r
2465                                             <clade>\r
2466                                               <taxonomy>\r
2467                                                 <id provider="uniprot">104355</id>\r
2468                                                 <code>GLOTR</code>\r
2469                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>\r
2470                                                 <common_name>Brown rot fungus</common_name>\r
2471                                                 <rank>species</rank>\r
2472                                                 <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>\r
2473                                               </taxonomy>\r
2474                                             </clade>\r
2475                                           </clade>\r
2476                                           <clade>\r
2477                                             <taxonomy>\r
2478                                               <id provider="uniprot">5303</id>\r
2479                                               <scientific_name>Aphyllophorales</scientific_name>\r
2480                                               <authority>Gäum. (1926)</authority>\r
2481                                               <common_name>Shelf Fungi</common_name>\r
2482                                               <synonym>Polyporales</synonym>\r
2483                                               <rank>order</rank>\r
2484                                             </taxonomy>\r
2485                                             <clade>\r
2486                                               <taxonomy>\r
2487                                                 <id provider="uniprot">83233</id>\r
2488                                                 <scientific_name>Coriolaceae</scientific_name>\r
2489                                                 <rank>family</rank>\r
2490                                               </taxonomy>\r
2491                                               <reference doi="10.1017/S1477200005001623">\r
2492                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>\r
2493                                               </reference>\r
2494                                               <reference>\r
2495                                               </reference>\r
2496                                               <reference>\r
2497                                               </reference>\r
2498                                               <clade>\r
2499                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>\r
2500                                                 <clade>\r
2501                                                   <name>Antrodia clade</name>\r
2502                                                   <taxonomy>\r
2503                                                     <common_name>Antrodia clade</common_name>\r
2504                                                   </taxonomy>\r
2505                                                   <clade>\r
2506                                                     <name>FOMPIN</name>\r
2507                                                     <taxonomy>\r
2508                                                       <id provider="uniprot">40483</id>\r
2509                                                       <scientific_name>Fomitopsis pinicola</scientific_name>\r
2510                                                       <authority>P. Karst. 1881</authority>\r
2511                                                       <common_name>Red banded polypore</common_name>\r
2512                                                       <synonym>Fomes pinicola</synonym>\r
2513                                                       <rank>species</rank>\r
2514                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>\r
2515                                                     </taxonomy>\r
2516                                                   </clade>\r
2517                                                   <clade>\r
2518                                                     <name>POSPL</name>\r
2519                                                     <taxonomy>\r
2520                                                       <id provider="uniprot">104341</id>\r
2521                                                       <scientific_name>Postia placenta</scientific_name>\r
2522                                                       <rank>species</rank>\r
2523                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>\r
2524                                                     </taxonomy>\r
2525                                                   </clade>\r
2526                                                 </clade>\r
2527                                                 <clade>\r
2528                                                   <name>core polyporoid clade</name>\r
2529                                                   <taxonomy>\r
2530                                                     <common_name>core polyporoid clade</common_name>\r
2531                                                   </taxonomy>\r
2532                                                   <clade>\r
2533                                                     <taxonomy>\r
2534                                                       <id provider="uniprot">5325</id>\r
2535                                                       <code>TRAVE</code>\r
2536                                                       <scientific_name>Trametes versicolor</scientific_name>\r
2537                                                       <authority>(L.) Lloyd 1921</authority>\r
2538                                                       <common_name>White-rot fungus</common_name>\r
2539                                                       <synonym>Coriolus versicolor</synonym>\r
2540                                                       <synonym>Bjerkandera versicolor</synonym>\r
2541                                                       <rank>species</rank>\r
2542                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>\r
2543                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>\r
2544                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>\r
2545                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>\r
2546                                                     </taxonomy>\r
2547                                                   </clade>\r
2548                                                   <clade>\r
2549                                                     <name>WOLCOC</name>\r
2550                                                     <taxonomy>\r
2551                                                       <id provider="uniprot">81056</id>\r
2552                                                       <scientific_name>Wolfiporia cocos</scientific_name>\r
2553                                                       <rank>species</rank>\r
2554                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>\r
2555                                                     </taxonomy>\r
2556                                                   </clade>\r
2557                                                 </clade>\r
2558                                               </clade>\r
2559                                               <clade>\r
2560                                                 <taxonomy>\r
2561                                                   <id provider="uniprot">42742</id>\r
2562                                                   <code>CERSU</code>\r
2563                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>\r
2564                                                   <rank>species</rank>\r
2565                                                 </taxonomy>\r
2566                                               </clade>\r
2567                                             </clade>\r
2568                                             <clade>\r
2569                                               <name>DICSQU</name>\r
2570                                               <taxonomy>\r
2571                                                 <id provider="uniprot">114155</id>\r
2572                                                 <scientific_name>Dichomitus squalens</scientific_name>\r
2573                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>\r
2574                                                 <common_name>Red rot</common_name>\r
2575                                                 <synonym>Polyporus anceps</synonym>\r
2576                                                 <rank>species</rank>\r
2577                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>\r
2578                                               </taxonomy>\r
2579                                             </clade>\r
2580                                           </clade>\r
2581                                         </clade>\r
2582                                         <clade>\r
2583                                           <taxonomy>\r
2584                                             <id provider="uniprot">13563</id>\r
2585                                             <code>HETAN</code>\r
2586                                             <scientific_name>Heterobasidion annosum</scientific_name>\r
2587                                             <common_name>Root rot fungus</common_name>\r
2588                                             <rank>species</rank>\r
2589                                           </taxonomy>\r
2590                                         </clade>\r
2591                                       </clade>\r
2592                                       <clade>\r
2593                                         <taxonomy>\r
2594                                           <id provider="uniprot">5215</id>\r
2595                                           <scientific_name>Tremellaceae</scientific_name>\r
2596                                           <rank>family</rank>\r
2597                                         </taxonomy>\r
2598                                         <clade>\r
2599                                           <taxonomy>\r
2600                                             <id provider="uniprot">5207</id>\r
2601                                             <code>CRYNE</code>\r
2602                                             <scientific_name>Cryptococcus neoformans</scientific_name>\r
2603                                             <synonym>Filobasidiella neoformans</synonym>\r
2604                                             <rank>species</rank>\r
2605                                           </taxonomy>\r
2606                                         </clade>\r
2607                                         <clade>\r
2608                                           <taxonomy>\r
2609                                             <id provider="eol">1029985</id>\r
2610                                             <code>TREME</code>\r
2611                                             <scientific_name>Tremella mesenterica</scientific_name>\r
2612                                             <authority>Pers. 1800</authority>\r
2613                                             <common_name>Jelly fungus</common_name>\r
2614                                             <synonym>Yellow Brain</synonym>\r
2615                                             <synonym>Tremella lutescens</synonym>\r
2616                                             <rank>species</rank>\r
2617                                           </taxonomy>\r
2618                                         </clade>\r
2619                                       </clade>\r
2620                                     </clade>\r
2621                                     <clade>\r
2622                                       <taxonomy>\r
2623                                         <id provider="uniprot">452284</id>\r
2624                                         <scientific_name>Ustilaginomycotina</scientific_name>\r
2625                                         <rank>subphylum</rank>\r
2626                                       </taxonomy>\r
2627                                       <clade>\r
2628                                         <taxonomy>\r
2629                                           <id provider="uniprot">425265</id>\r
2630                                           <code>MALGO</code>\r
2631                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>\r
2632                                           <common_name>Dandruff-associated fungus</common_name>\r
2633                                         </taxonomy>\r
2634                                       </clade>\r
2635                                       <clade>\r
2636                                         <taxonomy>\r
2637                                           <id provider="uniprot">5270</id>\r
2638                                           <code>USTMA</code>\r
2639                                           <scientific_name>Ustilago maydis</scientific_name>\r
2640                                           <common_name>Smut fungus</common_name>\r
2641                                           <rank>species</rank>\r
2642                                         </taxonomy>\r
2643                                       </clade>\r
2644                                     </clade>\r
2645                                   </clade>\r
2646                                   <clade>\r
2647                                     <taxonomy>\r
2648                                       <id provider="uniprot">29000</id>\r
2649                                       <scientific_name>Pucciniomycotina</scientific_name>\r
2650                                       <rank>subphylum</rank>\r
2651                                     </taxonomy>\r
2652                                     <clade>\r
2653                                       <taxonomy>\r
2654                                         <id provider="uniprot">5258</id>\r
2655                                         <scientific_name>Pucciniales</scientific_name>\r
2656                                         <common_name>rusts</common_name>\r
2657                                         <rank>order</rank>\r
2658                                       </taxonomy>\r
2659                                       <clade>\r
2660                                         <taxonomy>\r
2661                                           <id provider="eol">156696</id>\r
2662                                           <code>MELLP</code>\r
2663                                           <scientific_name>Melampsora laricis-populina</scientific_name>\r
2664                                           <authority>Kleb. 1902</authority>\r
2665                                           <synonym>Melampsora larici-populina</synonym>\r
2666                                           <synonym>Melampsora laricipopulina</synonym>\r
2667                                           <rank>species</rank>\r
2668                                         </taxonomy>\r
2669                                       </clade>\r
2670                                       <clade>\r
2671                                         <taxonomy>\r
2672                                           <id provider="eol">1029947</id>\r
2673                                           <code>PUCGR</code>\r
2674                                           <scientific_name>Puccinia graminis</scientific_name>\r
2675                                           <authority>Pers. 1794</authority>\r
2676                                           <common_name>Black stem rust fungus</common_name>\r
2677                                           <synonym>Wheat rust</synonym>\r
2678                                           <rank>species</rank>\r
2679                                         </taxonomy>\r
2680                                       </clade>\r
2681                                     </clade>\r
2682                                     <clade>\r
2683                                       <taxonomy>\r
2684                                         <id provider="uniprot">89013</id>\r
2685                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>\r
2686                                       </taxonomy>\r
2687                                       <clade>\r
2688                                         <taxonomy>\r
2689                                           <id provider="uniprot">29898</id>\r
2690                                           <code>RHOGR</code>\r
2691                                           <scientific_name>Rhodotorula graminis</scientific_name>\r
2692                                           <common_name>Yeast</common_name>\r
2693                                           <rank>species</rank>\r
2694                                         </taxonomy>\r
2695                                       </clade>\r
2696                                       <clade>\r
2697                                         <name>SPORO</name>\r
2698                                         <taxonomy>\r
2699                                           <id provider="eol">1013696</id>\r
2700                                           <scientific_name>Sporobolomyces roseus</scientific_name>\r
2701                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>\r
2702                                           <rank>species</rank>\r
2703                                         </taxonomy>\r
2704                                       </clade>\r
2705                                     </clade>\r
2706                                   </clade>\r
2707                                 </clade>\r
2708                                 <clade>\r
2709                                   <taxonomy>\r
2710                                     <id provider="uniprot">148960</id>\r
2711                                     <code>WALSE</code>\r
2712                                     <scientific_name>Wallemia sebi</scientific_name>\r
2713                                     <rank>species</rank>\r
2714                                   </taxonomy>\r
2715                                 </clade>\r
2716                               </clade>\r
2717                             </clade>\r
2718                             <clade>\r
2719                               <taxonomy>\r
2720                                 <id provider="uniprot">451507</id>\r
2721                                 <scientific_name>Mucoromycotina</scientific_name>\r
2722                                 <rank>subphylum</rank>\r
2723                               </taxonomy>\r
2724                               <clade>\r
2725                                 <taxonomy>\r
2726                                   <id provider="uniprot">34489</id>\r
2727                                   <scientific_name>Mucoraceae</scientific_name>\r
2728                                   <rank>family</rank>\r
2729                                 </taxonomy>\r
2730                                 <clade>\r
2731                                   <taxonomy>\r
2732                                     <id provider="uniprot">36080</id>\r
2733                                     <code>MUCCI</code>\r
2734                                     <scientific_name>Mucor circinelloides</scientific_name>\r
2735                                     <synonym>Mucor griseo-roseus</synonym>\r
2736                                     <rank>species</rank>\r
2737                                   </taxonomy>\r
2738                                 </clade>\r
2739                                 <clade>\r
2740                                   <taxonomy>\r
2741                                     <id provider="uniprot">64495</id>\r
2742                                     <code>RHIOR</code>\r
2743                                     <scientific_name>Rhizopus oryzae</scientific_name>\r
2744                                     <synonym>Rhizopus delemar</synonym>\r
2745                                     <rank>species</rank>\r
2746                                   </taxonomy>\r
2747                                 </clade>\r
2748                               </clade>\r
2749                               <clade>\r
2750                                 <name>MORVER</name>\r
2751                                 <taxonomy>\r
2752                                   <id provider="uniprot">78898</id>\r
2753                                   <scientific_name>Mortierella verticillata</scientific_name>\r
2754                                   <rank>species</rank>\r
2755                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>\r
2756                                 </taxonomy>\r
2757                               </clade>\r
2758                             </clade>\r
2759                           </clade>\r
2760                           <clade>\r
2761                             <name>COEREV</name>\r
2762                             <taxonomy>\r
2763                               <id provider="uniprot">61392</id>\r
2764                               <scientific_name>Coemansia reversa</scientific_name>\r
2765                               <rank>species</rank>\r
2766                             </taxonomy>\r
2767                           </clade>\r
2768                         </clade>\r
2769                         <clade>\r
2770                           <taxonomy>\r
2771                             <id provider="uniprot">28583</id>\r
2772                             <code>ALLMA</code>\r
2773                             <scientific_name>Allomyces macrogynus</scientific_name>\r
2774                             <rank>species</rank>\r
2775                           </taxonomy>\r
2776                         </clade>\r
2777                       </clade>\r
2778                       <clade>\r
2779                         <taxonomy>\r
2780                           <id provider="uniprot">4761</id>\r
2781                           <scientific_name>Chytridiomycota</scientific_name>\r
2782                           <common_name>chytrids</common_name>\r
2783                           <synonym>Mastigomycotina</synonym>\r
2784                           <rank>phylum</rank>\r
2785                         </taxonomy>\r
2786                         <clade>\r
2787                           <taxonomy>\r
2788                             <id provider="uniprot">451435</id>\r
2789                             <scientific_name>Chytridiomycetes</scientific_name>\r
2790                             <rank>class</rank>\r
2791                           </taxonomy>\r
2792                           <clade>\r
2793                             <taxonomy>\r
2794                               <id provider="uniprot">109871</id>\r
2795                               <code>BATDE</code>\r
2796                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>\r
2797                               <common_name>Frog chytrid fungus</common_name>\r
2798                               <rank>species</rank>\r
2799                             </taxonomy>\r
2800                           </clade>\r
2801                           <clade>\r
2802                             <taxonomy>\r
2803                               <id provider="uniprot">109760</id>\r
2804                               <code>SPIPN</code>\r
2805                               <scientific_name>Spizellomyces punctatus</scientific_name>\r
2806                               <rank>species</rank>\r
2807                             </taxonomy>\r
2808                           </clade>\r
2809                         </clade>\r
2810                         <clade>\r
2811                           <name>GONPRO</name>\r
2812                           <taxonomy>\r
2813                             <id provider="eol">157984</id>\r
2814                             <scientific_name>Gonapodya prolifera</scientific_name>\r
2815                             <authority>A. Fisch. 1892</authority>\r
2816                             <rank>species</rank>\r
2817                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>\r
2818                           </taxonomy>\r
2819                         </clade>\r
2820                       </clade>\r
2821                     </clade>\r
2822                     <clade>\r
2823                       <name>PIRSPE</name>\r
2824                       <taxonomy>\r
2825                         <id provider="uniprot">73868</id>\r
2826                         <scientific_name>Piromyces sp. E2</scientific_name>\r
2827                         <rank>species</rank>\r
2828                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>\r
2829                       </taxonomy>\r
2830                     </clade>\r
2831                   </clade>\r
2832                   <clade>\r
2833                     <taxonomy>\r
2834                       <id provider="uniprot">6035</id>\r
2835                       <code>ENCCU</code>\r
2836                       <scientific_name>Encephalitozoon cuniculi</scientific_name>\r
2837                       <common_name>Microsporidian parasite</common_name>\r
2838                       <rank>species</rank>\r
2839                     </taxonomy>\r
2840                   </clade>\r
2841                 </clade>\r
2842                 <clade>\r
2843                   <name>Fonticula &amp; Nucleariidae</name>\r
2844                   <reference doi="10.1093/molbev/msp185">\r
2845                   </reference>\r
2846                   <clade>\r
2847                     <name>FONALB</name>\r
2848                     <taxonomy>\r
2849                       <id provider="uniprot">691883</id>\r
2850                       <scientific_name>Fonticula alba</scientific_name>\r
2851                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>\r
2852                       <rank>species</rank>\r
2853                     </taxonomy>\r
2854                   </clade>\r
2855                   <clade>\r
2856                     <name>NUCSIM</name>\r
2857                     <taxonomy>\r
2858                       <id provider="uniprot">154970</id>\r
2859                       <scientific_name>Nuclearia simplex</scientific_name>\r
2860                       <rank>species</rank>\r
2861                     </taxonomy>\r
2862                   </clade>\r
2863                 </clade>\r
2864               </clade>\r
2865             </clade>\r
2866             <clade>\r
2867               <name>THETRA</name>\r
2868               <taxonomy>\r
2869                 <id provider="uniprot">529818</id>\r
2870                 <scientific_name>Thecamonas trahens</scientific_name>\r
2871                 <rank>species</rank>\r
2872               </taxonomy>\r
2873             </clade>\r
2874           </clade>\r
2875           <clade>\r
2876             <name>Amoebozoa</name>\r
2877             <taxonomy>\r
2878               <id provider="uniprot">554915</id>\r
2879               <scientific_name>Amoebozoa</scientific_name>\r
2880             </taxonomy>\r
2881             <clade>\r
2882               <name>Dictyostelium</name>\r
2883               <taxonomy>\r
2884                 <id provider="uniprot">5782</id>\r
2885                 <scientific_name>Dictyostelium</scientific_name>\r
2886                 <rank>genus</rank>\r
2887               </taxonomy>\r
2888               <clade>\r
2889                 <taxonomy>\r
2890                   <id provider="uniprot">44689</id>\r
2891                   <code>DICDI</code>\r
2892                   <scientific_name>Dictyostelium discoideum</scientific_name>\r
2893                   <common_name>Slime mold</common_name>\r
2894                   <rank>species</rank>\r
2895                 </taxonomy>\r
2896               </clade>\r
2897               <clade>\r
2898                 <taxonomy>\r
2899                   <id provider="uniprot">5786</id>\r
2900                   <code>DICPU</code>\r
2901                   <scientific_name>Dictyostelium purpureum</scientific_name>\r
2902                   <common_name>Slime mold</common_name>\r
2903                   <rank>species</rank>\r
2904                 </taxonomy>\r
2905               </clade>\r
2906             </clade>\r
2907             <clade>\r
2908               <taxonomy>\r
2909                 <id provider="uniprot">5759</id>\r
2910                 <code>ENTHI</code>\r
2911                 <scientific_name>Entamoeba histolytica</scientific_name>\r
2912                 <rank>species</rank>\r
2913               </taxonomy>\r
2914             </clade>\r
2915           </clade>\r
2916         </clade>\r
2917         <clade>\r
2918           <name>Bikonta</name>\r
2919           <reference doi="10.1099/ijs.0.63216-0">\r
2920           </reference>\r
2921           <clade>\r
2922             <name>Corticata</name>\r
2923             <clade>\r
2924               <name>Archaeplastida</name>\r
2925               <clade>\r
2926                 <taxonomy>\r
2927                   <id provider="uniprot">33090</id>\r
2928                   <scientific_name>Viridiplantae</scientific_name>\r
2929                   <common_name>green plants</common_name>\r
2930                   <rank>kingdom</rank>\r
2931                 </taxonomy>\r
2932                 <clade>\r
2933                   <taxonomy>\r
2934                     <id provider="uniprot">3193</id>\r
2935                     <scientific_name>Embryophyta</scientific_name>\r
2936                   </taxonomy>\r
2937                   <clade>\r
2938                     <taxonomy>\r
2939                       <id provider="uniprot">58023</id>\r
2940                       <scientific_name>Tracheophyta</scientific_name>\r
2941                     </taxonomy>\r
2942                     <clade>\r
2943                       <taxonomy>\r
2944                         <id provider="uniprot">3398</id>\r
2945                         <scientific_name>Magnoliophyta</scientific_name>\r
2946                         <common_name>flowering plants</common_name>\r
2947                         <synonym>Angiospermae</synonym>\r
2948                       </taxonomy>\r
2949                       <clade>\r
2950                         <taxonomy>\r
2951                           <id provider="uniprot">71240</id>\r
2952                           <scientific_name>eudicotyledons</scientific_name>\r
2953                         </taxonomy>\r
2954                         <clade>\r
2955                           <taxonomy>\r
2956                             <id provider="uniprot">91827</id>\r
2957                             <scientific_name>core eudicotyledons</scientific_name>\r
2958                           </taxonomy>\r
2959                           <clade>\r
2960                             <taxonomy>\r
2961                               <id provider="uniprot">71275</id>\r
2962                               <scientific_name>rosids</scientific_name>\r
2963                               <rank>subclass</rank>\r
2964                             </taxonomy>\r
2965                             <clade>\r
2966                               <name>fabids &amp; malvids</name>\r
2967                               <clade>\r
2968                                 <taxonomy>\r
2969                                   <id provider="uniprot">91835</id>\r
2970                                   <scientific_name>fabids</scientific_name>\r
2971                                 </taxonomy>\r
2972                                 <clade>\r
2973                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>\r
2974                                   <clade>\r
2975                                     <name>Rosales &amp; Cucurbitales</name>\r
2976                                     <clade>\r
2977                                       <taxonomy>\r
2978                                         <id provider="uniprot">3745</id>\r
2979                                         <scientific_name>Rosaceae</scientific_name>\r
2980                                         <rank>family</rank>\r
2981                                       </taxonomy>\r
2982                                       <clade>\r
2983                                         <taxonomy>\r
2984                                           <id provider="uniprot">57918</id>\r
2985                                           <code>FRAVE</code>\r
2986                                           <scientific_name>Fragaria vesca</scientific_name>\r
2987                                           <common_name>Woodland strawberry</common_name>\r
2988                                           <synonym>Fragaria vesca L.</synonym>\r
2989                                           <synonym>European strawberry</synonym>\r
2990                                           <synonym>alpine strawberry</synonym>\r
2991                                           <rank>species</rank>\r
2992                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>\r
2993                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>\r
2994                                         </taxonomy>\r
2995                                       </clade>\r
2996                                       <clade>\r
2997                                         <taxonomy>\r
2998                                           <id provider="uniprot">3760</id>\r
2999                                           <code>PRUPE</code>\r
3000                                           <scientific_name>Prunus persica</scientific_name>\r
3001                                           <common_name>Peach</common_name>\r
3002                                           <synonym>Persica vulgaris</synonym>\r
3003                                           <synonym>Amygdalus persica</synonym>\r
3004                                           <rank>species</rank>\r
3005                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>\r
3006                                         </taxonomy>\r
3007                                       </clade>\r
3008                                     </clade>\r
3009                                     <clade>\r
3010                                       <taxonomy>\r
3011                                         <id provider="uniprot">3659</id>\r
3012                                         <code>CUCSA</code>\r
3013                                         <scientific_name>Cucumis sativus</scientific_name>\r
3014                                         <common_name>Cucumber</common_name>\r
3015                                         <rank>species</rank>\r
3016                                       </taxonomy>\r
3017                                     </clade>\r
3018                                   </clade>\r
3019                                   <clade>\r
3020                                     <taxonomy>\r
3021                                       <id provider="uniprot">3814</id>\r
3022                                       <scientific_name>Papilionoideae</scientific_name>\r
3023                                       <rank>subfamily</rank>\r
3024                                     </taxonomy>\r
3025                                     <clade>\r
3026                                       <taxonomy>\r
3027                                         <id provider="uniprot">3847</id>\r
3028                                         <code>SOYBN</code>\r
3029                                         <scientific_name>Glycine max</scientific_name>\r
3030                                         <authority>cv. Wye</authority>\r
3031                                         <common_name>Soybean</common_name>\r
3032                                         <synonym>Glycine hispida</synonym>\r
3033                                         <rank>species</rank>\r
3034                                       </taxonomy>\r
3035                                     </clade>\r
3036                                     <clade>\r
3037                                       <taxonomy>\r
3038                                         <id provider="uniprot">3880</id>\r
3039                                         <code>MEDTR</code>\r
3040                                         <scientific_name>Medicago truncatula</scientific_name>\r
3041                                         <common_name>Barrel medic</common_name>\r
3042                                         <synonym>Medicago tribuloides</synonym>\r
3043                                         <rank>species</rank>\r
3044                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>\r
3045                                       </taxonomy>\r
3046                                     </clade>\r
3047                                   </clade>\r
3048                                 </clade>\r
3049                                 <clade>\r
3050                                   <taxonomy>\r
3051                                     <id provider="uniprot">3646</id>\r
3052                                     <scientific_name>Malpighiales</scientific_name>\r
3053                                     <rank>order</rank>\r
3054                                   </taxonomy>\r
3055                                   <clade>\r
3056                                     <taxonomy>\r
3057                                       <id provider="uniprot">3977</id>\r
3058                                       <scientific_name>Euphorbiaceae</scientific_name>\r
3059                                       <rank>family</rank>\r
3060                                     </taxonomy>\r
3061                                     <clade>\r
3062                                       <taxonomy>\r
3063                                         <id provider="uniprot">3983</id>\r
3064                                         <code>MANES</code>\r
3065                                         <scientific_name>Manihot esculenta</scientific_name>\r
3066                                         <common_name>Tapioca</common_name>\r
3067                                         <synonym>Jatropha manihot</synonym>\r
3068                                         <rank>species</rank>\r
3069                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>\r
3070                                       </taxonomy>\r
3071                                     </clade>\r
3072                                     <clade>\r
3073                                       <taxonomy>\r
3074                                         <id provider="uniprot">3988</id>\r
3075                                         <code>RICCO</code>\r
3076                                         <scientific_name>Ricinus communis</scientific_name>\r
3077                                         <common_name>Castor bean</common_name>\r
3078                                         <synonym>Ricinus sanguineus</synonym>\r
3079                                         <rank>species</rank>\r
3080                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>\r
3081                                       </taxonomy>\r
3082                                     </clade>\r
3083                                   </clade>\r
3084                                   <clade>\r
3085                                     <taxonomy>\r
3086                                       <id provider="uniprot">3694</id>\r
3087                                       <code>POPTR</code>\r
3088                                       <scientific_name>Populus trichocarpa</scientific_name>\r
3089                                       <common_name>Western balsam poplar</common_name>\r
3090                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>\r
3091                                       <rank>species</rank>\r
3092                                     </taxonomy>\r
3093                                   </clade>\r
3094                                 </clade>\r
3095                               </clade>\r
3096                               <clade>\r
3097                                 <taxonomy>\r
3098                                   <id provider="uniprot">91836</id>\r
3099                                   <scientific_name>malvids</scientific_name>\r
3100                                 </taxonomy>\r
3101                                 <clade>\r
3102                                   <name>Brassicales &amp; Sapindales</name>\r
3103                                   <clade>\r
3104                                     <taxonomy>\r
3105                                       <id provider="uniprot">3699</id>\r
3106                                       <scientific_name>Brassicales</scientific_name>\r
3107                                       <rank>order</rank>\r
3108                                     </taxonomy>\r
3109                                     <clade>\r
3110                                       <taxonomy>\r
3111                                         <id provider="uniprot">3700</id>\r
3112                                         <scientific_name>Brassicaceae</scientific_name>\r
3113                                         <rank>family</rank>\r
3114                                       </taxonomy>\r
3115                                       <clade>\r
3116                                         <taxonomy>\r
3117                                           <id provider="uniprot">3701</id>\r
3118                                           <scientific_name>Arabidopsis</scientific_name>\r
3119                                           <rank>genus</rank>\r
3120                                         </taxonomy>\r
3121                                         <clade>\r
3122                                           <taxonomy>\r
3123                                             <id provider="uniprot">59689</id>\r
3124                                             <code>ARALY</code>\r
3125                                             <scientific_name>Arabidopsis lyrata</scientific_name>\r
3126                                             <common_name>Lyre-leaved rock-cress</common_name>\r
3127                                             <rank>species</rank>\r
3128                                           </taxonomy>\r
3129                                         </clade>\r
3130                                         <clade>\r
3131                                           <taxonomy>\r
3132                                             <id provider="uniprot">3702</id>\r
3133                                             <code>ARATH</code>\r
3134                                             <scientific_name>Arabidopsis thaliana</scientific_name>\r
3135                                             <common_name>Mouse-ear cress</common_name>\r
3136                                             <rank>species</rank>\r
3137                                           </taxonomy>\r
3138                                         </clade>\r
3139                                       </clade>\r
3140                                       <clade>\r
3141                                         <taxonomy>\r
3142                                           <id provider="uniprot">98038</id>\r
3143                                           <code>THEHA</code>\r
3144                                           <scientific_name>Thellungiella halophila</scientific_name>\r
3145                                           <common_name>Salt cress</common_name>\r
3146                                           <rank>species</rank>\r
3147                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>\r
3148                                         </taxonomy>\r
3149                                       </clade>\r
3150                                     </clade>\r
3151                                     <clade>\r
3152                                       <taxonomy>\r
3153                                         <id provider="uniprot">3649</id>\r
3154                                         <code>CARPA</code>\r
3155                                         <scientific_name>Carica papaya</scientific_name>\r
3156                                         <common_name>Papaya</common_name>\r
3157                                         <rank>species</rank>\r
3158                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>\r
3159                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>\r
3160                                       </taxonomy>\r
3161                                     </clade>\r
3162                                   </clade>\r
3163                                   <clade>\r
3164                                     <taxonomy>\r
3165                                       <id provider="uniprot">2706</id>\r
3166                                       <scientific_name>Citrus</scientific_name>\r
3167                                       <rank>genus</rank>\r
3168                                     </taxonomy>\r
3169                                     <clade>\r
3170                                       <name>CITCLE</name>\r
3171                                       <taxonomy>\r
3172                                         <id provider="uniprot">85681</id>\r
3173                                         <scientific_name>Citrus clementina</scientific_name>\r
3174                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>\r
3175                                         <rank>species</rank>\r
3176                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>\r
3177                                       </taxonomy>\r
3178                                     </clade>\r
3179                                     <clade>\r
3180                                       <taxonomy>\r
3181                                         <id provider="uniprot">2711</id>\r
3182                                         <code>CITSI</code>\r
3183                                         <scientific_name>Citrus sinensis</scientific_name>\r
3184                                         <common_name>Sweet orange</common_name>\r
3185                                         <synonym>Citrus x sinensis</synonym>\r
3186                                         <synonym>Citrus aurantium var. sinensis</synonym>\r
3187                                         <rank>species</rank>\r
3188                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>\r
3189                                       </taxonomy>\r
3190                                     </clade>\r
3191                                   </clade>\r
3192                                 </clade>\r
3193                                 <clade>\r
3194                                   <taxonomy>\r
3195                                     <id provider="uniprot">71139</id>\r
3196                                     <code>EUCGR</code>\r
3197                                     <scientific_name>Eucalyptus grandis</scientific_name>\r
3198                                     <common_name>Flooded gum</common_name>\r
3199                                     <rank>species</rank>\r
3200                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>\r
3201                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>\r
3202                                   </taxonomy>\r
3203                                 </clade>\r
3204                               </clade>\r
3205                             </clade>\r
3206                             <clade>\r
3207                               <taxonomy>\r
3208                                 <id provider="eol">582304</id>\r
3209                                 <code>VITVI</code>\r
3210                                 <scientific_name>Vitis vinifera</scientific_name>\r
3211                                 <common_name>Grape</common_name>\r
3212                                 <rank>species</rank>\r
3213                               </taxonomy>\r
3214                             </clade>\r
3215                           </clade>\r
3216                           <clade>\r
3217                             <taxonomy>\r
3218                               <id provider="uniprot">91888</id>\r
3219                               <scientific_name>lamiids</scientific_name>\r
3220                             </taxonomy>\r
3221                             <clade>\r
3222                               <taxonomy>\r
3223                                 <id provider="uniprot">4070</id>\r
3224                                 <scientific_name>Solanaceae</scientific_name>\r
3225                                 <rank>family</rank>\r
3226                               </taxonomy>\r
3227                               <clade>\r
3228                                 <taxonomy>\r
3229                                   <id provider="uniprot">4107</id>\r
3230                                   <scientific_name>Solanum</scientific_name>\r
3231                                   <rank>genus</rank>\r
3232                                 </taxonomy>\r
3233                                 <clade>\r
3234                                   <taxonomy>\r
3235                                     <id provider="uniprot">49274</id>\r
3236                                     <scientific_name>Lycopersicon</scientific_name>\r
3237                                     <rank>subgenus</rank>\r
3238                                   </taxonomy>\r
3239                                   <clade>\r
3240                                     <taxonomy>\r
3241                                       <id provider="uniprot">4081</id>\r
3242                                       <code>SOLLC</code>\r
3243                                       <scientific_name>Solanum lycopersicum</scientific_name>\r
3244                                       <common_name>Tomato</common_name>\r
3245                                       <synonym>Lycopersicon esculentum</synonym>\r
3246                                       <rank>species</rank>\r
3247                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>\r
3248                                     </taxonomy>\r
3249                                   </clade>\r
3250                                   <clade>\r
3251                                     <taxonomy>\r
3252                                       <id provider="uniprot">4084</id>\r
3253                                       <code>SOLPI</code>\r
3254                                       <scientific_name>Solanum pimpinellifolium</scientific_name>\r
3255                                       <common_name>Currant tomato</common_name>\r
3256                                       <synonym>Lycopersicon pimpinellifolium</synonym>\r
3257                                       <rank>species</rank>\r
3258                                       <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>\r
3259                                     </taxonomy>\r
3260                                   </clade>\r
3261                                 </clade>\r
3262                                 <clade>\r
3263                                   <taxonomy>\r
3264                                     <id provider="4113">uniprot</id>\r
3265                                     <code>SOLTU</code>\r
3266                                     <scientific_name>Solanum tuberosum</scientific_name>\r
3267                                     <common_name>Potato</common_name>\r
3268                                     <rank>species</rank>\r
3269                                     <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>\r
3270                                   </taxonomy>\r
3271                                 </clade>\r
3272                               </clade>\r
3273                               <clade>\r
3274                                 <taxonomy>\r
3275                                   <id provider="uniprot">4097</id>\r
3276                                   <code>TOBAC</code>\r
3277                                   <scientific_name>Nicotiana tabacum</scientific_name>\r
3278                                   <common_name>Common tobacco</common_name>\r
3279                                   <rank>species</rank>\r
3280                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>\r
3281                                 </taxonomy>\r
3282                               </clade>\r
3283                             </clade>\r
3284                             <clade>\r
3285                               <taxonomy>\r
3286                                 <id provider="uniprot">4155</id>\r
3287                                 <code>MIMGU</code>\r
3288                                 <scientific_name>Mimulus guttatus</scientific_name>\r
3289                                 <common_name>Yellow monkey flower</common_name>\r
3290                                 <synonym>Yellow monkey flower</synonym>\r
3291                                 <rank>species</rank>\r
3292                               </taxonomy>\r
3293                             </clade>\r
3294                           </clade>\r
3295                         </clade>\r
3296                         <clade>\r
3297                           <taxonomy>\r
3298                             <id provider="uniprot">218851</id>\r
3299                             <code>AQUCA</code>\r
3300                             <scientific_name>Aquilegia caerulea</scientific_name>\r
3301                             <authority>E.James</authority>\r
3302                             <common_name>Rocky mountain columbine</common_name>\r
3303                             <synonym>Aquilegia coerulea</synonym>\r
3304                             <rank>species</rank>\r
3305                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>\r
3306                           </taxonomy>\r
3307                         </clade>\r
3308                       </clade>\r
3309                       <clade>\r
3310                         <taxonomy>\r
3311                           <id provider="uniprot">4479</id>\r
3312                           <scientific_name>Poaceae</scientific_name>\r
3313                           <common_name>grass family</common_name>\r
3314                           <synonym>Gramineae</synonym>\r
3315                           <rank>family</rank>\r
3316                         </taxonomy>\r
3317                         <clade>\r
3318                           <taxonomy>\r
3319                             <id provider="uniprot">147369</id>\r
3320                             <scientific_name>Panicoideae</scientific_name>\r
3321                             <authority>Link, 1827</authority>\r
3322                             <synonym>Centothecoideae</synonym>\r
3323                             <rank>subfamily</rank>\r
3324                           </taxonomy>\r
3325                           <clade>\r
3326                             <taxonomy>\r
3327                               <id provider="uniprot">147429</id>\r
3328                               <scientific_name>Andropogoneae</scientific_name>\r
3329                               <authority>Dumort., 1824</authority>\r
3330                               <rank>tribe</rank>\r
3331                             </taxonomy>\r
3332                             <clade>\r
3333                               <taxonomy>\r
3334                                 <id provider="uniprot">4558</id>\r
3335                                 <code>SORBI</code>\r
3336                                 <scientific_name>Sorghum bicolor</scientific_name>\r
3337                                 <common_name>Sorghum</common_name>\r
3338                                 <synonym>Sorghum vulgare</synonym>\r
3339                                 <rank>species</rank>\r
3340                               </taxonomy>\r
3341                             </clade>\r
3342                             <clade>\r
3343                               <taxonomy>\r
3344                                 <id provider="uniprot">4577</id>\r
3345                                 <code>MAIZE</code>\r
3346                                 <scientific_name>Zea mays</scientific_name>\r
3347                                 <common_name>Maize</common_name>\r
3348                                 <rank>species</rank>\r
3349                               </taxonomy>\r
3350                             </clade>\r
3351                           </clade>\r
3352                           <clade>\r
3353                             <taxonomy>\r
3354                               <id provider="uniprot">147428</id>\r
3355                               <scientific_name>Paniceae</scientific_name>\r
3356                               <rank>tribe</rank>\r
3357                             </taxonomy>\r
3358                             <clade>\r
3359                               <name>PANVIR</name>\r
3360                               <taxonomy>\r
3361                                 <id provider="uniprot">38727</id>\r
3362                                 <scientific_name>Panicum virgatum</scientific_name>\r
3363                                 <common_name>switchgrass</common_name>\r
3364                                 <rank>species</rank>\r
3365                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>\r
3366                               </taxonomy>\r
3367                             </clade>\r
3368                             <clade>\r
3369                               <taxonomy>\r
3370                                 <id provider="uniprot">4555</id>\r
3371                                 <code>SETIT</code>\r
3372                                 <scientific_name>Setaria italica</scientific_name>\r
3373                                 <common_name>Foxtail millet</common_name>\r
3374                                 <synonym>Panicum italicum</synonym>\r
3375                                 <rank>species</rank>\r
3376                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>\r
3377                               </taxonomy>\r
3378                             </clade>\r
3379                           </clade>\r
3380                         </clade>\r
3381                         <clade>\r
3382                           <taxonomy>\r
3383                             <id provider="uniprot">359160</id>\r
3384                             <scientific_name>BEP clade</scientific_name>\r
3385                           </taxonomy>\r
3386                           <clade>\r
3387                             <taxonomy>\r
3388                               <id provider="uniprot">4527</id>\r
3389                               <scientific_name>Oryza</scientific_name>\r
3390                               <rank>genus</rank>\r
3391                             </taxonomy>\r
3392                             <clade>\r
3393                               <taxonomy>\r
3394                                 <id provider="uniprot">4530</id>\r
3395                                 <code>ORYSA</code>\r
3396                                 <scientific_name>Oryza sativa</scientific_name>\r
3397                                 <common_name>Rice</common_name>\r
3398                                 <rank>species</rank>\r
3399                               </taxonomy>\r
3400                             </clade>\r
3401                             <clade>\r
3402                               <taxonomy>\r
3403                                 <id provider="uniprot">39947</id>\r
3404                                 <code>ORYSJ</code>\r
3405                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>\r
3406                                 <common_name>Rice</common_name>\r
3407                               </taxonomy>\r
3408                             </clade>\r
3409                           </clade>\r
3410                           <clade>\r
3411                             <taxonomy>\r
3412                               <id provider="uniprot">15368</id>\r
3413                               <code>BRADI</code>\r
3414                               <scientific_name>Brachypodium distachyon</scientific_name>\r
3415                               <common_name>Purple false brome</common_name>\r
3416                               <synonym>Trachynia distachya</synonym>\r
3417                               <rank>species</rank>\r
3418                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>\r
3419                             </taxonomy>\r
3420                           </clade>\r
3421                         </clade>\r
3422                       </clade>\r
3423                     </clade>\r
3424                     <clade>\r
3425                       <taxonomy>\r
3426                         <id provider="uniprot">34167</id>\r
3427                         <code>SELMO</code>\r
3428                         <scientific_name>Selaginella mollis</scientific_name>\r
3429                         <common_name>Moss</common_name>\r
3430                         <rank>species</rank>\r
3431                       </taxonomy>\r
3432                     </clade>\r
3433                   </clade>\r
3434                   <clade>\r
3435                     <taxonomy>\r
3436                       <id provider="uniprot">145481</id>\r
3437                       <code>PHYPA</code>\r
3438                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>\r
3439                       <common_name>Moss</common_name>\r
3440                       <rank>subspecies</rank>\r
3441                     </taxonomy>\r
3442                   </clade>\r
3443                 </clade>\r
3444                 <clade>\r
3445                   <taxonomy>\r
3446                     <id provider="uniprot">3041</id>\r
3447                     <scientific_name>Chlorophyta</scientific_name>\r
3448                     <rank>phylum</rank>\r
3449                   </taxonomy>\r
3450                   <clade>\r
3451                     <taxonomy>\r
3452                       <id provider="uniprot">13792</id>\r
3453                       <scientific_name>Mamiellales</scientific_name>\r
3454                       <rank>order</rank>\r
3455                     </taxonomy>\r
3456                     <clade>\r
3457                       <taxonomy>\r
3458                         <id provider="uniprot">70447</id>\r
3459                         <scientific_name>Ostreococcus</scientific_name>\r
3460                         <rank>genus</rank>\r
3461                       </taxonomy>\r
3462                       <clade>\r
3463                         <taxonomy>\r
3464                           <id provider="uniprot">436017</id>\r
3465                           <code>OSTLU</code>\r
3466                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>\r
3467                         </taxonomy>\r
3468                       </clade>\r
3469                       <clade>\r
3470                         <taxonomy>\r
3471                           <id provider="uniprot">70448</id>\r
3472                           <code>OSTTA</code>\r
3473                           <scientific_name>Ostreococcus tauri</scientific_name>\r
3474                           <rank>species</rank>\r
3475                         </taxonomy>\r
3476                       </clade>\r
3477                     </clade>\r
3478                     <clade>\r
3479                       <taxonomy>\r
3480                         <id provider="uniprot">38832</id>\r
3481                         <scientific_name>Micromonas</scientific_name>\r
3482                         <rank>genus</rank>\r
3483                       </taxonomy>\r
3484                       <clade>\r
3485                         <taxonomy>\r
3486                           <id provider="uniprot">564608</id>\r
3487                           <code>MICPC</code>\r
3488                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>\r
3489                           <common_name>Picoplanktonic green alga</common_name>\r
3490                         </taxonomy>\r
3491                       </clade>\r
3492                       <clade>\r
3493                         <taxonomy>\r
3494                           <id provider="uniprot">296587</id>\r
3495                           <code>MICSR</code>\r
3496                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>\r
3497                           <common_name>Picoplanktonic green alga</common_name>\r
3498                           <synonym>Micromonas sp. RCC299</synonym>\r
3499                           <rank>species</rank>\r
3500                         </taxonomy>\r
3501                       </clade>\r
3502                     </clade>\r
3503                   </clade>\r
3504                   <clade>\r
3505                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>\r
3506                     <clade>\r
3507                       <taxonomy>\r
3508                         <id provider="uniprot">75966</id>\r
3509                         <scientific_name>Trebouxiophyceae</scientific_name>\r
3510                         <rank>class</rank>\r
3511                       </taxonomy>\r
3512                       <clade>\r
3513                         <name>ASTSPC</name>\r
3514                         <taxonomy>\r
3515                           <id provider="uniprot">763042</id>\r
3516                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>\r
3517                           <rank>species</rank>\r
3518                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>\r
3519                         </taxonomy>\r
3520                       </clade>\r
3521                       <clade>\r
3522                         <name>CHLVUL</name>\r
3523                         <taxonomy>\r
3524                           <id provider="uniprot">574566</id>\r
3525                           <scientific_name>Coccomyxa sp. C-169</scientific_name>\r
3526                           <synonym>Chlorella vulgaris C-169</synonym>\r
3527                           <rank>species</rank>\r
3528                         </taxonomy>\r
3529                       </clade>\r
3530                     </clade>\r
3531                     <clade>\r
3532                       <taxonomy>\r
3533                         <id provider="uniprot">3042</id>\r
3534                         <scientific_name>Chlamydomonadales</scientific_name>\r
3535                         <rank>order</rank>\r
3536                       </taxonomy>\r
3537                       <clade>\r
3538                         <taxonomy>\r
3539                           <id provider="uniprot">3055</id>\r
3540                           <code>CHLRE</code>\r
3541                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>\r
3542                           <synonym>Chlamydomonas smithii</synonym>\r
3543                           <rank>species</rank>\r
3544                         </taxonomy>\r
3545                       </clade>\r
3546                       <clade>\r
3547                         <taxonomy>\r
3548                           <id provider="uniprot">3067</id>\r
3549                           <code>VOLCA</code>\r
3550                           <scientific_name>Volvox carteri</scientific_name>\r
3551                           <common_name>Green alga</common_name>\r
3552                           <rank>species</rank>\r
3553                         </taxonomy>\r
3554                       </clade>\r
3555                     </clade>\r
3556                   </clade>\r
3557                 </clade>\r
3558               </clade>\r
3559               <clade>\r
3560                 <taxonomy>\r
3561                   <id provider="uniprot">45157</id>\r
3562                   <code>CYAME</code>\r
3563                   <scientific_name>Cyanidioschyzon merolae</scientific_name>\r
3564                   <common_name>Red alga</common_name>\r
3565                   <rank>species</rank>\r
3566                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>\r
3567                 </taxonomy>\r
3568               </clade>\r
3569             </clade>\r
3570             <clade>\r
3571               <name>Chromalveolate</name>\r
3572               <reference doi="10.1073/pnas.0712248105">\r
3573               </reference>\r
3574               <clade>\r
3575                 <name>Heterokonta_Alveolata</name>\r
3576                 <clade>\r
3577                   <name>Alveolata</name>\r
3578                   <taxonomy>\r
3579                     <id provider="uniprot">33630</id>\r
3580                     <scientific_name>Alveolata</scientific_name>\r
3581                   </taxonomy>\r
3582                   <clade>\r
3583                     <taxonomy>\r
3584                       <id provider="uniprot">5794</id>\r
3585                       <scientific_name>Apicomplexa</scientific_name>\r
3586                       <rank>phylum</rank>\r
3587                     </taxonomy>\r
3588                     <clade>\r
3589                       <taxonomy>\r
3590                         <id provider="uniprot">422676</id>\r
3591                         <scientific_name>Aconoidasida</scientific_name>\r
3592                         <rank>class</rank>\r
3593                       </taxonomy>\r
3594                       <clade>\r
3595                         <taxonomy>\r
3596                           <id provider="uniprot">5820</id>\r
3597                           <scientific_name>Plasmodium</scientific_name>\r
3598                           <rank>genus</rank>\r
3599                         </taxonomy>\r
3600                         <clade>\r
3601                           <taxonomy>\r
3602                             <id provider="uniprot">5825</id>\r
3603                             <code>PLACH</code>\r
3604                             <scientific_name>Plasmodium chabaudi</scientific_name>\r
3605                             <rank>species</rank>\r
3606                           </taxonomy>\r
3607                         </clade>\r
3608                         <clade>\r
3609                           <taxonomy>\r
3610                             <id provider="uniprot">73239</id>\r
3611                             <code>PLAYO</code>\r
3612                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>\r
3613                             <rank>subspecies</rank>\r
3614                           </taxonomy>\r
3615                         </clade>\r
3616                       </clade>\r
3617                       <clade>\r
3618                         <name>Theileria</name>\r
3619                         <taxonomy>\r
3620                           <id provider="uniprot">5873</id>\r
3621                           <scientific_name>Theileria</scientific_name>\r
3622                           <rank>genus</rank>\r
3623                         </taxonomy>\r
3624                         <clade>\r
3625                           <taxonomy>\r
3626                             <id provider="uniprot">5874</id>\r
3627                             <code>THEAN</code>\r
3628                             <scientific_name>Theileria annulata</scientific_name>\r
3629                             <rank>species</rank>\r
3630                           </taxonomy>\r
3631                         </clade>\r
3632                         <clade>\r
3633                           <taxonomy>\r
3634                             <id provider="uniprot">5875</id>\r
3635                             <code>THEPA</code>\r
3636                             <scientific_name>Theileria parva</scientific_name>\r
3637                             <rank>species</rank>\r
3638                           </taxonomy>\r
3639                         </clade>\r
3640                       </clade>\r
3641                     </clade>\r
3642                     <clade>\r
3643                       <taxonomy>\r
3644                         <id provider="uniprot">423054</id>\r
3645                         <scientific_name>Eimeriorina</scientific_name>\r
3646                         <rank>suborder</rank>\r
3647                       </taxonomy>\r
3648                       <clade>\r
3649                         <taxonomy>\r
3650                           <id provider="uniprot">5806</id>\r
3651                           <scientific_name>Cryptosporidium</scientific_name>\r
3652                           <rank>genus</rank>\r
3653                         </taxonomy>\r
3654                         <clade>\r
3655                           <taxonomy>\r
3656                             <id provider="uniprot">237895</id>\r
3657                             <code>CRYHO</code>\r
3658                             <scientific_name>Cryptosporidium hominis</scientific_name>\r
3659                             <rank>species</rank>\r
3660                           </taxonomy>\r
3661                         </clade>\r
3662                         <clade>\r
3663                           <taxonomy>\r
3664                             <id provider="uniprot">5807</id>\r
3665                             <code>CRYPV</code>\r
3666                             <scientific_name>Cryptosporidium parvum</scientific_name>\r
3667                             <rank>species</rank>\r
3668                           </taxonomy>\r
3669                         </clade>\r
3670                       </clade>\r
3671                       <clade>\r
3672                         <name>Eimeria &amp; Toxoplasma</name>\r
3673                         <distribution>\r
3674                           <point geodetic_datum="?" alt_unit="?">\r
3675                             <lat>0</lat>\r
3676                             <long>0</long>\r
3677                             <alt>0</alt>\r
3678                           </point>\r
3679                         </distribution>\r
3680                         <reference doi="10.1093/molbev/msn213">\r
3681                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>\r
3682                         </reference>\r
3683                         <reference>\r
3684                         </reference>\r
3685                         <clade>\r
3686                           <taxonomy>\r
3687                             <id provider="uniprot">5802</id>\r
3688                             <code>EIMTE</code>\r
3689                             <scientific_name>Eimeria tenella</scientific_name>\r
3690                             <common_name>Coccidian parasite</common_name>\r
3691                             <rank>species</rank>\r
3692                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>\r
3693                           </taxonomy>\r
3694                         </clade>\r
3695                         <clade>\r
3696                           <taxonomy>\r
3697                             <id provider="uniprot">5811</id>\r
3698                             <code>TOXGO</code>\r
3699                             <scientific_name>Toxoplasma gondii</scientific_name>\r
3700                             <rank>species</rank>\r
3701                           </taxonomy>\r
3702                         </clade>\r
3703                       </clade>\r
3704                     </clade>\r
3705                   </clade>\r
3706                   <clade>\r
3707                     <taxonomy>\r
3708                       <id provider="uniprot">6020</id>\r
3709                       <scientific_name>Oligohymenophorea</scientific_name>\r
3710                       <rank>class</rank>\r
3711                     </taxonomy>\r
3712                     <clade>\r
3713                       <taxonomy>\r
3714                         <id provider="uniprot">5888</id>\r
3715                         <code>PARTE</code>\r
3716                         <scientific_name>Paramecium tetraurelia</scientific_name>\r
3717                         <rank>species</rank>\r
3718                       </taxonomy>\r
3719                     </clade>\r
3720                     <clade>\r
3721                       <taxonomy>\r
3722                         <id provider="uniprot">5911</id>\r
3723                         <code>TETTH</code>\r
3724                         <scientific_name>Tetrahymena thermophila</scientific_name>\r
3725                         <rank>species</rank>\r
3726                       </taxonomy>\r
3727                     </clade>\r
3728                   </clade>\r
3729                 </clade>\r
3730                 <clade>\r
3731                   <name>Heterokonta</name>\r
3732                   <taxonomy>\r
3733                     <id provider="uniprot">33634</id>\r
3734                     <scientific_name>stramenopiles</scientific_name>\r
3735                     <synonym>Chromophyta</synonym>\r
3736                   </taxonomy>\r
3737                   <clade>\r
3738                     <name>Pelagophyceae_Bacillariophyta</name>\r
3739                     <clade>\r
3740                       <taxonomy>\r
3741                         <id provider="uniprot">2836</id>\r
3742                         <scientific_name>Bacillariophyta</scientific_name>\r
3743                         <common_name>diatoms</common_name>\r
3744                         <rank>phylum</rank>\r
3745                       </taxonomy>\r
3746                       <clade>\r
3747                         <taxonomy>\r
3748                           <id provider="uniprot">33850</id>\r
3749                           <scientific_name>Bacillariophycidae</scientific_name>\r
3750                         </taxonomy>\r
3751                         <clade>\r
3752                           <taxonomy>\r
3753                             <id provider="eol">911694</id>\r
3754                             <code>FRACY</code>\r
3755                             <scientific_name>Fragilariopsis cylindrus</scientific_name>\r
3756                             <authority>Krieger</authority>\r
3757                             <synonym>Nitzschia cylindrus</synonym>\r
3758                             <rank>species</rank>\r
3759                           </taxonomy>\r
3760                         </clade>\r
3761                         <clade>\r
3762                           <taxonomy>\r
3763                             <id provider="eol">912693</id>\r
3764                             <code>PHATR</code>\r
3765                             <scientific_name>Phaeodactylum tricornutum</scientific_name>\r
3766                             <authority>Bohlin</authority>\r
3767                             <rank>species</rank>\r
3768                           </taxonomy>\r
3769                         </clade>\r
3770                       </clade>\r
3771                       <clade>\r
3772                         <taxonomy>\r
3773                           <id provider="eol">916868</id>\r
3774                           <code>THAPS</code>\r
3775                           <scientific_name>Thalassiosira pseudonana</scientific_name>\r
3776                           <authority>Hasle &amp; Heimdal</authority>\r
3777                           <common_name>Marine diatom</common_name>\r
3778                           <synonym>Cyclotella nana</synonym>\r
3779                           <rank>species</rank>\r
3780                         </taxonomy>\r
3781                       </clade>\r
3782                     </clade>\r
3783                     <clade>\r
3784                       <taxonomy>\r
3785                         <id provider="eol">912461</id>\r
3786                         <code>AURAN</code>\r
3787                         <scientific_name>Aureococcus anophagefferens</scientific_name>\r
3788                         <authority>Hargraves &amp; Sieburth</authority>\r
3789                         <rank>species</rank>\r
3790                       </taxonomy>\r
3791                     </clade>\r
3792                   </clade>\r
3793                   <clade>\r
3794                     <taxonomy>\r
3795                       <id provider="uniprot">4783</id>\r
3796                       <scientific_name>Phytophthora</scientific_name>\r
3797                       <rank>genus</rank>\r
3798                     </taxonomy>\r
3799                     <clade>\r
3800                       <taxonomy>\r
3801                         <id provider="uniprot">4787</id>\r
3802                         <code>PHYIN</code>\r
3803                         <scientific_name>Phytophthora infestans</scientific_name>\r
3804                         <common_name>Potato late blight fungus</common_name>\r
3805                         <rank>species</rank>\r
3806                       </taxonomy>\r
3807                     </clade>\r
3808                     <clade>\r
3809                       <name>PHYSO</name>\r
3810                       <taxonomy>\r
3811                         <id provider="uniprot">67593</id>\r
3812                         <scientific_name>Phytophthora sojae</scientific_name>\r
3813                         <rank>species</rank>\r
3814                       </taxonomy>\r
3815                     </clade>\r
3816                   </clade>\r
3817                 </clade>\r
3818               </clade>\r
3819               <clade>\r
3820                 <taxonomy>\r
3821                   <id provider="uniprot">2903</id>\r
3822                   <code>EMIHU</code>\r
3823                   <scientific_name>Emiliania huxleyi</scientific_name>\r
3824                   <rank>species</rank>\r
3825                 </taxonomy>\r
3826               </clade>\r
3827             </clade>\r
3828           </clade>\r
3829           <clade>\r
3830             <name>Excavata</name>\r
3831             <reference doi="10.1038/nature04546">\r
3832             </reference>\r
3833             <clade>\r
3834               <name>Kinetoplastida_Heterolobosea</name>\r
3835               <clade>\r
3836                 <taxonomy>\r
3837                   <id provider="uniprot">5654</id>\r
3838                   <scientific_name>Trypanosomatidae</scientific_name>\r
3839                   <rank>family</rank>\r
3840                 </taxonomy>\r
3841                 <clade>\r
3842                   <taxonomy>\r
3843                     <id provider="uniprot">5664</id>\r
3844                     <code>LEIMA</code>\r
3845                     <scientific_name>Leishmania major</scientific_name>\r
3846                     <rank>species</rank>\r
3847                   </taxonomy>\r
3848                 </clade>\r
3849                 <clade>\r
3850                   <taxonomy>\r
3851                     <id provider="uniprot">5702</id>\r
3852                     <code>TRYBB</code>\r
3853                     <scientific_name>Trypanosoma brucei brucei</scientific_name>\r
3854                     <rank>subspecies</rank>\r
3855                   </taxonomy>\r
3856                 </clade>\r
3857               </clade>\r
3858               <clade>\r
3859                 <taxonomy>\r
3860                   <id provider="uniprot">5762</id>\r
3861                   <code>NAEGR</code>\r
3862                   <scientific_name>Naegleria gruberi</scientific_name>\r
3863                   <common_name>Amoeba</common_name>\r
3864                   <rank>species</rank>\r
3865                 </taxonomy>\r
3866               </clade>\r
3867             </clade>\r
3868             <clade>\r
3869               <name>Metamonada</name>\r
3870               <clade>\r
3871                 <taxonomy>\r
3872                   <id provider="uniprot">5741</id>\r
3873                   <code>GIALA</code>\r
3874                   <scientific_name>Giardia lamblia</scientific_name>\r
3875                   <synonym>Giardia intestinalis</synonym>\r
3876                   <synonym>Giardia lamblia</synonym>\r
3877                   <rank>species</rank>\r
3878                 </taxonomy>\r
3879               </clade>\r
3880               <clade>\r
3881                 <taxonomy>\r
3882                   <id provider="uniprot">5722</id>\r
3883                   <code>TRIVA</code>\r
3884                   <scientific_name>Trichomonas vaginalis</scientific_name>\r
3885                   <rank>species</rank>\r
3886                 </taxonomy>\r
3887               </clade>\r
3888             </clade>\r
3889           </clade>\r
3890         </clade>\r
3891       </clade>\r
3892       <clade>\r
3893         <name>Archaea</name>\r
3894         <taxonomy>\r
3895           <id provider="uniprot">2157</id>\r
3896           <scientific_name>Archaea</scientific_name>\r
3897           <rank>superkingdom</rank>\r
3898         </taxonomy>\r
3899         <clade>\r
3900           <name>a_62</name>\r
3901           <clade>\r
3902             <name>a_56</name>\r
3903             <clade>\r
3904               <taxonomy>\r
3905                 <id provider="uniprot">28890</id>\r
3906                 <scientific_name>Euryarchaeota</scientific_name>\r
3907                 <rank>phylum</rank>\r
3908               </taxonomy>\r
3909               <clade>\r
3910                 <name>a_44</name>\r
3911                 <clade>\r
3912                   <name>a_28</name>\r
3913                   <clade>\r
3914                     <name>a_26</name>\r
3915                     <clade>\r
3916                       <taxonomy>\r
3917                         <id provider="uniprot">224756</id>\r
3918                         <scientific_name>Methanomicrobia</scientific_name>\r
3919                         <rank>class</rank>\r
3920                       </taxonomy>\r
3921                       <clade>\r
3922                         <name>a_14</name>\r
3923                         <clade>\r
3924                           <name>a_12</name>\r
3925                           <clade>\r
3926                             <taxonomy>\r
3927                               <id provider="uniprot">2206</id>\r
3928                               <scientific_name>Methanosarcinaceae</scientific_name>\r
3929                               <rank>family</rank>\r
3930                             </taxonomy>\r
3931                             <clade>\r
3932                               <taxonomy>\r
3933                                 <id provider="uniprot">2207</id>\r
3934                                 <scientific_name>Methanosarcina</scientific_name>\r
3935                                 <rank>genus</rank>\r
3936                               </taxonomy>\r
3937                               <clade>\r
3938                                 <name>a_2</name>\r
3939                                 <clade>\r
3940                                   <taxonomy>\r
3941                                     <id provider="uniprot">2214</id>\r
3942                                     <code>METAC</code>\r
3943                                     <scientific_name>Methanosarcina acetivorans</scientific_name>\r
3944                                     <rank>species</rank>\r
3945                                   </taxonomy>\r
3946                                 </clade>\r
3947                                 <clade>\r
3948                                   <taxonomy>\r
3949                                     <id provider="uniprot">269797</id>\r
3950                                     <code>METBF</code>\r
3951                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>\r
3952                                   </taxonomy>\r
3953                                 </clade>\r
3954                               </clade>\r
3955                               <clade>\r
3956                                 <taxonomy>\r
3957                                   <id provider="uniprot">2209</id>\r
3958                                   <code>METMA</code>\r
3959                                   <scientific_name>Methanosarcina mazei</scientific_name>\r
3960                                   <synonym>Methanosarcina frisia</synonym>\r
3961                                   <rank>species</rank>\r
3962                                 </taxonomy>\r
3963                               </clade>\r
3964                             </clade>\r
3965                             <clade>\r
3966                               <taxonomy>\r
3967                                 <id provider="uniprot">259564</id>\r
3968                                 <code>METBU</code>\r
3969                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>\r
3970                               </taxonomy>\r
3971                             </clade>\r
3972                           </clade>\r
3973                           <clade>\r
3974                             <name>a_11</name>\r
3975                             <taxonomy>\r
3976                               <id provider="uniprot">2191</id>\r
3977                               <scientific_name>Methanomicrobiales</scientific_name>\r
3978                               <rank>order</rank>\r
3979                             </taxonomy>\r
3980                             <clade>\r
3981                               <name>a_9</name>\r
3982                               <clade>\r
3983                                 <taxonomy>\r
3984                                   <id provider="uniprot">456442</id>\r
3985                                   <code>METB6</code>\r
3986                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>\r
3987                                 </taxonomy>\r
3988                               </clade>\r
3989                               <clade>\r
3990                                 <taxonomy>\r
3991                                   <id provider="uniprot">2203</id>\r
3992                                   <code>METHU</code>\r
3993                                   <scientific_name>Methanospirillum hungatei</scientific_name>\r
3994                                   <rank>species</rank>\r
3995                                 </taxonomy>\r
3996                               </clade>\r
3997                             </clade>\r
3998                             <clade>\r
3999                               <taxonomy>\r
4000                                 <id provider="uniprot">368407</id>\r
4001                                 <code>METMJ</code>\r
4002                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>\r
4003                               </taxonomy>\r
4004                             </clade>\r
4005                           </clade>\r
4006                         </clade>\r
4007                         <clade>\r
4008                           <taxonomy>\r
4009                             <id provider="uniprot">410358</id>\r
4010                             <code>METLZ</code>\r
4011                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>\r
4012                           </taxonomy>\r
4013                         </clade>\r
4014                       </clade>\r
4015                       <clade>\r
4016                         <taxonomy>\r
4017                           <id provider="uniprot">349307</id>\r
4018                           <code>METTP</code>\r
4019                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>\r
4020                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>\r
4021                         </taxonomy>\r
4022                       </clade>\r
4023                     </clade>\r
4024                     <clade>\r
4025                       <name>a_25</name>\r
4026                       <taxonomy>\r
4027                         <id provider="uniprot">2236</id>\r
4028                         <scientific_name>Halobacteriaceae</scientific_name>\r
4029                         <rank>family</rank>\r
4030                       </taxonomy>\r
4031                       <clade>\r
4032                         <name>a_23</name>\r
4033                         <clade>\r
4034                           <name>a_19</name>\r
4035                           <clade>\r
4036                             <taxonomy>\r
4037                               <id provider="uniprot">2238</id>\r
4038                               <code>HALMA</code>\r
4039                               <scientific_name>Haloarcula marismortui</scientific_name>\r
4040                               <synonym>Halobacterium marismortui</synonym>\r
4041                               <rank>species</rank>\r
4042                             </taxonomy>\r
4043                           </clade>\r
4044                           <clade>\r
4045                             <taxonomy>\r
4046                               <id provider="uniprot">2257</id>\r
4047                               <code>NATPH</code>\r
4048                               <scientific_name>Natronomonas pharaonis</scientific_name>\r
4049                               <common_name>Natronobacterium pharaonis</common_name>\r
4050                               <rank>species</rank>\r
4051                             </taxonomy>\r
4052                           </clade>\r
4053                         </clade>\r
4054                         <clade>\r
4055                           <name>a_22</name>\r
4056                           <taxonomy>\r
4057                             <id provider="uniprot">2239</id>\r
4058                             <scientific_name>Halobacterium</scientific_name>\r
4059                             <rank>genus</rank>\r
4060                           </taxonomy>\r
4061                           <clade>\r
4062                             <taxonomy>\r
4063                               <id provider="uniprot">478009</id>\r
4064                               <code>HALS3</code>\r
4065                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>\r
4066                             </taxonomy>\r
4067                           </clade>\r
4068                           <clade>\r
4069                             <taxonomy>\r
4070                               <id provider="uniprot">2243</id>\r
4071                               <code>HALSP</code>\r
4072                               <scientific_name>Halobacterium sp.</scientific_name>\r
4073                               <rank>species</rank>\r
4074                             </taxonomy>\r
4075                           </clade>\r
4076                         </clade>\r
4077                       </clade>\r
4078                       <clade>\r
4079                         <taxonomy>\r
4080                           <id provider="uniprot">362976</id>\r
4081                           <code>HALWD</code>\r
4082                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>\r
4083                         </taxonomy>\r
4084                       </clade>\r
4085                     </clade>\r
4086                   </clade>\r
4087                   <clade>\r
4088                     <taxonomy>\r
4089                       <id provider="uniprot">2234</id>\r
4090                       <code>ARCFU</code>\r
4091                       <scientific_name>Archaeoglobus fulgidus</scientific_name>\r
4092                       <rank>species</rank>\r
4093                     </taxonomy>\r
4094                   </clade>\r
4095                 </clade>\r
4096                 <clade>\r
4097                   <name>a_43</name>\r
4098                   <clade>\r
4099                     <name>a_41</name>\r
4100                     <clade>\r
4101                       <name>a_35</name>\r
4102                       <taxonomy>\r
4103                         <id provider="uniprot">2182</id>\r
4104                         <scientific_name>Methanococcales</scientific_name>\r
4105                         <rank>order</rank>\r
4106                       </taxonomy>\r
4107                       <clade>\r
4108                         <name>a_31</name>\r
4109                         <clade>\r
4110                           <taxonomy>\r
4111                             <id provider="uniprot">2190</id>\r
4112                             <code>METJA</code>\r
4113                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>\r
4114                             <synonym>Methanococcus jannaschii</synonym>\r
4115                             <rank>species</rank>\r
4116                           </taxonomy>\r
4117                         </clade>\r
4118                         <clade>\r
4119                           <taxonomy>\r
4120                             <id provider="uniprot">419665</id>\r
4121                             <code>META3</code>\r
4122                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>\r
4123                           </taxonomy>\r
4124                         </clade>\r
4125                       </clade>\r
4126                       <clade>\r
4127                         <name>a_34</name>\r
4128                         <taxonomy>\r
4129                           <id provider="uniprot">2184</id>\r
4130                           <scientific_name>Methanococcus</scientific_name>\r
4131                           <rank>genus</rank>\r
4132                         </taxonomy>\r
4133                         <clade>\r
4134                           <taxonomy>\r
4135                             <id provider="uniprot">39152</id>\r
4136                             <code>METMP</code>\r
4137                             <scientific_name>Methanococcus maripaludis</scientific_name>\r
4138                             <synonym>Methanococcus deltae</synonym>\r
4139                             <rank>species</rank>\r
4140                           </taxonomy>\r
4141                         </clade>\r
4142                         <clade>\r
4143                           <taxonomy>\r
4144                             <id provider="uniprot">406327</id>\r
4145                             <code>METVS</code>\r
4146                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>\r
4147                           </taxonomy>\r
4148                         </clade>\r
4149                       </clade>\r
4150                     </clade>\r
4151                     <clade>\r
4152                       <name>a_40</name>\r
4153                       <taxonomy>\r
4154                         <id provider="uniprot">2159</id>\r
4155                         <scientific_name>Methanobacteriaceae</scientific_name>\r
4156                         <rank>family</rank>\r
4157                       </taxonomy>\r
4158                       <clade>\r
4159                         <name>a_38</name>\r
4160                         <clade>\r
4161                           <taxonomy>\r
4162                             <id provider="uniprot">420247</id>\r
4163                             <code>METS3</code>\r
4164                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>\r
4165                           </taxonomy>\r
4166                         </clade>\r
4167                         <clade>\r
4168                           <taxonomy>\r
4169                             <id provider="uniprot">339860</id>\r
4170                             <code>METST</code>\r
4171                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>\r
4172                           </taxonomy>\r
4173                         </clade>\r
4174                       </clade>\r
4175                       <clade>\r
4176                         <taxonomy>\r
4177                           <id provider="uniprot">187420</id>\r
4178                           <code>METTH</code>\r
4179                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>\r
4180                         </taxonomy>\r
4181                       </clade>\r
4182                     </clade>\r
4183                   </clade>\r
4184                   <clade>\r
4185                     <taxonomy>\r
4186                       <id provider="uniprot">2320</id>\r
4187                       <code>METKA</code>\r
4188                       <scientific_name>Methanopyrus kandleri</scientific_name>\r
4189                       <rank>species</rank>\r
4190                     </taxonomy>\r
4191                   </clade>\r
4192                 </clade>\r
4193               </clade>\r
4194               <clade>\r
4195                 <name>a_51</name>\r
4196                 <taxonomy>\r
4197                   <id provider="uniprot">2259</id>\r
4198                   <scientific_name>Thermococcaceae</scientific_name>\r
4199                   <rank>family</rank>\r
4200                 </taxonomy>\r
4201                 <clade>\r
4202                   <name>a_47</name>\r
4203                   <clade>\r
4204                     <taxonomy>\r
4205                       <id provider="uniprot">2261</id>\r
4206                       <code>PYRFU</code>\r
4207                       <scientific_name>Pyrococcus furiosus</scientific_name>\r
4208                       <rank>species</rank>\r
4209                     </taxonomy>\r
4210                   </clade>\r
4211                   <clade>\r
4212                     <taxonomy>\r
4213                       <id provider="uniprot">69014</id>\r
4214                       <code>PYRKO</code>\r
4215                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>\r
4216                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>\r
4217                     </taxonomy>\r
4218                   </clade>\r
4219                 </clade>\r
4220                 <clade>\r
4221                   <name>a_50</name>\r
4222                   <taxonomy>\r
4223                     <id provider="uniprot">2260</id>\r
4224                     <scientific_name>Pyrococcus</scientific_name>\r
4225                     <rank>genus</rank>\r
4226                   </taxonomy>\r
4227                   <clade>\r
4228                     <taxonomy>\r
4229                       <id provider="uniprot">29292</id>\r
4230                       <code>PYRAB</code>\r
4231                       <scientific_name>Pyrococcus abyssi</scientific_name>\r
4232                       <rank>species</rank>\r
4233                     </taxonomy>\r
4234                   </clade>\r
4235                   <clade>\r
4236                     <taxonomy>\r
4237                       <id provider="uniprot">53953</id>\r
4238                       <code>PYRHO</code>\r
4239                       <scientific_name>Pyrococcus horikoshii</scientific_name>\r
4240                       <rank>species</rank>\r
4241                     </taxonomy>\r
4242                   </clade>\r
4243                 </clade>\r
4244               </clade>\r
4245             </clade>\r
4246             <clade>\r
4247               <name>a_55</name>\r
4248               <clade>\r
4249                 <taxonomy>\r
4250                   <id provider="uniprot">228908</id>\r
4251                   <code>NANEQ</code>\r
4252                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>\r
4253                 </taxonomy>\r
4254               </clade>\r
4255               <clade>\r
4256                 <taxonomy>\r
4257                   <id provider="uniprot">436308</id>\r
4258                   <code>NITMS</code>\r
4259                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>\r
4260                 </taxonomy>\r
4261               </clade>\r
4262             </clade>\r
4263           </clade>\r
4264           <clade>\r
4265             <taxonomy>\r
4266               <id provider="uniprot">2301</id>\r
4267               <scientific_name>Thermoplasmatales</scientific_name>\r
4268               <rank>order</rank>\r
4269             </taxonomy>\r
4270             <clade>\r
4271               <name>a_59</name>\r
4272               <taxonomy>\r
4273                 <id provider="uniprot">2302</id>\r
4274                 <scientific_name>Thermoplasma</scientific_name>\r
4275                 <rank>genus</rank>\r
4276               </taxonomy>\r
4277               <clade>\r
4278                 <taxonomy>\r
4279                   <id provider="uniprot">273075</id>\r
4280                   <code>THEAC</code>\r
4281                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>\r
4282                 </taxonomy>\r
4283               </clade>\r
4284               <clade>\r
4285                 <taxonomy>\r
4286                   <id provider="uniprot">273116</id>\r
4287                   <code>THEVO</code>\r
4288                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>\r
4289                 </taxonomy>\r
4290               </clade>\r
4291             </clade>\r
4292             <clade>\r
4293               <taxonomy>\r
4294                 <id provider="uniprot">263820</id>\r
4295                 <code>PICTO</code>\r
4296                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>\r
4297               </taxonomy>\r
4298             </clade>\r
4299           </clade>\r
4300         </clade>\r
4301         <clade>\r
4302           <name>a_93</name>\r
4303           <clade>\r
4304             <taxonomy>\r
4305               <id provider="uniprot">183924</id>\r
4306               <scientific_name>Thermoprotei</scientific_name>\r
4307               <rank>class</rank>\r
4308             </taxonomy>\r
4309             <clade>\r
4310               <name>a_83</name>\r
4311               <clade>\r
4312                 <name>a_81</name>\r
4313                 <clade>\r
4314                   <name>a_73</name>\r
4315                   <taxonomy>\r
4316                     <id provider="uniprot">2267</id>\r
4317                     <scientific_name>Thermoproteaceae</scientific_name>\r
4318                     <rank>family</rank>\r
4319                   </taxonomy>\r
4320                   <clade>\r
4321                     <name>a_71</name>\r
4322                     <clade>\r
4323                       <name>a_67</name>\r
4324                       <taxonomy>\r
4325                         <id provider="uniprot">2276</id>\r
4326                         <scientific_name>Pyrobaculum</scientific_name>\r
4327                         <rank>genus</rank>\r
4328                       </taxonomy>\r
4329                       <clade>\r
4330                         <name>a_65</name>\r
4331                         <clade>\r
4332                           <taxonomy>\r
4333                             <id provider="uniprot">340102</id>\r
4334                             <code>PYRAR</code>\r
4335                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>\r
4336                           </taxonomy>\r
4337                         </clade>\r
4338                         <clade>\r
4339                           <taxonomy>\r
4340                             <id provider="uniprot">410359</id>\r
4341                             <code>PYRCJ</code>\r
4342                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>\r
4343                           </taxonomy>\r
4344                         </clade>\r
4345                       </clade>\r
4346                       <clade>\r
4347                         <taxonomy>\r
4348                           <id provider="uniprot">13773</id>\r
4349                           <code>PYRAE</code>\r
4350                           <scientific_name>Pyrobaculum aerophilum</scientific_name>\r
4351                           <rank>species</rank>\r
4352                         </taxonomy>\r
4353                       </clade>\r
4354                     </clade>\r
4355                     <clade>\r
4356                       <name>a_70</name>\r
4357                       <clade>\r
4358                         <taxonomy>\r
4359                           <id provider="uniprot">384616</id>\r
4360                           <code>PYRIL</code>\r
4361                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>\r
4362                         </taxonomy>\r
4363                       </clade>\r
4364                       <clade>\r
4365                         <taxonomy>\r
4366                           <id provider="uniprot">444157</id>\r
4367                           <code>THENV</code>\r
4368                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>\r
4369                         </taxonomy>\r
4370                       </clade>\r
4371                     </clade>\r
4372                   </clade>\r
4373                   <clade>\r
4374                     <taxonomy>\r
4375                       <id provider="uniprot">397948</id>\r
4376                       <code>CALMQ</code>\r
4377                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>\r
4378                     </taxonomy>\r
4379                   </clade>\r
4380                 </clade>\r
4381                 <clade>\r
4382                   <name>a_80</name>\r
4383                   <taxonomy>\r
4384                     <id provider="uniprot">118883</id>\r
4385                     <scientific_name>Sulfolobaceae</scientific_name>\r
4386                     <rank>family</rank>\r
4387                   </taxonomy>\r
4388                   <clade>\r
4389                     <name>a_78</name>\r
4390                     <taxonomy>\r
4391                       <id provider="uniprot">2284</id>\r
4392                       <scientific_name>Sulfolobus</scientific_name>\r
4393                       <rank>genus</rank>\r
4394                     </taxonomy>\r
4395                     <clade>\r
4396                       <name>a_76</name>\r
4397                       <clade>\r
4398                         <taxonomy>\r
4399                           <id provider="uniprot">2285</id>\r
4400                           <code>SULAC</code>\r
4401                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>\r
4402                           <rank>species</rank>\r
4403                         </taxonomy>\r
4404                       </clade>\r
4405                       <clade>\r
4406                         <taxonomy>\r
4407                           <id provider="uniprot">273063</id>\r
4408                           <code>SULTO</code>\r
4409                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>\r
4410                         </taxonomy>\r
4411                       </clade>\r
4412                     </clade>\r
4413                     <clade>\r
4414                       <taxonomy>\r
4415                         <id provider="uniprot">2287</id>\r
4416                         <code>SULSO</code>\r
4417                         <scientific_name>Sulfolobus solfataricus</scientific_name>\r
4418                         <rank>species</rank>\r
4419                       </taxonomy>\r
4420                     </clade>\r
4421                   </clade>\r
4422                   <clade>\r
4423                     <taxonomy>\r
4424                       <id provider="uniprot">399549</id>\r
4425                       <code>METS5</code>\r
4426                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>\r
4427                     </taxonomy>\r
4428                   </clade>\r
4429                 </clade>\r
4430               </clade>\r
4431               <clade>\r
4432                 <taxonomy>\r
4433                   <id provider="uniprot">56636</id>\r
4434                   <code>AERPE</code>\r
4435                   <scientific_name>Aeropyrum pernix</scientific_name>\r
4436                   <rank>species</rank>\r
4437                 </taxonomy>\r
4438               </clade>\r
4439             </clade>\r
4440             <clade>\r
4441               <name>a_90</name>\r
4442               <clade>\r
4443                 <name>a_88</name>\r
4444                 <clade>\r
4445                   <name>a_86</name>\r
4446                   <clade>\r
4447                     <taxonomy>\r
4448                       <id provider="uniprot">399550</id>\r
4449                       <code>STAMF</code>\r
4450                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>\r
4451                     </taxonomy>\r
4452                   </clade>\r
4453                   <clade>\r
4454                     <taxonomy>\r
4455                       <id provider="uniprot">368408</id>\r
4456                       <code>THEPD</code>\r
4457                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>\r
4458                     </taxonomy>\r
4459                   </clade>\r
4460                 </clade>\r
4461                 <clade>\r
4462                   <taxonomy>\r
4463                     <id provider="uniprot">415426</id>\r
4464                     <code>HYPBU</code>\r
4465                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>\r
4466                   </taxonomy>\r
4467                 </clade>\r
4468               </clade>\r
4469               <clade>\r
4470                 <taxonomy>\r
4471                   <id provider="uniprot">453591</id>\r
4472                   <code>IGNH4</code>\r
4473                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>\r
4474                 </taxonomy>\r
4475               </clade>\r
4476             </clade>\r
4477           </clade>\r
4478           <clade>\r
4479             <taxonomy>\r
4480               <id provider="uniprot">374847</id>\r
4481               <code>KORCO</code>\r
4482               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>\r
4483             </taxonomy>\r
4484           </clade>\r
4485         </clade>\r
4486       </clade>\r
4487     </clade>\r
4488     <clade>\r
4489       <taxonomy>\r
4490         <id provider="uniprot">2</id>\r
4491         <scientific_name>Bacteria</scientific_name>\r
4492         <rank>superkingdom</rank>\r
4493       </taxonomy>\r
4494       <clade>\r
4495         <name>b_278</name>\r
4496         <clade>\r
4497           <name>b_268</name>\r
4498           <clade>\r
4499             <name>b_226</name>\r
4500             <clade>\r
4501               <name>b_200</name>\r
4502               <clade>\r
4503                 <name>b_194</name>\r
4504                 <clade>\r
4505                   <name>b_104</name>\r
4506                   <clade>\r
4507                     <name>b_80</name>\r
4508                     <clade>\r
4509                       <taxonomy>\r
4510                         <id provider="uniprot">1224</id>\r
4511                         <scientific_name>Proteobacteria</scientific_name>\r
4512                         <rank>phylum</rank>\r
4513                       </taxonomy>\r
4514                       <clade>\r
4515                         <name>b_52</name>\r
4516                         <clade>\r
4517                           <name>b_44</name>\r
4518                           <clade>\r
4519                             <name>b_30</name>\r
4520                             <clade>\r
4521                               <name>b_24</name>\r
4522                               <taxonomy>\r
4523                                 <id provider="uniprot">1236</id>\r
4524                                 <scientific_name>Gammaproteobacteria</scientific_name>\r
4525                                 <rank>class</rank>\r
4526                               </taxonomy>\r
4527                               <clade>\r
4528                                 <name>b_16</name>\r
4529                                 <clade>\r
4530                                   <name>b_10</name>\r
4531                                   <taxonomy>\r
4532                                     <id provider="uniprot">543</id>\r
4533                                     <scientific_name>Enterobacteriaceae</scientific_name>\r
4534                                     <rank>family</rank>\r
4535                                   </taxonomy>\r
4536                                   <clade>\r
4537                                     <name>b_8</name>\r
4538                                     <clade>\r
4539                                       <name>b_6</name>\r
4540                                       <clade>\r
4541                                         <name>b_4</name>\r
4542                                         <clade>\r
4543                                           <name>b_2</name>\r
4544                                           <taxonomy>\r
4545                                             <id provider="uniprot">561</id>\r
4546                                             <scientific_name>Escherichia</scientific_name>\r
4547                                             <rank>genus</rank>\r
4548                                           </taxonomy>\r
4549                                           <clade>\r
4550                                             <taxonomy>\r
4551                                               <id provider="uniprot">83333</id>\r
4552                                               <code>ECOLI</code>\r
4553                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>\r
4554                                             </taxonomy>\r
4555                                           </clade>\r
4556                                           <clade>\r
4557                                             <taxonomy>\r
4558                                               <id provider="uniprot">83334</id>\r
4559                                               <code>ECO57</code>\r
4560                                               <scientific_name>Escherichia coli O157:H7</scientific_name>\r
4561                                             </taxonomy>\r
4562                                           </clade>\r
4563                                         </clade>\r
4564                                         <clade>\r
4565                                           <taxonomy>\r
4566                                             <id provider="uniprot">623</id>\r
4567                                             <code>SHIFL</code>\r
4568                                             <scientific_name>Shigella flexneri</scientific_name>\r
4569                                             <rank>species</rank>\r
4570                                           </taxonomy>\r
4571                                         </clade>\r
4572                                       </clade>\r
4573                                       <clade>\r
4574                                         <taxonomy>\r
4575                                           <id provider="uniprot">90371</id>\r
4576                                           <code>SALTY</code>\r
4577                                           <scientific_name>Salmonella typhimurium</scientific_name>\r
4578                                         </taxonomy>\r
4579                                       </clade>\r
4580                                     </clade>\r
4581                                     <clade>\r
4582                                       <taxonomy>\r
4583                                         <id provider="uniprot">632</id>\r
4584                                         <code>YERPE</code>\r
4585                                         <scientific_name>Yersinia pestis</scientific_name>\r
4586                                         <rank>species</rank>\r
4587                                       </taxonomy>\r
4588                                     </clade>\r
4589                                   </clade>\r
4590                                   <clade>\r
4591                                     <taxonomy>\r
4592                                       <id provider="uniprot">29488</id>\r
4593                                       <code>PHOLU</code>\r
4594                                       <scientific_name>Photorhabdus luminescens</scientific_name>\r
4595                                       <synonym>Xenorhabdus luminescens</synonym>\r
4596                                       <rank>species</rank>\r
4597                                     </taxonomy>\r
4598                                   </clade>\r
4599                                 </clade>\r
4600                                 <clade>\r
4601                                   <name>b_15</name>\r
4602                                   <clade>\r
4603                                     <name>b_13</name>\r
4604                                     <taxonomy>\r
4605                                       <id provider="uniprot">641</id>\r
4606                                       <scientific_name>Vibrionaceae</scientific_name>\r
4607                                       <rank>family</rank>\r
4608                                     </taxonomy>\r
4609                                     <clade>\r
4610                                       <taxonomy>\r
4611                                         <id provider="uniprot">74109</id>\r
4612                                         <code>PHOPR</code>\r
4613                                         <scientific_name>Photobacterium profundum</scientific_name>\r
4614                                         <synonym>Photobacterium sp. (strain SS9)</synonym>\r
4615                                         <rank>species</rank>\r
4616                                       </taxonomy>\r
4617                                     </clade>\r
4618                                     <clade>\r
4619                                       <taxonomy>\r
4620                                         <id provider="uniprot">666</id>\r
4621                                         <code>VIBCH</code>\r
4622                                         <scientific_name>Vibrio cholerae</scientific_name>\r
4623                                         <rank>species</rank>\r
4624                                       </taxonomy>\r
4625                                     </clade>\r
4626                                   </clade>\r
4627                                   <clade>\r
4628                                     <taxonomy>\r
4629                                       <id provider="uniprot">318161</id>\r
4630                                       <code>SHEDO</code>\r
4631                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>\r
4632                                     </taxonomy>\r
4633                                   </clade>\r
4634                                 </clade>\r
4635                               </clade>\r
4636                               <clade>\r
4637                                 <name>b_23</name>\r
4638                                 <clade>\r
4639                                   <name>b_21</name>\r
4640                                   <taxonomy>\r
4641                                     <id provider="uniprot">286</id>\r
4642                                     <scientific_name>Pseudomonas</scientific_name>\r
4643                                     <rank>genus</rank>\r
4644                                   </taxonomy>\r
4645                                   <clade>\r
4646                                     <name>b_19</name>\r
4647                                     <clade>\r
4648                                       <taxonomy>\r
4649                                         <id provider="uniprot">220664</id>\r
4650                                         <code>PSEF5</code>\r
4651                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>\r
4652                                       </taxonomy>\r
4653                                     </clade>\r
4654                                     <clade>\r
4655                                       <taxonomy>\r
4656                                         <id provider="uniprot">205922</id>\r
4657                                         <code>PSEPF</code>\r
4658                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>\r
4659                                       </taxonomy>\r
4660                                     </clade>\r
4661                                   </clade>\r
4662                                   <clade>\r
4663                                     <taxonomy>\r
4664                                       <id provider="uniprot">287</id>\r
4665                                       <code>PSEAE</code>\r
4666                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>\r
4667                                       <rank>species</rank>\r
4668                                     </taxonomy>\r
4669                                   </clade>\r
4670                                 </clade>\r
4671                                 <clade>\r
4672                                   <taxonomy>\r
4673                                     <id provider="uniprot">290398</id>\r
4674                                     <code>CHRSD</code>\r
4675                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>\r
4676                                   </taxonomy>\r
4677                                 </clade>\r
4678                               </clade>\r
4679                             </clade>\r
4680                             <clade>\r
4681                               <name>b_29</name>\r
4682                               <taxonomy>\r
4683                                 <id provider="uniprot">28216</id>\r
4684                                 <scientific_name>Betaproteobacteria</scientific_name>\r
4685                                 <rank>class</rank>\r
4686                               </taxonomy>\r
4687                               <clade>\r
4688                                 <taxonomy>\r
4689                                   <id provider="uniprot">159087</id>\r
4690                                   <code>DECAR</code>\r
4691                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>\r
4692                                 </taxonomy>\r
4693                               </clade>\r
4694                               <clade>\r
4695                                 <taxonomy>\r
4696                                   <id provider="uniprot">266264</id>\r
4697                                   <code>RALME</code>\r
4698                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>\r
4699                                 </taxonomy>\r
4700                               </clade>\r
4701                             </clade>\r
4702                           </clade>\r
4703                           <clade>\r
4704                             <name>b_43</name>\r
4705                             <clade>\r
4706                               <name>b_41</name>\r
4707                               <clade>\r
4708                                 <name>b_35</name>\r
4709                                 <taxonomy>\r
4710                                   <id provider="uniprot">28216</id>\r
4711                                   <scientific_name>Betaproteobacteria</scientific_name>\r
4712                                   <rank>class</rank>\r
4713                                 </taxonomy>\r
4714                                 <clade>\r
4715                                   <name>b_33</name>\r
4716                                   <taxonomy>\r
4717                                     <id provider="uniprot">206379</id>\r
4718                                     <scientific_name>Nitrosomonadaceae</scientific_name>\r
4719                                     <rank>family</rank>\r
4720                                   </taxonomy>\r
4721                                   <clade>\r
4722                                     <taxonomy>\r
4723                                       <id provider="uniprot">915</id>\r
4724                                       <code>NITEU</code>\r
4725                                       <scientific_name>Nitrosomonas europaea</scientific_name>\r
4726                                       <rank>species</rank>\r
4727                                     </taxonomy>\r
4728                                   </clade>\r
4729                                   <clade>\r
4730                                     <taxonomy>\r
4731                                       <id provider="uniprot">323848</id>\r
4732                                       <code>NITMU</code>\r
4733                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>\r
4734                                     </taxonomy>\r
4735                                   </clade>\r
4736                                 </clade>\r
4737                                 <clade>\r
4738                                   <taxonomy>\r
4739                                     <id provider="uniprot">36861</id>\r
4740                                     <code>THIDE</code>\r
4741                                     <scientific_name>Thiobacillus denitrificans</scientific_name>\r
4742                                     <rank>species</rank>\r
4743                                   </taxonomy>\r
4744                                 </clade>\r
4745                               </clade>\r
4746                               <clade>\r
4747                                 <name>b_40</name>\r
4748                                 <taxonomy>\r
4749                                   <id provider="uniprot">135613</id>\r
4750                                   <scientific_name>Chromatiales</scientific_name>\r
4751                                   <rank>order</rank>\r
4752                                 </taxonomy>\r
4753                                 <clade>\r
4754                                   <name>b_38</name>\r
4755                                   <taxonomy>\r
4756                                     <id provider="uniprot">72276</id>\r
4757                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>\r
4758                                     <common_name>purple sulfur bacteria</common_name>\r
4759                                     <rank>family</rank>\r
4760                                   </taxonomy>\r
4761                                   <clade>\r
4762                                     <taxonomy>\r
4763                                       <id provider="uniprot">187272</id>\r
4764                                       <code>ALHEH</code>\r
4765                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>\r
4766                                     </taxonomy>\r
4767                                   </clade>\r
4768                                   <clade>\r
4769                                     <taxonomy>\r
4770                                       <id provider="uniprot">349124</id>\r
4771                                       <code>HALHL</code>\r
4772                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>\r
4773                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>\r
4774                                     </taxonomy>\r
4775                                   </clade>\r
4776                                 </clade>\r
4777                                 <clade>\r
4778                                   <taxonomy>\r
4779                                     <id provider="uniprot">323261</id>\r
4780                                     <code>NITOC</code>\r
4781                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>\r
4782                                   </taxonomy>\r
4783                                 </clade>\r
4784                               </clade>\r
4785                             </clade>\r
4786                             <clade>\r
4787                               <taxonomy>\r
4788                                 <id provider="uniprot">317025</id>\r
4789                                 <code>THICR</code>\r
4790                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>\r
4791                               </taxonomy>\r
4792                             </clade>\r
4793                           </clade>\r
4794                         </clade>\r
4795                         <clade>\r
4796                           <name>b_51</name>\r
4797                           <taxonomy>\r
4798                             <id provider="uniprot">1236</id>\r
4799                             <scientific_name>Gammaproteobacteria</scientific_name>\r
4800                             <rank>class</rank>\r
4801                           </taxonomy>\r
4802                           <clade>\r
4803                             <name>b_47</name>\r
4804                             <clade>\r
4805                               <taxonomy>\r
4806                                 <id provider="uniprot">135577</id>\r
4807                                 <code>IDILO</code>\r
4808                                 <scientific_name>Idiomarina loihiensis</scientific_name>\r
4809                                 <rank>species</rank>\r
4810                               </taxonomy>\r
4811                             </clade>\r
4812                             <clade>\r
4813                               <taxonomy>\r
4814                                 <id provider="uniprot">446</id>\r
4815                                 <code>LEGPN</code>\r
4816                                 <scientific_name>Legionella pneumophila</scientific_name>\r
4817                                 <rank>species</rank>\r
4818                               </taxonomy>\r
4819                             </clade>\r
4820                           </clade>\r
4821                           <clade>\r
4822                             <name>b_50</name>\r
4823                             <taxonomy>\r
4824                               <id provider="uniprot">32033</id>\r
4825                               <scientific_name>Xanthomonadaceae</scientific_name>\r
4826                               <rank>family</rank>\r
4827                             </taxonomy>\r
4828                             <clade>\r
4829                               <taxonomy>\r
4830                                 <id provider="uniprot">92829</id>\r
4831                                 <code>XANAC</code>\r
4832                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>\r
4833                                 <common_name>Citrus canker</common_name>\r
4834                               </taxonomy>\r
4835                             </clade>\r
4836                             <clade>\r
4837                               <taxonomy>\r
4838                                 <id provider="uniprot">183190</id>\r
4839                                 <code>XYLFT</code>\r
4840                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>\r
4841                               </taxonomy>\r
4842                             </clade>\r
4843                           </clade>\r
4844                         </clade>\r
4845                       </clade>\r
4846                       <clade>\r
4847                         <name>b_71</name>\r
4848                         <taxonomy>\r
4849                           <id provider="uniprot">28211</id>\r
4850                           <scientific_name>Alphaproteobacteria</scientific_name>\r
4851                           <rank>class</rank>\r
4852                         </taxonomy>\r
4853                         <clade>\r
4854                           <name>b_67</name>\r
4855                           <clade>\r
4856                             <name>b_65</name>\r
4857                             <clade>\r
4858                               <name>b_61</name>\r
4859                               <taxonomy>\r
4860                                 <id provider="uniprot">356</id>\r
4861                                 <scientific_name>Rhizobiales</scientific_name>\r
4862                                 <rank>order</rank>\r
4863                               </taxonomy>\r
4864                               <clade>\r
4865                                 <name>b_57</name>\r
4866                                 <taxonomy>\r
4867                                   <id provider="uniprot">227290</id>\r
4868                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>\r
4869                                 </taxonomy>\r
4870                                 <clade>\r
4871                                   <taxonomy>\r
4872                                     <id provider="uniprot">176299</id>\r
4873                                     <code>AGRT5</code>\r
4874                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>\r
4875                                   </taxonomy>\r
4876                                 </clade>\r
4877                                 <clade>\r
4878                                   <taxonomy>\r
4879                                     <id provider="uniprot">347834</id>\r
4880                                     <code>RHIEC</code>\r
4881                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>\r
4882                                   </taxonomy>\r
4883                                 </clade>\r
4884                               </clade>\r
4885                               <clade>\r
4886                                 <name>b_60</name>\r
4887                                 <taxonomy>\r
4888                                   <id provider="uniprot">41294</id>\r
4889                                   <scientific_name>Bradyrhizobiaceae</scientific_name>\r
4890                                   <rank>family</rank>\r
4891                                 </taxonomy>\r
4892                                 <clade>\r
4893                                   <taxonomy>\r
4894                                     <id provider="uniprot">375</id>\r
4895                                     <code>BRAJA</code>\r
4896                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>\r
4897                                     <rank>species</rank>\r
4898                                   </taxonomy>\r
4899                                 </clade>\r
4900                                 <clade>\r
4901                                   <taxonomy>\r
4902                                     <id provider="uniprot">395960</id>\r
4903                                     <code>RHOPT</code>\r
4904                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>\r
4905                                   </taxonomy>\r
4906                                 </clade>\r
4907                               </clade>\r
4908                             </clade>\r
4909                             <clade>\r
4910                               <name>b_64</name>\r
4911                               <taxonomy>\r
4912                                 <id provider="uniprot">31989</id>\r
4913                                 <scientific_name>Rhodobacteraceae</scientific_name>\r
4914                                 <rank>family</rank>\r
4915                               </taxonomy>\r
4916                               <clade>\r
4917                                 <taxonomy>\r
4918                                   <id provider="uniprot">349101</id>\r
4919                                   <code>RHOS1</code>\r
4920                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>\r
4921                                 </taxonomy>\r
4922                               </clade>\r
4923                               <clade>\r
4924                                 <taxonomy>\r
4925                                   <id provider="uniprot">375451</id>\r
4926                                   <code>ROSDO</code>\r
4927                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>\r
4928                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>\r
4929                                   <synonym>Roseobacter denitrificans</synonym>\r
4930                                 </taxonomy>\r
4931                               </clade>\r
4932                             </clade>\r
4933                           </clade>\r
4934                           <clade>\r
4935                             <taxonomy>\r
4936                               <id provider="uniprot">155892</id>\r
4937                               <code>CAUCR</code>\r
4938                               <scientific_name>Caulobacter crescentus</scientific_name>\r
4939                               <synonym>Caulobacter vibrioides</synonym>\r
4940                               <rank>species</rank>\r
4941                             </taxonomy>\r
4942                           </clade>\r
4943                         </clade>\r
4944                         <clade>\r
4945                           <name>b_70</name>\r
4946                           <taxonomy>\r
4947                             <id provider="uniprot">204441</id>\r
4948                             <scientific_name>Rhodospirillales</scientific_name>\r
4949                             <rank>order</rank>\r
4950                           </taxonomy>\r
4951                           <clade>\r
4952                             <taxonomy>\r
4953                               <id provider="uniprot">524</id>\r
4954                               <code>ACICY</code>\r
4955                               <scientific_name>Acidiphilium cryptum</scientific_name>\r
4956                               <rank>species</rank>\r
4957                             </taxonomy>\r
4958                           </clade>\r
4959                           <clade>\r
4960                             <taxonomy>\r
4961                               <id provider="uniprot">1085</id>\r
4962                               <code>RHORU</code>\r
4963                               <scientific_name>Rhodospirillum rubrum</scientific_name>\r
4964                               <rank>species</rank>\r
4965                             </taxonomy>\r
4966                           </clade>\r
4967                         </clade>\r
4968                       </clade>\r
4969                     </clade>\r
4970                     <clade>\r
4971                       <name>b_79</name>\r
4972                       <clade>\r
4973                         <name>b_77</name>\r
4974                         <taxonomy>\r
4975                           <id provider="uniprot">1224</id>\r
4976                           <scientific_name>Proteobacteria</scientific_name>\r
4977                           <rank>phylum</rank>\r
4978                         </taxonomy>\r
4979                         <clade>\r
4980                           <name>b_75</name>\r
4981                           <taxonomy>\r
4982                             <id provider="uniprot">712</id>\r
4983                             <scientific_name>Pasteurellaceae</scientific_name>\r
4984                             <rank>family</rank>\r
4985                           </taxonomy>\r
4986                           <clade>\r
4987                             <taxonomy>\r
4988                               <id provider="uniprot">727</id>\r
4989                               <code>HAEIN</code>\r
4990                               <scientific_name>Haemophilus influenzae</scientific_name>\r
4991                               <rank>species</rank>\r
4992                             </taxonomy>\r
4993                           </clade>\r
4994                           <clade>\r
4995                             <taxonomy>\r
4996                               <id provider="uniprot">747</id>\r
4997                               <code>PASMU</code>\r
4998                               <scientific_name>Pasteurella multocida</scientific_name>\r
4999                               <rank>species</rank>\r
5000                             </taxonomy>\r
5001                           </clade>\r
5002                         </clade>\r
5003                         <clade>\r
5004                           <taxonomy>\r
5005                             <id provider="uniprot">487</id>\r
5006                             <code>NEIME</code>\r
5007                             <scientific_name>Neisseria meningitidis</scientific_name>\r
5008                             <rank>species</rank>\r
5009                           </taxonomy>\r
5010                         </clade>\r
5011                       </clade>\r
5012                       <clade>\r
5013                         <taxonomy>\r
5014                           <id provider="uniprot">905</id>\r
5015                           <code>ACIFE</code>\r
5016                           <scientific_name>Acidaminococcus fermentans</scientific_name>\r
5017                           <rank>species</rank>\r
5018                         </taxonomy>\r
5019                       </clade>\r
5020                     </clade>\r
5021                   </clade>\r
5022                   <clade>\r
5023                     <name>b_103</name>\r
5024                     <clade>\r
5025                       <name>b_91</name>\r
5026                       <taxonomy>\r
5027                         <id provider="uniprot">28221</id>\r
5028                         <scientific_name>Deltaproteobacteria</scientific_name>\r
5029                         <rank>class</rank>\r
5030                       </taxonomy>\r
5031                       <clade>\r
5032                         <name>b_87</name>\r
5033                         <clade>\r
5034                           <name>b_83</name>\r
5035                           <clade>\r
5036                             <taxonomy>\r
5037                               <id provider="uniprot">84980</id>\r
5038                               <code>DESPS</code>\r
5039                               <scientific_name>Desulfotalea psychrophila</scientific_name>\r
5040                               <rank>species</rank>\r
5041                             </taxonomy>\r
5042                           </clade>\r
5043                           <clade>\r
5044                             <taxonomy>\r
5045                               <id provider="uniprot">876</id>\r
5046                               <code>DESDE</code>\r
5047                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>\r
5048                               <rank>species</rank>\r
5049                             </taxonomy>\r
5050                           </clade>\r
5051                         </clade>\r
5052                         <clade>\r
5053                           <taxonomy>\r
5054                             <id provider="uniprot">56780</id>\r
5055                             <code>SYNAS</code>\r
5056                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>\r
5057                           </taxonomy>\r
5058                         </clade>\r
5059                       </clade>\r
5060                       <clade>\r
5061                         <name>b_90</name>\r
5062                         <taxonomy>\r
5063                           <id provider="uniprot">28231</id>\r
5064                           <scientific_name>Geobacter</scientific_name>\r
5065                           <rank>genus</rank>\r
5066                         </taxonomy>\r
5067                         <clade>\r
5068                           <taxonomy>\r
5069                             <id provider="uniprot">28232</id>\r
5070                             <code>GEOME</code>\r
5071                             <scientific_name>Geobacter metallireducens</scientific_name>\r
5072                             <rank>species</rank>\r
5073                           </taxonomy>\r
5074                         </clade>\r
5075                         <clade>\r
5076                           <taxonomy>\r
5077                             <id provider="uniprot">35554</id>\r
5078                             <code>GEOSL</code>\r
5079                             <scientific_name>Geobacter sulfurreducens</scientific_name>\r
5080                             <rank>species</rank>\r
5081                           </taxonomy>\r
5082                         </clade>\r
5083                       </clade>\r
5084                     </clade>\r
5085                     <clade>\r
5086                       <name>b_102</name>\r
5087                       <clade>\r
5088                         <name>b_98</name>\r
5089                         <clade>\r
5090                           <name>b_94</name>\r
5091                           <taxonomy>\r
5092                             <id provider="uniprot">31</id>\r
5093                             <scientific_name>Myxococcaceae</scientific_name>\r
5094                             <rank>family</rank>\r
5095                           </taxonomy>\r
5096                           <clade>\r
5097                             <taxonomy>\r
5098                               <id provider="uniprot">290397</id>\r
5099                               <code>ANADE</code>\r
5100                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>\r
5101                             </taxonomy>\r
5102                           </clade>\r
5103                           <clade>\r
5104                             <taxonomy>\r
5105                               <id provider="uniprot">34</id>\r
5106                               <code>MYXXA</code>\r
5107                               <scientific_name>Myxococcus xanthus</scientific_name>\r
5108                               <rank>species</rank>\r
5109                             </taxonomy>\r
5110                           </clade>\r
5111                         </clade>\r
5112                         <clade>\r
5113                           <name>b_97</name>\r
5114                           <taxonomy>\r
5115                             <id provider="uniprot">57723</id>\r
5116                             <scientific_name>Acidobacteria</scientific_name>\r
5117                             <rank>phylum</rank>\r
5118                           </taxonomy>\r
5119                           <clade>\r
5120                             <taxonomy>\r
5121                               <id provider="uniprot">204669</id>\r
5122                               <code>ACIBL</code>\r
5123                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>\r
5124                             </taxonomy>\r
5125                           </clade>\r
5126                           <clade>\r
5127                             <taxonomy>\r
5128                               <id provider="uniprot">332163</id>\r
5129                               <code>SOLUS</code>\r
5130                               <scientific_name>Solibacter usitatus</scientific_name>\r
5131                               <rank>species</rank>\r
5132                             </taxonomy>\r
5133                           </clade>\r
5134                         </clade>\r
5135                       </clade>\r
5136                       <clade>\r
5137                         <taxonomy>\r
5138                           <id provider="uniprot">265606</id>\r
5139                           <code>RHOBA</code>\r
5140                           <scientific_name>Rhodopirellula baltica</scientific_name>\r
5141                           <rank>species</rank>\r
5142                         </taxonomy>\r
5143                       </clade>\r
5144                     </clade>\r
5145                   </clade>\r
5146                 </clade>\r
5147                 <clade>\r
5148                   <name>b_193</name>\r
5149                   <clade>\r
5150                     <name>b_163</name>\r
5151                     <clade>\r
5152                       <name>b_133</name>\r
5153                       <clade>\r
5154                         <name>Chloroflexi &amp; Actinobacteria</name>\r
5155                         <clade>\r
5156                           <taxonomy>\r
5157                             <id provider="uniprot">200795</id>\r
5158                             <scientific_name>Chloroflexi</scientific_name>\r
5159                             <common_name>GNS bacteria</common_name>\r
5160                             <synonym>Thermomicrobia</synonym>\r
5161                             <rank>phylum</rank>\r
5162                           </taxonomy>\r
5163                           <clade>\r
5164                             <taxonomy>\r
5165                               <id provider="uniprot">32061</id>\r
5166                               <scientific_name>Chloroflexi (class)</scientific_name>\r
5167                               <synonym>Chloroflecales</synonym>\r
5168                               <synonym>Chloroflexus/Deinococcus group</synonym>\r
5169                               <rank>class</rank>\r
5170                             </taxonomy>\r
5171                             <clade>\r
5172                               <name>b_122</name>\r
5173                               <taxonomy>\r
5174                                 <id provider="uniprot">1106</id>\r
5175                                 <scientific_name>Chloroflexaceae</scientific_name>\r
5176                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>\r
5177                                 <rank>family</rank>\r
5178                               </taxonomy>\r
5179                               <clade>\r
5180                                 <taxonomy>\r
5181                                   <id provider="uniprot">1108</id>\r
5182                                   <code>CHLAU</code>\r
5183                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>\r
5184                                   <rank>species</rank>\r
5185                                 </taxonomy>\r
5186                               </clade>\r
5187                               <clade>\r
5188                                 <taxonomy>\r
5189                                   <id provider="uniprot">383372</id>\r
5190                                   <code>ROSCS</code>\r
5191                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>\r
5192                                   <rank>species</rank>\r
5193                                 </taxonomy>\r
5194                               </clade>\r
5195                             </clade>\r
5196                             <clade>\r
5197                               <taxonomy>\r
5198                                 <id provider="uniprot">65</id>\r
5199                                 <code>HERAU</code>\r
5200                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>\r
5201                                 <synonym>Herpetosiphon giganteus</synonym>\r
5202                                 <rank>species</rank>\r
5203                               </taxonomy>\r
5204                             </clade>\r
5205                           </clade>\r
5206                           <clade>\r
5207                             <taxonomy>\r
5208                               <id provider="uniprot">479434</id>\r
5209                               <code>SPHTD</code>\r
5210                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>\r
5211                               <rank>strain</rank>\r
5212                             </taxonomy>\r
5213                           </clade>\r
5214                         </clade>\r
5215                         <clade>\r
5216                           <taxonomy>\r
5217                             <id provider="uniprot">201174</id>\r
5218                             <scientific_name>Actinobacteria</scientific_name>\r
5219                             <rank>phylum</rank>\r
5220                           </taxonomy>\r
5221                           <clade>\r
5222                             <taxonomy>\r
5223                               <id provider="uniprot">2037</id>\r
5224                               <scientific_name>Actinomycetales</scientific_name>\r
5225                               <rank>order</rank>\r
5226                             </taxonomy>\r
5227                             <clade>\r
5228                               <name>b_115</name>\r
5229                               <clade>\r
5230                                 <taxonomy>\r
5231                                   <id provider="uniprot">266940</id>\r
5232                                   <code>KINRD</code>\r
5233                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>\r
5234                                 </taxonomy>\r
5235                               </clade>\r
5236                               <clade>\r
5237                                 <taxonomy>\r
5238                                   <id provider="uniprot">1032480</id>\r
5239                                   <code>MICPN</code>\r
5240                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>\r
5241                                   <common_name>Microlunatus phosphovorus NM-1</common_name>\r
5242                                   <rank>strain</rank>\r
5243                                 </taxonomy>\r
5244                               </clade>\r
5245                             </clade>\r
5246                             <clade>\r
5247                               <taxonomy>\r
5248                                 <id provider="uniprot">85007</id>\r
5249                                 <scientific_name>Corynebacterineae</scientific_name>\r
5250                                 <rank>suborder</rank>\r
5251                               </taxonomy>\r
5252                               <clade>\r
5253                                 <taxonomy>\r
5254                                   <id provider="uniprot">1763</id>\r
5255                                   <scientific_name>Mycobacterium</scientific_name>\r
5256                                   <rank>genus</rank>\r
5257                                 </taxonomy>\r
5258                                 <clade>\r
5259                                   <taxonomy>\r
5260                                     <id provider="uniprot">1769</id>\r
5261                                     <code>MYCLE</code>\r
5262                                     <scientific_name>Mycobacterium leprae</scientific_name>\r
5263                                     <rank>species</rank>\r
5264                                   </taxonomy>\r
5265                                 </clade>\r
5266                                 <clade>\r
5267                                   <taxonomy>\r
5268                                     <id provider="uniprot">1773</id>\r
5269                                     <code>MYCTU</code>\r
5270                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>\r
5271                                     <rank>species</rank>\r
5272                                   </taxonomy>\r
5273                                 </clade>\r
5274                               </clade>\r
5275                               <clade>\r
5276                                 <taxonomy>\r
5277                                   <id provider="uniprot">632772</id>\r
5278                                   <code>RHOOB</code>\r
5279                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>\r
5280                                   <rank>strain</rank>\r
5281                                 </taxonomy>\r
5282                               </clade>\r
5283                             </clade>\r
5284                           </clade>\r
5285                           <clade>\r
5286                             <taxonomy>\r
5287                               <id provider="uniprot">266117</id>\r
5288                               <code>RUBXD</code>\r
5289                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>\r
5290                             </taxonomy>\r
5291                           </clade>\r
5292                         </clade>\r
5293                       </clade>\r
5294                       <clade>\r
5295                         <name>b_132</name>\r
5296                         <taxonomy>\r
5297                           <id provider="uniprot">188787</id>\r
5298                           <scientific_name>Deinococci</scientific_name>\r
5299                           <rank>class</rank>\r
5300                         </taxonomy>\r
5301                         <clade>\r
5302                           <name>b_130</name>\r
5303                           <taxonomy>\r
5304                             <id provider="uniprot">1298</id>\r
5305                             <scientific_name>Deinococcus</scientific_name>\r
5306                             <rank>genus</rank>\r
5307                           </taxonomy>\r
5308                           <clade>\r
5309                             <taxonomy>\r
5310                               <id provider="uniprot">319795</id>\r
5311                               <code>DEIGD</code>\r
5312                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>\r
5313                             </taxonomy>\r
5314                           </clade>\r
5315                           <clade>\r
5316                             <taxonomy>\r
5317                               <id provider="uniprot">1299</id>\r
5318                               <code>DEIRA</code>\r
5319                               <scientific_name>Deinococcus radiodurans</scientific_name>\r
5320                               <rank>species</rank>\r
5321                             </taxonomy>\r
5322                           </clade>\r
5323                         </clade>\r
5324                         <clade>\r
5325                           <taxonomy>\r
5326                             <id provider="uniprot">274</id>\r
5327                             <code>THETH</code>\r
5328                             <scientific_name>Thermus thermophilus</scientific_name>\r
5329                             <rank>species</rank>\r
5330                           </taxonomy>\r
5331                         </clade>\r
5332                       </clade>\r
5333                     </clade>\r
5334                     <clade>\r
5335                       <name>b_162</name>\r
5336                       <taxonomy>\r
5337                         <id provider="uniprot">1117</id>\r
5338                         <scientific_name>Cyanobacteria</scientific_name>\r
5339                         <rank>phylum</rank>\r
5340                       </taxonomy>\r
5341                       <clade>\r
5342                         <name>b_154</name>\r
5343                         <clade>\r
5344                           <name>b_152</name>\r
5345                           <clade>\r
5346                             <name>b_146</name>\r
5347                             <clade>\r
5348                               <name>b_144</name>\r
5349                               <clade>\r
5350                                 <name>b_142</name>\r
5351                                 <clade>\r
5352                                   <name>b_138</name>\r
5353                                   <taxonomy>\r
5354                                     <id provider="uniprot">1162</id>\r
5355                                     <scientific_name>Nostocaceae</scientific_name>\r
5356                                     <rank>family</rank>\r
5357                                   </taxonomy>\r
5358                                   <clade>\r
5359                                     <name>b_136</name>\r
5360                                     <clade>\r
5361                                       <taxonomy>\r
5362                                         <id provider="uniprot">1172</id>\r
5363                                         <code>ANAVA</code>\r
5364                                         <scientific_name>Anabaena variabilis</scientific_name>\r
5365                                         <rank>species</rank>\r
5366                                       </taxonomy>\r
5367                                     </clade>\r
5368                                     <clade>\r
5369                                       <taxonomy>\r
5370                                         <id provider="uniprot">28072</id>\r
5371                                         <code>NOSS7</code>\r
5372                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>\r
5373                                         <rank>species</rank>\r
5374                                       </taxonomy>\r
5375                                     </clade>\r
5376                                   </clade>\r
5377                                   <clade>\r
5378                                     <taxonomy>\r
5379                                       <id provider="uniprot">63737</id>\r
5380                                       <code>NOSP7</code>\r
5381                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>\r
5382                                     </taxonomy>\r
5383                                   </clade>\r
5384                                 </clade>\r
5385                                 <clade>\r
5386                                   <taxonomy>\r
5387                                     <id provider="uniprot">155978</id>\r
5388                                     <code>ACAMR</code>\r
5389                                     <scientific_name>Acaryochloris marina</scientific_name>\r
5390                                     <rank>species</rank>\r
5391                                   </taxonomy>\r
5392                                 </clade>\r
5393                               </clade>\r
5394                               <clade>\r
5395                                 <taxonomy>\r
5396                                   <id provider="uniprot">449447</id>\r
5397                                   <code>MICAN</code>\r
5398                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>\r
5399                                 </taxonomy>\r
5400                               </clade>\r
5401                             </clade>\r
5402                             <clade>\r
5403                               <taxonomy>\r
5404                                 <id provider="uniprot">1206</id>\r
5405                                 <code>TRIER</code>\r
5406                                 <scientific_name>Trichodesmium erythraeum</scientific_name>\r
5407                                 <rank>species</rank>\r
5408                               </taxonomy>\r
5409                             </clade>\r
5410                           </clade>\r
5411                           <clade>\r
5412                             <name>b_149</name>\r
5413                             <taxonomy>\r
5414                               <id provider="uniprot">1118</id>\r
5415                               <scientific_name>Chroococcales</scientific_name>\r
5416                               <rank>order</rank>\r
5417                             </taxonomy>\r
5418                             <clade>\r
5419                               <taxonomy>\r
5420                                 <id provider="uniprot">32046</id>\r
5421                                 <code>SYNEL</code>\r
5422                                 <scientific_name>Synechococcus elongatus</scientific_name>\r
5423                                 <rank>species</rank>\r
5424                               </taxonomy>\r
5425                             </clade>\r
5426                             <clade>\r
5427                               <taxonomy>\r
5428                                 <id provider="uniprot">1148</id>\r
5429                                 <code>SYNY3</code>\r
5430                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>\r
5431                                 <rank>species</rank>\r
5432                               </taxonomy>\r
5433                             </clade>\r
5434                           </clade>\r
5435                         </clade>\r
5436                         <clade>\r
5437                           <taxonomy>\r
5438                             <id provider="uniprot">33072</id>\r
5439                             <code>GLOVI</code>\r
5440                             <scientific_name>Gloeobacter violaceus</scientific_name>\r
5441                             <rank>species</rank>\r
5442                           </taxonomy>\r
5443                         </clade>\r
5444                       </clade>\r
5445                       <clade>\r
5446                         <name>b_161</name>\r
5447                         <clade>\r
5448                           <name>b_159</name>\r
5449                           <taxonomy>\r
5450                             <id provider="uniprot">1218</id>\r
5451                             <scientific_name>Prochlorococcus</scientific_name>\r
5452                             <rank>genus</rank>\r
5453                           </taxonomy>\r
5454                           <clade>\r
5455                             <name>b_157</name>\r
5456                             <clade>\r
5457                               <taxonomy>\r
5458                                 <id provider="uniprot">1219</id>\r
5459                                 <code>PROMA</code>\r
5460                                 <scientific_name>Prochlorococcus marinus</scientific_name>\r
5461                                 <rank>species</rank>\r
5462                               </taxonomy>\r
5463                             </clade>\r
5464                             <clade>\r
5465                               <taxonomy>\r
5466                                 <id provider="uniprot">59919</id>\r
5467                                 <code>PROMP</code>\r
5468                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>\r
5469                               </taxonomy>\r
5470                             </clade>\r
5471                           </clade>\r
5472                           <clade>\r
5473                             <taxonomy>\r
5474                               <id provider="uniprot">74547</id>\r
5475                               <code>PROMM</code>\r
5476                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>\r
5477                             </taxonomy>\r
5478                           </clade>\r
5479                         </clade>\r
5480                         <clade>\r
5481                           <taxonomy>\r
5482                             <id provider="uniprot">64471</id>\r
5483                             <code>SYNS3</code>\r
5484                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>\r
5485                             <rank>species</rank>\r
5486                           </taxonomy>\r
5487                         </clade>\r
5488                       </clade>\r
5489                     </clade>\r
5490                   </clade>\r
5491                   <clade>\r
5492                     <name>b_192</name>\r
5493                     <clade>\r
5494                       <name>b_190</name>\r
5495                       <clade>\r
5496                         <name>b_178</name>\r
5497                         <clade>\r
5498                           <name>b_176</name>\r
5499                           <taxonomy>\r
5500                             <id provider="uniprot">191412</id>\r
5501                             <scientific_name>Chlorobiaceae</scientific_name>\r
5502                             <rank>family</rank>\r
5503                           </taxonomy>\r
5504                           <clade>\r
5505                             <name>b_170</name>\r
5506                             <clade>\r
5507                               <name>b_166</name>\r
5508                               <clade>\r
5509                                 <taxonomy>\r
5510                                   <id provider="uniprot">331678</id>\r
5511                                   <code>CHLPB</code>\r
5512                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>\r
5513                                 </taxonomy>\r
5514                               </clade>\r
5515                               <clade>\r
5516                                 <taxonomy>\r
5517                                   <id provider="uniprot">1102</id>\r
5518                                   <code>PROAE</code>\r
5519                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>\r
5520                                   <rank>species</rank>\r
5521                                 </taxonomy>\r
5522                               </clade>\r
5523                             </clade>\r
5524                             <clade>\r
5525                               <name>b_169</name>\r
5526                               <taxonomy>\r
5527                                 <id provider="uniprot">274493</id>\r
5528                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>\r
5529                               </taxonomy>\r
5530                               <clade>\r
5531                                 <taxonomy>\r
5532                                   <id provider="uniprot">1100</id>\r
5533                                   <code>PELLU</code>\r
5534                                   <scientific_name>Pelodictyon luteolum</scientific_name>\r
5535                                   <rank>species</rank>\r
5536                                 </taxonomy>\r
5537                               </clade>\r
5538                               <clade>\r
5539                                 <taxonomy>\r
5540                                   <id provider="uniprot">290318</id>\r
5541                                   <code>PROVI</code>\r
5542                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>\r
5543                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>\r
5544                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>\r
5545                                 </taxonomy>\r
5546                               </clade>\r
5547                             </clade>\r
5548                           </clade>\r
5549                           <clade>\r
5550                             <name>b_175</name>\r
5551                             <clade>\r
5552                               <name>b_173</name>\r
5553                               <taxonomy>\r
5554                                 <id provider="uniprot">256319</id>\r
5555                                 <scientific_name>Chlorobaculum</scientific_name>\r
5556                                 <rank>genus</rank>\r
5557                               </taxonomy>\r
5558                               <clade>\r
5559                                 <taxonomy>\r
5560                                   <id provider="uniprot">517417</id>\r
5561                                   <code>CHLP8</code>\r
5562                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>\r
5563                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>\r
5564                                 </taxonomy>\r
5565                               </clade>\r
5566                               <clade>\r
5567                                 <taxonomy>\r
5568                                   <id provider="uniprot">1097</id>\r
5569                                   <code>CHLTE</code>\r
5570                                   <scientific_name>Chlorobium tepidum</scientific_name>\r
5571                                   <rank>species</rank>\r
5572                                 </taxonomy>\r
5573                               </clade>\r
5574                             </clade>\r
5575                             <clade>\r
5576                               <taxonomy>\r
5577                                 <id provider="uniprot">340177</id>\r
5578                                 <code>CHLCH</code>\r
5579                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>\r
5580                               </taxonomy>\r
5581                             </clade>\r
5582                           </clade>\r
5583                         </clade>\r
5584                         <clade>\r
5585                           <taxonomy>\r
5586                             <id provider="uniprot">315277</id>\r
5587                             <code>CHLTA</code>\r
5588                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>\r
5589                           </taxonomy>\r
5590                         </clade>\r
5591                       </clade>\r
5592                       <clade>\r
5593                         <name>b_189</name>\r
5594                         <taxonomy>\r
5595                           <id provider="uniprot">976</id>\r
5596                           <scientific_name>Bacteroidetes</scientific_name>\r
5597                           <rank>phylum</rank>\r
5598                         </taxonomy>\r
5599                         <clade>\r
5600                           <name>b_183</name>\r
5601                           <clade>\r
5602                             <name>b_181</name>\r
5603                             <taxonomy>\r
5604                               <id provider="uniprot">49546</id>\r
5605                               <scientific_name>Flavobacteriaceae</scientific_name>\r
5606                               <rank>family</rank>\r
5607                             </taxonomy>\r
5608                             <clade>\r
5609                               <taxonomy>\r
5610                                 <id provider="uniprot">986</id>\r
5611                                 <code>FLAJO</code>\r
5612                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>\r
5613                                 <synonym>Cytophaga johnsonae</synonym>\r
5614                                 <rank>species</rank>\r
5615                               </taxonomy>\r
5616                             </clade>\r
5617                             <clade>\r
5618                               <taxonomy>\r
5619                                 <id provider="uniprot">411154</id>\r
5620                                 <code>GRAFK</code>\r
5621                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>\r
5622                               </taxonomy>\r
5623                             </clade>\r
5624                           </clade>\r
5625                           <clade>\r
5626                             <taxonomy>\r
5627                               <id provider="uniprot">269798</id>\r
5628                               <code>CYTH3</code>\r
5629                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>\r
5630                             </taxonomy>\r
5631                           </clade>\r
5632                         </clade>\r
5633                         <clade>\r
5634                           <name>b_188</name>\r
5635                           <taxonomy>\r
5636                             <id provider="uniprot">171549</id>\r
5637                             <scientific_name>Bacteroidales</scientific_name>\r
5638                             <rank>order</rank>\r
5639                           </taxonomy>\r
5640                           <clade>\r
5641                             <name>b_186</name>\r
5642                             <taxonomy>\r
5643                               <id provider="uniprot">816</id>\r
5644                               <scientific_name>Bacteroides</scientific_name>\r
5645                               <rank>genus</rank>\r
5646                             </taxonomy>\r
5647                             <clade>\r
5648                               <taxonomy>\r
5649                                 <id provider="uniprot">817</id>\r
5650                                 <code>BACFR</code>\r
5651                                 <scientific_name>Bacteroides fragilis</scientific_name>\r
5652                                 <rank>species</rank>\r
5653                               </taxonomy>\r
5654                             </clade>\r
5655                             <clade>\r
5656                               <taxonomy>\r
5657                                 <id provider="uniprot">818</id>\r
5658                                 <code>BACTN</code>\r
5659                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>\r
5660                                 <rank>species</rank>\r
5661                               </taxonomy>\r
5662                             </clade>\r
5663                           </clade>\r
5664                           <clade>\r
5665                             <taxonomy>\r
5666                               <id provider="uniprot">837</id>\r
5667                               <code>PORGI</code>\r
5668                               <scientific_name>Porphyromonas gingivalis</scientific_name>\r
5669                               <synonym>Bacteroides gingivalis</synonym>\r
5670                               <rank>species</rank>\r
5671                             </taxonomy>\r
5672                           </clade>\r
5673                         </clade>\r
5674                       </clade>\r
5675                     </clade>\r
5676                     <clade>\r
5677                       <taxonomy>\r
5678                         <id provider="uniprot">309807</id>\r
5679                         <code>SALRD</code>\r
5680                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>\r
5681                       </taxonomy>\r
5682                     </clade>\r
5683                   </clade>\r
5684                 </clade>\r
5685               </clade>\r
5686               <clade>\r
5687                 <name>b_199</name>\r
5688                 <clade>\r
5689                   <name>b_197</name>\r
5690                   <taxonomy>\r
5691                     <scientific_name>Verrucomicrobia</scientific_name>\r
5692                   </taxonomy>\r
5693                   <clade>\r
5694                     <taxonomy>\r
5695                       <id provider="uniprot">349741</id>\r
5696                       <code>AKKM8</code>\r
5697                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>\r
5698                     </taxonomy>\r
5699                   </clade>\r
5700                   <clade>\r
5701                     <taxonomy>\r
5702                       <id provider="uniprot">481448</id>\r
5703                       <code>METI4</code>\r
5704                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>\r
5705                       <synonym>Methylokorus infernorum (strain V4)</synonym>\r
5706                     </taxonomy>\r
5707                   </clade>\r
5708                 </clade>\r
5709                 <clade>\r
5710                   <taxonomy>\r
5711                     <id provider="uniprot">44275</id>\r
5712                     <code>LEPIC</code>\r
5713                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>\r
5714                   </taxonomy>\r
5715                 </clade>\r
5716               </clade>\r
5717             </clade>\r
5718             <clade>\r
5719               <name>b_225</name>\r
5720               <clade>\r
5721                 <name>b_219</name>\r
5722                 <taxonomy>\r
5723                   <id provider="uniprot">1239</id>\r
5724                   <scientific_name>Firmicutes</scientific_name>\r
5725                   <rank>phylum</rank>\r
5726                 </taxonomy>\r
5727                 <clade>\r
5728                   <name>b_213</name>\r
5729                   <clade>\r
5730                     <taxonomy>\r
5731                       <id provider="uniprot">1385</id>\r
5732                       <scientific_name>Bacillales</scientific_name>\r
5733                       <rank>order</rank>\r
5734                     </taxonomy>\r
5735                     <clade>\r
5736                       <taxonomy>\r
5737                         <id provider="uniprot">186817</id>\r
5738                         <scientific_name>Bacillaceae</scientific_name>\r
5739                         <rank>family</rank>\r
5740                       </taxonomy>\r
5741                       <clade>\r
5742                         <taxonomy>\r
5743                           <id provider="uniprot">1386</id>\r
5744                           <scientific_name>Bacillus</scientific_name>\r
5745                           <rank>genus</rank>\r
5746                         </taxonomy>\r
5747                         <clade>\r
5748                           <taxonomy>\r
5749                             <id provider="uniprot">86661</id>\r
5750                             <scientific_name>Bacillus cereus group</scientific_name>\r
5751                           </taxonomy>\r
5752                           <clade>\r
5753                             <taxonomy>\r
5754                               <id provider="uniprot">1392</id>\r
5755                               <code>BACAN</code>\r
5756                               <scientific_name>Bacillus anthracis</scientific_name>\r
5757                               <rank>species</rank>\r
5758                             </taxonomy>\r
5759                           </clade>\r
5760                           <clade>\r
5761                             <taxonomy>\r
5762                               <id provider="uniprot">572264</id>\r
5763                               <code>BACC3</code>\r
5764                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>\r
5765                               <rank>strain</rank>\r
5766                             </taxonomy>\r
5767                           </clade>\r
5768                         </clade>\r
5769                         <clade>\r
5770                           <taxonomy>\r
5771                             <id provider="uniprot">1423</id>\r
5772                             <code>BACSU</code>\r
5773                             <scientific_name>Bacillus subtilis</scientific_name>\r
5774                             <rank>species</rank>\r
5775                           </taxonomy>\r
5776                         </clade>\r
5777                       </clade>\r
5778                       <clade>\r
5779                         <name>b_206</name>\r
5780                         <clade>\r
5781                           <taxonomy>\r
5782                             <id provider="uniprot">86665</id>\r
5783                             <code>BACHD</code>\r
5784                             <scientific_name>Bacillus halodurans</scientific_name>\r
5785                             <rank>species</rank>\r
5786                           </taxonomy>\r
5787                         </clade>\r
5788                         <clade>\r
5789                           <taxonomy>\r
5790                             <id provider="uniprot">1462</id>\r
5791                             <code>GEOKA</code>\r
5792                             <scientific_name>Geobacillus kaustophilus</scientific_name>\r
5793                             <rank>species</rank>\r
5794                           </taxonomy>\r
5795                         </clade>\r
5796                       </clade>\r
5797                     </clade>\r
5798                     <clade>\r
5799                       <name>b_210</name>\r
5800                       <clade>\r
5801                         <taxonomy>\r
5802                           <id provider="uniprot">1639</id>\r
5803                           <code>LISMO</code>\r
5804                           <scientific_name>Listeria monocytogenes</scientific_name>\r
5805                           <rank>species</rank>\r
5806                         </taxonomy>\r
5807                       </clade>\r
5808                       <clade>\r
5809                         <taxonomy>\r
5810                           <id provider="uniprot">1280</id>\r
5811                           <code>STAAU</code>\r
5812                           <scientific_name>Staphylococcus aureus</scientific_name>\r
5813                           <rank>species</rank>\r
5814                         </taxonomy>\r
5815                       </clade>\r
5816                     </clade>\r
5817                   </clade>\r
5818                   <clade>\r
5819                     <taxonomy>\r
5820                       <id provider="uniprot">195103</id>\r
5821                       <code>CLOP1</code>\r
5822                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>\r
5823                     </taxonomy>\r
5824                   </clade>\r
5825                 </clade>\r
5826                 <clade>\r
5827                   <name>Clostridia</name>\r
5828                   <taxonomy>\r
5829                     <id provider="uniprot">186801</id>\r
5830                     <scientific_name>Clostridia</scientific_name>\r
5831                     <rank>class</rank>\r
5832                   </taxonomy>\r
5833                   <clade>\r
5834                     <name>b_218</name>\r
5835                     <clade>\r
5836                       <name>b_216</name>\r
5837                       <taxonomy>\r
5838                         <id provider="uniprot">186814</id>\r
5839                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>\r
5840                         <rank>family</rank>\r
5841                       </taxonomy>\r
5842                       <clade>\r
5843                         <taxonomy>\r
5844                           <id provider="uniprot">246194</id>\r
5845                           <code>CARHZ</code>\r
5846                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>\r
5847                         </taxonomy>\r
5848                       </clade>\r
5849                       <clade>\r
5850                         <taxonomy>\r
5851                           <id provider="uniprot">119072</id>\r
5852                           <code>THETN</code>\r
5853                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>\r
5854                           <rank>species</rank>\r
5855                         </taxonomy>\r
5856                       </clade>\r
5857                     </clade>\r
5858                     <clade>\r
5859                       <taxonomy>\r
5860                         <id provider="uniprot">49338</id>\r
5861                         <code>DESHA</code>\r
5862                         <scientific_name>Desulfitobacterium hafniense</scientific_name>\r
5863                         <synonym>Desulfitobacterium frappieri</synonym>\r
5864                         <rank>species</rank>\r
5865                       </taxonomy>\r
5866                     </clade>\r
5867                   </clade>\r
5868                   <clade>\r
5869                     <taxonomy>\r
5870                       <id provider="uniprot">515619</id>\r
5871                       <code>EUBR3</code>\r
5872                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>\r
5873                     </taxonomy>\r
5874                   </clade>\r
5875                 </clade>\r
5876               </clade>\r
5877               <clade>\r
5878                 <name>b_224</name>\r
5879                 <taxonomy>\r
5880                   <id provider="uniprot">188709</id>\r
5881                   <scientific_name>Thermotogaceae</scientific_name>\r
5882                   <rank>family</rank>\r
5883                 </taxonomy>\r
5884                 <clade>\r
5885                   <name>b_222</name>\r
5886                   <clade>\r
5887                     <taxonomy>\r
5888                       <id provider="uniprot">381764</id>\r
5889                       <code>FERNB</code>\r
5890                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>\r
5891                     </taxonomy>\r
5892                   </clade>\r
5893                   <clade>\r
5894                     <taxonomy>\r
5895                       <id provider="uniprot">416591</id>\r
5896                       <code>THELT</code>\r
5897                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>\r
5898                     </taxonomy>\r
5899                   </clade>\r
5900                 </clade>\r
5901                 <clade>\r
5902                   <taxonomy>\r
5903                     <id provider="uniprot">2336</id>\r
5904                     <code>THEMA</code>\r
5905                     <scientific_name>Thermotoga maritima</scientific_name>\r
5906                     <rank>species</rank>\r
5907                   </taxonomy>\r
5908                 </clade>\r
5909               </clade>\r
5910             </clade>\r
5911           </clade>\r
5912           <clade>\r
5913             <name>b_267</name>\r
5914             <clade>\r
5915               <name>b_263</name>\r
5916               <clade>\r
5917                 <name>b_251</name>\r
5918                 <clade>\r
5919                   <name>b_249</name>\r
5920                   <clade>\r
5921                     <name>b_245</name>\r
5922                     <clade>\r
5923                       <name>b_237</name>\r
5924                       <clade>\r
5925                         <name>b_233</name>\r
5926                         <taxonomy>\r
5927                           <id provider="uniprot">31969</id>\r
5928                           <scientific_name>Mollicutes</scientific_name>\r
5929                           <rank>class</rank>\r
5930                         </taxonomy>\r
5931                         <clade>\r
5932                           <name>b_231</name>\r
5933                           <clade>\r
5934                             <name>b_229</name>\r
5935                             <taxonomy>\r
5936                               <scientific_name>Mycoplasma</scientific_name>\r
5937                             </taxonomy>\r
5938                             <clade>\r
5939                               <taxonomy>\r
5940                                 <id provider="uniprot">2097</id>\r
5941                                 <code>MYCGE</code>\r
5942                                 <scientific_name>Mycoplasma genitalium</scientific_name>\r
5943                                 <rank>species</rank>\r
5944                               </taxonomy>\r
5945                             </clade>\r
5946                             <clade>\r
5947                               <taxonomy>\r
5948                                 <id provider="uniprot">2104</id>\r
5949                                 <code>MYCPN</code>\r
5950                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>\r
5951                                 <rank>species</rank>\r
5952                               </taxonomy>\r
5953                             </clade>\r
5954                           </clade>\r
5955                           <clade>\r
5956                             <taxonomy>\r
5957                               <id provider="uniprot">2151</id>\r
5958                               <code>MESFL</code>\r
5959                               <scientific_name>Mesoplasma florum</scientific_name>\r
5960                               <synonym>Acholeplasma florum</synonym>\r
5961                               <rank>species</rank>\r
5962                             </taxonomy>\r
5963                           </clade>\r
5964                         </clade>\r
5965                         <clade>\r
5966                           <taxonomy>\r
5967                             <id provider="uniprot">134821</id>\r
5968                             <code>UREPA</code>\r
5969                             <scientific_name>Ureaplasma parvum</scientific_name>\r
5970                             <synonym>Ureaplasma urealyticum biotype 1</synonym>\r
5971                             <rank>species</rank>\r
5972                           </taxonomy>\r
5973                         </clade>\r
5974                       </clade>\r
5975                       <clade>\r
5976                         <name>b_236</name>\r
5977                         <taxonomy>\r
5978                           <id provider="uniprot">137</id>\r
5979                           <scientific_name>Spirochaetaceae</scientific_name>\r
5980                           <rank>family</rank>\r
5981                         </taxonomy>\r
5982                         <clade>\r
5983                           <taxonomy>\r
5984                             <id provider="uniprot">139</id>\r
5985                             <code>BORBU</code>\r
5986                             <scientific_name>Borrelia burgdorferi</scientific_name>\r
5987                             <common_name>Lyme disease spirochete</common_name>\r
5988                             <rank>species</rank>\r
5989                           </taxonomy>\r
5990                         </clade>\r
5991                         <clade>\r
5992                           <taxonomy>\r
5993                             <id provider="uniprot">160</id>\r
5994                             <code>TREPA</code>\r
5995                             <scientific_name>Treponema pallidum</scientific_name>\r
5996                             <rank>species</rank>\r
5997                           </taxonomy>\r
5998                         </clade>\r
5999                       </clade>\r
6000                     </clade>\r
6001                     <clade>\r
6002                       <name>b_244</name>\r
6003                       <clade>\r
6004                         <name>b_242</name>\r
6005                         <taxonomy>\r
6006                           <id provider="uniprot">1113537</id>\r
6007                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>\r
6008                         </taxonomy>\r
6009                         <clade>\r
6010                           <name>b_240</name>\r
6011                           <clade>\r
6012                             <taxonomy>\r
6013                               <id provider="uniprot">83558</id>\r
6014                               <code>CHLPN</code>\r
6015                               <scientific_name>Chlamydia pneumoniae</scientific_name>\r
6016                               <synonym>Chlamydophila pneumoniae</synonym>\r
6017                               <rank>species</rank>\r
6018                             </taxonomy>\r
6019                           </clade>\r
6020                           <clade>\r
6021                             <taxonomy>\r
6022                               <id provider="uniprot">264202</id>\r
6023                               <code>CHLFF</code>\r
6024                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>\r
6025                             </taxonomy>\r
6026                           </clade>\r
6027                         </clade>\r
6028                         <clade>\r
6029                           <taxonomy>\r
6030                             <id provider="uniprot">83560</id>\r
6031                             <code>CHLMU</code>\r
6032                             <scientific_name>Chlamydia muridarum</scientific_name>\r
6033                             <rank>species</rank>\r
6034                           </taxonomy>\r
6035                         </clade>\r
6036                       </clade>\r
6037                       <clade>\r
6038                         <taxonomy>\r
6039                           <id provider="uniprot">785</id>\r
6040                           <code>RICTY</code>\r
6041                           <scientific_name>Rickettsia typhi</scientific_name>\r
6042                           <rank>species</rank>\r
6043                         </taxonomy>\r
6044                       </clade>\r
6045                     </clade>\r
6046                   </clade>\r
6047                   <clade>\r
6048                     <taxonomy>\r
6049                       <id provider="uniprot">28211</id>\r
6050                       <scientific_name>Alphaproteobacteria</scientific_name>\r
6051                       <rank>class</rank>\r
6052                     </taxonomy>\r
6053                     <clade>\r
6054                       <taxonomy>\r
6055                         <id provider="uniprot">38323</id>\r
6056                         <code>BARHE</code>\r
6057                         <scientific_name>Bartonella henselae</scientific_name>\r
6058                         <synonym>Rochalimaea henselae</synonym>\r
6059                         <rank>species</rank>\r
6060                       </taxonomy>\r
6061                     </clade>\r
6062                     <clade>\r
6063                       <taxonomy>\r
6064                         <id provider="uniprot">780</id>\r
6065                         <scientific_name>Rickettsia</scientific_name>\r
6066                         <rank>genus</rank>\r
6067                       </taxonomy>\r
6068                       <clade>\r
6069                         <taxonomy>\r
6070                           <id provider="uniprot">452659</id>\r
6071                           <code>RICRO</code>\r
6072                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>\r
6073                           <rank>strain</rank>\r
6074                         </taxonomy>\r
6075                       </clade>\r
6076                       <clade>\r
6077                         <taxonomy>\r
6078                           <id provider="uniprot">391896</id>\r
6079                           <code>RICB8</code>\r
6080                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>\r
6081                         </taxonomy>\r
6082                       </clade>\r
6083                     </clade>\r
6084                   </clade>\r
6085                 </clade>\r
6086                 <clade>\r
6087                   <taxonomy>\r
6088                     <id provider="uniprot">263</id>\r
6089                     <code>FRATU</code>\r
6090                     <scientific_name>Francisella tularensis</scientific_name>\r
6091                     <rank>species</rank>\r
6092                   </taxonomy>\r
6093                 </clade>\r
6094               </clade>\r
6095               <clade>\r
6096                 <name>b_262</name>\r
6097                 <clade>\r
6098                   <name>b_260</name>\r
6099                   <clade>\r
6100                     <name>b_258</name>\r
6101                     <taxonomy>\r
6102                       <id provider="uniprot">186826</id>\r
6103                       <scientific_name>Lactobacillales</scientific_name>\r
6104                       <rank>order</rank>\r
6105                     </taxonomy>\r
6106                     <clade>\r
6107                       <name>b_256</name>\r
6108                       <taxonomy>\r
6109                         <id provider="uniprot">1300</id>\r
6110                         <scientific_name>Streptococcaceae</scientific_name>\r
6111                         <rank>family</rank>\r
6112                       </taxonomy>\r
6113                       <clade>\r
6114                         <name>b_254</name>\r
6115                         <taxonomy>\r
6116                           <id provider="uniprot">1301</id>\r
6117                           <scientific_name>Streptococcus</scientific_name>\r
6118                           <rank>genus</rank>\r
6119                         </taxonomy>\r
6120                         <clade>\r
6121                           <taxonomy>\r
6122                             <id provider="uniprot">1313</id>\r
6123                             <code>STRPN</code>\r
6124                             <scientific_name>Streptococcus pneumoniae</scientific_name>\r
6125                             <rank>species</rank>\r
6126                           </taxonomy>\r
6127                         </clade>\r
6128                         <clade>\r
6129                           <taxonomy>\r
6130                             <id provider="uniprot">1314</id>\r
6131                             <code>STRPY</code>\r
6132                             <scientific_name>Streptococcus pyogenes</scientific_name>\r
6133                             <rank>species</rank>\r
6134                           </taxonomy>\r
6135                         </clade>\r
6136                       </clade>\r
6137                       <clade>\r
6138                         <taxonomy>\r
6139                           <id provider="uniprot">1360</id>\r
6140                           <code>LACLA</code>\r
6141                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>\r
6142                           <synonym>Streptococcus lactis</synonym>\r
6143                           <rank>subspecies</rank>\r
6144                         </taxonomy>\r
6145                       </clade>\r
6146                     </clade>\r
6147                     <clade>\r
6148                       <taxonomy>\r
6149                         <id provider="uniprot">1579</id>\r
6150                         <code>LACAC</code>\r
6151                         <scientific_name>Lactobacillus acidophilus</scientific_name>\r
6152                         <rank>species</rank>\r
6153                       </taxonomy>\r
6154                     </clade>\r
6155                   </clade>\r
6156                   <clade>\r
6157                     <taxonomy>\r
6158                       <id provider="uniprot">216816</id>\r
6159                       <code>BIFLO</code>\r
6160                       <scientific_name>Bifidobacterium longum</scientific_name>\r
6161                       <rank>species</rank>\r
6162                     </taxonomy>\r
6163                   </clade>\r
6164                 </clade>\r
6165                 <clade>\r
6166                   <taxonomy>\r
6167                     <id provider="uniprot">851</id>\r
6168                     <code>FUSNU</code>\r
6169                     <scientific_name>Fusobacterium nucleatum</scientific_name>\r
6170                     <rank>species</rank>\r
6171                   </taxonomy>\r
6172                 </clade>\r
6173               </clade>\r
6174             </clade>\r
6175             <clade>\r
6176               <name>b_266</name>\r
6177               <taxonomy>\r
6178                 <id provider="uniprot">61434</id>\r
6179                 <scientific_name>Dehalococcoides</scientific_name>\r
6180                 <rank>genus</rank>\r
6181               </taxonomy>\r
6182               <clade>\r
6183                 <taxonomy>\r
6184                   <id provider="uniprot">243164</id>\r
6185                   <code>DEHE1</code>\r
6186                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>\r
6187                 </taxonomy>\r
6188               </clade>\r
6189               <clade>\r
6190                 <taxonomy>\r
6191                   <id provider="uniprot">216389</id>\r
6192                   <code>DEHSB</code>\r
6193                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>\r
6194                   <rank>species</rank>\r
6195                 </taxonomy>\r
6196               </clade>\r
6197             </clade>\r
6198           </clade>\r
6199         </clade>\r
6200         <clade>\r
6201           <name>b_277</name>\r
6202           <taxonomy>\r
6203             <id provider="uniprot">29547</id>\r
6204             <scientific_name>Epsilonproteobacteria</scientific_name>\r
6205             <rank>class</rank>\r
6206           </taxonomy>\r
6207           <clade>\r
6208             <name>b_273</name>\r
6209             <clade>\r
6210               <taxonomy>\r
6211                 <id provider="uniprot">387092</id>\r
6212                 <code>NITSB</code>\r
6213                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>\r
6214                 <rank>species</rank>\r
6215               </taxonomy>\r
6216             </clade>\r
6217             <clade>\r
6218               <taxonomy>\r
6219                 <id provider="uniprot">387093</id>\r
6220                 <code>SULNB</code>\r
6221                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>\r
6222                 <rank>species</rank>\r
6223               </taxonomy>\r
6224             </clade>\r
6225           </clade>\r
6226           <clade>\r
6227             <name>b_276</name>\r
6228             <taxonomy>\r
6229               <id provider="uniprot">213849</id>\r
6230               <scientific_name>Campylobacterales</scientific_name>\r
6231               <rank>order</rank>\r
6232             </taxonomy>\r
6233             <clade>\r
6234               <taxonomy>\r
6235                 <id provider="uniprot">197</id>\r
6236                 <code>CAMJE</code>\r
6237                 <scientific_name>Campylobacter jejuni</scientific_name>\r
6238                 <rank>species</rank>\r
6239               </taxonomy>\r
6240             </clade>\r
6241             <clade>\r
6242               <taxonomy>\r
6243                 <id provider="uniprot">357544</id>\r
6244                 <code>HELPH</code>\r
6245                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>\r
6246               </taxonomy>\r
6247             </clade>\r
6248           </clade>\r
6249         </clade>\r
6250       </clade>\r
6251       <clade>\r
6252         <taxonomy>\r
6253           <id provider="uniprot">63363</id>\r
6254           <code>AQUAE</code>\r
6255           <scientific_name>Aquifex aeolicus</scientific_name>\r
6256           <rank>species</rank>\r
6257         </taxonomy>\r
6258       </clade>\r
6259     </clade>\r
6260   </clade>\r
6261 </phylogeny>\r
6262 </phyloxml>