forester/test_data/rio_tol_1.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <name>Opisthokonta &amp; Apusozoa</name>
  20             <clade>
  21               <taxonomy>
  22                 <id provider="uniprot">33154</id>
  23                 <scientific_name>Opisthokonta</scientific_name>
  24                 <common_name>Fungi/Metazoa group</common_name>
  25               </taxonomy>
  26               <clade>
  27                 <taxonomy>
  28                   <scientific_name>Holozoa</scientific_name>
  29                 </taxonomy>
  30                 <clade>
  31                   <name>Choanoflagellatea &amp; Metazoa</name>
  32                   <clade>
  33                     <name>Metazoa</name>
  34                     <taxonomy>
  35                       <id provider="uniprot">33208</id>
  36                       <scientific_name>Metazoa</scientific_name>
  37                       <rank>kingdom</rank>
  38                     </taxonomy>
  39                     <clade>
  40                       <name>Eumetazoa</name>
  41                       <reference doi="10.1038/nature06614">
  42                       </reference>
  43                       <clade>
  44                         <name>Bilateria_Cnidaria</name>
  45                         <clade>
  46                           <name>Bilateria</name>
  47                           <clade>
  48                             <name>Deuterostomia</name>
  49                             <reference doi="10.1038/nature04336">
  50                             </reference>
  51                             <clade>
  52                               <name>Chordata</name>
  53                               <taxonomy>
  54                                 <id provider="uniprot">7711</id>
  55                                 <scientific_name>Chordata</scientific_name>
  56                                 <rank>phylum</rank>
  57                               </taxonomy>
  58                               <clade>
  59                                 <name>Urochordata &amp; Vertebrata</name>
  60                                 <clade>
  61                                   <taxonomy>
  62                                     <id provider="uniprot">7742</id>
  63                                     <scientific_name>Vertebrata</scientific_name>
  64                                   </taxonomy>
  65                                   <clade>
  66                                     <taxonomy>
  67                                       <id provider="uniprot">7776</id>
  68                                       <scientific_name>Gnathostomata</scientific_name>
  69                                       <common_name>jawed vertebrates</common_name>
  70                                       <rank>superclass</rank>
  71                                     </taxonomy>
  72                                     <clade>
  73                                       <taxonomy>
  74                                         <id provider="uniprot">117571</id>
  75                                         <scientific_name>Euteleostomi</scientific_name>
  76                                       </taxonomy>
  77                                       <clade>
  78                                         <name>Tetrapoda</name>
  79                                         <clade>
  80                                           <name>Amniota</name>
  81                                           <clade>
  82                                             <taxonomy>
  83                                               <id provider="uniprot">40674</id>
  84                                               <scientific_name>Mammalia</scientific_name>
  85                                               <rank>class</rank>
  86                                             </taxonomy>
  87                                             <clade>
  88                                               <name>Theria</name>
  89                                               <clade>
  90                                                 <taxonomy>
  91                                                   <id provider="uniprot">9347</id>
  92                                                   <scientific_name>Eutheria</scientific_name>
  93                                                   <common_name>Placental mammals</common_name>
  94                                                 </taxonomy>
  95                                                 <reference doi="10.1002/bies.200900053">
  96                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  97                                                 </reference>
  98                                                 <clade>
  99                                                   <taxonomy>
 100                                                     <scientific_name>Boreoeutheria</scientific_name>
 101                                                     <synonym>Boreotheria</synonym>
 102                                                   </taxonomy>
 103                                                   <clade>
 104                                                     <taxonomy>
 105                                                       <id provider="uniprot">314146</id>
 106                                                       <scientific_name>Euarchontoglires</scientific_name>
 107                                                       <rank>superorder</rank>
 108                                                     </taxonomy>
 109                                                     <clade>
 110                                                       <taxonomy>
 111                                                         <scientific_name>Euarchonta</scientific_name>
 112                                                       </taxonomy>
 113                                                       <clade>
 114                                                         <taxonomy>
 115                                                           <id provider="uniprot">9443</id>
 116                                                           <scientific_name>Primates</scientific_name>
 117                                                           <rank>order</rank>
 118                                                         </taxonomy>
 119                                                         <clade>
 120                                                           <taxonomy>
 121                                                             <id provider="uniprot">376913</id>
 122                                                             <scientific_name>Haplorrhini</scientific_name>
 123                                                             <rank>suborder</rank>
 124                                                           </taxonomy>
 125                                                           <clade>
 126                                                             <taxonomy>
 127                                                               <id provider="uniprot">314293</id>
 128                                                               <scientific_name>Simiiformes</scientific_name>
 129                                                               <rank>infraorder</rank>
 130                                                             </taxonomy>
 131                                                             <clade>
 132                                                               <taxonomy>
 133                                                                 <id provider="uniprot">9526</id>
 134                                                                 <scientific_name>Catarrhini</scientific_name>
 135                                                               </taxonomy>
 136                                                               <clade>
 137                                                                 <taxonomy>
 138                                                                   <id provider="uniprot">314295</id>
 139                                                                   <scientific_name>Hominoidea</scientific_name>
 140                                                                   <common_name>Apes</common_name>
 141                                                                   <rank>superfamily</rank>
 142                                                                 </taxonomy>
 143                                                                 <clade>
 144                                                                   <taxonomy>
 145                                                                     <id provider="uniprot">9604</id>
 146                                                                     <scientific_name>Hominidae</scientific_name>
 147                                                                     <common_name>Great apes</common_name>
 148                                                                     <rank>family</rank>
 149                                                                   </taxonomy>
 150                                                                   <clade>
 151                                                                     <taxonomy>
 152                                                                       <id provider="uniprot">207598</id>
 153                                                                       <scientific_name>Homininae</scientific_name>
 154                                                                       <rank>subfamily</rank>
 155                                                                     </taxonomy>
 156                                                                     <clade>
 157                                                                       <taxonomy>
 158                                                                         <scientific_name>Hominini</scientific_name>
 159                                                                         <rank>tribe</rank>
 160                                                                       </taxonomy>
 161                                                                       <clade>
 162                                                                         <taxonomy>
 163                                                                           <id provider="uniprot">9606</id>
 164                                                                           <code>HUMAN</code>
 165                                                                           <scientific_name>Homo sapiens</scientific_name>
 166                                                                           <common_name>Human</common_name>
 167                                                                           <rank>species</rank>
 168                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 169                                                                         </taxonomy>
 170                                                                       </clade>
 171                                                                       <clade>
 172                                                                         <taxonomy>
 173                                                                           <id provider="uniprot">9598</id>
 174                                                                           <code>PANTR</code>
 175                                                                           <scientific_name>Pan troglodytes</scientific_name>
 176                                                                           <common_name>Chimpanzee</common_name>
 177                                                                           <rank>species</rank>
 178                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 179                                                                         </taxonomy>
 180                                                                       </clade>
 181                                                                     </clade>
 182                                                                     <clade>
 183                                                                       <taxonomy>
 184                                                                         <id provider="uniprot">9595</id>
 185                                                                         <code>GORGO</code>
 186                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 187                                                                         <common_name>Western lowland gorilla</common_name>
 188                                                                         <rank>subspecies</rank>
 189                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 190                                                                       </taxonomy>
 191                                                                     </clade>
 192                                                                   </clade>
 193                                                                   <clade>
 194                                                                     <taxonomy>
 195                                                                       <id provider="uniprot">9601</id>
 196                                                                       <code>PONAB</code>
 197                                                                       <scientific_name>Pongo abelii</scientific_name>
 198                                                                       <common_name>Sumatran orangutan</common_name>
 199                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 200                                                                       <rank>species</rank>
 201                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 202                                                                     </taxonomy>
 203                                                                   </clade>
 204                                                                 </clade>
 205                                                                 <clade>
 206                                                                   <taxonomy>
 207                                                                     <id provider="uniprot">61853</id>
 208                                                                     <code>NOMLE</code>
 209                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 210                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 211                                                                     <synonym>Hylobates leucogenys</synonym>
 212                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 213                                                                     <rank>species</rank>
 214                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 215                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 216                                                                   </taxonomy>
 217                                                                 </clade>
 218                                                               </clade>
 219                                                               <clade>
 220                                                                 <taxonomy>
 221                                                                   <id provider="uniprot">9528</id>
 222                                                                   <scientific_name>Cercopithecinae</scientific_name>
 223                                                                   <rank>subfamily</rank>
 224                                                                 </taxonomy>
 225                                                                 <clade>
 226                                                                   <taxonomy>
 227                                                                     <id provider="uniprot">9544</id>
 228                                                                     <code>MACMU</code>
 229                                                                     <scientific_name>Macaca mulatta</scientific_name>
 230                                                                     <common_name>Rhesus macaque</common_name>
 231                                                                     <rank>species</rank>
 232                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 233                                                                   </taxonomy>
 234                                                                 </clade>
 235                                                                 <clade>
 236                                                                   <taxonomy>
 237                                                                     <id provider="uniprot">9557</id>
 238                                                                     <code>PAPHA</code>
 239                                                                     <scientific_name>Papio hamadryas</scientific_name>
 240                                                                     <common_name>Hamadryas baboon</common_name>
 241                                                                     <rank>species</rank>
 242                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 243                                                                   </taxonomy>
 244                                                                 </clade>
 245                                                               </clade>
 246                                                             </clade>
 247                                                             <clade>
 248                                                               <taxonomy>
 249                                                                 <id provider="uniprot">9483</id>
 250                                                                 <code>CALJA</code>
 251                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 252                                                                 <common_name>White-tufted-ear marmoset</common_name>
 253                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 254                                                                 <rank>species</rank>
 255                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 256                                                               </taxonomy>
 257                                                             </clade>
 258                                                           </clade>
 259                                                           <clade>
 260                                                             <taxonomy>
 261                                                               <id provider="uniprot">9478</id>
 262                                                               <code>TARSY</code>
 263                                                               <scientific_name>Tarsius syrichta</scientific_name>
 264                                                               <common_name>Philippine tarsier</common_name>
 265                                                               <rank>species</rank>
 266                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 267                                                             </taxonomy>
 268                                                           </clade>
 269                                                         </clade>
 270                                                         <clade>
 271                                                           <taxonomy>
 272                                                             <id provider="uniprot">376911</id>
 273                                                             <scientific_name>Strepsirrhini</scientific_name>
 274                                                             <rank>suborder</rank>
 275                                                           </taxonomy>
 276                                                           <clade>
 277                                                             <taxonomy>
 278                                                               <id provider="uniprot">30608</id>
 279                                                               <code>MICMU</code>
 280                                                               <scientific_name>Microcebus murinus</scientific_name>
 281                                                               <common_name>Lesser mouse lemur</common_name>
 282                                                               <rank>species</rank>
 283                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 284                                                             </taxonomy>
 285                                                           </clade>
 286                                                           <clade>
 287                                                             <taxonomy>
 288                                                               <id provider="uniprot">30611</id>
 289                                                               <code>OTOGA</code>
 290                                                               <scientific_name>Otolemur garnettii</scientific_name>
 291                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 292                                                               <synonym>Galago garnetti</synonym>
 293                                                               <synonym>Small-eared galago</synonym>
 294                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 295                                                               <rank>species</rank>
 296                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 297                                                             </taxonomy>
 298                                                           </clade>
 299                                                         </clade>
 300                                                       </clade>
 301                                                       <clade>
 302                                                         <taxonomy>
 303                                                           <id provider="uniprot">37347</id>
 304                                                           <code>TUPBE</code>
 305                                                           <scientific_name>Tupaia belangeri</scientific_name>
 306                                                           <common_name>Common tree shrew</common_name>
 307                                                           <synonym>Tupaia glis belangeri</synonym>
 308                                                           <rank>species</rank>
 309                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 310                                                         </taxonomy>
 311                                                       </clade>
 312                                                     </clade>
 313                                                     <clade>
 314                                                       <taxonomy>
 315                                                         <id provider="uniprot">314147</id>
 316                                                         <scientific_name>Glires</scientific_name>
 317                                                         <common_name>Rodents and rabbits</common_name>
 318                                                       </taxonomy>
 319                                                       <clade>
 320                                                         <taxonomy>
 321                                                           <id provider="uniprot">9989</id>
 322                                                           <scientific_name>Rodentia</scientific_name>
 323                                                           <rank>order</rank>
 324                                                         </taxonomy>
 325                                                         <clade>
 326                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 327                                                           <reference doi="10.1186/1471-2148-9-71">
 328                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 329                                                           </reference>
 330                                                           <clade>
 331                                                             <taxonomy>
 332                                                               <common_name>Mouse-related clade</common_name>
 333                                                             </taxonomy>
 334                                                             <clade>
 335                                                               <taxonomy>
 336                                                                 <id provider="uniprot">337687</id>
 337                                                                 <scientific_name>Muroidea</scientific_name>
 338                                                               </taxonomy>
 339                                                               <clade>
 340                                                                 <taxonomy>
 341                                                                   <id provider="uniprot">39107</id>
 342                                                                   <scientific_name>Murinae</scientific_name>
 343                                                                   <rank>subfamily</rank>
 344                                                                 </taxonomy>
 345                                                                 <clade>
 346                                                                   <taxonomy>
 347                                                                     <id provider="uniprot">10090</id>
 348                                                                     <code>MOUSE</code>
 349                                                                     <scientific_name>Mus musculus</scientific_name>
 350                                                                     <common_name>Mouse</common_name>
 351                                                                     <rank>species</rank>
 352                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 353                                                                   </taxonomy>
 354                                                                 </clade>
 355                                                                 <clade>
 356                                                                   <taxonomy>
 357                                                                     <id provider="uniprot">10116</id>
 358                                                                     <code>RAT</code>
 359                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 360                                                                     <common_name>Rat</common_name>
 361                                                                     <rank>species</rank>
 362                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 363                                                                   </taxonomy>
 364                                                                 </clade>
 365                                                               </clade>
 366                                                               <clade>
 367                                                                 <taxonomy>
 368                                                                   <id provider="uniprot">10036</id>
 369                                                                   <code>MESAU</code>
 370                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 371                                                                   <common_name>Golden hamster</common_name>
 372                                                                   <rank>species</rank>
 373                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 374                                                                 </taxonomy>
 375                                                               </clade>
 376                                                             </clade>
 377                                                             <clade>
 378                                                               <taxonomy>
 379                                                                 <id provider="uniprot">10020</id>
 380                                                                 <code>DIPOR</code>
 381                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 382                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 383                                                                 <rank>species</rank>
 384                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 385                                                               </taxonomy>
 386                                                             </clade>
 387                                                           </clade>
 388                                                           <clade>
 389                                                             <taxonomy>
 390                                                               <id provider="uniprot">10141</id>
 391                                                               <code>CAVPO</code>
 392                                                               <scientific_name>Cavia porcellus</scientific_name>
 393                                                               <common_name>Guinea pig</common_name>
 394                                                               <rank>species</rank>
 395                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 396                                                             </taxonomy>
 397                                                           </clade>
 398                                                         </clade>
 399                                                         <clade>
 400                                                           <taxonomy>
 401                                                             <id provider="uniprot">43179</id>
 402                                                             <code>SPETR</code>
 403                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 404                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 405                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 406                                                             <rank>species</rank>
 407                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 408                                                           </taxonomy>
 409                                                         </clade>
 410                                                       </clade>
 411                                                       <clade>
 412                                                         <taxonomy>
 413                                                           <id provider="uniprot">9975</id>
 414                                                           <scientific_name>Lagomorpha</scientific_name>
 415                                                           <common_name>Rabbits, hares, pikas</common_name>
 416                                                           <rank>order</rank>
 417                                                         </taxonomy>
 418                                                         <clade>
 419                                                           <taxonomy>
 420                                                             <id provider="uniprot">9978</id>
 421                                                             <code>OCHPR</code>
 422                                                             <scientific_name>Ochotona princeps</scientific_name>
 423                                                             <common_name>Southern American pika</common_name>
 424                                                             <rank>species</rank>
 425                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 426                                                           </taxonomy>
 427                                                         </clade>
 428                                                         <clade>
 429                                                           <taxonomy>
 430                                                             <id provider="uniprot">9986</id>
 431                                                             <code>RABIT</code>
 432                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 433                                                             <common_name>Rabbit</common_name>
 434                                                             <rank>species</rank>
 435                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 436                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 437                                                           </taxonomy>
 438                                                         </clade>
 439                                                       </clade>
 440                                                     </clade>
 441                                                   </clade>
 442                                                   <clade>
 443                                                     <taxonomy>
 444                                                       <id provider="uniprot">314145</id>
 445                                                       <scientific_name>Laurasiatheria</scientific_name>
 446                                                       <rank>superorder</rank>
 447                                                     </taxonomy>
 448                                                     <clade>
 449                                                       <taxonomy>
 450                                                         <scientific_name>Scrotifera</scientific_name>
 451                                                       </taxonomy>
 452                                                       <clade>
 453                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 454                                                         <clade>
 455                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 456                                                           <clade>
 457                                                             <taxonomy>
 458                                                               <id provider="uniprot">91561</id>
 459                                                               <scientific_name>Cetartiodactyla</scientific_name>
 460                                                               <common_name>Even-toed ungulates</common_name>
 461                                                             </taxonomy>
 462                                                             <clade>
 463                                                               <name>Cetruminantia &amp; Suina</name>
 464                                                               <clade>
 465                                                                 <taxonomy>
 466                                                                   <scientific_name>Cetruminantia</scientific_name>
 467                                                                 </taxonomy>
 468                                                                 <clade>
 469                                                                   <taxonomy>
 470                                                                     <id provider="uniprot">9895</id>
 471                                                                     <scientific_name>Bovidae</scientific_name>
 472                                                                     <rank>family</rank>
 473                                                                   </taxonomy>
 474                                                                   <clade>
 475                                                                     <taxonomy>
 476                                                                       <id provider="uniprot">9913</id>
 477                                                                       <code>BOVIN</code>
 478                                                                       <scientific_name>Bos taurus</scientific_name>
 479                                                                       <common_name>Bovine</common_name>
 480                                                                       <synonym>Bos bovis</synonym>
 481                                                                       <rank>species</rank>
 482                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 483                                                                     </taxonomy>
 484                                                                   </clade>
 485                                                                   <clade>
 486                                                                     <taxonomy>
 487                                                                       <id provider="uniprot">9940</id>
 488                                                                       <code>SHEEP</code>
 489                                                                       <scientific_name>Ovis aries</scientific_name>
 490                                                                       <common_name>Sheep</common_name>
 491                                                                       <rank>species</rank>
 492                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 493                                                                     </taxonomy>
 494                                                                   </clade>
 495                                                                 </clade>
 496                                                                 <clade>
 497                                                                   <taxonomy>
 498                                                                     <id provider="uniprot">9721</id>
 499                                                                     <scientific_name>Cetacea</scientific_name>
 500                                                                     <common_name>Whales</common_name>
 501                                                                     <rank>order</rank>
 502                                                                   </taxonomy>
 503                                                                   <clade>
 504                                                                     <taxonomy>
 505                                                                       <id provider="uniprot">9771</id>
 506                                                                       <code>BALMU</code>
 507                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 508                                                                       <common_name>Blue whale</common_name>
 509                                                                       <rank>species</rank>
 510                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 511                                                                     </taxonomy>
 512                                                                   </clade>
 513                                                                   <clade>
 514                                                                     <taxonomy>
 515                                                                       <id provider="uniprot">9739</id>
 516                                                                       <code>TURTR</code>
 517                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 518                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 519                                                                       <synonym>Delphinus truncatus</synonym>
 520                                                                       <rank>species</rank>
 521                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 522                                                                     </taxonomy>
 523                                                                   </clade>
 524                                                                 </clade>
 525                                                               </clade>
 526                                                               <clade>
 527                                                                 <taxonomy>
 528                                                                   <id provider="uniprot">9823</id>
 529                                                                   <code>PIG</code>
 530                                                                   <scientific_name>Sus scrofa</scientific_name>
 531                                                                   <common_name>Pig</common_name>
 532                                                                   <rank>species</rank>
 533                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 534                                                                 </taxonomy>
 535                                                               </clade>
 536                                                             </clade>
 537                                                             <clade>
 538                                                               <taxonomy>
 539                                                                 <id provider="uniprot">30538</id>
 540                                                                 <code>LAMPA</code>
 541                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 542                                                                 <common_name>Alpaca</common_name>
 543                                                                 <synonym>Lama pacos</synonym>
 544                                                                 <rank>species</rank>
 545                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 546                                                               </taxonomy>
 547                                                             </clade>
 548                                                           </clade>
 549                                                           <clade>
 550                                                             <taxonomy>
 551                                                               <id provider="uniprot">9796</id>
 552                                                               <code>HORSE</code>
 553                                                               <scientific_name>Equus caballus</scientific_name>
 554                                                               <common_name>Horse</common_name>
 555                                                               <rank>species</rank>
 556                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 557                                                             </taxonomy>
 558                                                           </clade>
 559                                                         </clade>
 560                                                         <clade>
 561                                                           <taxonomy>
 562                                                             <id provider="uniprot">9397</id>
 563                                                             <scientific_name>Chiroptera</scientific_name>
 564                                                             <common_name>Bats</common_name>
 565                                                             <rank>order</rank>
 566                                                           </taxonomy>
 567                                                           <clade>
 568                                                             <taxonomy>
 569                                                               <id provider="uniprot">59463</id>
 570                                                               <code>MYOLU</code>
 571                                                               <scientific_name>Myotis lucifugus</scientific_name>
 572                                                               <common_name>Little brown bat</common_name>
 573                                                               <rank>species</rank>
 574                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 575                                                             </taxonomy>
 576                                                           </clade>
 577                                                           <clade>
 578                                                             <taxonomy>
 579                                                               <id provider="uniprot">132908</id>
 580                                                               <code>PTEVA</code>
 581                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 582                                                               <common_name>Large flying fox</common_name>
 583                                                               <rank>species</rank>
 584                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 585                                                             </taxonomy>
 586                                                           </clade>
 587                                                         </clade>
 588                                                       </clade>
 589                                                       <clade>
 590                                                         <name>Carnivora</name>
 591                                                         <taxonomy>
 592                                                           <id provider="uniprot">33554</id>
 593                                                           <scientific_name>Carnivora</scientific_name>
 594                                                           <rank>order</rank>
 595                                                         </taxonomy>
 596                                                         <clade>
 597                                                           <taxonomy>
 598                                                             <id provider="uniprot">379584</id>
 599                                                             <scientific_name>Caniformia</scientific_name>
 600                                                             <rank>suborder</rank>
 601                                                           </taxonomy>
 602                                                           <clade>
 603                                                             <taxonomy>
 604                                                               <id provider="uniprot">9646</id>
 605                                                               <code>AILME</code>
 606                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 607                                                               <common_name>Giant panda</common_name>
 608                                                               <rank>species</rank>
 609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 610                                                             </taxonomy>
 611                                                           </clade>
 612                                                           <clade>
 613                                                             <name>CANFA</name>
 614                                                             <taxonomy>
 615                                                               <id provider="uniprot">9615</id>
 616                                                               <code>CANFA</code>
 617                                                               <scientific_name>Canis familiaris</scientific_name>
 618                                                               <common_name>Dog</common_name>
 619                                                               <synonym>Canis lupus familiaris</synonym>
 620                                                               <rank>subspecies</rank>
 621                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 622                                                             </taxonomy>
 623                                                           </clade>
 624                                                         </clade>
 625                                                         <clade>
 626                                                           <name>FELCA</name>
 627                                                           <taxonomy>
 628                                                             <id provider="uniprot">9685</id>
 629                                                             <code>FELCA</code>
 630                                                             <scientific_name>Felis catus</scientific_name>
 631                                                             <common_name>Cat</common_name>
 632                                                             <synonym>Felis silvestris catus</synonym>
 633                                                             <rank>species</rank>
 634                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 635                                                           </taxonomy>
 636                                                         </clade>
 637                                                       </clade>
 638                                                     </clade>
 639                                                     <clade>
 640                                                       <taxonomy>
 641                                                         <id provider="uniprot">9362</id>
 642                                                         <scientific_name>Insectivora</scientific_name>
 643                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 644                                                         <rank>order</rank>
 645                                                       </taxonomy>
 646                                                       <clade>
 647                                                         <taxonomy>
 648                                                           <id provider="uniprot">9365</id>
 649                                                           <code>ERIEU</code>
 650                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 651                                                           <common_name>Western European hedgehog</common_name>
 652                                                           <rank>species</rank>
 653                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 654                                                         </taxonomy>
 655                                                       </clade>
 656                                                       <clade>
 657                                                         <taxonomy>
 658                                                           <id provider="uniprot">42254</id>
 659                                                           <code>SORAR</code>
 660                                                           <scientific_name>Sorex araneus</scientific_name>
 661                                                           <common_name>Eurasian common shrew</common_name>
 662                                                           <synonym>European shrew</synonym>
 663                                                           <rank>species</rank>
 664                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 665                                                         </taxonomy>
 666                                                       </clade>
 667                                                     </clade>
 668                                                   </clade>
 669                                                 </clade>
 670                                                 <clade>
 671                                                   <taxonomy>
 672                                                     <scientific_name>Atlantogenata</scientific_name>
 673                                                   </taxonomy>
 674                                                   <clade>
 675                                                     <taxonomy>
 676                                                       <id provider="uniprot">311790</id>
 677                                                       <scientific_name>Afrotheria</scientific_name>
 678                                                       <rank>superorder</rank>
 679                                                     </taxonomy>
 680                                                     <clade>
 681                                                       <taxonomy>
 682                                                         <scientific_name>Paenungulata</scientific_name>
 683                                                       </taxonomy>
 684                                                       <clade>
 685                                                         <taxonomy>
 686                                                           <id provider="uniprot">9785</id>
 687                                                           <code>LOXAF</code>
 688                                                           <scientific_name>Loxodonta africana</scientific_name>
 689                                                           <common_name>African savanna elephant</common_name>
 690                                                           <rank>species</rank>
 691                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 692                                                         </taxonomy>
 693                                                       </clade>
 694                                                       <clade>
 695                                                         <taxonomy>
 696                                                           <id provider="uniprot">9813</id>
 697                                                           <code>PROCA</code>
 698                                                           <scientific_name>Procavia capensis</scientific_name>
 699                                                           <common_name>Cape hyrax</common_name>
 700                                                           <synonym>Rock dassie</synonym>
 701                                                           <rank>species</rank>
 702                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 703                                                         </taxonomy>
 704                                                       </clade>
 705                                                     </clade>
 706                                                     <clade>
 707                                                       <taxonomy>
 708                                                         <id provider="uniprot">9371</id>
 709                                                         <code>ECHTE</code>
 710                                                         <scientific_name>Echinops telfairi</scientific_name>
 711                                                         <common_name>Lesser hedgehog tenrec</common_name>
 712                                                         <rank>species</rank>
 713                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 714                                                       </taxonomy>
 715                                                     </clade>
 716                                                   </clade>
 717                                                   <clade>
 718                                                     <taxonomy>
 719                                                       <id provider="uniprot">9348</id>
 720                                                       <scientific_name>Xenarthra</scientific_name>
 721                                                       <synonym>Edentata</synonym>
 722                                                       <rank>superorder</rank>
 723                                                     </taxonomy>
 724                                                     <clade>
 725                                                       <taxonomy>
 726                                                         <id provider="uniprot">9358</id>
 727                                                         <code>CHOHO</code>
 728                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 729                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 730                                                         <rank>species</rank>
 731                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 732                                                       </taxonomy>
 733                                                     </clade>
 734                                                     <clade>
 735                                                       <taxonomy>
 736                                                         <id provider="uniprot">9361</id>
 737                                                         <code>DASNO</code>
 738                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 739                                                         <common_name>Nine-banded armadillo</common_name>
 740                                                         <rank>species</rank>
 741                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 742                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 743                                                       </taxonomy>
 744                                                     </clade>
 745                                                   </clade>
 746                                                 </clade>
 747                                               </clade>
 748                                               <clade>
 749                                                 <taxonomy>
 750                                                   <id provider="uniprot">9263</id>
 751                                                   <scientific_name>Metatheria</scientific_name>
 752                                                   <common_name>Marsupials</common_name>
 753                                                 </taxonomy>
 754                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 755                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 756                                                 </reference>
 757                                                 <reference>
 758                                                 </reference>
 759                                                 <clade>
 760                                                   <taxonomy>
 761                                                     <scientific_name>Eometatheria</scientific_name>
 762                                                   </taxonomy>
 763                                                   <clade>
 764                                                     <taxonomy>
 765                                                       <id provider="uniprot">9315</id>
 766                                                       <code>MACEU</code>
 767                                                       <scientific_name>Macropus eugenii</scientific_name>
 768                                                       <common_name>Tammar wallaby</common_name>
 769                                                       <rank>species</rank>
 770                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 771                                                     </taxonomy>
 772                                                   </clade>
 773                                                   <clade>
 774                                                     <taxonomy>
 775                                                       <id provider="uniprot">9305</id>
 776                                                       <code>SARHA</code>
 777                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 778                                                       <common_name>Tasmanian devil</common_name>
 779                                                       <synonym>Sarcophilus laniarius</synonym>
 780                                                       <rank>species</rank>
 781                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 782                                                     </taxonomy>
 783                                                   </clade>
 784                                                 </clade>
 785                                                 <clade>
 786                                                   <name>MONDO</name>
 787                                                   <taxonomy>
 788                                                     <id provider="uniprot">13616</id>
 789                                                     <code>MONDO</code>
 790                                                     <scientific_name>Monodelphis domestica</scientific_name>
 791                                                     <common_name>Short-tailed gray opossum</common_name>
 792                                                     <rank>species</rank>
 793                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 794                                                   </taxonomy>
 795                                                 </clade>
 796                                               </clade>
 797                                             </clade>
 798                                             <clade>
 799                                               <name>ORNAN</name>
 800                                               <taxonomy>
 801                                                 <id provider="uniprot">9258</id>
 802                                                 <code>ORNAN</code>
 803                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 804                                                 <common_name>Duckbill platypus</common_name>
 805                                                 <rank>species</rank>
 806                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 807                                               </taxonomy>
 808                                             </clade>
 809                                           </clade>
 810                                           <clade>
 811                                             <name>Diapsida</name>
 812                                             <clade>
 813                                               <name>Neognathae</name>
 814                                               <taxonomy>
 815                                                 <id provider="uniprot">8825</id>
 816                                                 <scientific_name>Neognathae</scientific_name>
 817                                                 <rank>superorder</rank>
 818                                               </taxonomy>
 819                                               <clade>
 820                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 821                                                 <clade>
 822                                                   <taxonomy>
 823                                                     <id provider="uniprot">9005</id>
 824                                                     <scientific_name>Phasianidae</scientific_name>
 825                                                     <rank>family</rank>
 826                                                   </taxonomy>
 827                                                   <clade>
 828                                                     <name>CHICK</name>
 829                                                     <taxonomy>
 830                                                       <id provider="uniprot">9031</id>
 831                                                       <code>CHICK</code>
 832                                                       <scientific_name>Gallus gallus</scientific_name>
 833                                                       <common_name>Chicken</common_name>
 834                                                       <synonym>Gallus domesticus</synonym>
 835                                                       <rank>species</rank>
 836                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 837                                                     </taxonomy>
 838                                                   </clade>
 839                                                   <clade>
 840                                                     <taxonomy>
 841                                                       <id provider="uniprot">9103</id>
 842                                                       <code>MELGA</code>
 843                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 844                                                       <common_name>Common turkey</common_name>
 845                                                       <rank>species</rank>
 846                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 847                                                     </taxonomy>
 848                                                   </clade>
 849                                                 </clade>
 850                                                 <clade>
 851                                                   <taxonomy>
 852                                                     <id provider="uniprot">8839</id>
 853                                                     <code>ANAPL</code>
 854                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 855                                                     <common_name>Domestic duck</common_name>
 856                                                     <synonym>Anas boschas</synonym>
 857                                                     <rank>species</rank>
 858                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 859                                                   </taxonomy>
 860                                                 </clade>
 861                                               </clade>
 862                                               <clade>
 863                                                 <name>TAEGU</name>
 864                                                 <taxonomy>
 865                                                   <id provider="uniprot">59729</id>
 866                                                   <code>TAEGU</code>
 867                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 868                                                   <common_name>Zebra finch</common_name>
 869                                                   <synonym>Poephila guttata</synonym>
 870                                                   <rank>species</rank>
 871                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 872                                                 </taxonomy>
 873                                               </clade>
 874                                             </clade>
 875                                             <clade>
 876                                               <name>ANOCA</name>
 877                                               <taxonomy>
 878                                                 <id provider="eol">795869</id>
 879                                                 <code>ANOCA</code>
 880                                                 <scientific_name>Anolis carolinensis</scientific_name>
 881                                                 <authority>Voigt, 1832</authority>
 882                                                 <common_name>Green anole</common_name>
 883                                                 <synonym>American chameleon</synonym>
 884                                                 <rank>species</rank>
 885                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 886                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 887                                               </taxonomy>
 888                                             </clade>
 889                                           </clade>
 890                                         </clade>
 891                                         <clade>
 892                                           <taxonomy>
 893                                             <id provider="uniprot">8353</id>
 894                                             <scientific_name>Xenopus</scientific_name>
 895                                             <rank>genus</rank>
 896                                           </taxonomy>
 897                                           <clade>
 898                                             <name>XENTR</name>
 899                                             <taxonomy>
 900                                               <id provider="uniprot">8364</id>
 901                                               <code>XENTR</code>
 902                                               <scientific_name>Xenopus tropicalis</scientific_name>
 903                                               <common_name>Western clawed frog</common_name>
 904                                               <synonym>Silurana tropicalis</synonym>
 905                                               <rank>species</rank>
 906                                               <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 907                                             </taxonomy>
 908                                           </clade>
 909                                           <clade>
 910                                             <taxonomy>
 911                                               <id provider="uniprot">8355</id>
 912                                               <code>XENLA</code>
 913                                               <scientific_name>Xenopus laevis</scientific_name>
 914                                               <authority>Daudin, 1802</authority>
 915                                               <common_name>African clawed frog</common_name>
 916                                               <synonym>Bufo laevis</synonym>
 917                                               <rank>species</rank>
 918                                               <uri>http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg</uri>
 919                                             </taxonomy>
 920                                           </clade>
 921                                         </clade>
 922                                       </clade>
 923                                       <clade>
 924                                         <name>Teleostei</name>
 925                                         <taxonomy>
 926                                           <id provider="uniprot">32443</id>
 927                                           <scientific_name>Teleostei</scientific_name>
 928                                         </taxonomy>
 929                                         <clade>
 930                                           <taxonomy>
 931                                             <id provider="uniprot">123368</id>
 932                                             <scientific_name>Acanthomorpha</scientific_name>
 933                                           </taxonomy>
 934                                           <clade>
 935                                             <taxonomy>
 936                                               <id provider="uniprot">32485</id>
 937                                               <scientific_name>Percomorpha</scientific_name>
 938                                             </taxonomy>
 939                                             <clade>
 940                                               <name>Smegmamorpha</name>
 941                                               <clade>
 942                                                 <name>GASAC</name>
 943                                                 <taxonomy>
 944                                                   <id provider="uniprot">69293</id>
 945                                                   <code>GASAC</code>
 946                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 947                                                   <common_name>Three-spined stickleback</common_name>
 948                                                   <rank>species</rank>
 949                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 950                                                 </taxonomy>
 951                                               </clade>
 952                                               <clade>
 953                                                 <name>ORYLA</name>
 954                                                 <taxonomy>
 955                                                   <id provider="uniprot">8090</id>
 956                                                   <code>ORYLA</code>
 957                                                   <scientific_name>Oryzias latipes</scientific_name>
 958                                                   <common_name>Medaka fish</common_name>
 959                                                   <synonym>Japanese ricefish</synonym>
 960                                                   <rank>species</rank>
 961                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 962                                                 </taxonomy>
 963                                               </clade>
 964                                             </clade>
 965                                             <clade>
 966                                               <taxonomy>
 967                                                 <id provider="uniprot">31031</id>
 968                                                 <scientific_name>Tetraodontidae</scientific_name>
 969                                                 <common_name>puffers</common_name>
 970                                                 <rank>family</rank>
 971                                               </taxonomy>
 972                                               <clade>
 973                                                 <name>FUGRU</name>
 974                                                 <taxonomy>
 975                                                   <id provider="uniprot">31033</id>
 976                                                   <code>FUGRU</code>
 977                                                   <scientific_name>Takifugu rubripes</scientific_name>
 978                                                   <common_name>Japanese pufferfish</common_name>
 979                                                   <synonym>Fugu rubripes</synonym>
 980                                                   <rank>species</rank>
 981                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 982                                                 </taxonomy>
 983                                               </clade>
 984                                               <clade>
 985                                                 <name>TETNG</name>
 986                                                 <taxonomy>
 987                                                   <id provider="uniprot">99883</id>
 988                                                   <code>TETNG</code>
 989                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 990                                                   <common_name>Green puffer</common_name>
 991                                                   <synonym>Chelonodon nigroviridis</synonym>
 992                                                   <rank>species</rank>
 993                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 994                                                 </taxonomy>
 995                                               </clade>
 996                                             </clade>
 997                                           </clade>
 998                                           <clade>
 999                                             <taxonomy>
1000                                               <id provider="uniprot">8049</id>
1001                                               <code>GADMO</code>
1002                                               <scientific_name>Gadus morhua</scientific_name>
1003                                               <common_name>Atlantic cod</common_name>
1004                                               <rank>species</rank>
1005                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
1006                                             </taxonomy>
1007                                           </clade>
1008                                         </clade>
1009                                         <clade>
1010                                           <name>DANRE</name>
1011                                           <taxonomy>
1012                                             <id provider="uniprot">7955</id>
1013                                             <code>DANRE</code>
1014                                             <scientific_name>Danio rerio</scientific_name>
1015                                             <common_name>Zebrafish</common_name>
1016                                             <synonym>Brachydanio rerio</synonym>
1017                                             <rank>species</rank>
1018                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1019                                           </taxonomy>
1020                                         </clade>
1021                                       </clade>
1022                                     </clade>
1023                                     <clade>
1024                                       <taxonomy>
1025                                         <id provider="uniprot">7868</id>
1026                                         <code>CALMI</code>
1027                                         <scientific_name>Callorhynchus milii</scientific_name>
1028                                         <common_name>Australian ghost shark</common_name>
1029                                         <synonym>Australian ghost shark</synonym>
1030                                         <rank>species</rank>
1031                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1032                                       </taxonomy>
1033                                     </clade>
1034                                   </clade>
1035                                   <clade>
1036                                     <taxonomy>
1037                                       <id provider="uniprot">7757</id>
1038                                       <code>PETMA</code>
1039                                       <scientific_name>Petromyzon marinus</scientific_name>
1040                                       <common_name>Sea lamprey</common_name>
1041                                       <rank>species</rank>
1042                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1043                                     </taxonomy>
1044                                   </clade>
1045                                 </clade>
1046                                 <clade>
1047                                   <name>Urochordata</name>
1048                                   <taxonomy>
1049                                     <id provider="uniprot">7712</id>
1050                                     <scientific_name>Urochordata</scientific_name>
1051                                     <rank>subphylum</rank>
1052                                   </taxonomy>
1053                                   <clade>
1054                                     <taxonomy>
1055                                       <id provider="uniprot">7718</id>
1056                                       <scientific_name>Ciona</scientific_name>
1057                                       <rank>genus</rank>
1058                                     </taxonomy>
1059                                     <clade>
1060                                       <name>CIOIN</name>
1061                                       <taxonomy>
1062                                         <id provider="uniprot">7719</id>
1063                                         <code>CIOIN</code>
1064                                         <scientific_name>Ciona intestinalis</scientific_name>
1065                                         <common_name>Transparent sea squirt</common_name>
1066                                         <synonym>Ascidia intestinalis</synonym>
1067                                         <rank>species</rank>
1068                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1069                                       </taxonomy>
1070                                     </clade>
1071                                     <clade>
1072                                       <name>CIOSA</name>
1073                                       <taxonomy>
1074                                         <id provider="uniprot">51511</id>
1075                                         <code>CIOSA</code>
1076                                         <scientific_name>Ciona savignyi</scientific_name>
1077                                         <common_name>Pacific transparent sea squirt</common_name>
1078                                         <rank>species</rank>
1079                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1080                                       </taxonomy>
1081                                     </clade>
1082                                   </clade>
1083                                   <clade>
1084                                     <name>OIKDI</name>
1085                                     <taxonomy>
1086                                       <id provider="ncbi">34765</id>
1087                                       <code>OIKDI</code>
1088                                       <scientific_name>Oikopleura dioica</scientific_name>
1089                                       <common_name>Tunicate</common_name>
1090                                       <rank>species</rank>
1091                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1092                                     </taxonomy>
1093                                   </clade>
1094                                 </clade>
1095                               </clade>
1096                               <clade>
1097                                 <name>BRAFL</name>
1098                                 <taxonomy>
1099                                   <id provider="uniprot">7739</id>
1100                                   <code>BRAFL</code>
1101                                   <scientific_name>Branchiostoma floridae</scientific_name>
1102                                   <common_name>Florida lancelet</common_name>
1103                                   <synonym>Amphioxus</synonym>
1104                                   <rank>species</rank>
1105                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1106                                 </taxonomy>
1107                               </clade>
1108                             </clade>
1109                             <clade>
1110                               <name>Hemichordata &amp; Echinodermata</name>
1111                               <clade>
1112                                 <name>SACKO</name>
1113                                 <taxonomy>
1114                                   <id provider="uniprot">10224</id>
1115                                   <code>SACKO</code>
1116                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1117                                   <authority>Agassiz, 1873</authority>
1118                                   <common_name>Acorn worm</common_name>
1119                                   <rank>species</rank>
1120                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1121                                 </taxonomy>
1122                               </clade>
1123                               <clade>
1124                                 <name>STRPU</name>
1125                                 <taxonomy>
1126                                   <id provider="uniprot">7668</id>
1127                                   <code>STRPU</code>
1128                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1129                                   <common_name>Purple sea urchin</common_name>
1130                                   <rank>species</rank>
1131                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1132                                 </taxonomy>
1133                               </clade>
1134                             </clade>
1135                           </clade>
1136                           <clade>
1137                             <name>Protostomia</name>
1138                             <clade>
1139                               <name>Ecdysozoa</name>
1140                               <clade>
1141                                 <taxonomy>
1142                                   <id provider="uniprot">6656</id>
1143                                   <scientific_name>Arthropoda</scientific_name>
1144                                   <rank>phylum</rank>
1145                                 </taxonomy>
1146                                 <clade>
1147                                   <taxonomy>
1148                                     <id provider="uniprot">197563</id>
1149                                     <scientific_name>Mandibulata</scientific_name>
1150                                   </taxonomy>
1151                                   <clade>
1152                                     <name>Pancrustacea</name>
1153                                     <clade>
1154                                       <taxonomy>
1155                                         <id provider="uniprot">33340</id>
1156                                         <scientific_name>Neoptera</scientific_name>
1157                                         <rank>subclass</rank>
1158                                       </taxonomy>
1159                                       <clade>
1160                                         <taxonomy>
1161                                           <id provider="uniprot">33392</id>
1162                                           <scientific_name>Endopterygota</scientific_name>
1163                                           <rank>infraclass</rank>
1164                                         </taxonomy>
1165                                         <clade>
1166                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1167                                           <clade>
1168                                             <name>Lepidoptera &amp; Diptera</name>
1169                                             <clade>
1170                                               <taxonomy>
1171                                                 <id provider="uniprot">7147</id>
1172                                                 <scientific_name>Diptera</scientific_name>
1173                                                 <rank>order</rank>
1174                                               </taxonomy>
1175                                               <clade>
1176                                                 <taxonomy>
1177                                                   <id provider="uniprot">7157</id>
1178                                                   <scientific_name>Culicidae</scientific_name>
1179                                                   <common_name>mosquitos</common_name>
1180                                                   <rank>family</rank>
1181                                                 </taxonomy>
1182                                                 <clade>
1183                                                   <name>AEDAE</name>
1184                                                   <taxonomy>
1185                                                     <id provider="uniprot">7159</id>
1186                                                     <code>AEDAE</code>
1187                                                     <scientific_name>Aedes aegypti</scientific_name>
1188                                                     <common_name>Yellowfever mosquito</common_name>
1189                                                     <synonym>Culex aegypti</synonym>
1190                                                     <rank>species</rank>
1191                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1192                                                   </taxonomy>
1193                                                 </clade>
1194                                                 <clade>
1195                                                   <name>ANOGA</name>
1196                                                   <taxonomy>
1197                                                     <id provider="uniprot">7165</id>
1198                                                     <code>ANOGA</code>
1199                                                     <scientific_name>Anopheles gambiae</scientific_name>
1200                                                     <common_name>African malaria mosquito</common_name>
1201                                                     <rank>species</rank>
1202                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1203                                                   </taxonomy>
1204                                                 </clade>
1205                                                 <clade>
1206                                                   <name>CULPI</name>
1207                                                   <taxonomy>
1208                                                     <id provider="uniprot">7175</id>
1209                                                     <code>CULPI</code>
1210                                                     <scientific_name>Culex pipiens</scientific_name>
1211                                                     <common_name>House mosquito</common_name>
1212                                                     <rank>species</rank>
1213                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1214                                                   </taxonomy>
1215                                                 </clade>
1216                                               </clade>
1217                                               <clade>
1218                                                 <taxonomy>
1219                                                   <id provider="uniprot">32341</id>
1220                                                   <scientific_name>Sophophora</scientific_name>
1221                                                   <rank>subgenus</rank>
1222                                                 </taxonomy>
1223                                                 <clade>
1224                                                   <name>DROME</name>
1225                                                   <taxonomy>
1226                                                     <id provider="uniprot">7227</id>
1227                                                     <code>DROME</code>
1228                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1229                                                     <common_name>Fruit fly</common_name>
1230                                                     <rank>species</rank>
1231                                                   </taxonomy>
1232                                                 </clade>
1233                                                 <clade>
1234                                                   <name>DROPS</name>
1235                                                   <taxonomy>
1236                                                     <id provider="uniprot">46245</id>
1237                                                     <code>DROPS</code>
1238                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1239                                                     <common_name>Fruit fly</common_name>
1240                                                     <rank>subspecies</rank>
1241                                                   </taxonomy>
1242                                                 </clade>
1243                                               </clade>
1244                                             </clade>
1245                                             <clade>
1246                                               <name>BOMMO</name>
1247                                               <taxonomy>
1248                                                 <id provider="uniprot">7091</id>
1249                                                 <code>BOMMO</code>
1250                                                 <scientific_name>Bombyx mori</scientific_name>
1251                                                 <common_name>Silk moth</common_name>
1252                                                 <rank>species</rank>
1253                                               </taxonomy>
1254                                             </clade>
1255                                           </clade>
1256                                           <clade>
1257                                             <taxonomy>
1258                                               <id provider="uniprot">7400</id>
1259                                               <scientific_name>Apocrita</scientific_name>
1260                                               <common_name>wasps, ants and bees</common_name>
1261                                             </taxonomy>
1262                                             <clade>
1263                                               <name>APIME</name>
1264                                               <taxonomy>
1265                                                 <id provider="uniprot">7460</id>
1266                                                 <code>APIME</code>
1267                                                 <scientific_name>Apis mellifera</scientific_name>
1268                                                 <common_name>Honeybee</common_name>
1269                                                 <rank>species</rank>
1270                                               </taxonomy>
1271                                             </clade>
1272                                             <clade>
1273                                               <name>NASVI</name>
1274                                               <taxonomy>
1275                                                 <id provider="uniprot">7425</id>
1276                                                 <code>NASVI</code>
1277                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1278                                                 <common_name>Parasitic wasp</common_name>
1279                                                 <rank>species</rank>
1280                                               </taxonomy>
1281                                             </clade>
1282                                           </clade>
1283                                         </clade>
1284                                         <clade>
1285                                           <name>TRICA</name>
1286                                           <taxonomy>
1287                                             <id provider="uniprot">7070</id>
1288                                             <code>TRICA</code>
1289                                             <scientific_name>Tribolium castaneum</scientific_name>
1290                                             <common_name>Red flour beetle</common_name>
1291                                             <rank>species</rank>
1292                                           </taxonomy>
1293                                         </clade>
1294                                       </clade>
1295                                       <clade>
1296                                         <taxonomy>
1297                                           <id provider="uniprot">7524</id>
1298                                           <scientific_name>Hemiptera</scientific_name>
1299                                           <rank>order</rank>
1300                                         </taxonomy>
1301                                         <clade>
1302                                           <name>ACYPI</name>
1303                                           <taxonomy>
1304                                             <id provider="uniprot">7029</id>
1305                                             <code>ACYPI</code>
1306                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1307                                             <common_name>Pea aphid</common_name>
1308                                             <rank>species</rank>
1309                                           </taxonomy>
1310                                         </clade>
1311                                         <clade>
1312                                           <name>RHOPR</name>
1313                                           <taxonomy>
1314                                             <id provider="uniprot">13249</id>
1315                                             <code>RHOPR</code>
1316                                             <scientific_name>Rhodnius prolixus</scientific_name>
1317                                             <common_name>Triatomid bug</common_name>
1318                                             <rank>species</rank>
1319                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1320                                           </taxonomy>
1321                                         </clade>
1322                                       </clade>
1323                                     </clade>
1324                                     <clade>
1325                                       <taxonomy>
1326                                         <id provider="uniprot">6658</id>
1327                                         <scientific_name>Branchiopoda</scientific_name>
1328                                         <rank>class</rank>
1329                                       </taxonomy>
1330                                       <clade>
1331                                         <taxonomy>
1332                                           <id provider="uniprot">6661</id>
1333                                           <code>ARTSF</code>
1334                                           <scientific_name>Artemia franciscana</scientific_name>
1335                                           <common_name>Brine shrimp</common_name>
1336                                           <synonym>Artemia sanfranciscana</synonym>
1337                                           <rank>species</rank>
1338                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1339                                         </taxonomy>
1340                                       </clade>
1341                                       <clade>
1342                                         <name>DAPPU</name>
1343                                         <taxonomy>
1344                                           <id provider="uniprot">6669</id>
1345                                           <code>DAPPU</code>
1346                                           <scientific_name>Daphnia pulex</scientific_name>
1347                                           <common_name>Water flea</common_name>
1348                                           <rank>species</rank>
1349                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1350                                         </taxonomy>
1351                                       </clade>
1352                                     </clade>
1353                                   </clade>
1354                                   <clade>
1355                                     <taxonomy>
1356                                       <id provider="uniprot">61985</id>
1357                                       <scientific_name>Myriapoda</scientific_name>
1358                                       <rank>subphylum</rank>
1359                                     </taxonomy>
1360                                     <clade>
1361                                       <taxonomy>
1362                                         <id provider="uniprot">7553</id>
1363                                         <scientific_name>Diplopoda</scientific_name>
1364                                         <common_name>millipedes</common_name>
1365                                         <rank>class</rank>
1366                                       </taxonomy>
1367                                       <clade>
1368                                         <taxonomy>
1369                                           <id provider="uniprot">118561</id>
1370                                           <scientific_name>Helminthomorpha</scientific_name>
1371                                           <rank>subclass</rank>
1372                                         </taxonomy>
1373                                         <clade>
1374                                           <taxonomy>
1375                                             <id provider="uniprot">364406</id>
1376                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1377                                             <rank>species</rank>
1378                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1379                                           </taxonomy>
1380                                         </clade>
1381                                         <clade>
1382                                           <taxonomy>
1383                                             <id provider="uniprot">174156</id>
1384                                             <code>NARAN</code>
1385                                             <scientific_name>Narceus annularis</scientific_name>
1386                                             <common_name>Millipede</common_name>
1387                                             <rank>species</rank>
1388                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1389                                           </taxonomy>
1390                                         </clade>
1391                                       </clade>
1392                                       <clade>
1393                                         <taxonomy>
1394                                           <id provider="uniprot">52428</id>
1395                                           <scientific_name>Polyxenus lagurus</scientific_name>
1396                                           <common_name>bristly millipede</common_name>
1397                                           <rank>species</rank>
1398                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1399                                         </taxonomy>
1400                                       </clade>
1401                                     </clade>
1402                                     <clade>
1403                                       <taxonomy>
1404                                         <id provider="uniprot">7540</id>
1405                                         <scientific_name>Chilopoda</scientific_name>
1406                                         <common_name>centipedes</common_name>
1407                                         <rank>class</rank>
1408                                       </taxonomy>
1409                                       <clade>
1410                                         <taxonomy>
1411                                           <id provider="uniprot">29022</id>
1412                                           <code>SCUCO</code>
1413                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1414                                           <common_name>House centipede</common_name>
1415                                           <rank>species</rank>
1416                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1417                                         </taxonomy>
1418                                       </clade>
1419                                       <clade>
1420                                         <taxonomy>
1421                                           <id provider="uniprot">126957</id>
1422                                           <scientific_name>Strigamia maritima</scientific_name>
1423                                           <rank>species</rank>
1424                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1425                                         </taxonomy>
1426                                       </clade>
1427                                     </clade>
1428                                   </clade>
1429                                 </clade>
1430                                 <clade>
1431                                   <name>IXOSC</name>
1432                                   <taxonomy>
1433                                     <id provider="uniprot">6945</id>
1434                                     <code>IXOSC</code>
1435                                     <scientific_name>Ixodes scapularis</scientific_name>
1436                                     <common_name>Black-legged tick</common_name>
1437                                     <synonym>Deer tick</synonym>
1438                                     <rank>species</rank>
1439                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1440                                   </taxonomy>
1441                                 </clade>
1442                               </clade>
1443                               <clade>
1444                                 <taxonomy>
1445                                   <id provider="uniprot">119089</id>
1446                                   <scientific_name>Chromadorea</scientific_name>
1447                                   <rank>class</rank>
1448                                 </taxonomy>
1449                                 <reference doi="10.1038/32160">
1450                                 </reference>
1451                                 <clade>
1452                                   <name>nematode Clade V</name>
1453                                   <clade>
1454                                     <name>Caenorhabditis</name>
1455                                     <taxonomy>
1456                                       <id provider="uniprot">6237</id>
1457                                       <scientific_name>Caenorhabditis</scientific_name>
1458                                       <rank>genus</rank>
1459                                     </taxonomy>
1460                                     <clade>
1461                                       <name>CAEBR</name>
1462                                       <taxonomy>
1463                                         <id provider="uniprot">6238</id>
1464                                         <code>CAEBR</code>
1465                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1466                                         <rank>species</rank>
1467                                       </taxonomy>
1468                                     </clade>
1469                                     <clade>
1470                                       <name>CAEEL</name>
1471                                       <taxonomy>
1472                                         <id provider="uniprot">6239</id>
1473                                         <code>CAEEL</code>
1474                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1475                                         <rank>species</rank>
1476                                       </taxonomy>
1477                                     </clade>
1478                                   </clade>
1479                                   <clade>
1480                                     <name>PRIPA</name>
1481                                     <taxonomy>
1482                                       <id provider="uniprot">54126</id>
1483                                       <code>PRIPA</code>
1484                                       <scientific_name>Pristionchus pacificus</scientific_name>
1485                                       <rank>species</rank>
1486                                     </taxonomy>
1487                                   </clade>
1488                                 </clade>
1489                                 <clade>
1490                                   <name>BRUMA</name>
1491                                   <taxonomy>
1492                                     <id provider="uniprot">6279</id>
1493                                     <code>BRUMA</code>
1494                                     <scientific_name>Brugia malayi</scientific_name>
1495                                     <common_name>Filarial nematode worm</common_name>
1496                                     <rank>species</rank>
1497                                   </taxonomy>
1498                                 </clade>
1499                               </clade>
1500                             </clade>
1501                             <clade>
1502                               <name>Lophotrochozoa</name>
1503                               <clade>
1504                                 <name>Annelida &amp; Mollusca</name>
1505                                 <clade>
1506                                   <taxonomy>
1507                                     <id provider="uniprot">6340</id>
1508                                     <scientific_name>Annelida</scientific_name>
1509                                     <rank>phylum</rank>
1510                                   </taxonomy>
1511                                   <clade>
1512                                     <name>CAP</name>
1513                                     <taxonomy>
1514                                       <id provider="uniprot">283909</id>
1515                                       <scientific_name>Capitella teleta</scientific_name>
1516                                       <authority>Blake, Grassle &amp; Eckelbarger, 2009</authority>
1517                                       <synonym>Capitella sp. I</synonym>
1518                                       <rank>species</rank>
1519                                       <uri>http://genome.jgi-psf.org/Capca1/capitella.jpg</uri>
1520                                     </taxonomy>
1521                                   </clade>
1522                                   <clade>
1523                                     <taxonomy>
1524                                       <id provider="uniprot">6412</id>
1525                                       <code>HELRO</code>
1526                                       <scientific_name>Helobdella robusta</scientific_name>
1527                                       <common_name>Californian leech</common_name>
1528                                       <rank>species</rank>
1529                                       <uri>http://genome.jgi-psf.org/Helro1/Helro_leech.jpg</uri>
1530                                     </taxonomy>
1531                                   </clade>
1532                                 </clade>
1533                                 <clade>
1534                                   <taxonomy>
1535                                     <id provider="uniprot">6447</id>
1536                                     <scientific_name>Mollusca</scientific_name>
1537                                     <rank>phylum</rank>
1538                                   </taxonomy>
1539                                   <clade>
1540                                     <taxonomy>
1541                                       <id provider="uniprot">6448</id>
1542                                       <scientific_name>Gastropoda</scientific_name>
1543                                       <rank>class</rank>
1544                                     </taxonomy>
1545                                     <clade>
1546                                       <taxonomy>
1547                                         <id provider="uniprot">225164</id>
1548                                         <code>LOTGI</code>
1549                                         <scientific_name>Lottia gigantea</scientific_name>
1550                                         <common_name>Owl limpet</common_name>
1551                                         <rank>species</rank>
1552                                         <uri>http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg</uri>
1553                                       </taxonomy>
1554                                     </clade>
1555                                     <clade>
1556                                       <taxonomy>
1557                                         <id provider="uniprot">6500</id>
1558                                         <code>APLCA</code>
1559                                         <scientific_name>Aplysia californica</scientific_name>
1560                                         <common_name>California sea hare</common_name>
1561                                         <rank>species</rank>
1562                                         <uri>http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg</uri>
1563                                       </taxonomy>
1564                                     </clade>
1565                                   </clade>
1566                                   <clade>
1567                                     <taxonomy>
1568                                       <id provider="uniprot">29159</id>
1569                                       <code>CRAGI</code>
1570                                       <scientific_name>Crassostrea gigas</scientific_name>
1571                                       <authority>Thunberg, 1793</authority>
1572                                       <common_name>Pacific oyster</common_name>
1573                                       <synonym>Crassotrea gigas</synonym>
1574                                       <synonym>Crassostrea angulata</synonym>
1575                                       <synonym>Ostrea gigas</synonym>
1576                                       <rank>species</rank>
1577                                       <uri>http://www.marlin.ac.uk/imgs/o_cragig.jpg</uri>
1578                                     </taxonomy>
1579                                   </clade>
1580                                 </clade>
1581                               </clade>
1582                               <clade>
1583                                 <taxonomy>
1584                                   <id provider="uniprot">6157</id>
1585                                   <scientific_name>Platyhelminthes</scientific_name>
1586                                   <rank>phylum</rank>
1587                                 </taxonomy>
1588                                 <clade>
1589                                   <name>SCHMA</name>
1590                                   <taxonomy>
1591                                     <id provider="uniprot">6183</id>
1592                                     <code>SCHMA</code>
1593                                     <scientific_name>Schistosoma mansoni</scientific_name>
1594                                     <common_name>Blood fluke</common_name>
1595                                     <rank>species</rank>
1596                                   </taxonomy>
1597                                 </clade>
1598                                 <clade>
1599                                   <name>SCHMD</name>
1600                                   <taxonomy>
1601                                     <id provider="uniprot">79327</id>
1602                                     <code>SCHMD</code>
1603                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1604                                     <common_name>Freshwater planarian flatworm</common_name>
1605                                     <rank>species</rank>
1606                                   </taxonomy>
1607                                 </clade>
1608                               </clade>
1609                             </clade>
1610                           </clade>
1611                         </clade>
1612                         <clade>
1613                           <name>Cnidaria</name>
1614                           <taxonomy>
1615                             <id provider="uniprot">6073</id>
1616                             <scientific_name>Cnidaria</scientific_name>
1617                             <rank>phylum</rank>
1618                           </taxonomy>
1619                           <clade>
1620                             <taxonomy>
1621                               <id provider="uniprot">6102</id>
1622                               <scientific_name>Hexacorallia</scientific_name>
1623                               <synonym>Ceriantipatharia</synonym>
1624                               <synonym>Zoantharia</synonym>
1625                               <rank>subclass</rank>
1626                             </taxonomy>
1627                             <clade>
1628                               <taxonomy>
1629                                 <id provider="uniprot">45351</id>
1630                                 <code>NEMVE</code>
1631                                 <scientific_name>Nematostella vectensis</scientific_name>
1632                                 <common_name>Starlet sea anemone</common_name>
1633                                 <rank>species</rank>
1634                               </taxonomy>
1635                             </clade>
1636                             <clade>
1637                               <taxonomy>
1638                                 <id provider="uniprot">70779</id>
1639                                 <code>ACRDI</code>
1640                                 <scientific_name>Acropora digitifera</scientific_name>
1641                                 <common_name>Staghorn coral</common_name>
1642                                 <rank>species</rank>
1643                                 <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
1644                               </taxonomy>
1645                             </clade>
1646                           </clade>
1647                           <clade>
1648                             <name>HYDMA</name>
1649                             <taxonomy>
1650                               <id provider="eol">9119928</id>
1651                               <code>HYDMA</code>
1652                               <scientific_name>Hydra magnipapillata</scientific_name>
1653                               <authority>Ito, 1947</authority>
1654                               <rank>species</rank>
1655                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1656                             </taxonomy>
1657                           </clade>
1658                         </clade>
1659                       </clade>
1660                       <clade>
1661                         <name>TRIAD</name>
1662                         <taxonomy>
1663                           <id provider="uniprot">10228</id>
1664                           <code>TRIAD</code>
1665                           <scientific_name>Trichoplax adhaerens</scientific_name>
1666                           <synonym>Trichoplax reptans</synonym>
1667                           <rank>species</rank>
1668                         </taxonomy>
1669                         <reference doi="10.1073/pnas.0602076103">
1670                         </reference>
1671                       </clade>
1672                     </clade>
1673                     <clade>
1674                       <name>AMPQU</name>
1675                       <taxonomy>
1676                         <id provider="uniprot">400682</id>
1677                         <code>AMPQU</code>
1678                         <scientific_name>Amphimedon queenslandica</scientific_name>
1679                         <rank>species</rank>
1680                       </taxonomy>
1681                     </clade>
1682                   </clade>
1683                   <clade>
1684                     <taxonomy>
1685                       <id provider="uniprot">81524</id>
1686                       <scientific_name>Codonosigidae</scientific_name>
1687                       <rank>family</rank>
1688                     </taxonomy>
1689                     <clade>
1690                       <name>MONBE</name>
1691                       <taxonomy>
1692                         <id provider="uniprot">81824</id>
1693                         <code>MONBE</code>
1694                         <scientific_name>Monosiga brevicollis</scientific_name>
1695                         <common_name>Choanoflagellate</common_name>
1696                         <rank>species</rank>
1697                       </taxonomy>
1698                     </clade>
1699                     <clade>
1700                       <taxonomy>
1701                         <id provider="uniprot">946362</id>
1702                         <code>SALS5</code>
1703                         <scientific_name>Salpingoeca rosetta</scientific_name>
1704                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1705                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1706                         <rank>species</rank>
1707                       </taxonomy>
1708                     </clade>
1709                   </clade>
1710                 </clade>
1711                 <clade>
1712                   <name>Ichthyophonida &amp; Filasterea</name>
1713                   <clade>
1714                     <taxonomy>
1715                       <id provider="uniprot">198625</id>
1716                       <scientific_name>Ichthyophonida</scientific_name>
1717                       <rank>order</rank>
1718                     </taxonomy>
1719                     <clade>
1720                       <taxonomy>
1721                         <id provider="uniprot">4881</id>
1722                         <code>AMOPA</code>
1723                         <scientific_name>Amoebidium parasiticum</scientific_name>
1724                         <rank>species</rank>
1725                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1726                       </taxonomy>
1727                     </clade>
1728                     <clade>
1729                       <name>SPHARC</name>
1730                       <taxonomy>
1731                         <id provider="uniprot">72019</id>
1732                         <scientific_name>Sphaeroforma arctica</scientific_name>
1733                         <rank>species</rank>
1734                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1735                       </taxonomy>
1736                     </clade>
1737                   </clade>
1738                   <clade>
1739                     <taxonomy>
1740                       <scientific_name>Filasterea</scientific_name>
1741                     </taxonomy>
1742                     <reference doi="10.1371/journal.pone.0002098">
1743                     </reference>
1744                     <reference>
1745                     </reference>
1746                     <clade>
1747                       <name>CAPOWC</name>
1748                       <taxonomy>
1749                         <id provider="uniprot">192875</id>
1750                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1751                         <rank>species</rank>
1752                       </taxonomy>
1753                     </clade>
1754                     <clade>
1755                       <name>MINVIB</name>
1756                       <taxonomy>
1757                         <id provider="uniprot">134558</id>
1758                         <scientific_name>Ministeria vibrans</scientific_name>
1759                         <rank>species</rank>
1760                       </taxonomy>
1761                     </clade>
1762                   </clade>
1763                 </clade>
1764               </clade>
1765               <clade>
1766                 <taxonomy>
1767                   <scientific_name>Holomycota</scientific_name>
1768                   <synonym>Nucletmycea</synonym>
1769                 </taxonomy>
1770                 <clade>
1771                   <taxonomy>
1772                     <id provider="uniprot">4751</id>
1773                     <scientific_name>Fungi</scientific_name>
1774                     <rank>kingdom</rank>
1775                   </taxonomy>
1776                   <clade>
1777                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
1778                     <clade>
1779                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1780                       <clade>
1781                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1782                         <clade>
1783                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1784                           <clade>
1785                             <name>Dikarya &amp; Mucoromycotina</name>
1786                             <clade>
1787                               <taxonomy>
1788                                 <id provider="uniprot">451864</id>
1789                                 <scientific_name>Dikarya</scientific_name>
1790                                 <rank>subkingdom</rank>
1791                               </taxonomy>
1792                               <reference doi="10.1038/nature05110">
1793                               </reference>
1794                               <reference>
1795                               </reference>
1796                               <clade>
1797                                 <taxonomy>
1798                                   <id provider="uniprot">4890</id>
1799                                   <scientific_name>Ascomycota</scientific_name>
1800                                   <rank>phylum</rank>
1801                                 </taxonomy>
1802                                 <clade>
1803                                   <name>Pezizomycotina_Saccharomycetales</name>
1804                                   <clade>
1805                                     <taxonomy>
1806                                       <id provider="uniprot">147538</id>
1807                                       <scientific_name>Pezizomycotina</scientific_name>
1808                                       <synonym>Euascomycota</synonym>
1809                                       <rank>subphylum</rank>
1810                                     </taxonomy>
1811                                     <reference doi="0.3852/mycologia.98.6.1018">
1812                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>
1813                                     </reference>
1814                                     <reference>
1815                                     </reference>
1816                                     <clade>
1817                                       <taxonomy>
1818                                         <id provider="uniprot">716546</id>
1819                                         <scientific_name>Leotiomyceta</scientific_name>
1820                                       </taxonomy>
1821                                       <clade>
1822                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1823                                         <clade>
1824                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1825                                           <clade>
1826                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>
1827                                             <clade>
1828                                               <taxonomy>
1829                                                 <id provider="uniprot">715989</id>
1830                                                 <scientific_name>Sordariomyceta</scientific_name>
1831                                               </taxonomy>
1832                                               <clade>
1833                                                 <taxonomy>
1834                                                   <id provider="uniprot">147550</id>
1835                                                   <scientific_name>Sordariomycetes</scientific_name>
1836                                                   <rank>class</rank>
1837                                                 </taxonomy>
1838                                                 <clade>
1839                                                   <name>Magnaporthales &amp; Hypocreales</name>
1840                                                   <clade>
1841                                                     <taxonomy>
1842                                                       <id provider="uniprot">5125</id>
1843                                                       <scientific_name>Hypocreales</scientific_name>
1844                                                       <rank>order</rank>
1845                                                     </taxonomy>
1846                                                     <clade>
1847                                                       <name>ACRALC</name>
1848                                                       <taxonomy>
1849                                                         <id provider="uniprot">398408</id>
1850                                                         <scientific_name>Acremonium alcalophilum</scientific_name>
1851                                                         <rank>species</rank>
1852                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1853                                                       </taxonomy>
1854                                                     </clade>
1855                                                     <clade>
1856                                                       <name>GIBZE</name>
1857                                                       <taxonomy>
1858                                                         <id provider="uniprot">5518</id>
1859                                                         <code>GIBZE</code>
1860                                                         <scientific_name>Gibberella zeae</scientific_name>
1861                                                         <common_name>Wheat head blight fungus</common_name>
1862                                                         <synonym>Fusarium graminearum</synonym>
1863                                                         <rank>species</rank>
1864                                                       </taxonomy>
1865                                                     </clade>
1866                                                     <clade>
1867                                                       <name>TRIVE</name>
1868                                                       <taxonomy>
1869                                                         <id provider="uniprot">29875</id>
1870                                                         <code>TRIVE</code>
1871                                                         <scientific_name>Trichoderma virens</scientific_name>
1872                                                         <common_name>Gliocladium virens</common_name>
1873                                                         <synonym>Trichoderma virens</synonym>
1874                                                         <rank>species</rank>
1875                                                       </taxonomy>
1876                                                     </clade>
1877                                                   </clade>
1878                                                   <clade>
1879                                                     <name>MAGGR</name>
1880                                                     <taxonomy>
1881                                                       <id provider="uniprot">148305</id>
1882                                                       <code>MAGGR</code>
1883                                                       <scientific_name>Magnaporthe grisea</scientific_name>
1884                                                       <common_name>Rice blast fungus</common_name>
1885                                                       <synonym>Pyricularia grisea</synonym>
1886                                                       <rank>species</rank>
1887                                                     </taxonomy>
1888                                                   </clade>
1889                                                 </clade>
1890                                                 <clade>
1891                                                   <taxonomy>
1892                                                     <id provider="uniprot">5139</id>
1893                                                     <scientific_name>Sordariales</scientific_name>
1894                                                     <rank>order</rank>
1895                                                   </taxonomy>
1896                                                   <clade>
1897                                                     <taxonomy>
1898                                                       <id provider="uniprot">35718</id>
1899                                                       <scientific_name>Chaetomiaceae</scientific_name>
1900                                                       <rank>family</rank>
1901                                                     </taxonomy>
1902                                                     <clade>
1903                                                       <taxonomy>
1904                                                         <id provider="uniprot">35719</id>
1905                                                         <scientific_name>Thielavia</scientific_name>
1906                                                         <rank>genus</rank>
1907                                                       </taxonomy>
1908                                                       <clade>
1909                                                         <name>MYCTHE</name>
1910                                                         <taxonomy>
1911                                                           <id provider="uniprot">573728</id>
1912                                                           <scientific_name>Myceliophthora thermophila</scientific_name>
1913                                                           <authority>(Apinis) Oorschot 1977</authority>
1914                                                           <synonym>Sporotrichum thermophilum</synonym>
1915                                                           <synonym>anamorph of Thielavia heterothallica</synonym>
1916                                                           <rank>species</rank>
1917                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1918                                                         </taxonomy>
1919                                                       </clade>
1920                                                       <clade>
1921                                                         <name>THITER</name>
1922                                                         <taxonomy>
1923                                                           <id provider="eol">193532</id>
1924                                                           <scientific_name>Thielavia terrestris</scientific_name>
1925                                                           <authority>Malloch &amp; Cain 1972</authority>
1926                                                           <synonym>Acremonium alabamense</synonym>
1927                                                           <rank>species</rank>
1928                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1929                                                         </taxonomy>
1930                                                       </clade>
1931                                                     </clade>
1932                                                     <clade>
1933                                                       <name>CHAGB</name>
1934                                                       <taxonomy>
1935                                                         <id provider="eol">1029505</id>
1936                                                         <code>CHAGB</code>
1937                                                         <scientific_name>Chaetomium globosum</scientific_name>
1938                                                         <authority>Kunze 1817</authority>
1939                                                         <common_name>Soil fungus</common_name>
1940                                                         <rank>species</rank>
1941                                                       </taxonomy>
1942                                                     </clade>
1943                                                   </clade>
1944                                                   <clade>
1945                                                     <name>NEUCR</name>
1946                                                     <taxonomy>
1947                                                       <id provider="uniprot">5141</id>
1948                                                       <code>NEUCR</code>
1949                                                       <scientific_name>Neurospora crassa</scientific_name>
1950                                                       <rank>species</rank>
1951                                                     </taxonomy>
1952                                                   </clade>
1953                                                 </clade>
1954                                               </clade>
1955                                               <clade>
1956                                                 <taxonomy>
1957                                                   <id provider="uniprot">147548</id>
1958                                                   <scientific_name>Leotiomycetes</scientific_name>
1959                                                   <rank>class</rank>
1960                                                 </taxonomy>
1961                                                 <clade>
1962                                                   <taxonomy>
1963                                                     <id provider="uniprot">28983</id>
1964                                                     <scientific_name>Sclerotiniaceae</scientific_name>
1965                                                     <rank>family</rank>
1966                                                   </taxonomy>
1967                                                   <clade>
1968                                                     <taxonomy>
1969                                                       <id provider="uniprot">40559</id>
1970                                                       <code>BOTFU</code>
1971                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>
1972                                                       <common_name>Noble rot fungus</common_name>
1973                                                       <synonym>Botrytis cinerea</synonym>
1974                                                       <rank>species</rank>
1975                                                     </taxonomy>
1976                                                   </clade>
1977                                                   <clade>
1978                                                     <taxonomy>
1979                                                       <id provider="uniprot">5180</id>
1980                                                       <code>SCLSC</code>
1981                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>
1982                                                       <common_name>White mold</common_name>
1983                                                       <synonym>Whetzelinia sclerotiorum</synonym>
1984                                                       <rank>species</rank>
1985                                                     </taxonomy>
1986                                                   </clade>
1987                                                 </clade>
1988                                                 <clade>
1989                                                   <name>OIDMAI</name>
1990                                                   <taxonomy>
1991                                                     <id provider="uniprot">78148</id>
1992                                                     <scientific_name>Oidiodendron maius</scientific_name>
1993                                                     <rank>species</rank>
1994                                                   </taxonomy>
1995                                                 </clade>
1996                                               </clade>
1997                                             </clade>
1998                                             <clade>
1999                                               <taxonomy>
2000                                                 <id provider="uniprot">388435</id>
2001                                                 <scientific_name>Lecanoromycetidae</scientific_name>
2002                                                 <rank>subclass</rank>
2003                                               </taxonomy>
2004                                               <clade>
2005                                                 <name>CLAGRA</name>
2006                                                 <taxonomy>
2007                                                   <id provider="uniprot">27339</id>
2008                                                   <scientific_name>Cladonia grayi</scientific_name>
2009                                                   <synonym>Cladonia grayi Merr</synonym>
2010                                                   <rank>species</rank>
2011                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
2012                                                 </taxonomy>
2013                                               </clade>
2014                                               <clade>
2015                                                 <name>XANPAR</name>
2016                                                 <taxonomy>
2017                                                   <id provider="uniprot">107463</id>
2018                                                   <scientific_name>Xanthoria parietina</scientific_name>
2019                                                   <rank>species</rank>
2020                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
2021                                                 </taxonomy>
2022                                               </clade>
2023                                             </clade>
2024                                           </clade>
2025                                           <clade>
2026                                             <taxonomy>
2027                                               <id provider="uniprot">147541</id>
2028                                               <scientific_name>Dothideomycetes</scientific_name>
2029                                               <rank>class</rank>
2030                                             </taxonomy>
2031                                             <reference doi="10.3114/sim.2009.64.01">
2032                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
2033                                             </reference>
2034                                             <clade>
2035                                               <taxonomy>
2036                                                 <id provider="uniprot">134362</id>
2037                                                 <scientific_name>Capnodiales</scientific_name>
2038                                                 <rank>order</rank>
2039                                               </taxonomy>
2040                                               <clade>
2041                                                 <taxonomy>
2042                                                   <id provider="uniprot">41254</id>
2043                                                   <scientific_name>Mycosphaerella</scientific_name>
2044                                                   <rank>genus</rank>
2045                                                 </taxonomy>
2046                                                 <clade>
2047                                                   <name>MYCFI</name>
2048                                                   <taxonomy>
2049                                                     <id provider="uniprot">83344</id>
2050                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>
2051                                                     <rank>species</rank>
2052                                                   </taxonomy>
2053                                                 </clade>
2054                                                 <clade>
2055                                                   <name>MYCGR</name>
2056                                                   <taxonomy>
2057                                                     <id provider="uniprot">54734</id>
2058                                                     <code>MYCGR</code>
2059                                                     <scientific_name>Mycosphaerella graminicola</scientific_name>
2060                                                     <common_name>Speckled leaf blotch fungus</common_name>
2061                                                     <synonym>Septoria tritici</synonym>
2062                                                     <rank>species</rank>
2063                                                   </taxonomy>
2064                                                 </clade>
2065                                                 <clade>
2066                                                   <name>MYCPJ</name>
2067                                                   <taxonomy>
2068                                                     <id provider="uniprot">64363</id>
2069                                                     <code>MYCPJ</code>
2070                                                     <scientific_name>Mycosphaerella pini</scientific_name>
2071                                                     <common_name>Red band needle blight disease fungus</common_name>
2072                                                     <synonym>Dothistroma septosporum</synonym>
2073                                                     <synonym>Dothistroma pini</synonym>
2074                                                     <rank>species</rank>
2075                                                   </taxonomy>
2076                                                 </clade>
2077                                                 <clade>
2078                                                   <name>MYCPOP</name>
2079                                                   <taxonomy>
2080                                                     <id provider="uniprot">85929</id>
2081                                                     <scientific_name>Mycosphaerella populorum</scientific_name>
2082                                                     <synonym>Septoria musiva</synonym>
2083                                                     <rank>species</rank>
2084                                                   </taxonomy>
2085                                                 </clade>
2086                                               </clade>
2087                                               <clade>
2088                                                 <name>BAUCOM</name>
2089                                                 <taxonomy>
2090                                                   <id provider="uniprot">430998</id>
2091                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
2092                                                   <rank>species</rank>
2093                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
2094                                                 </taxonomy>
2095                                               </clade>
2096                                             </clade>
2097                                             <clade>
2098                                               <taxonomy>
2099                                                 <id provider="uniprot">715340</id>
2100                                                 <scientific_name>Pleosporineae</scientific_name>
2101                                                 <rank>suborder</rank>
2102                                               </taxonomy>
2103                                               <clade>
2104                                                 <taxonomy>
2105                                                   <id provider="uniprot">28556</id>
2106                                                   <scientific_name>Pleosporaceae</scientific_name>
2107                                                   <rank>family</rank>
2108                                                 </taxonomy>
2109                                                 <clade>
2110                                                   <name>Cochliobolus &amp; Setosphaeria</name>
2111                                                   <clade>
2112                                                     <taxonomy>
2113                                                       <id provider="uniprot">5015</id>
2114                                                       <scientific_name>Cochliobolus</scientific_name>
2115                                                       <rank>genus</rank>
2116                                                     </taxonomy>
2117                                                     <clade>
2118                                                       <name>COCHE</name>
2119                                                       <taxonomy>
2120                                                         <id provider="uniprot">5016</id>
2121                                                         <code>COCHE</code>
2122                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>
2123                                                         <synonym>Drechslera maydis</synonym>
2124                                                         <rank>species</rank>
2125                                                       </taxonomy>
2126                                                     </clade>
2127                                                     <clade>
2128                                                       <taxonomy>
2129                                                         <id provider="uniprot">45130</id>
2130                                                         <code>COCSA</code>
2131                                                         <scientific_name>Cochliobolus sativus</scientific_name>
2132                                                         <synonym>Bipolaris sorokiniana</synonym>
2133                                                         <rank>species</rank>
2134                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2135                                                       </taxonomy>
2136                                                     </clade>
2137                                                   </clade>
2138                                                   <clade>
2139                                                     <taxonomy>
2140                                                       <id provider="uniprot">93612</id>
2141                                                       <code>SETTU</code>
2142                                                       <scientific_name>Setosphaeria turcica</scientific_name>
2143                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2144                                                       <common_name>Northern corn leaf blight disease fungus</common_name>
2145                                                       <synonym>Exserohilum turcicum</synonym>
2146                                                       <synonym>Helminthosporium turcicum</synonym>
2147                                                       <rank>species</rank>
2148                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
2149                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
2150                                                     </taxonomy>
2151                                                   </clade>
2152                                                 </clade>
2153                                                 <clade>
2154                                                   <name>PYRTR</name>
2155                                                   <taxonomy>
2156                                                     <id provider="uniprot">426418</id>
2157                                                     <code>PYRTR</code>
2158                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2159                                                     <common_name>Wheat tan spot fungus</common_name>
2160                                                     <synonym>Drechslera tritici-repentis</synonym>
2161                                                   </taxonomy>
2162                                                 </clade>
2163                                               </clade>
2164                                               <clade>
2165                                                 <name>PHANO</name>
2166                                                 <taxonomy>
2167                                                   <id provider="uniprot">13684</id>
2168                                                   <code>PHANO</code>
2169                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>
2170                                                   <common_name>Glume blotch fungus</common_name>
2171                                                   <synonym>Septoria nodorum</synonym>
2172                                                   <rank>species</rank>
2173                                                 </taxonomy>
2174                                               </clade>
2175                                             </clade>
2176                                           </clade>
2177                                         </clade>
2178                                         <clade>
2179                                           <taxonomy>
2180                                             <id provider="uniprot">28568</id>
2181                                             <scientific_name>Trichocomaceae</scientific_name>
2182                                             <rank>family</rank>
2183                                           </taxonomy>
2184                                           <clade>
2185                                             <name>Neosartorya_Emericella</name>
2186                                             <clade>
2187                                               <name>EMENI</name>
2188                                               <taxonomy>
2189                                                 <id provider="eol">195546</id>
2190                                                 <code>EMENI</code>
2191                                                 <scientific_name>Emericella nidulans</scientific_name>
2192                                                 <authority>Vuill. 1927</authority>
2193                                                 <synonym>Aspergillus nidulans</synonym>
2194                                                 <rank>species</rank>
2195                                               </taxonomy>
2196                                             </clade>
2197                                             <clade>
2198                                               <name>NEOFI</name>
2199                                               <taxonomy>
2200                                                 <id provider="uniprot">331117</id>
2201                                                 <code>NEOFI</code>
2202                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2203                                                 <synonym>Aspergillus fischerianus</synonym>
2204                                               </taxonomy>
2205                                             </clade>
2206                                           </clade>
2207                                           <clade>
2208                                             <taxonomy>
2209                                               <id provider="uniprot">5052</id>
2210                                               <scientific_name>Aspergillus</scientific_name>
2211                                               <rank>genus</rank>
2212                                             </taxonomy>
2213                                             <clade>
2214                                               <name>ASPFL</name>
2215                                               <taxonomy>
2216                                                 <id provider="uniprot">5059</id>
2217                                                 <code>ASPFL</code>
2218                                                 <scientific_name>Aspergillus flavus</scientific_name>
2219                                                 <rank>species</rank>
2220                                               </taxonomy>
2221                                             </clade>
2222                                             <clade>
2223                                               <name>ASPNG</name>
2224                                               <taxonomy>
2225                                                 <id provider="uniprot">5061</id>
2226                                                 <code>ASPNG</code>
2227                                                 <scientific_name>Aspergillus niger</scientific_name>
2228                                                 <rank>species</rank>
2229                                               </taxonomy>
2230                                             </clade>
2231                                           </clade>
2232                                         </clade>
2233                                       </clade>
2234                                       <clade>
2235                                         <taxonomy>
2236                                           <id provider="uniprot">33183</id>
2237                                           <scientific_name>Onygenales</scientific_name>
2238                                           <rank>order</rank>
2239                                         </taxonomy>
2240                                         <clade>
2241                                           <name>COCIM</name>
2242                                           <taxonomy>
2243                                             <id provider="uniprot">5501</id>
2244                                             <code>COCIM</code>
2245                                             <scientific_name>Coccidioides immitis</scientific_name>
2246                                             <common_name>Valley fever fungus</common_name>
2247                                             <rank>species</rank>
2248                                           </taxonomy>
2249                                         </clade>
2250                                         <clade>
2251                                           <name>UNCRE</name>
2252                                           <taxonomy>
2253                                             <id provider="uniprot">336963</id>
2254                                             <code>UNCRE</code>
2255                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2256                                           </taxonomy>
2257                                         </clade>
2258                                       </clade>
2259                                     </clade>
2260                                     <clade>
2261                                       <taxonomy>
2262                                         <id provider="uniprot">656061</id>
2263                                         <code>TUBMM</code>
2264                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2265                                         <common_name>Perigord black truffle</common_name>
2266                                         <synonym>Tuber melanosporum Mel28</synonym>
2267                                         <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
2268                                       </taxonomy>
2269                                     </clade>
2270                                   </clade>
2271                                   <clade>
2272                                     <taxonomy>
2273                                       <id provider="uniprot">4892</id>
2274                                       <scientific_name>Saccharomycetales</scientific_name>
2275                                       <common_name>budding yeasts</common_name>
2276                                       <rank>order</rank>
2277                                     </taxonomy>
2278                                     <clade>
2279                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2280                                       <clade>
2281                                         <taxonomy>
2282                                           <id provider="uniprot">4893</id>
2283                                           <scientific_name>Saccharomycetaceae</scientific_name>
2284                                           <rank>family</rank>
2285                                         </taxonomy>
2286                                         <clade>
2287                                           <name>Saccharomyces_Pichia</name>
2288                                           <clade>
2289                                             <name>Saccharomyces</name>
2290                                             <clade>
2291                                               <name>SACCA</name>
2292                                               <taxonomy>
2293                                                 <id provider="uniprot">27288</id>
2294                                                 <code>SACCA</code>
2295                                                 <scientific_name>Saccharomyces castellii</scientific_name>
2296                                                 <common_name>Yeast</common_name>
2297                                                 <synonym>Saccharomyces castellii</synonym>
2298                                                 <rank>species</rank>
2299                                               </taxonomy>
2300                                             </clade>
2301                                             <clade>
2302                                               <name>YEAST</name>
2303                                               <taxonomy>
2304                                                 <id provider="uniprot">4932</id>
2305                                                 <code>YEAST</code>
2306                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>
2307                                                 <common_name>Baker&apos;s yeast</common_name>
2308                                                 <rank>species</rank>
2309                                               </taxonomy>
2310                                             </clade>
2311                                           </clade>
2312                                           <clade>
2313                                             <name>PICAN</name>
2314                                             <taxonomy>
2315                                               <id provider="uniprot">4905</id>
2316                                               <code>PICAN</code>
2317                                               <scientific_name>Pichia angusta</scientific_name>
2318                                               <common_name>Yeast</common_name>
2319                                               <synonym>Hansenula polymorpha</synonym>
2320                                               <rank>species</rank>
2321                                             </taxonomy>
2322                                           </clade>
2323                                         </clade>
2324                                         <clade>
2325                                           <name>Kluyveromyces &amp; Ashbya</name>
2326                                           <clade>
2327                                             <name>Kluyveromyces</name>
2328                                             <clade>
2329                                               <name>KLULA</name>
2330                                               <taxonomy>
2331                                                 <id provider="uniprot">28985</id>
2332                                                 <code>KLULA</code>
2333                                                 <scientific_name>Kluyveromyces lactis</scientific_name>
2334                                                 <common_name>Yeast</common_name>
2335                                                 <synonym>Candida sphaerica</synonym>
2336                                                 <rank>species</rank>
2337                                               </taxonomy>
2338                                             </clade>
2339                                             <clade>
2340                                               <name>KLUWA</name>
2341                                               <taxonomy>
2342                                                 <id provider="uniprot">4914</id>
2343                                                 <code>KLUWA</code>
2344                                                 <scientific_name>Kluyveromyces waltii</scientific_name>
2345                                                 <common_name>Yeast</common_name>
2346                                                 <rank>species</rank>
2347                                               </taxonomy>
2348                                             </clade>
2349                                           </clade>
2350                                           <clade>
2351                                             <name>ASHGO</name>
2352                                             <taxonomy>
2353                                               <id provider="uniprot">33169</id>
2354                                               <code>ASHGO</code>
2355                                               <scientific_name>Ashbya gossypii</scientific_name>
2356                                               <common_name>Yeast</common_name>
2357                                               <synonym>Eremothecium gossypii</synonym>
2358                                               <rank>species</rank>
2359                                             </taxonomy>
2360                                           </clade>
2361                                         </clade>
2362                                       </clade>
2363                                       <clade>
2364                                         <name>Candida &amp; Debaryomyces</name>
2365                                         <clade>
2366                                           <taxonomy>
2367                                             <id provider="uniprot">5475</id>
2368                                             <scientific_name>Candida</scientific_name>
2369                                             <rank>genus</rank>
2370                                           </taxonomy>
2371                                           <clade>
2372                                             <name>CANAL</name>
2373                                             <taxonomy>
2374                                               <id provider="uniprot">5476</id>
2375                                               <code>CANAL</code>
2376                                               <scientific_name>Candida albicans</scientific_name>
2377                                               <common_name>Yeast</common_name>
2378                                               <rank>species</rank>
2379                                             </taxonomy>
2380                                           </clade>
2381                                           <clade>
2382                                             <name>CANTR</name>
2383                                             <taxonomy>
2384                                               <id provider="uniprot">5482</id>
2385                                               <code>CANTR</code>
2386                                               <scientific_name>Candida tropicalis</scientific_name>
2387                                               <common_name>Yeast</common_name>
2388                                               <rank>species</rank>
2389                                             </taxonomy>
2390                                           </clade>
2391                                         </clade>
2392                                         <clade>
2393                                           <name>DEBHA</name>
2394                                           <taxonomy>
2395                                             <id provider="uniprot">4959</id>
2396                                             <code>DEBHA</code>
2397                                             <scientific_name>Debaryomyces hansenii</scientific_name>
2398                                             <common_name>Yeast</common_name>
2399                                             <synonym>Torulaspora hansenii</synonym>
2400                                             <rank>species</rank>
2401                                           </taxonomy>
2402                                         </clade>
2403                                       </clade>
2404                                     </clade>
2405                                     <clade>
2406                                       <name>YARLI</name>
2407                                       <taxonomy>
2408                                         <id provider="uniprot">4952</id>
2409                                         <code>YARLI</code>
2410                                         <scientific_name>Yarrowia lipolytica</scientific_name>
2411                                         <synonym>Candida lipolytica</synonym>
2412                                         <rank>species</rank>
2413                                       </taxonomy>
2414                                     </clade>
2415                                   </clade>
2416                                 </clade>
2417                                 <clade>
2418                                   <taxonomy>
2419                                     <id provider="uniprot">451866</id>
2420                                     <scientific_name>Taphrinomycotina</scientific_name>
2421                                     <rank>subphylum</rank>
2422                                   </taxonomy>
2423                                   <clade>
2424                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2425                                     <clade>
2426                                       <taxonomy>
2427                                         <id provider="uniprot">4895</id>
2428                                         <scientific_name>Schizosaccharomyces</scientific_name>
2429                                         <rank>genus</rank>
2430                                       </taxonomy>
2431                                       <clade>
2432                                         <name>SCHJP</name>
2433                                         <taxonomy>
2434                                           <id provider="uniprot">4897</id>
2435                                           <code>SCHJP</code>
2436                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2437                                           <common_name>Fission yeast</common_name>
2438                                           <rank>species</rank>
2439                                         </taxonomy>
2440                                       </clade>
2441                                       <clade>
2442                                         <taxonomy>
2443                                           <id provider="uniprot">4899</id>
2444                                           <code>SCHOT</code>
2445                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2446                                           <common_name>Fission yeast</common_name>
2447                                           <rank>species</rank>
2448                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2449                                         </taxonomy>
2450                                       </clade>
2451                                       <clade>
2452                                         <name>SCHPO</name>
2453                                         <taxonomy>
2454                                           <id provider="uniprot">4896</id>
2455                                           <code>SCHPO</code>
2456                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>
2457                                           <common_name>Fission yeast</common_name>
2458                                           <rank>species</rank>
2459                                         </taxonomy>
2460                                       </clade>
2461                                     </clade>
2462                                     <clade>
2463                                       <name>PNECA</name>
2464                                       <taxonomy>
2465                                         <id provider="uniprot">4754</id>
2466                                         <code>PNECA</code>
2467                                         <scientific_name>Pneumocystis carinii</scientific_name>
2468                                         <rank>species</rank>
2469                                       </taxonomy>
2470                                     </clade>
2471                                   </clade>
2472                                   <clade>
2473                                     <name>SAICOM</name>
2474                                     <taxonomy>
2475                                       <id provider="uniprot">5606</id>
2476                                       <scientific_name>Saitoella complicata</scientific_name>
2477                                       <rank>species</rank>
2478                                     </taxonomy>
2479                                   </clade>
2480                                 </clade>
2481                               </clade>
2482                               <clade>
2483                                 <taxonomy>
2484                                   <id provider="uniprot">5204</id>
2485                                   <scientific_name>Basidiomycota</scientific_name>
2486                                   <rank>phylum</rank>
2487                                 </taxonomy>
2488                                 <clade>
2489                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2490                                   <clade>
2491                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2492                                     <clade>
2493                                       <taxonomy>
2494                                         <id provider="uniprot">5302</id>
2495                                         <scientific_name>Agaricomycotina</scientific_name>
2496                                       </taxonomy>
2497                                       <clade>
2498                                         <taxonomy>
2499                                           <id provider="uniprot">155619</id>
2500                                           <scientific_name>Homobasidiomycetes</scientific_name>
2501                                           <rank>class</rank>
2502                                         </taxonomy>
2503                                         <reference doi="10.1098/rspb.2002.2123">
2504                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2505                                         </reference>
2506                                         <clade>
2507                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2508                                           <clade>
2509                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>
2510                                             <clade>
2511                                               <taxonomy>
2512                                                 <id provider="uniprot">452333</id>
2513                                                 <scientific_name>Agaricomycetidae</scientific_name>
2514                                                 <rank>subclass</rank>
2515                                               </taxonomy>
2516                                               <clade>
2517                                                 <name>Agaricales &amp; Boletales</name>
2518                                                 <clade>
2519                                                   <taxonomy>
2520                                                     <id provider="uniprot">5338</id>
2521                                                     <scientific_name>Agaricales</scientific_name>
2522                                                     <rank>order</rank>
2523                                                   </taxonomy>
2524                                                   <clade>
2525                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2526                                                     <clade>
2527                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2528                                                       <clade>
2529                                                         <name>Agaricus &amp; Coprinopsis</name>
2530                                                         <clade>
2531                                                           <name>AGABB</name>
2532                                                           <taxonomy>
2533                                                             <id provider="uniprot">192524</id>
2534                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2535                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2536                                                           </taxonomy>
2537                                                         </clade>
2538                                                         <clade>
2539                                                           <name>COPCI</name>
2540                                                           <taxonomy>
2541                                                             <id provider="uniprot">5346</id>
2542                                                             <code>COPCI</code>
2543                                                             <scientific_name>Coprinopsis cinerea</scientific_name>
2544                                                             <common_name>Inky cap fungus</common_name>
2545                                                             <synonym>Hormographiella aspergillata</synonym>
2546                                                             <rank>species</rank>
2547                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2548                                                           </taxonomy>
2549                                                         </clade>
2550                                                       </clade>
2551                                                       <clade>
2552                                                         <taxonomy>
2553                                                           <id provider="uniprot">29883</id>
2554                                                           <code>LACBI</code>
2555                                                           <scientific_name>Laccaria bicolor</scientific_name>
2556                                                           <common_name>Bicoloured deceiver</common_name>
2557                                                           <synonym>Laccaria laccata var. bicolor</synonym>
2558                                                           <rank>species</rank>
2559                                                           <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>
2560                                                         </taxonomy>
2561                                                       </clade>
2562                                                     </clade>
2563                                                     <clade>
2564                                                       <name>GYMLUX</name>
2565                                                       <taxonomy>
2566                                                         <id provider="uniprot">206324</id>
2567                                                         <scientific_name>Gymnopus luxurians</scientific_name>
2568                                                         <rank>species</rank>
2569                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2570                                                       </taxonomy>
2571                                                     </clade>
2572                                                   </clade>
2573                                                   <clade>
2574                                                     <name>PLEOS</name>
2575                                                     <taxonomy>
2576                                                       <id provider="uniprot">5322</id>
2577                                                       <code>PLEOS</code>
2578                                                       <scientific_name>Pleurotus ostreatus</scientific_name>
2579                                                       <common_name>Oyster mushroom</common_name>
2580                                                       <synonym>White-rot fungus</synonym>
2581                                                       <rank>species</rank>
2582                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2583                                                     </taxonomy>
2584                                                   </clade>
2585                                                 </clade>
2586                                                 <clade>
2587                                                   <taxonomy>
2588                                                     <id provider="uniprot">68889</id>
2589                                                     <scientific_name>Boletales</scientific_name>
2590                                                     <synonym>Melanogastrales</synonym>
2591                                                     <synonym>Sclerodermatales</synonym>
2592                                                     <rank>order</rank>
2593                                                   </taxonomy>
2594                                                   <clade>
2595                                                     <taxonomy>
2596                                                       <id provider="uniprot">227334</id>
2597                                                       <scientific_name>Coniophorineae</scientific_name>
2598                                                       <rank>suborder</rank>
2599                                                     </taxonomy>
2600                                                     <clade>
2601                                                       <name>CONPUT</name>
2602                                                       <taxonomy>
2603                                                         <id provider="uniprot">80637</id>
2604                                                         <scientific_name>Coniophora puteana</scientific_name>
2605                                                         <authority>Schum. ex Fries</authority>
2606                                                         <common_name>cellar fungus</common_name>
2607                                                         <rank>species</rank>
2608                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2609                                                       </taxonomy>
2610                                                     </clade>
2611                                                     <clade>
2612                                                       <name>SERLAC</name>
2613                                                       <taxonomy>
2614                                                         <id provider="uniprot">85982</id>
2615                                                         <scientific_name>Serpula lacrymans</scientific_name>
2616                                                         <common_name>dry rot fungus</common_name>
2617                                                         <rank>species</rank>
2618                                                         <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
2619                                                       </taxonomy>
2620                                                     </clade>
2621                                                   </clade>
2622                                                   <clade>
2623                                                     <name>HYDPIN</name>
2624                                                     <taxonomy>
2625                                                       <id provider="uniprot">388859</id>
2626                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>
2627                                                       <common_name>Spiny dry rot fungus</common_name>
2628                                                       <rank>species</rank>
2629                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2630                                                     </taxonomy>
2631                                                   </clade>
2632                                                 </clade>
2633                                               </clade>
2634                                               <clade>
2635                                                 <name>JAAARG</name>
2636                                                 <taxonomy>
2637                                                   <id provider="uniprot">202697</id>
2638                                                   <scientific_name>Jaapia argillacea</scientific_name>
2639                                                   <rank>species</rank>
2640                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>
2641                                                 </taxonomy>
2642                                               </clade>
2643                                             </clade>
2644                                             <clade>
2645                                               <name>GLOTR</name>
2646                                               <taxonomy>
2647                                                 <id provider="uniprot">104355</id>
2648                                                 <code>GLOTR</code>
2649                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>
2650                                                 <common_name>Brown rot fungus</common_name>
2651                                                 <rank>species</rank>
2652                                                 <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>
2653                                               </taxonomy>
2654                                             </clade>
2655                                           </clade>
2656                                           <clade>
2657                                             <taxonomy>
2658                                               <id provider="uniprot">5303</id>
2659                                               <scientific_name>Aphyllophorales</scientific_name>
2660                                               <authority>Gäum. (1926)</authority>
2661                                               <common_name>Shelf Fungi</common_name>
2662                                               <synonym>Polyporales</synonym>
2663                                               <rank>order</rank>
2664                                             </taxonomy>
2665                                             <clade>
2666                                               <taxonomy>
2667                                                 <id provider="uniprot">83233</id>
2668                                                 <scientific_name>Coriolaceae</scientific_name>
2669                                                 <rank>family</rank>
2670                                               </taxonomy>
2671                                               <reference doi="10.1017/S1477200005001623">
2672                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2673                                               </reference>
2674                                               <reference>
2675                                               </reference>
2676                                               <reference>
2677                                               </reference>
2678                                               <clade>
2679                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2680                                                 <clade>
2681                                                   <name>Antrodia clade</name>
2682                                                   <taxonomy>
2683                                                     <common_name>Antrodia clade</common_name>
2684                                                   </taxonomy>
2685                                                   <clade>
2686                                                     <name>FOMPIN</name>
2687                                                     <taxonomy>
2688                                                       <id provider="uniprot">40483</id>
2689                                                       <scientific_name>Fomitopsis pinicola</scientific_name>
2690                                                       <authority>P. Karst. 1881</authority>
2691                                                       <common_name>Red banded polypore</common_name>
2692                                                       <synonym>Fomes pinicola</synonym>
2693                                                       <rank>species</rank>
2694                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2695                                                     </taxonomy>
2696                                                   </clade>
2697                                                   <clade>
2698                                                     <name>POSPL</name>
2699                                                     <taxonomy>
2700                                                       <id provider="uniprot">104341</id>
2701                                                       <scientific_name>Postia placenta</scientific_name>
2702                                                       <rank>species</rank>
2703                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2704                                                     </taxonomy>
2705                                                   </clade>
2706                                                 </clade>
2707                                                 <clade>
2708                                                   <name>core polyporoid clade</name>
2709                                                   <taxonomy>
2710                                                     <common_name>core polyporoid clade</common_name>
2711                                                   </taxonomy>
2712                                                   <clade>
2713                                                     <name>TRAVE</name>
2714                                                     <taxonomy>
2715                                                       <id provider="uniprot">5325</id>
2716                                                       <code>TRAVE</code>
2717                                                       <scientific_name>Trametes versicolor</scientific_name>
2718                                                       <authority>(L.) Lloyd 1921</authority>
2719                                                       <common_name>White-rot fungus</common_name>
2720                                                       <synonym>Coriolus versicolor</synonym>
2721                                                       <synonym>Bjerkandera versicolor</synonym>
2722                                                       <rank>species</rank>
2723                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2724                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2725                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2726                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2727                                                     </taxonomy>
2728                                                   </clade>
2729                                                   <clade>
2730                                                     <name>WOLCOC</name>
2731                                                     <taxonomy>
2732                                                       <id provider="uniprot">81056</id>
2733                                                       <scientific_name>Wolfiporia cocos</scientific_name>
2734                                                       <rank>species</rank>
2735                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2736                                                     </taxonomy>
2737                                                   </clade>
2738                                                 </clade>
2739                                               </clade>
2740                                               <clade>
2741                                                 <name>CERSU</name>
2742                                                 <taxonomy>
2743                                                   <id provider="uniprot">42742</id>
2744                                                   <code>CERSU</code>
2745                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2746                                                   <rank>species</rank>
2747                                                 </taxonomy>
2748                                               </clade>
2749                                             </clade>
2750                                             <clade>
2751                                               <name>DICSQU</name>
2752                                               <taxonomy>
2753                                                 <id provider="uniprot">114155</id>
2754                                                 <scientific_name>Dichomitus squalens</scientific_name>
2755                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>
2756                                                 <common_name>Red rot</common_name>
2757                                                 <synonym>Polyporus anceps</synonym>
2758                                                 <rank>species</rank>
2759                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2760                                               </taxonomy>
2761                                             </clade>
2762                                           </clade>
2763                                         </clade>
2764                                         <clade>
2765                                           <name>HETAN</name>
2766                                           <taxonomy>
2767                                             <id provider="uniprot">13563</id>
2768                                             <code>HETAN</code>
2769                                             <scientific_name>Heterobasidion annosum</scientific_name>
2770                                             <common_name>Root rot fungus</common_name>
2771                                             <rank>species</rank>
2772                                           </taxonomy>
2773                                         </clade>
2774                                       </clade>
2775                                       <clade>
2776                                         <taxonomy>
2777                                           <id provider="uniprot">5215</id>
2778                                           <scientific_name>Tremellaceae</scientific_name>
2779                                           <rank>family</rank>
2780                                         </taxonomy>
2781                                         <clade>
2782                                           <name>CRYNE</name>
2783                                           <taxonomy>
2784                                             <id provider="uniprot">5207</id>
2785                                             <code>CRYNE</code>
2786                                             <scientific_name>Cryptococcus neoformans</scientific_name>
2787                                             <synonym>Filobasidiella neoformans</synonym>
2788                                             <rank>species</rank>
2789                                           </taxonomy>
2790                                         </clade>
2791                                         <clade>
2792                                           <name>TREME</name>
2793                                           <taxonomy>
2794                                             <id provider="eol">1029985</id>
2795                                             <code>TREME</code>
2796                                             <scientific_name>Tremella mesenterica</scientific_name>
2797                                             <authority>Pers. 1800</authority>
2798                                             <common_name>Jelly fungus</common_name>
2799                                             <synonym>Yellow Brain</synonym>
2800                                             <synonym>Tremella lutescens</synonym>
2801                                             <rank>species</rank>
2802                                           </taxonomy>
2803                                         </clade>
2804                                       </clade>
2805                                     </clade>
2806                                     <clade>
2807                                       <taxonomy>
2808                                         <id provider="uniprot">452284</id>
2809                                         <scientific_name>Ustilaginomycotina</scientific_name>
2810                                         <rank>subphylum</rank>
2811                                       </taxonomy>
2812                                       <clade>
2813                                         <taxonomy>
2814                                           <id provider="uniprot">425265</id>
2815                                           <code>MALGO</code>
2816                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2817                                           <common_name>Dandruff-associated fungus</common_name>
2818                                         </taxonomy>
2819                                       </clade>
2820                                       <clade>
2821                                         <name>USTMA</name>
2822                                         <taxonomy>
2823                                           <id provider="uniprot">5270</id>
2824                                           <code>USTMA</code>
2825                                           <scientific_name>Ustilago maydis</scientific_name>
2826                                           <common_name>Smut fungus</common_name>
2827                                           <rank>species</rank>
2828                                         </taxonomy>
2829                                       </clade>
2830                                     </clade>
2831                                   </clade>
2832                                   <clade>
2833                                     <taxonomy>
2834                                       <id provider="uniprot">29000</id>
2835                                       <scientific_name>Pucciniomycotina</scientific_name>
2836                                       <rank>subphylum</rank>
2837                                     </taxonomy>
2838                                     <clade>
2839                                       <taxonomy>
2840                                         <id provider="uniprot">5258</id>
2841                                         <scientific_name>Pucciniales</scientific_name>
2842                                         <common_name>rusts</common_name>
2843                                         <rank>order</rank>
2844                                       </taxonomy>
2845                                       <clade>
2846                                         <name>MELLP</name>
2847                                         <taxonomy>
2848                                           <id provider="eol">156696</id>
2849                                           <code>MELLP</code>
2850                                           <scientific_name>Melampsora laricis-populina</scientific_name>
2851                                           <authority>Kleb. 1902</authority>
2852                                           <synonym>Melampsora larici-populina</synonym>
2853                                           <synonym>Melampsora laricipopulina</synonym>
2854                                           <rank>species</rank>
2855                                         </taxonomy>
2856                                       </clade>
2857                                       <clade>
2858                                         <name>PUCGR</name>
2859                                         <taxonomy>
2860                                           <id provider="eol">1029947</id>
2861                                           <code>PUCGR</code>
2862                                           <scientific_name>Puccinia graminis</scientific_name>
2863                                           <authority>Pers. 1794</authority>
2864                                           <common_name>Black stem rust fungus</common_name>
2865                                           <synonym>Wheat rust</synonym>
2866                                           <rank>species</rank>
2867                                         </taxonomy>
2868                                       </clade>
2869                                     </clade>
2870                                     <clade>
2871                                       <taxonomy>
2872                                         <id provider="uniprot">89013</id>
2873                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
2874                                       </taxonomy>
2875                                       <clade>
2876                                         <name>RHOGR</name>
2877                                         <taxonomy>
2878                                           <id provider="uniprot">29898</id>
2879                                           <code>RHOGR</code>
2880                                           <scientific_name>Rhodotorula graminis</scientific_name>
2881                                           <common_name>Yeast</common_name>
2882                                           <rank>species</rank>
2883                                         </taxonomy>
2884                                       </clade>
2885                                       <clade>
2886                                         <name>SPORO</name>
2887                                         <taxonomy>
2888                                           <id provider="eol">1013696</id>
2889                                           <scientific_name>Sporobolomyces roseus</scientific_name>
2890                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>
2891                                           <rank>species</rank>
2892                                         </taxonomy>
2893                                       </clade>
2894                                     </clade>
2895                                   </clade>
2896                                 </clade>
2897                                 <clade>
2898                                   <name>WALSE</name>
2899                                   <taxonomy>
2900                                     <id provider="uniprot">148960</id>
2901                                     <code>WALSE</code>
2902                                     <scientific_name>Wallemia sebi</scientific_name>
2903                                     <rank>species</rank>
2904                                   </taxonomy>
2905                                 </clade>
2906                               </clade>
2907                             </clade>
2908                             <clade>
2909                               <taxonomy>
2910                                 <id provider="uniprot">451507</id>
2911                                 <scientific_name>Mucoromycotina</scientific_name>
2912                                 <rank>subphylum</rank>
2913                               </taxonomy>
2914                               <clade>
2915                                 <taxonomy>
2916                                   <id provider="uniprot">34489</id>
2917                                   <scientific_name>Mucoraceae</scientific_name>
2918                                   <rank>family</rank>
2919                                 </taxonomy>
2920                                 <clade>
2921                                   <name>MUCCI</name>
2922                                   <taxonomy>
2923                                     <id provider="uniprot">36080</id>
2924                                     <code>MUCCI</code>
2925                                     <scientific_name>Mucor circinelloides</scientific_name>
2926                                     <synonym>Mucor griseo-roseus</synonym>
2927                                     <rank>species</rank>
2928                                   </taxonomy>
2929                                 </clade>
2930                                 <clade>
2931                                   <name>PHYBL</name>
2932                                   <taxonomy>
2933                                     <id provider="uniprot">4837</id>
2934                                     <code>PHYBL</code>
2935                                     <scientific_name>Phycomyces blakesleeanus</scientific_name>
2936                                     <rank>species</rank>
2937                                   </taxonomy>
2938                                 </clade>
2939                                 <clade>
2940                                   <name>RHIOR</name>
2941                                   <taxonomy>
2942                                     <id provider="uniprot">64495</id>
2943                                     <code>RHIOR</code>
2944                                     <scientific_name>Rhizopus oryzae</scientific_name>
2945                                     <synonym>Rhizopus delemar</synonym>
2946                                     <rank>species</rank>
2947                                   </taxonomy>
2948                                 </clade>
2949                               </clade>
2950                               <clade>
2951                                 <name>MORVER</name>
2952                                 <taxonomy>
2953                                   <id provider="uniprot">78898</id>
2954                                   <scientific_name>Mortierella verticillata</scientific_name>
2955                                   <rank>species</rank>
2956                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
2957                                 </taxonomy>
2958                               </clade>
2959                             </clade>
2960                           </clade>
2961                           <clade>
2962                             <name>COEREV</name>
2963                             <taxonomy>
2964                               <id provider="uniprot">61392</id>
2965                               <scientific_name>Coemansia reversa</scientific_name>
2966                               <rank>species</rank>
2967                             </taxonomy>
2968                           </clade>
2969                         </clade>
2970                         <clade>
2971                           <taxonomy>
2972                             <id provider="uniprot">28583</id>
2973                             <code>ALLMA</code>
2974                             <scientific_name>Allomyces macrogynus</scientific_name>
2975                             <rank>species</rank>
2976                           </taxonomy>
2977                         </clade>
2978                       </clade>
2979                       <clade>
2980                         <taxonomy>
2981                           <id provider="uniprot">4761</id>
2982                           <scientific_name>Chytridiomycota</scientific_name>
2983                           <common_name>chytrids</common_name>
2984                           <synonym>Mastigomycotina</synonym>
2985                           <rank>phylum</rank>
2986                         </taxonomy>
2987                         <clade>
2988                           <taxonomy>
2989                             <id provider="uniprot">451435</id>
2990                             <scientific_name>Chytridiomycetes</scientific_name>
2991                             <rank>class</rank>
2992                           </taxonomy>
2993                           <clade>
2994                             <taxonomy>
2995                               <id provider="uniprot">109871</id>
2996                               <code>BATDE</code>
2997                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
2998                               <common_name>Frog chytrid fungus</common_name>
2999                               <rank>species</rank>
3000                             </taxonomy>
3001                           </clade>
3002                           <clade>
3003                             <taxonomy>
3004                               <id provider="uniprot">109760</id>
3005                               <code>SPIPN</code>
3006                               <scientific_name>Spizellomyces punctatus</scientific_name>
3007                               <rank>species</rank>
3008                             </taxonomy>
3009                           </clade>
3010                         </clade>
3011                         <clade>
3012                           <name>GONPRO</name>
3013                           <taxonomy>
3014                             <id provider="eol">157984</id>
3015                             <scientific_name>Gonapodya prolifera</scientific_name>
3016                             <authority>A. Fisch. 1892</authority>
3017                             <rank>species</rank>
3018                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
3019                           </taxonomy>
3020                         </clade>
3021                       </clade>
3022                     </clade>
3023                     <clade>
3024                       <name>PIRSPE</name>
3025                       <taxonomy>
3026                         <id provider="uniprot">73868</id>
3027                         <scientific_name>Piromyces sp. E2</scientific_name>
3028                         <rank>species</rank>
3029                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
3030                       </taxonomy>
3031                     </clade>
3032                   </clade>
3033                   <clade>
3034                     <name>ENCCU</name>
3035                     <taxonomy>
3036                       <id provider="uniprot">6035</id>
3037                       <code>ENCCU</code>
3038                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
3039                       <common_name>Microsporidian parasite</common_name>
3040                       <rank>species</rank>
3041                     </taxonomy>
3042                   </clade>
3043                 </clade>
3044                 <clade>
3045                   <name>Fonticula &amp; Nucleariidae</name>
3046                   <reference doi="10.1093/molbev/msp185">
3047                   </reference>
3048                   <clade>
3049                     <name>FONALB</name>
3050                     <taxonomy>
3051                       <id provider="uniprot">691883</id>
3052                       <scientific_name>Fonticula alba</scientific_name>
3053                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
3054                       <rank>species</rank>
3055                     </taxonomy>
3056                   </clade>
3057                   <clade>
3058                     <name>NUCSIM</name>
3059                     <taxonomy>
3060                       <id provider="uniprot">154970</id>
3061                       <scientific_name>Nuclearia simplex</scientific_name>
3062                       <rank>species</rank>
3063                     </taxonomy>
3064                   </clade>
3065                 </clade>
3066               </clade>
3067             </clade>
3068             <clade>
3069               <name>THETRA</name>
3070               <taxonomy>
3071                 <id provider="uniprot">529818</id>
3072                 <scientific_name>Thecamonas trahens</scientific_name>
3073                 <rank>species</rank>
3074               </taxonomy>
3075             </clade>
3076           </clade>
3077           <clade>
3078             <name>Amoebozoa</name>
3079             <taxonomy>
3080               <id provider="uniprot">554915</id>
3081               <scientific_name>Amoebozoa</scientific_name>
3082             </taxonomy>
3083             <clade>
3084               <name>Dictyostelium</name>
3085               <taxonomy>
3086                 <id provider="uniprot">5782</id>
3087                 <scientific_name>Dictyostelium</scientific_name>
3088                 <rank>genus</rank>
3089               </taxonomy>
3090               <clade>
3091                 <name>DICDI</name>
3092                 <taxonomy>
3093                   <id provider="uniprot">44689</id>
3094                   <code>DICDI</code>
3095                   <scientific_name>Dictyostelium discoideum</scientific_name>
3096                   <common_name>Slime mold</common_name>
3097                   <rank>species</rank>
3098                 </taxonomy>
3099               </clade>
3100               <clade>
3101                 <name>DICPU</name>
3102                 <taxonomy>
3103                   <id provider="uniprot">5786</id>
3104                   <code>DICPU</code>
3105                   <scientific_name>Dictyostelium purpureum</scientific_name>
3106                   <common_name>Slime mold</common_name>
3107                   <rank>species</rank>
3108                 </taxonomy>
3109               </clade>
3110             </clade>
3111             <clade>
3112               <name>ENTHI</name>
3113               <taxonomy>
3114                 <id provider="uniprot">5759</id>
3115                 <code>ENTHI</code>
3116                 <scientific_name>Entamoeba histolytica</scientific_name>
3117                 <rank>species</rank>
3118               </taxonomy>
3119             </clade>
3120           </clade>
3121         </clade>
3122         <clade>
3123           <name>Bikonta</name>
3124           <reference doi="10.1099/ijs.0.63216-0">
3125           </reference>
3126           <clade>
3127             <name>Corticata</name>
3128             <clade>
3129               <name>Archaeplastida</name>
3130               <clade>
3131                 <taxonomy>
3132                   <id provider="uniprot">33090</id>
3133                   <scientific_name>Viridiplantae</scientific_name>
3134                   <common_name>green plants</common_name>
3135                   <rank>kingdom</rank>
3136                 </taxonomy>
3137                 <clade>
3138                   <taxonomy>
3139                     <id provider="uniprot">3193</id>
3140                     <scientific_name>Embryophyta</scientific_name>
3141                   </taxonomy>
3142                   <clade>
3143                     <taxonomy>
3144                       <id provider="uniprot">58023</id>
3145                       <scientific_name>Tracheophyta</scientific_name>
3146                     </taxonomy>
3147                     <clade>
3148                       <taxonomy>
3149                         <id provider="uniprot">3398</id>
3150                         <scientific_name>Magnoliophyta</scientific_name>
3151                         <common_name>flowering plants</common_name>
3152                         <synonym>Angiospermae</synonym>
3153                       </taxonomy>
3154                       <clade>
3155                         <taxonomy>
3156                           <id provider="uniprot">71240</id>
3157                           <scientific_name>eudicotyledons</scientific_name>
3158                         </taxonomy>
3159                         <clade>
3160                           <taxonomy>
3161                             <id provider="uniprot">91827</id>
3162                             <scientific_name>core eudicotyledons</scientific_name>
3163                           </taxonomy>
3164                           <clade>
3165                             <taxonomy>
3166                               <id provider="uniprot">71275</id>
3167                               <scientific_name>rosids</scientific_name>
3168                               <rank>subclass</rank>
3169                             </taxonomy>
3170                             <clade>
3171                               <name>fabids &amp; malvids</name>
3172                               <clade>
3173                                 <taxonomy>
3174                                   <id provider="uniprot">91835</id>
3175                                   <scientific_name>fabids</scientific_name>
3176                                 </taxonomy>
3177                                 <clade>
3178                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3179                                   <clade>
3180                                     <name>Rosales &amp; Cucurbitales</name>
3181                                     <clade>
3182                                       <taxonomy>
3183                                         <id provider="uniprot">3745</id>
3184                                         <scientific_name>Rosaceae</scientific_name>
3185                                         <rank>family</rank>
3186                                       </taxonomy>
3187                                       <clade>
3188                                         <name>FRAVE</name>
3189                                         <taxonomy>
3190                                           <id provider="uniprot">57918</id>
3191                                           <code>FRAVE</code>
3192                                           <scientific_name>Fragaria vesca</scientific_name>
3193                                           <common_name>Woodland strawberry</common_name>
3194                                           <synonym>Fragaria vesca L.</synonym>
3195                                           <synonym>European strawberry</synonym>
3196                                           <synonym>alpine strawberry</synonym>
3197                                           <rank>species</rank>
3198                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3199                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3200                                         </taxonomy>
3201                                       </clade>
3202                                       <clade>
3203                                         <name>PRUPE</name>
3204                                         <taxonomy>
3205                                           <id provider="uniprot">3760</id>
3206                                           <code>PRUPE</code>
3207                                           <scientific_name>Prunus persica</scientific_name>
3208                                           <common_name>Peach</common_name>
3209                                           <synonym>Persica vulgaris</synonym>
3210                                           <synonym>Amygdalus persica</synonym>
3211                                           <rank>species</rank>
3212                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3213                                         </taxonomy>
3214                                       </clade>
3215                                     </clade>
3216                                     <clade>
3217                                       <name>CUCSA</name>
3218                                       <taxonomy>
3219                                         <id provider="uniprot">3659</id>
3220                                         <code>CUCSA</code>
3221                                         <scientific_name>Cucumis sativus</scientific_name>
3222                                         <common_name>Cucumber</common_name>
3223                                         <rank>species</rank>
3224                                       </taxonomy>
3225                                     </clade>
3226                                   </clade>
3227                                   <clade>
3228                                     <taxonomy>
3229                                       <id provider="uniprot">3814</id>
3230                                       <scientific_name>Papilionoideae</scientific_name>
3231                                       <rank>subfamily</rank>
3232                                     </taxonomy>
3233                                     <clade>
3234                                       <name>SOYBN</name>
3235                                       <taxonomy>
3236                                         <id provider="uniprot">3847</id>
3237                                         <code>SOYBN</code>
3238                                         <scientific_name>Glycine max</scientific_name>
3239                                         <authority>cv. Wye</authority>
3240                                         <common_name>Soybean</common_name>
3241                                         <synonym>Glycine hispida</synonym>
3242                                         <rank>species</rank>
3243                                       </taxonomy>
3244                                     </clade>
3245                                     <clade>
3246                                       <name>MEDTR</name>
3247                                       <taxonomy>
3248                                         <id provider="uniprot">3880</id>
3249                                         <code>MEDTR</code>
3250                                         <scientific_name>Medicago truncatula</scientific_name>
3251                                         <common_name>Barrel medic</common_name>
3252                                         <synonym>Medicago tribuloides</synonym>
3253                                         <rank>species</rank>
3254                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3255                                       </taxonomy>
3256                                     </clade>
3257                                   </clade>
3258                                 </clade>
3259                                 <clade>
3260                                   <taxonomy>
3261                                     <id provider="uniprot">3646</id>
3262                                     <scientific_name>Malpighiales</scientific_name>
3263                                     <rank>order</rank>
3264                                   </taxonomy>
3265                                   <clade>
3266                                     <taxonomy>
3267                                       <id provider="uniprot">3977</id>
3268                                       <scientific_name>Euphorbiaceae</scientific_name>
3269                                       <rank>family</rank>
3270                                     </taxonomy>
3271                                     <clade>
3272                                       <name>MANES</name>
3273                                       <taxonomy>
3274                                         <id provider="uniprot">3983</id>
3275                                         <code>MANES</code>
3276                                         <scientific_name>Manihot esculenta</scientific_name>
3277                                         <common_name>Tapioca</common_name>
3278                                         <synonym>Jatropha manihot</synonym>
3279                                         <rank>species</rank>
3280                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3281                                       </taxonomy>
3282                                     </clade>
3283                                     <clade>
3284                                       <name>RICCO</name>
3285                                       <taxonomy>
3286                                         <id provider="uniprot">3988</id>
3287                                         <code>RICCO</code>
3288                                         <scientific_name>Ricinus communis</scientific_name>
3289                                         <common_name>Castor bean</common_name>
3290                                         <synonym>Ricinus sanguineus</synonym>
3291                                         <rank>species</rank>
3292                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3293                                       </taxonomy>
3294                                     </clade>
3295                                   </clade>
3296                                   <clade>
3297                                     <name>POPTR</name>
3298                                     <taxonomy>
3299                                       <id provider="uniprot">3694</id>
3300                                       <code>POPTR</code>
3301                                       <scientific_name>Populus trichocarpa</scientific_name>
3302                                       <common_name>Western balsam poplar</common_name>
3303                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3304                                       <rank>species</rank>
3305                                     </taxonomy>
3306                                   </clade>
3307                                 </clade>
3308                               </clade>
3309                               <clade>
3310                                 <taxonomy>
3311                                   <id provider="uniprot">91836</id>
3312                                   <scientific_name>malvids</scientific_name>
3313                                 </taxonomy>
3314                                 <clade>
3315                                   <name>Brassicales &amp; Sapindales</name>
3316                                   <clade>
3317                                     <taxonomy>
3318                                       <id provider="uniprot">3699</id>
3319                                       <scientific_name>Brassicales</scientific_name>
3320                                       <rank>order</rank>
3321                                     </taxonomy>
3322                                     <clade>
3323                                       <taxonomy>
3324                                         <id provider="uniprot">3700</id>
3325                                         <scientific_name>Brassicaceae</scientific_name>
3326                                         <rank>family</rank>
3327                                       </taxonomy>
3328                                       <clade>
3329                                         <taxonomy>
3330                                           <id provider="uniprot">3701</id>
3331                                           <scientific_name>Arabidopsis</scientific_name>
3332                                           <rank>genus</rank>
3333                                         </taxonomy>
3334                                         <clade>
3335                                           <name>ARALY</name>
3336                                           <taxonomy>
3337                                             <id provider="uniprot">59689</id>
3338                                             <code>ARALY</code>
3339                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3340                                             <common_name>Lyre-leaved rock-cress</common_name>
3341                                             <rank>species</rank>
3342                                           </taxonomy>
3343                                         </clade>
3344                                         <clade>
3345                                           <name>ARATH</name>
3346                                           <taxonomy>
3347                                             <id provider="uniprot">3702</id>
3348                                             <code>ARATH</code>
3349                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3350                                             <common_name>Mouse-ear cress</common_name>
3351                                             <rank>species</rank>
3352                                           </taxonomy>
3353                                         </clade>
3354                                       </clade>
3355                                       <clade>
3356                                         <taxonomy>
3357                                           <id provider="uniprot">98038</id>
3358                                           <code>THEHA</code>
3359                                           <scientific_name>Thellungiella halophila</scientific_name>
3360                                           <common_name>Salt cress</common_name>
3361                                           <rank>species</rank>
3362                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3363                                         </taxonomy>
3364                                       </clade>
3365                                     </clade>
3366                                     <clade>
3367                                       <name>CARPA</name>
3368                                       <taxonomy>
3369                                         <id provider="uniprot">3649</id>
3370                                         <code>CARPA</code>
3371                                         <scientific_name>Carica papaya</scientific_name>
3372                                         <common_name>Papaya</common_name>
3373                                         <rank>species</rank>
3374                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3375                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3376                                       </taxonomy>
3377                                     </clade>
3378                                   </clade>
3379                                   <clade>
3380                                     <taxonomy>
3381                                       <id provider="uniprot">2706</id>
3382                                       <scientific_name>Citrus</scientific_name>
3383                                       <rank>genus</rank>
3384                                     </taxonomy>
3385                                     <clade>
3386                                       <name>CITCLE</name>
3387                                       <taxonomy>
3388                                         <id provider="uniprot">85681</id>
3389                                         <scientific_name>Citrus clementina</scientific_name>
3390                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3391                                         <rank>species</rank>
3392                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3393                                       </taxonomy>
3394                                     </clade>
3395                                     <clade>
3396                                       <name>CITSI</name>
3397                                       <taxonomy>
3398                                         <id provider="uniprot">2711</id>
3399                                         <code>CITSI</code>
3400                                         <scientific_name>Citrus sinensis</scientific_name>
3401                                         <common_name>Sweet orange</common_name>
3402                                         <synonym>Citrus x sinensis</synonym>
3403                                         <synonym>Citrus aurantium var. sinensis</synonym>
3404                                         <rank>species</rank>
3405                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3406                                       </taxonomy>
3407                                     </clade>
3408                                   </clade>
3409                                 </clade>
3410                                 <clade>
3411                                   <name>EUCGR</name>
3412                                   <taxonomy>
3413                                     <id provider="uniprot">71139</id>
3414                                     <code>EUCGR</code>
3415                                     <scientific_name>Eucalyptus grandis</scientific_name>
3416                                     <common_name>Flooded gum</common_name>
3417                                     <rank>species</rank>
3418                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3419                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3420                                   </taxonomy>
3421                                 </clade>
3422                               </clade>
3423                             </clade>
3424                             <clade>
3425                               <name>VITVI</name>
3426                               <taxonomy>
3427                                 <id provider="eol">582304</id>
3428                                 <code>VITVI</code>
3429                                 <scientific_name>Vitis vinifera</scientific_name>
3430                                 <common_name>Grape</common_name>
3431                                 <rank>species</rank>
3432                               </taxonomy>
3433                             </clade>
3434                           </clade>
3435                           <clade>
3436                             <taxonomy>
3437                               <id provider="uniprot">91888</id>
3438                               <scientific_name>lamiids</scientific_name>
3439                             </taxonomy>
3440                             <clade>
3441                               <taxonomy>
3442                                 <id provider="uniprot">4070</id>
3443                                 <scientific_name>Solanaceae</scientific_name>
3444                                 <rank>family</rank>
3445                               </taxonomy>
3446                               <clade>
3447                                 <taxonomy>
3448                                   <id provider="uniprot">4107</id>
3449                                   <scientific_name>Solanum</scientific_name>
3450                                   <rank>genus</rank>
3451                                 </taxonomy>
3452                                 <clade>
3453                                   <taxonomy>
3454                                     <id provider="uniprot">49274</id>
3455                                     <scientific_name>Lycopersicon</scientific_name>
3456                                     <rank>subgenus</rank>
3457                                   </taxonomy>
3458                                   <clade>
3459                                     <taxonomy>
3460                                       <id provider="uniprot">4081</id>
3461                                       <code>SOLLC</code>
3462                                       <scientific_name>Solanum lycopersicum</scientific_name>
3463                                       <common_name>Tomato</common_name>
3464                                       <synonym>Lycopersicon esculentum</synonym>
3465                                       <rank>species</rank>
3466                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3467                                     </taxonomy>
3468                                   </clade>
3469                                   <clade>
3470                                     <taxonomy>
3471                                       <id provider="uniprot">4084</id>
3472                                       <code>SOLPI</code>
3473                                       <scientific_name>Solanum pimpinellifolium</scientific_name>
3474                                       <common_name>Currant tomato</common_name>
3475                                       <synonym>Lycopersicon pimpinellifolium</synonym>
3476                                       <rank>species</rank>
3477                                       <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>
3478                                     </taxonomy>
3479                                   </clade>
3480                                 </clade>
3481                                 <clade>
3482                                   <taxonomy>
3483                                     <id provider="4113">uniprot</id>
3484                                     <code>SOLTU</code>
3485                                     <scientific_name>Solanum tuberosum</scientific_name>
3486                                     <common_name>Potato</common_name>
3487                                     <rank>species</rank>
3488                                     <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>
3489                                   </taxonomy>
3490                                 </clade>
3491                               </clade>
3492                               <clade>
3493                                 <taxonomy>
3494                                   <id provider="uniprot">4097</id>
3495                                   <code>TOBAC</code>
3496                                   <scientific_name>Nicotiana tabacum</scientific_name>
3497                                   <common_name>Common tobacco</common_name>
3498                                   <rank>species</rank>
3499                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3500                                 </taxonomy>
3501                               </clade>
3502                             </clade>
3503                             <clade>
3504                               <name>MIMGU</name>
3505                               <taxonomy>
3506                                 <id provider="uniprot">4155</id>
3507                                 <code>MIMGU</code>
3508                                 <scientific_name>Mimulus guttatus</scientific_name>
3509                                 <common_name>Yellow monkey flower</common_name>
3510                                 <synonym>Yellow monkey flower</synonym>
3511                                 <rank>species</rank>
3512                               </taxonomy>
3513                             </clade>
3514                           </clade>
3515                         </clade>
3516                         <clade>
3517                           <name>AQUCA</name>
3518                           <taxonomy>
3519                             <id provider="uniprot">218851</id>
3520                             <code>AQUCA</code>
3521                             <scientific_name>Aquilegia caerulea</scientific_name>
3522                             <authority>E.James</authority>
3523                             <common_name>Rocky mountain columbine</common_name>
3524                             <synonym>Aquilegia coerulea</synonym>
3525                             <rank>species</rank>
3526                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3527                           </taxonomy>
3528                         </clade>
3529                       </clade>
3530                       <clade>
3531                         <taxonomy>
3532                           <id provider="uniprot">4479</id>
3533                           <scientific_name>Poaceae</scientific_name>
3534                           <common_name>grass family</common_name>
3535                           <synonym>Gramineae</synonym>
3536                           <rank>family</rank>
3537                         </taxonomy>
3538                         <clade>
3539                           <taxonomy>
3540                             <id provider="uniprot">147369</id>
3541                             <scientific_name>Panicoideae</scientific_name>
3542                             <authority>Link, 1827</authority>
3543                             <synonym>Centothecoideae</synonym>
3544                             <rank>subfamily</rank>
3545                           </taxonomy>
3546                           <clade>
3547                             <taxonomy>
3548                               <id provider="uniprot">147429</id>
3549                               <scientific_name>Andropogoneae</scientific_name>
3550                               <authority>Dumort., 1824</authority>
3551                               <rank>tribe</rank>
3552                             </taxonomy>
3553                             <clade>
3554                               <name>SORBI</name>
3555                               <taxonomy>
3556                                 <id provider="uniprot">4558</id>
3557                                 <code>SORBI</code>
3558                                 <scientific_name>Sorghum bicolor</scientific_name>
3559                                 <common_name>Sorghum</common_name>
3560                                 <synonym>Sorghum vulgare</synonym>
3561                                 <rank>species</rank>
3562                               </taxonomy>
3563                             </clade>
3564                             <clade>
3565                               <name>MAIZE</name>
3566                               <taxonomy>
3567                                 <id provider="uniprot">4577</id>
3568                                 <code>MAIZE</code>
3569                                 <scientific_name>Zea mays</scientific_name>
3570                                 <common_name>Maize</common_name>
3571                                 <rank>species</rank>
3572                               </taxonomy>
3573                             </clade>
3574                           </clade>
3575                           <clade>
3576                             <taxonomy>
3577                               <id provider="uniprot">147428</id>
3578                               <scientific_name>Paniceae</scientific_name>
3579                               <rank>tribe</rank>
3580                             </taxonomy>
3581                             <clade>
3582                               <name>PANVIR</name>
3583                               <taxonomy>
3584                                 <id provider="uniprot">38727</id>
3585                                 <scientific_name>Panicum virgatum</scientific_name>
3586                                 <common_name>switchgrass</common_name>
3587                                 <rank>species</rank>
3588                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3589                               </taxonomy>
3590                             </clade>
3591                             <clade>
3592                               <name>SETIT</name>
3593                               <taxonomy>
3594                                 <id provider="uniprot">4555</id>
3595                                 <code>SETIT</code>
3596                                 <scientific_name>Setaria italica</scientific_name>
3597                                 <common_name>Foxtail millet</common_name>
3598                                 <synonym>Panicum italicum</synonym>
3599                                 <rank>species</rank>
3600                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3601                               </taxonomy>
3602                             </clade>
3603                           </clade>
3604                         </clade>
3605                         <clade>
3606                           <taxonomy>
3607                             <id provider="uniprot">359160</id>
3608                             <scientific_name>BEP clade</scientific_name>
3609                           </taxonomy>
3610                           <clade>
3611                             <taxonomy>
3612                               <id provider="uniprot">4527</id>
3613                               <scientific_name>Oryza</scientific_name>
3614                               <rank>genus</rank>
3615                             </taxonomy>
3616                             <clade>
3617                               <name>ORYSA</name>
3618                               <taxonomy>
3619                                 <id provider="uniprot">4530</id>
3620                                 <code>ORYSA</code>
3621                                 <scientific_name>Oryza sativa</scientific_name>
3622                                 <common_name>Rice</common_name>
3623                                 <rank>species</rank>
3624                               </taxonomy>
3625                             </clade>
3626                             <clade>
3627                               <name>ORYSJ</name>
3628                               <taxonomy>
3629                                 <id provider="uniprot">39947</id>
3630                                 <code>ORYSJ</code>
3631                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3632                                 <common_name>Rice</common_name>
3633                               </taxonomy>
3634                             </clade>
3635                           </clade>
3636                           <clade>
3637                             <name>BRADI</name>
3638                             <taxonomy>
3639                               <id provider="uniprot">15368</id>
3640                               <code>BRADI</code>
3641                               <scientific_name>Brachypodium distachyon</scientific_name>
3642                               <common_name>Purple false brome</common_name>
3643                               <synonym>Trachynia distachya</synonym>
3644                               <rank>species</rank>
3645                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3646                             </taxonomy>
3647                           </clade>
3648                         </clade>
3649                       </clade>
3650                     </clade>
3651                     <clade>
3652                       <name>SELMO</name>
3653                       <taxonomy>
3654                         <id provider="uniprot">34167</id>
3655                         <code>SELMO</code>
3656                         <scientific_name>Selaginella mollis</scientific_name>
3657                         <common_name>Moss</common_name>
3658                         <rank>species</rank>
3659                       </taxonomy>
3660                     </clade>
3661                   </clade>
3662                   <clade>
3663                     <name>PHYPA</name>
3664                     <taxonomy>
3665                       <id provider="uniprot">145481</id>
3666                       <code>PHYPA</code>
3667                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3668                       <common_name>Moss</common_name>
3669                       <rank>subspecies</rank>
3670                     </taxonomy>
3671                   </clade>
3672                 </clade>
3673                 <clade>
3674                   <taxonomy>
3675                     <id provider="uniprot">3041</id>
3676                     <scientific_name>Chlorophyta</scientific_name>
3677                     <rank>phylum</rank>
3678                   </taxonomy>
3679                   <clade>
3680                     <taxonomy>
3681                       <id provider="uniprot">13792</id>
3682                       <scientific_name>Mamiellales</scientific_name>
3683                       <rank>order</rank>
3684                     </taxonomy>
3685                     <clade>
3686                       <taxonomy>
3687                         <id provider="uniprot">70447</id>
3688                         <scientific_name>Ostreococcus</scientific_name>
3689                         <rank>genus</rank>
3690                       </taxonomy>
3691                       <clade>
3692                         <name>OSTLU</name>
3693                         <taxonomy>
3694                           <id provider="uniprot">436017</id>
3695                           <code>OSTLU</code>
3696                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3697                         </taxonomy>
3698                       </clade>
3699                       <clade>
3700                         <name>OSTRC</name>
3701                         <taxonomy>
3702                           <id provider="uniprot">385169</id>
3703                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3704                           <rank>species</rank>
3705                         </taxonomy>
3706                       </clade>
3707                       <clade>
3708                         <name>OSTTA</name>
3709                         <taxonomy>
3710                           <id provider="uniprot">70448</id>
3711                           <code>OSTTA</code>
3712                           <scientific_name>Ostreococcus tauri</scientific_name>
3713                           <rank>species</rank>
3714                         </taxonomy>
3715                       </clade>
3716                     </clade>
3717                     <clade>
3718                       <taxonomy>
3719                         <id provider="uniprot">38832</id>
3720                         <scientific_name>Micromonas</scientific_name>
3721                         <rank>genus</rank>
3722                       </taxonomy>
3723                       <clade>
3724                         <name>MICPC</name>
3725                         <taxonomy>
3726                           <id provider="uniprot">564608</id>
3727                           <code>MICPC</code>
3728                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3729                           <common_name>Picoplanktonic green alga</common_name>
3730                         </taxonomy>
3731                       </clade>
3732                       <clade>
3733                         <name>MICSR</name>
3734                         <taxonomy>
3735                           <id provider="uniprot">296587</id>
3736                           <code>MICSR</code>
3737                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3738                           <common_name>Picoplanktonic green alga</common_name>
3739                           <synonym>Micromonas sp. RCC299</synonym>
3740                           <rank>species</rank>
3741                         </taxonomy>
3742                       </clade>
3743                     </clade>
3744                   </clade>
3745                   <clade>
3746                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3747                     <clade>
3748                       <taxonomy>
3749                         <id provider="uniprot">75966</id>
3750                         <scientific_name>Trebouxiophyceae</scientific_name>
3751                         <rank>class</rank>
3752                       </taxonomy>
3753                       <clade>
3754                         <name>ASTSPC</name>
3755                         <taxonomy>
3756                           <id provider="uniprot">763042</id>
3757                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
3758                           <rank>species</rank>
3759                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
3760                         </taxonomy>
3761                       </clade>
3762                       <clade>
3763                         <name>CHLSP</name>
3764                         <taxonomy>
3765                           <id provider="uniprot">554065</id>
3766                           <scientific_name>Chlorella variabilis</scientific_name>
3767                           <synonym>Chlorella sp. NC64A</synonym>
3768                           <rank>species</rank>
3769                         </taxonomy>
3770                       </clade>
3771                       <clade>
3772                         <name>CHLVUL</name>
3773                         <taxonomy>
3774                           <id provider="uniprot">574566</id>
3775                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3776                           <synonym>Chlorella vulgaris C-169</synonym>
3777                           <rank>species</rank>
3778                         </taxonomy>
3779                       </clade>
3780                     </clade>
3781                     <clade>
3782                       <taxonomy>
3783                         <id provider="uniprot">3042</id>
3784                         <scientific_name>Chlamydomonadales</scientific_name>
3785                         <rank>order</rank>
3786                       </taxonomy>
3787                       <clade>
3788                         <name>CHLRE</name>
3789                         <taxonomy>
3790                           <id provider="uniprot">3055</id>
3791                           <code>CHLRE</code>
3792                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3793                           <synonym>Chlamydomonas smithii</synonym>
3794                           <rank>species</rank>
3795                         </taxonomy>
3796                       </clade>
3797                       <clade>
3798                         <name>VOLCA</name>
3799                         <taxonomy>
3800                           <id provider="uniprot">3067</id>
3801                           <code>VOLCA</code>
3802                           <scientific_name>Volvox carteri</scientific_name>
3803                           <common_name>Green alga</common_name>
3804                           <rank>species</rank>
3805                         </taxonomy>
3806                       </clade>
3807                     </clade>
3808                   </clade>
3809                 </clade>
3810               </clade>
3811               <clade>
3812                 <name>CYAME</name>
3813                 <taxonomy>
3814                   <id provider="uniprot">45157</id>
3815                   <code>CYAME</code>
3816                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3817                   <common_name>Red alga</common_name>
3818                   <rank>species</rank>
3819                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3820                 </taxonomy>
3821               </clade>
3822             </clade>
3823             <clade>
3824               <name>Chromalveolate</name>
3825               <reference doi="10.1073/pnas.0712248105">
3826               </reference>
3827               <clade>
3828                 <name>Heterokonta_Alveolata</name>
3829                 <clade>
3830                   <name>Alveolata</name>
3831                   <taxonomy>
3832                     <id provider="uniprot">33630</id>
3833                     <scientific_name>Alveolata</scientific_name>
3834                   </taxonomy>
3835                   <clade>
3836                     <taxonomy>
3837                       <id provider="uniprot">5794</id>
3838                       <scientific_name>Apicomplexa</scientific_name>
3839                       <rank>phylum</rank>
3840                     </taxonomy>
3841                     <clade>
3842                       <taxonomy>
3843                         <id provider="uniprot">422676</id>
3844                         <scientific_name>Aconoidasida</scientific_name>
3845                         <rank>class</rank>
3846                       </taxonomy>
3847                       <clade>
3848                         <taxonomy>
3849                           <id provider="uniprot">5820</id>
3850                           <scientific_name>Plasmodium</scientific_name>
3851                           <rank>genus</rank>
3852                         </taxonomy>
3853                         <clade>
3854                           <name>PLACH</name>
3855                           <taxonomy>
3856                             <id provider="uniprot">5825</id>
3857                             <code>PLACH</code>
3858                             <scientific_name>Plasmodium chabaudi</scientific_name>
3859                             <rank>species</rank>
3860                           </taxonomy>
3861                         </clade>
3862                         <clade>
3863                           <name>PLAFA</name>
3864                           <taxonomy>
3865                             <id provider="uniprot">5833</id>
3866                             <code>PLAFA</code>
3867                             <scientific_name>Plasmodium falciparum</scientific_name>
3868                             <rank>species</rank>
3869                           </taxonomy>
3870                         </clade>
3871                         <clade>
3872                           <name>PLAYO</name>
3873                           <taxonomy>
3874                             <id provider="uniprot">73239</id>
3875                             <code>PLAYO</code>
3876                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3877                             <rank>subspecies</rank>
3878                           </taxonomy>
3879                         </clade>
3880                       </clade>
3881                       <clade>
3882                         <name>Theileria</name>
3883                         <taxonomy>
3884                           <id provider="uniprot">5873</id>
3885                           <scientific_name>Theileria</scientific_name>
3886                           <rank>genus</rank>
3887                         </taxonomy>
3888                         <clade>
3889                           <name>THEAN</name>
3890                           <taxonomy>
3891                             <id provider="uniprot">5874</id>
3892                             <code>THEAN</code>
3893                             <scientific_name>Theileria annulata</scientific_name>
3894                             <rank>species</rank>
3895                           </taxonomy>
3896                         </clade>
3897                         <clade>
3898                           <name>THEPA</name>
3899                           <taxonomy>
3900                             <id provider="uniprot">5875</id>
3901                             <code>THEPA</code>
3902                             <scientific_name>Theileria parva</scientific_name>
3903                             <rank>species</rank>
3904                           </taxonomy>
3905                         </clade>
3906                       </clade>
3907                     </clade>
3908                     <clade>
3909                       <taxonomy>
3910                         <id provider="uniprot">423054</id>
3911                         <scientific_name>Eimeriorina</scientific_name>
3912                         <rank>suborder</rank>
3913                       </taxonomy>
3914                       <clade>
3915                         <taxonomy>
3916                           <id provider="uniprot">5806</id>
3917                           <scientific_name>Cryptosporidium</scientific_name>
3918                           <rank>genus</rank>
3919                         </taxonomy>
3920                         <clade>
3921                           <name>CRYHO</name>
3922                           <taxonomy>
3923                             <id provider="uniprot">237895</id>
3924                             <code>CRYHO</code>
3925                             <scientific_name>Cryptosporidium hominis</scientific_name>
3926                             <rank>species</rank>
3927                           </taxonomy>
3928                         </clade>
3929                         <clade>
3930                           <name>CRYPV</name>
3931                           <taxonomy>
3932                             <id provider="uniprot">5807</id>
3933                             <code>CRYPV</code>
3934                             <scientific_name>Cryptosporidium parvum</scientific_name>
3935                             <rank>species</rank>
3936                           </taxonomy>
3937                         </clade>
3938                       </clade>
3939                       <clade>
3940                         <name>Eimeria &amp; Toxoplasma</name>
3941                         <reference doi="10.1093/molbev/msn213">
3942                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3943                         </reference>
3944                         <reference>
3945                         </reference>
3946                         <clade>
3947                           <taxonomy>
3948                             <id provider="uniprot">5802</id>
3949                             <code>EIMTE</code>
3950                             <scientific_name>Eimeria tenella</scientific_name>
3951                             <common_name>Coccidian parasite</common_name>
3952                             <rank>species</rank>
3953                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3954                           </taxonomy>
3955                         </clade>
3956                         <clade>
3957                           <name>TOXGO</name>
3958                           <taxonomy>
3959                             <id provider="uniprot">5811</id>
3960                             <code>TOXGO</code>
3961                             <scientific_name>Toxoplasma gondii</scientific_name>
3962                             <rank>species</rank>
3963                           </taxonomy>
3964                         </clade>
3965                       </clade>
3966                     </clade>
3967                   </clade>
3968                   <clade>
3969                     <taxonomy>
3970                       <id provider="uniprot">6020</id>
3971                       <scientific_name>Oligohymenophorea</scientific_name>
3972                       <rank>class</rank>
3973                     </taxonomy>
3974                     <clade>
3975                       <name>PARTE</name>
3976                       <taxonomy>
3977                         <id provider="uniprot">5888</id>
3978                         <code>PARTE</code>
3979                         <scientific_name>Paramecium tetraurelia</scientific_name>
3980                         <rank>species</rank>
3981                       </taxonomy>
3982                     </clade>
3983                     <clade>
3984                       <name>TETTH</name>
3985                       <taxonomy>
3986                         <id provider="uniprot">5911</id>
3987                         <code>TETTH</code>
3988                         <scientific_name>Tetrahymena thermophila</scientific_name>
3989                         <rank>species</rank>
3990                       </taxonomy>
3991                     </clade>
3992                   </clade>
3993                 </clade>
3994                 <clade>
3995                   <name>Heterokonta</name>
3996                   <taxonomy>
3997                     <id provider="uniprot">33634</id>
3998                     <scientific_name>stramenopiles</scientific_name>
3999                     <synonym>Chromophyta</synonym>
4000                   </taxonomy>
4001                   <clade>
4002                     <name>Pelagophyceae_Bacillariophyta</name>
4003                     <clade>
4004                       <taxonomy>
4005                         <id provider="uniprot">2836</id>
4006                         <scientific_name>Bacillariophyta</scientific_name>
4007                         <common_name>diatoms</common_name>
4008                         <rank>phylum</rank>
4009                       </taxonomy>
4010                       <clade>
4011                         <taxonomy>
4012                           <id provider="uniprot">33850</id>
4013                           <scientific_name>Bacillariophycidae</scientific_name>
4014                         </taxonomy>
4015                         <clade>
4016                           <name>FRACY</name>
4017                           <taxonomy>
4018                             <id provider="eol">911694</id>
4019                             <code>FRACY</code>
4020                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
4021                             <authority>Krieger</authority>
4022                             <synonym>Nitzschia cylindrus</synonym>
4023                             <rank>species</rank>
4024                           </taxonomy>
4025                         </clade>
4026                         <clade>
4027                           <name>PHATR</name>
4028                           <taxonomy>
4029                             <id provider="eol">912693</id>
4030                             <code>PHATR</code>
4031                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
4032                             <authority>Bohlin</authority>
4033                             <rank>species</rank>
4034                           </taxonomy>
4035                         </clade>
4036                       </clade>
4037                       <clade>
4038                         <name>THAPS</name>
4039                         <taxonomy>
4040                           <id provider="eol">916868</id>
4041                           <code>THAPS</code>
4042                           <scientific_name>Thalassiosira pseudonana</scientific_name>
4043                           <authority>Hasle &amp; Heimdal</authority>
4044                           <common_name>Marine diatom</common_name>
4045                           <synonym>Cyclotella nana</synonym>
4046                           <rank>species</rank>
4047                         </taxonomy>
4048                       </clade>
4049                     </clade>
4050                     <clade>
4051                       <name>AURAN</name>
4052                       <taxonomy>
4053                         <id provider="eol">912461</id>
4054                         <code>AURAN</code>
4055                         <scientific_name>Aureococcus anophagefferens</scientific_name>
4056                         <authority>Hargraves &amp; Sieburth</authority>
4057                         <rank>species</rank>
4058                       </taxonomy>
4059                     </clade>
4060                   </clade>
4061                   <clade>
4062                     <taxonomy>
4063                       <id provider="uniprot">4783</id>
4064                       <scientific_name>Phytophthora</scientific_name>
4065                       <rank>genus</rank>
4066                     </taxonomy>
4067                     <clade>
4068                       <name>PHYIN</name>
4069                       <taxonomy>
4070                         <id provider="uniprot">4787</id>
4071                         <code>PHYIN</code>
4072                         <scientific_name>Phytophthora infestans</scientific_name>
4073                         <common_name>Potato late blight fungus</common_name>
4074                         <rank>species</rank>
4075                       </taxonomy>
4076                     </clade>
4077                     <clade>
4078                       <name>PHYRM</name>
4079                       <taxonomy>
4080                         <id provider="uniprot">164328</id>
4081                         <code>PHYRM</code>
4082                         <scientific_name>Phytophthora ramorum</scientific_name>
4083                         <common_name>Sudden oak death agent</common_name>
4084                         <rank>species</rank>
4085                       </taxonomy>
4086                     </clade>
4087                     <clade>
4088                       <name>PHYSO</name>
4089                       <taxonomy>
4090                         <id provider="uniprot">67593</id>
4091                         <scientific_name>Phytophthora sojae</scientific_name>
4092                         <rank>species</rank>
4093                       </taxonomy>
4094                     </clade>
4095                   </clade>
4096                 </clade>
4097               </clade>
4098               <clade>
4099                 <name>EMIHU</name>
4100                 <taxonomy>
4101                   <id provider="uniprot">2903</id>
4102                   <code>EMIHU</code>
4103                   <scientific_name>Emiliania huxleyi</scientific_name>
4104                   <rank>species</rank>
4105                 </taxonomy>
4106               </clade>
4107             </clade>
4108           </clade>
4109           <clade>
4110             <name>Excavata</name>
4111             <reference doi="10.1038/nature04546">
4112             </reference>
4113             <clade>
4114               <name>Kinetoplastida_Heterolobosea</name>
4115               <clade>
4116                 <taxonomy>
4117                   <id provider="uniprot">5654</id>
4118                   <scientific_name>Trypanosomatidae</scientific_name>
4119                   <rank>family</rank>
4120                 </taxonomy>
4121                 <clade>
4122                   <name>LEIMA</name>
4123                   <taxonomy>
4124                     <id provider="uniprot">5664</id>
4125                     <code>LEIMA</code>
4126                     <scientific_name>Leishmania major</scientific_name>
4127                     <rank>species</rank>
4128                   </taxonomy>
4129                 </clade>
4130                 <clade>
4131                   <name>TRYBB</name>
4132                   <taxonomy>
4133                     <id provider="uniprot">5702</id>
4134                     <code>TRYBB</code>
4135                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
4136                     <rank>subspecies</rank>
4137                   </taxonomy>
4138                 </clade>
4139               </clade>
4140               <clade>
4141                 <name>NAEGR</name>
4142                 <taxonomy>
4143                   <id provider="uniprot">5762</id>
4144                   <code>NAEGR</code>
4145                   <scientific_name>Naegleria gruberi</scientific_name>
4146                   <common_name>Amoeba</common_name>
4147                   <rank>species</rank>
4148                 </taxonomy>
4149               </clade>
4150             </clade>
4151             <clade>
4152               <name>Metamonada</name>
4153               <clade>
4154                 <name>GIALA</name>
4155                 <taxonomy>
4156                   <id provider="uniprot">5741</id>
4157                   <code>GIALA</code>
4158                   <scientific_name>Giardia lamblia</scientific_name>
4159                   <synonym>Giardia intestinalis</synonym>
4160                   <synonym>Giardia lamblia</synonym>
4161                   <rank>species</rank>
4162                 </taxonomy>
4163               </clade>
4164               <clade>
4165                 <name>TRIVA</name>
4166                 <taxonomy>
4167                   <id provider="uniprot">5722</id>
4168                   <code>TRIVA</code>
4169                   <scientific_name>Trichomonas vaginalis</scientific_name>
4170                   <rank>species</rank>
4171                 </taxonomy>
4172               </clade>
4173             </clade>
4174           </clade>
4175         </clade>
4176       </clade>
4177       <clade>
4178         <name>Archaea</name>
4179         <taxonomy>
4180           <id provider="uniprot">2157</id>
4181           <scientific_name>Archaea</scientific_name>
4182           <rank>superkingdom</rank>
4183         </taxonomy>
4184         <clade>
4185           <name>a_62</name>
4186           <clade>
4187             <name>a_56</name>
4188             <clade>
4189               <taxonomy>
4190                 <id provider="uniprot">28890</id>
4191                 <scientific_name>Euryarchaeota</scientific_name>
4192                 <rank>phylum</rank>
4193               </taxonomy>
4194               <clade>
4195                 <name>a_44</name>
4196                 <clade>
4197                   <name>a_28</name>
4198                   <clade>
4199                     <name>a_26</name>
4200                     <clade>
4201                       <taxonomy>
4202                         <id provider="uniprot">224756</id>
4203                         <scientific_name>Methanomicrobia</scientific_name>
4204                         <rank>class</rank>
4205                       </taxonomy>
4206                       <clade>
4207                         <name>a_14</name>
4208                         <clade>
4209                           <name>a_12</name>
4210                           <clade>
4211                             <taxonomy>
4212                               <id provider="uniprot">2206</id>
4213                               <scientific_name>Methanosarcinaceae</scientific_name>
4214                               <rank>family</rank>
4215                             </taxonomy>
4216                             <clade>
4217                               <taxonomy>
4218                                 <id provider="uniprot">2207</id>
4219                                 <scientific_name>Methanosarcina</scientific_name>
4220                                 <rank>genus</rank>
4221                               </taxonomy>
4222                               <clade>
4223                                 <name>a_2</name>
4224                                 <clade>
4225                                   <name>METAC</name>
4226                                   <taxonomy>
4227                                     <id provider="uniprot">2214</id>
4228                                     <code>METAC</code>
4229                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
4230                                     <rank>species</rank>
4231                                   </taxonomy>
4232                                 </clade>
4233                                 <clade>
4234                                   <name>METBF</name>
4235                                   <taxonomy>
4236                                     <id provider="uniprot">269797</id>
4237                                     <code>METBF</code>
4238                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
4239                                   </taxonomy>
4240                                 </clade>
4241                               </clade>
4242                               <clade>
4243                                 <name>METMA</name>
4244                                 <taxonomy>
4245                                   <id provider="uniprot">2209</id>
4246                                   <code>METMA</code>
4247                                   <scientific_name>Methanosarcina mazei</scientific_name>
4248                                   <synonym>Methanosarcina frisia</synonym>
4249                                   <rank>species</rank>
4250                                 </taxonomy>
4251                               </clade>
4252                             </clade>
4253                             <clade>
4254                               <name>METBU</name>
4255                               <taxonomy>
4256                                 <id provider="uniprot">259564</id>
4257                                 <code>METBU</code>
4258                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
4259                               </taxonomy>
4260                             </clade>
4261                           </clade>
4262                           <clade>
4263                             <name>a_11</name>
4264                             <taxonomy>
4265                               <id provider="uniprot">2191</id>
4266                               <scientific_name>Methanomicrobiales</scientific_name>
4267                               <rank>order</rank>
4268                             </taxonomy>
4269                             <clade>
4270                               <name>a_9</name>
4271                               <clade>
4272                                 <name>METB6</name>
4273                                 <taxonomy>
4274                                   <id provider="uniprot">456442</id>
4275                                   <code>METB6</code>
4276                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
4277                                 </taxonomy>
4278                               </clade>
4279                               <clade>
4280                                 <name>METHU</name>
4281                                 <taxonomy>
4282                                   <id provider="uniprot">2203</id>
4283                                   <code>METHU</code>
4284                                   <scientific_name>Methanospirillum hungatei</scientific_name>
4285                                   <rank>species</rank>
4286                                 </taxonomy>
4287                               </clade>
4288                             </clade>
4289                             <clade>
4290                               <name>METMJ</name>
4291                               <taxonomy>
4292                                 <id provider="uniprot">368407</id>
4293                                 <code>METMJ</code>
4294                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4295                               </taxonomy>
4296                             </clade>
4297                           </clade>
4298                         </clade>
4299                         <clade>
4300                           <name>METLZ</name>
4301                           <taxonomy>
4302                             <id provider="uniprot">410358</id>
4303                             <code>METLZ</code>
4304                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4305                           </taxonomy>
4306                         </clade>
4307                       </clade>
4308                       <clade>
4309                         <name>METTP</name>
4310                         <taxonomy>
4311                           <id provider="uniprot">349307</id>
4312                           <code>METTP</code>
4313                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4314                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4315                         </taxonomy>
4316                       </clade>
4317                     </clade>
4318                     <clade>
4319                       <name>a_25</name>
4320                       <taxonomy>
4321                         <id provider="uniprot">2236</id>
4322                         <scientific_name>Halobacteriaceae</scientific_name>
4323                         <rank>family</rank>
4324                       </taxonomy>
4325                       <clade>
4326                         <name>a_23</name>
4327                         <clade>
4328                           <name>a_19</name>
4329                           <clade>
4330                             <name>HALMA</name>
4331                             <taxonomy>
4332                               <id provider="uniprot">2238</id>
4333                               <code>HALMA</code>
4334                               <scientific_name>Haloarcula marismortui</scientific_name>
4335                               <synonym>Halobacterium marismortui</synonym>
4336                               <rank>species</rank>
4337                             </taxonomy>
4338                           </clade>
4339                           <clade>
4340                             <name>NATPH</name>
4341                             <taxonomy>
4342                               <id provider="uniprot">2257</id>
4343                               <code>NATPH</code>
4344                               <scientific_name>Natronomonas pharaonis</scientific_name>
4345                               <common_name>Natronobacterium pharaonis</common_name>
4346                               <rank>species</rank>
4347                             </taxonomy>
4348                           </clade>
4349                         </clade>
4350                         <clade>
4351                           <name>a_22</name>
4352                           <taxonomy>
4353                             <id provider="uniprot">2239</id>
4354                             <scientific_name>Halobacterium</scientific_name>
4355                             <rank>genus</rank>
4356                           </taxonomy>
4357                           <clade>
4358                             <name>HALS3</name>
4359                             <taxonomy>
4360                               <id provider="uniprot">478009</id>
4361                               <code>HALS3</code>
4362                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4363                             </taxonomy>
4364                           </clade>
4365                           <clade>
4366                             <name>HALSP</name>
4367                             <taxonomy>
4368                               <id provider="uniprot">2243</id>
4369                               <code>HALSP</code>
4370                               <scientific_name>Halobacterium sp.</scientific_name>
4371                               <rank>species</rank>
4372                             </taxonomy>
4373                           </clade>
4374                         </clade>
4375                       </clade>
4376                       <clade>
4377                         <name>HALWD</name>
4378                         <taxonomy>
4379                           <id provider="uniprot">362976</id>
4380                           <code>HALWD</code>
4381                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4382                         </taxonomy>
4383                       </clade>
4384                     </clade>
4385                   </clade>
4386                   <clade>
4387                     <name>ARCFU</name>
4388                     <taxonomy>
4389                       <id provider="uniprot">2234</id>
4390                       <code>ARCFU</code>
4391                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4392                       <rank>species</rank>
4393                     </taxonomy>
4394                   </clade>
4395                 </clade>
4396                 <clade>
4397                   <name>a_43</name>
4398                   <clade>
4399                     <name>a_41</name>
4400                     <clade>
4401                       <name>a_35</name>
4402                       <taxonomy>
4403                         <id provider="uniprot">2182</id>
4404                         <scientific_name>Methanococcales</scientific_name>
4405                         <rank>order</rank>
4406                       </taxonomy>
4407                       <clade>
4408                         <name>a_31</name>
4409                         <clade>
4410                           <name>METJA</name>
4411                           <taxonomy>
4412                             <id provider="uniprot">2190</id>
4413                             <code>METJA</code>
4414                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4415                             <synonym>Methanococcus jannaschii</synonym>
4416                             <rank>species</rank>
4417                           </taxonomy>
4418                         </clade>
4419                         <clade>
4420                           <name>META3</name>
4421                           <taxonomy>
4422                             <id provider="uniprot">419665</id>
4423                             <code>META3</code>
4424                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4425                           </taxonomy>
4426                         </clade>
4427                       </clade>
4428                       <clade>
4429                         <name>a_34</name>
4430                         <taxonomy>
4431                           <id provider="uniprot">2184</id>
4432                           <scientific_name>Methanococcus</scientific_name>
4433                           <rank>genus</rank>
4434                         </taxonomy>
4435                         <clade>
4436                           <name>METMP</name>
4437                           <taxonomy>
4438                             <id provider="uniprot">39152</id>
4439                             <code>METMP</code>
4440                             <scientific_name>Methanococcus maripaludis</scientific_name>
4441                             <synonym>Methanococcus deltae</synonym>
4442                             <rank>species</rank>
4443                           </taxonomy>
4444                         </clade>
4445                         <clade>
4446                           <name>METVS</name>
4447                           <taxonomy>
4448                             <id provider="uniprot">406327</id>
4449                             <code>METVS</code>
4450                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4451                           </taxonomy>
4452                         </clade>
4453                       </clade>
4454                     </clade>
4455                     <clade>
4456                       <name>a_40</name>
4457                       <taxonomy>
4458                         <id provider="uniprot">2159</id>
4459                         <scientific_name>Methanobacteriaceae</scientific_name>
4460                         <rank>family</rank>
4461                       </taxonomy>
4462                       <clade>
4463                         <name>a_38</name>
4464                         <clade>
4465                           <name>METS3</name>
4466                           <taxonomy>
4467                             <id provider="uniprot">420247</id>
4468                             <code>METS3</code>
4469                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4470                           </taxonomy>
4471                         </clade>
4472                         <clade>
4473                           <name>METST</name>
4474                           <taxonomy>
4475                             <id provider="uniprot">339860</id>
4476                             <code>METST</code>
4477                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4478                           </taxonomy>
4479                         </clade>
4480                       </clade>
4481                       <clade>
4482                         <name>METTH</name>
4483                         <taxonomy>
4484                           <id provider="uniprot">187420</id>
4485                           <code>METTH</code>
4486                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4487                         </taxonomy>
4488                       </clade>
4489                     </clade>
4490                   </clade>
4491                   <clade>
4492                     <name>METKA</name>
4493                     <taxonomy>
4494                       <id provider="uniprot">2320</id>
4495                       <code>METKA</code>
4496                       <scientific_name>Methanopyrus kandleri</scientific_name>
4497                       <rank>species</rank>
4498                     </taxonomy>
4499                   </clade>
4500                 </clade>
4501               </clade>
4502               <clade>
4503                 <name>a_51</name>
4504                 <taxonomy>
4505                   <id provider="uniprot">2259</id>
4506                   <scientific_name>Thermococcaceae</scientific_name>
4507                   <rank>family</rank>
4508                 </taxonomy>
4509                 <clade>
4510                   <name>a_47</name>
4511                   <clade>
4512                     <name>PYRFU</name>
4513                     <taxonomy>
4514                       <id provider="uniprot">2261</id>
4515                       <code>PYRFU</code>
4516                       <scientific_name>Pyrococcus furiosus</scientific_name>
4517                       <rank>species</rank>
4518                     </taxonomy>
4519                   </clade>
4520                   <clade>
4521                     <taxonomy>
4522                       <id provider="uniprot">69014</id>
4523                       <code>PYRKO</code>
4524                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4525                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4526                     </taxonomy>
4527                   </clade>
4528                 </clade>
4529                 <clade>
4530                   <name>a_50</name>
4531                   <taxonomy>
4532                     <id provider="uniprot">2260</id>
4533                     <scientific_name>Pyrococcus</scientific_name>
4534                     <rank>genus</rank>
4535                   </taxonomy>
4536                   <clade>
4537                     <name>PYRAB</name>
4538                     <taxonomy>
4539                       <id provider="uniprot">29292</id>
4540                       <code>PYRAB</code>
4541                       <scientific_name>Pyrococcus abyssi</scientific_name>
4542                       <rank>species</rank>
4543                     </taxonomy>
4544                   </clade>
4545                   <clade>
4546                     <name>PYRHO</name>
4547                     <taxonomy>
4548                       <id provider="uniprot">53953</id>
4549                       <code>PYRHO</code>
4550                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4551                       <rank>species</rank>
4552                     </taxonomy>
4553                   </clade>
4554                 </clade>
4555               </clade>
4556             </clade>
4557             <clade>
4558               <name>a_55</name>
4559               <clade>
4560                 <name>NANEQ</name>
4561                 <taxonomy>
4562                   <id provider="uniprot">228908</id>
4563                   <code>NANEQ</code>
4564                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4565                 </taxonomy>
4566               </clade>
4567               <clade>
4568                 <taxonomy>
4569                   <id provider="uniprot">436308</id>
4570                   <code>NITMS</code>
4571                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4572                 </taxonomy>
4573               </clade>
4574             </clade>
4575           </clade>
4576           <clade>
4577             <taxonomy>
4578               <id provider="uniprot">2301</id>
4579               <scientific_name>Thermoplasmatales</scientific_name>
4580               <rank>order</rank>
4581             </taxonomy>
4582             <clade>
4583               <name>a_59</name>
4584               <taxonomy>
4585                 <id provider="uniprot">2302</id>
4586                 <scientific_name>Thermoplasma</scientific_name>
4587                 <rank>genus</rank>
4588               </taxonomy>
4589               <clade>
4590                 <name>THEAC</name>
4591                 <taxonomy>
4592                   <id provider="uniprot">273075</id>
4593                   <code>THEAC</code>
4594                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4595                 </taxonomy>
4596               </clade>
4597               <clade>
4598                 <name>THEVO</name>
4599                 <taxonomy>
4600                   <id provider="uniprot">273116</id>
4601                   <code>THEVO</code>
4602                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4603                 </taxonomy>
4604               </clade>
4605             </clade>
4606             <clade>
4607               <name>PICTO</name>
4608               <taxonomy>
4609                 <id provider="uniprot">263820</id>
4610                 <code>PICTO</code>
4611                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4612               </taxonomy>
4613             </clade>
4614           </clade>
4615         </clade>
4616         <clade>
4617           <name>a_93</name>
4618           <clade>
4619             <taxonomy>
4620               <id provider="uniprot">183924</id>
4621               <scientific_name>Thermoprotei</scientific_name>
4622               <rank>class</rank>
4623             </taxonomy>
4624             <clade>
4625               <name>a_83</name>
4626               <clade>
4627                 <name>a_81</name>
4628                 <clade>
4629                   <name>a_73</name>
4630                   <taxonomy>
4631                     <id provider="uniprot">2267</id>
4632                     <scientific_name>Thermoproteaceae</scientific_name>
4633                     <rank>family</rank>
4634                   </taxonomy>
4635                   <clade>
4636                     <name>a_71</name>
4637                     <clade>
4638                       <name>a_67</name>
4639                       <taxonomy>
4640                         <id provider="uniprot">2276</id>
4641                         <scientific_name>Pyrobaculum</scientific_name>
4642                         <rank>genus</rank>
4643                       </taxonomy>
4644                       <clade>
4645                         <name>a_65</name>
4646                         <clade>
4647                           <name>PYRAR</name>
4648                           <taxonomy>
4649                             <id provider="uniprot">340102</id>
4650                             <code>PYRAR</code>
4651                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
4652                           </taxonomy>
4653                         </clade>
4654                         <clade>
4655                           <name>PYRCJ</name>
4656                           <taxonomy>
4657                             <id provider="uniprot">410359</id>
4658                             <code>PYRCJ</code>
4659                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
4660                           </taxonomy>
4661                         </clade>
4662                       </clade>
4663                       <clade>
4664                         <name>PYRAE</name>
4665                         <taxonomy>
4666                           <id provider="uniprot">13773</id>
4667                           <code>PYRAE</code>
4668                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
4669                           <rank>species</rank>
4670                         </taxonomy>
4671                       </clade>
4672                     </clade>
4673                     <clade>
4674                       <name>a_70</name>
4675                       <clade>
4676                         <name>PYRIL</name>
4677                         <taxonomy>
4678                           <id provider="uniprot">384616</id>
4679                           <code>PYRIL</code>
4680                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
4681                         </taxonomy>
4682                       </clade>
4683                       <clade>
4684                         <name>THENV</name>
4685                         <taxonomy>
4686                           <id provider="uniprot">444157</id>
4687                           <code>THENV</code>
4688                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
4689                         </taxonomy>
4690                       </clade>
4691                     </clade>
4692                   </clade>
4693                   <clade>
4694                     <taxonomy>
4695                       <id provider="uniprot">397948</id>
4696                       <code>CALMQ</code>
4697                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
4698                     </taxonomy>
4699                   </clade>
4700                 </clade>
4701                 <clade>
4702                   <name>a_80</name>
4703                   <taxonomy>
4704                     <id provider="uniprot">118883</id>
4705                     <scientific_name>Sulfolobaceae</scientific_name>
4706                     <rank>family</rank>
4707                   </taxonomy>
4708                   <clade>
4709                     <name>a_78</name>
4710                     <taxonomy>
4711                       <id provider="uniprot">2284</id>
4712                       <scientific_name>Sulfolobus</scientific_name>
4713                       <rank>genus</rank>
4714                     </taxonomy>
4715                     <clade>
4716                       <name>a_76</name>
4717                       <clade>
4718                         <name>SULAC</name>
4719                         <taxonomy>
4720                           <id provider="uniprot">2285</id>
4721                           <code>SULAC</code>
4722                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
4723                           <rank>species</rank>
4724                         </taxonomy>
4725                       </clade>
4726                       <clade>
4727                         <name>SULTO</name>
4728                         <taxonomy>
4729                           <id provider="uniprot">273063</id>
4730                           <code>SULTO</code>
4731                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
4732                         </taxonomy>
4733                       </clade>
4734                     </clade>
4735                     <clade>
4736                       <name>SULSO</name>
4737                       <taxonomy>
4738                         <id provider="uniprot">2287</id>
4739                         <code>SULSO</code>
4740                         <scientific_name>Sulfolobus solfataricus</scientific_name>
4741                         <rank>species</rank>
4742                       </taxonomy>
4743                     </clade>
4744                   </clade>
4745                   <clade>
4746                     <name>METS5</name>
4747                     <taxonomy>
4748                       <id provider="uniprot">399549</id>
4749                       <code>METS5</code>
4750                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
4751                     </taxonomy>
4752                   </clade>
4753                 </clade>
4754               </clade>
4755               <clade>
4756                 <name>AERPE</name>
4757                 <taxonomy>
4758                   <id provider="uniprot">56636</id>
4759                   <code>AERPE</code>
4760                   <scientific_name>Aeropyrum pernix</scientific_name>
4761                   <rank>species</rank>
4762                 </taxonomy>
4763               </clade>
4764             </clade>
4765             <clade>
4766               <name>a_90</name>
4767               <clade>
4768                 <name>a_88</name>
4769                 <clade>
4770                   <name>a_86</name>
4771                   <clade>
4772                     <name>STAMF</name>
4773                     <taxonomy>
4774                       <id provider="uniprot">399550</id>
4775                       <code>STAMF</code>
4776                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
4777                     </taxonomy>
4778                   </clade>
4779                   <clade>
4780                     <name>THEPD</name>
4781                     <taxonomy>
4782                       <id provider="uniprot">368408</id>
4783                       <code>THEPD</code>
4784                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
4785                     </taxonomy>
4786                   </clade>
4787                 </clade>
4788                 <clade>
4789                   <name>HYPBU</name>
4790                   <taxonomy>
4791                     <id provider="uniprot">415426</id>
4792                     <code>HYPBU</code>
4793                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
4794                   </taxonomy>
4795                 </clade>
4796               </clade>
4797               <clade>
4798                 <name>IGNH4</name>
4799                 <taxonomy>
4800                   <id provider="uniprot">453591</id>
4801                   <code>IGNH4</code>
4802                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
4803                 </taxonomy>
4804               </clade>
4805             </clade>
4806           </clade>
4807           <clade>
4808             <taxonomy>
4809               <id provider="uniprot">374847</id>
4810               <code>KORCO</code>
4811               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
4812             </taxonomy>
4813           </clade>
4814         </clade>
4815       </clade>
4816     </clade>
4817     <clade>
4818       <taxonomy>
4819         <id provider="uniprot">2</id>
4820         <scientific_name>Bacteria</scientific_name>
4821         <rank>superkingdom</rank>
4822       </taxonomy>
4823       <clade>
4824         <name>b_278</name>
4825         <clade>
4826           <name>b_268</name>
4827           <clade>
4828             <name>b_226</name>
4829             <clade>
4830               <name>b_200</name>
4831               <clade>
4832                 <name>b_194</name>
4833                 <clade>
4834                   <name>b_104</name>
4835                   <clade>
4836                     <name>b_80</name>
4837                     <clade>
4838                       <taxonomy>
4839                         <id provider="uniprot">1224</id>
4840                         <scientific_name>Proteobacteria</scientific_name>
4841                         <rank>phylum</rank>
4842                       </taxonomy>
4843                       <clade>
4844                         <name>b_52</name>
4845                         <clade>
4846                           <name>b_44</name>
4847                           <clade>
4848                             <name>b_30</name>
4849                             <clade>
4850                               <name>b_24</name>
4851                               <taxonomy>
4852                                 <id provider="uniprot">1236</id>
4853                                 <scientific_name>Gammaproteobacteria</scientific_name>
4854                                 <rank>class</rank>
4855                               </taxonomy>
4856                               <clade>
4857                                 <name>b_16</name>
4858                                 <clade>
4859                                   <name>b_10</name>
4860                                   <taxonomy>
4861                                     <id provider="uniprot">543</id>
4862                                     <scientific_name>Enterobacteriaceae</scientific_name>
4863                                     <rank>family</rank>
4864                                   </taxonomy>
4865                                   <clade>
4866                                     <name>b_8</name>
4867                                     <clade>
4868                                       <name>b_6</name>
4869                                       <clade>
4870                                         <name>b_4</name>
4871                                         <clade>
4872                                           <name>b_2</name>
4873                                           <taxonomy>
4874                                             <id provider="uniprot">561</id>
4875                                             <scientific_name>Escherichia</scientific_name>
4876                                             <rank>genus</rank>
4877                                           </taxonomy>
4878                                           <clade>
4879                                             <name>ECOLI</name>
4880                                             <taxonomy>
4881                                               <id provider="uniprot">83333</id>
4882                                               <code>ECOLI</code>
4883                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
4884                                             </taxonomy>
4885                                           </clade>
4886                                           <clade>
4887                                             <name>ECO57</name>
4888                                             <taxonomy>
4889                                               <id provider="uniprot">83334</id>
4890                                               <code>ECO57</code>
4891                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
4892                                             </taxonomy>
4893                                           </clade>
4894                                         </clade>
4895                                         <clade>
4896                                           <name>SHIFL</name>
4897                                           <taxonomy>
4898                                             <id provider="uniprot">623</id>
4899                                             <code>SHIFL</code>
4900                                             <scientific_name>Shigella flexneri</scientific_name>
4901                                             <rank>species</rank>
4902                                           </taxonomy>
4903                                         </clade>
4904                                       </clade>
4905                                       <clade>
4906                                         <name>SALTY</name>
4907                                         <taxonomy>
4908                                           <id provider="uniprot">90371</id>
4909                                           <code>SALTY</code>
4910                                           <scientific_name>Salmonella typhimurium</scientific_name>
4911                                         </taxonomy>
4912                                       </clade>
4913                                     </clade>
4914                                     <clade>
4915                                       <name>YERPE</name>
4916                                       <taxonomy>
4917                                         <id provider="uniprot">632</id>
4918                                         <code>YERPE</code>
4919                                         <scientific_name>Yersinia pestis</scientific_name>
4920                                         <rank>species</rank>
4921                                       </taxonomy>
4922                                     </clade>
4923                                   </clade>
4924                                   <clade>
4925                                     <name>PHOLU</name>
4926                                     <taxonomy>
4927                                       <id provider="uniprot">29488</id>
4928                                       <code>PHOLU</code>
4929                                       <scientific_name>Photorhabdus luminescens</scientific_name>
4930                                       <synonym>Xenorhabdus luminescens</synonym>
4931                                       <rank>species</rank>
4932                                     </taxonomy>
4933                                   </clade>
4934                                 </clade>
4935                                 <clade>
4936                                   <name>b_15</name>
4937                                   <clade>
4938                                     <name>b_13</name>
4939                                     <taxonomy>
4940                                       <id provider="uniprot">641</id>
4941                                       <scientific_name>Vibrionaceae</scientific_name>
4942                                       <rank>family</rank>
4943                                     </taxonomy>
4944                                     <clade>
4945                                       <name>PHOPR</name>
4946                                       <taxonomy>
4947                                         <id provider="uniprot">74109</id>
4948                                         <code>PHOPR</code>
4949                                         <scientific_name>Photobacterium profundum</scientific_name>
4950                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
4951                                         <rank>species</rank>
4952                                       </taxonomy>
4953                                     </clade>
4954                                     <clade>
4955                                       <name>VIBCH</name>
4956                                       <taxonomy>
4957                                         <id provider="uniprot">666</id>
4958                                         <code>VIBCH</code>
4959                                         <scientific_name>Vibrio cholerae</scientific_name>
4960                                         <rank>species</rank>
4961                                       </taxonomy>
4962                                     </clade>
4963                                   </clade>
4964                                   <clade>
4965                                     <name>SHEDO</name>
4966                                     <taxonomy>
4967                                       <id provider="uniprot">318161</id>
4968                                       <code>SHEDO</code>
4969                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
4970                                     </taxonomy>
4971                                   </clade>
4972                                 </clade>
4973                               </clade>
4974                               <clade>
4975                                 <name>b_23</name>
4976                                 <clade>
4977                                   <name>b_21</name>
4978                                   <taxonomy>
4979                                     <id provider="uniprot">286</id>
4980                                     <scientific_name>Pseudomonas</scientific_name>
4981                                     <rank>genus</rank>
4982                                   </taxonomy>
4983                                   <clade>
4984                                     <name>b_19</name>
4985                                     <clade>
4986                                       <name>PSEF5</name>
4987                                       <taxonomy>
4988                                         <id provider="uniprot">220664</id>
4989                                         <code>PSEF5</code>
4990                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
4991                                       </taxonomy>
4992                                     </clade>
4993                                     <clade>
4994                                       <name>PSEPF</name>
4995                                       <taxonomy>
4996                                         <id provider="uniprot">205922</id>
4997                                         <code>PSEPF</code>
4998                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
4999                                       </taxonomy>
5000                                     </clade>
5001                                   </clade>
5002                                   <clade>
5003                                     <name>PSEAE</name>
5004                                     <taxonomy>
5005                                       <id provider="uniprot">287</id>
5006                                       <code>PSEAE</code>
5007                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
5008                                       <rank>species</rank>
5009                                     </taxonomy>
5010                                   </clade>
5011                                 </clade>
5012                                 <clade>
5013                                   <name>CHRSD</name>
5014                                   <taxonomy>
5015                                     <id provider="uniprot">290398</id>
5016                                     <code>CHRSD</code>
5017                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
5018                                   </taxonomy>
5019                                 </clade>
5020                               </clade>
5021                             </clade>
5022                             <clade>
5023                               <name>b_29</name>
5024                               <taxonomy>
5025                                 <id provider="uniprot">28216</id>
5026                                 <scientific_name>Betaproteobacteria</scientific_name>
5027                                 <rank>class</rank>
5028                               </taxonomy>
5029                               <clade>
5030                                 <name>DECAR</name>
5031                                 <taxonomy>
5032                                   <id provider="uniprot">159087</id>
5033                                   <code>DECAR</code>
5034                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
5035                                 </taxonomy>
5036                               </clade>
5037                               <clade>
5038                                 <name>RALME</name>
5039                                 <taxonomy>
5040                                   <id provider="uniprot">266264</id>
5041                                   <code>RALME</code>
5042                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
5043                                 </taxonomy>
5044                               </clade>
5045                             </clade>
5046                           </clade>
5047                           <clade>
5048                             <name>b_43</name>
5049                             <clade>
5050                               <name>b_41</name>
5051                               <clade>
5052                                 <name>b_35</name>
5053                                 <taxonomy>
5054                                   <id provider="uniprot">28216</id>
5055                                   <scientific_name>Betaproteobacteria</scientific_name>
5056                                   <rank>class</rank>
5057                                 </taxonomy>
5058                                 <clade>
5059                                   <name>b_33</name>
5060                                   <taxonomy>
5061                                     <id provider="uniprot">206379</id>
5062                                     <scientific_name>Nitrosomonadaceae</scientific_name>
5063                                     <rank>family</rank>
5064                                   </taxonomy>
5065                                   <clade>
5066                                     <name>NITEU</name>
5067                                     <taxonomy>
5068                                       <id provider="uniprot">915</id>
5069                                       <code>NITEU</code>
5070                                       <scientific_name>Nitrosomonas europaea</scientific_name>
5071                                       <rank>species</rank>
5072                                     </taxonomy>
5073                                   </clade>
5074                                   <clade>
5075                                     <name>NITMU</name>
5076                                     <taxonomy>
5077                                       <id provider="uniprot">323848</id>
5078                                       <code>NITMU</code>
5079                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
5080                                     </taxonomy>
5081                                   </clade>
5082                                 </clade>
5083                                 <clade>
5084                                   <name>THIDE</name>
5085                                   <taxonomy>
5086                                     <id provider="uniprot">36861</id>
5087                                     <code>THIDE</code>
5088                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
5089                                     <rank>species</rank>
5090                                   </taxonomy>
5091                                 </clade>
5092                               </clade>
5093                               <clade>
5094                                 <name>b_40</name>
5095                                 <taxonomy>
5096                                   <id provider="uniprot">135613</id>
5097                                   <scientific_name>Chromatiales</scientific_name>
5098                                   <rank>order</rank>
5099                                 </taxonomy>
5100                                 <clade>
5101                                   <name>b_38</name>
5102                                   <taxonomy>
5103                                     <id provider="uniprot">72276</id>
5104                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
5105                                     <common_name>purple sulfur bacteria</common_name>
5106                                     <rank>family</rank>
5107                                   </taxonomy>
5108                                   <clade>
5109                                     <name>ALHEH</name>
5110                                     <taxonomy>
5111                                       <id provider="uniprot">187272</id>
5112                                       <code>ALHEH</code>
5113                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
5114                                     </taxonomy>
5115                                   </clade>
5116                                   <clade>
5117                                     <name>HALHL</name>
5118                                     <taxonomy>
5119                                       <id provider="uniprot">349124</id>
5120                                       <code>HALHL</code>
5121                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
5122                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
5123                                     </taxonomy>
5124                                   </clade>
5125                                 </clade>
5126                                 <clade>
5127                                   <name>NITOC</name>
5128                                   <taxonomy>
5129                                     <id provider="uniprot">323261</id>
5130                                     <code>NITOC</code>
5131                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
5132                                   </taxonomy>
5133                                 </clade>
5134                               </clade>
5135                             </clade>
5136                             <clade>
5137                               <name>THICR</name>
5138                               <taxonomy>
5139                                 <id provider="uniprot">317025</id>
5140                                 <code>THICR</code>
5141                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
5142                               </taxonomy>
5143                             </clade>
5144                           </clade>
5145                         </clade>
5146                         <clade>
5147                           <name>b_51</name>
5148                           <taxonomy>
5149                             <id provider="uniprot">1236</id>
5150                             <scientific_name>Gammaproteobacteria</scientific_name>
5151                             <rank>class</rank>
5152                           </taxonomy>
5153                           <clade>
5154                             <name>b_47</name>
5155                             <clade>
5156                               <name>IDILO</name>
5157                               <taxonomy>
5158                                 <id provider="uniprot">135577</id>
5159                                 <code>IDILO</code>
5160                                 <scientific_name>Idiomarina loihiensis</scientific_name>
5161                                 <rank>species</rank>
5162                               </taxonomy>
5163                             </clade>
5164                             <clade>
5165                               <name>LEGPN</name>
5166                               <taxonomy>
5167                                 <id provider="uniprot">446</id>
5168                                 <code>LEGPN</code>
5169                                 <scientific_name>Legionella pneumophila</scientific_name>
5170                                 <rank>species</rank>
5171                               </taxonomy>
5172                             </clade>
5173                           </clade>
5174                           <clade>
5175                             <name>b_50</name>
5176                             <taxonomy>
5177                               <id provider="uniprot">32033</id>
5178                               <scientific_name>Xanthomonadaceae</scientific_name>
5179                               <rank>family</rank>
5180                             </taxonomy>
5181                             <clade>
5182                               <name>XANAC</name>
5183                               <taxonomy>
5184                                 <id provider="uniprot">92829</id>
5185                                 <code>XANAC</code>
5186                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
5187                                 <common_name>Citrus canker</common_name>
5188                               </taxonomy>
5189                             </clade>
5190                             <clade>
5191                               <name>XYLFT</name>
5192                               <taxonomy>
5193                                 <id provider="uniprot">183190</id>
5194                                 <code>XYLFT</code>
5195                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
5196                               </taxonomy>
5197                             </clade>
5198                           </clade>
5199                         </clade>
5200                       </clade>
5201                       <clade>
5202                         <name>b_71</name>
5203                         <taxonomy>
5204                           <id provider="uniprot">28211</id>
5205                           <scientific_name>Alphaproteobacteria</scientific_name>
5206                           <rank>class</rank>
5207                         </taxonomy>
5208                         <clade>
5209                           <name>b_67</name>
5210                           <clade>
5211                             <name>b_65</name>
5212                             <clade>
5213                               <name>b_61</name>
5214                               <taxonomy>
5215                                 <id provider="uniprot">356</id>
5216                                 <scientific_name>Rhizobiales</scientific_name>
5217                                 <rank>order</rank>
5218                               </taxonomy>
5219                               <clade>
5220                                 <name>b_57</name>
5221                                 <taxonomy>
5222                                   <id provider="uniprot">227290</id>
5223                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
5224                                 </taxonomy>
5225                                 <clade>
5226                                   <name>AGRT5</name>
5227                                   <taxonomy>
5228                                     <id provider="uniprot">176299</id>
5229                                     <code>AGRT5</code>
5230                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
5231                                   </taxonomy>
5232                                 </clade>
5233                                 <clade>
5234                                   <name>RHIEC</name>
5235                                   <taxonomy>
5236                                     <id provider="uniprot">347834</id>
5237                                     <code>RHIEC</code>
5238                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
5239                                   </taxonomy>
5240                                 </clade>
5241                               </clade>
5242                               <clade>
5243                                 <name>b_60</name>
5244                                 <taxonomy>
5245                                   <id provider="uniprot">41294</id>
5246                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
5247                                   <rank>family</rank>
5248                                 </taxonomy>
5249                                 <clade>
5250                                   <name>BRAJA</name>
5251                                   <taxonomy>
5252                                     <id provider="uniprot">375</id>
5253                                     <code>BRAJA</code>
5254                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
5255                                     <rank>species</rank>
5256                                   </taxonomy>
5257                                 </clade>
5258                                 <clade>
5259                                   <name>RHOPT</name>
5260                                   <taxonomy>
5261                                     <id provider="uniprot">395960</id>
5262                                     <code>RHOPT</code>
5263                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
5264                                   </taxonomy>
5265                                 </clade>
5266                               </clade>
5267                             </clade>
5268                             <clade>
5269                               <name>b_64</name>
5270                               <taxonomy>
5271                                 <id provider="uniprot">31989</id>
5272                                 <scientific_name>Rhodobacteraceae</scientific_name>
5273                                 <rank>family</rank>
5274                               </taxonomy>
5275                               <clade>
5276                                 <name>RHOS1</name>
5277                                 <taxonomy>
5278                                   <id provider="uniprot">349101</id>
5279                                   <code>RHOS1</code>
5280                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
5281                                 </taxonomy>
5282                               </clade>
5283                               <clade>
5284                                 <name>ROSDO</name>
5285                                 <taxonomy>
5286                                   <id provider="uniprot">375451</id>
5287                                   <code>ROSDO</code>
5288                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
5289                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
5290                                   <synonym>Roseobacter denitrificans</synonym>
5291                                 </taxonomy>
5292                               </clade>
5293                             </clade>
5294                           </clade>
5295                           <clade>
5296                             <name>CAUCR</name>
5297                             <taxonomy>
5298                               <id provider="uniprot">155892</id>
5299                               <code>CAUCR</code>
5300                               <scientific_name>Caulobacter crescentus</scientific_name>
5301                               <synonym>Caulobacter vibrioides</synonym>
5302                               <rank>species</rank>
5303                             </taxonomy>
5304                           </clade>
5305                         </clade>
5306                         <clade>
5307                           <name>b_70</name>
5308                           <taxonomy>
5309                             <id provider="uniprot">204441</id>
5310                             <scientific_name>Rhodospirillales</scientific_name>
5311                             <rank>order</rank>
5312                           </taxonomy>
5313                           <clade>
5314                             <name>ACICY</name>
5315                             <taxonomy>
5316                               <id provider="uniprot">524</id>
5317                               <code>ACICY</code>
5318                               <scientific_name>Acidiphilium cryptum</scientific_name>
5319                               <rank>species</rank>
5320                             </taxonomy>
5321                           </clade>
5322                           <clade>
5323                             <name>RHORU</name>
5324                             <taxonomy>
5325                               <id provider="uniprot">1085</id>
5326                               <code>RHORU</code>
5327                               <scientific_name>Rhodospirillum rubrum</scientific_name>
5328                               <rank>species</rank>
5329                             </taxonomy>
5330                           </clade>
5331                         </clade>
5332                       </clade>
5333                     </clade>
5334                     <clade>
5335                       <name>b_79</name>
5336                       <clade>
5337                         <name>b_77</name>
5338                         <taxonomy>
5339                           <id provider="uniprot">1224</id>
5340                           <scientific_name>Proteobacteria</scientific_name>
5341                           <rank>phylum</rank>
5342                         </taxonomy>
5343                         <clade>
5344                           <name>b_75</name>
5345                           <taxonomy>
5346                             <id provider="uniprot">712</id>
5347                             <scientific_name>Pasteurellaceae</scientific_name>
5348                             <rank>family</rank>
5349                           </taxonomy>
5350                           <clade>
5351                             <name>HAEIN</name>
5352                             <taxonomy>
5353                               <id provider="uniprot">727</id>
5354                               <code>HAEIN</code>
5355                               <scientific_name>Haemophilus influenzae</scientific_name>
5356                               <rank>species</rank>
5357                             </taxonomy>
5358                           </clade>
5359                           <clade>
5360                             <name>PASMU</name>
5361                             <taxonomy>
5362                               <id provider="uniprot">747</id>
5363                               <code>PASMU</code>
5364                               <scientific_name>Pasteurella multocida</scientific_name>
5365                               <rank>species</rank>
5366                             </taxonomy>
5367                           </clade>
5368                         </clade>
5369                         <clade>
5370                           <name>NEIME</name>
5371                           <taxonomy>
5372                             <id provider="uniprot">487</id>
5373                             <code>NEIME</code>
5374                             <scientific_name>Neisseria meningitidis</scientific_name>
5375                             <rank>species</rank>
5376                           </taxonomy>
5377                         </clade>
5378                       </clade>
5379                       <clade>
5380                         <name>ACIFE</name>
5381                         <taxonomy>
5382                           <id provider="uniprot">905</id>
5383                           <code>ACIFE</code>
5384                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5385                           <rank>species</rank>
5386                         </taxonomy>
5387                       </clade>
5388                     </clade>
5389                   </clade>
5390                   <clade>
5391                     <name>b_103</name>
5392                     <clade>
5393                       <name>b_91</name>
5394                       <taxonomy>
5395                         <id provider="uniprot">28221</id>
5396                         <scientific_name>Deltaproteobacteria</scientific_name>
5397                         <rank>class</rank>
5398                       </taxonomy>
5399                       <clade>
5400                         <name>b_87</name>
5401                         <clade>
5402                           <name>b_83</name>
5403                           <clade>
5404                             <name>DESPS</name>
5405                             <taxonomy>
5406                               <id provider="uniprot">84980</id>
5407                               <code>DESPS</code>
5408                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5409                               <rank>species</rank>
5410                             </taxonomy>
5411                           </clade>
5412                           <clade>
5413                             <name>DESDE</name>
5414                             <taxonomy>
5415                               <id provider="uniprot">876</id>
5416                               <code>DESDE</code>
5417                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5418                               <rank>species</rank>
5419                             </taxonomy>
5420                           </clade>
5421                         </clade>
5422                         <clade>
5423                           <name>SYNAS</name>
5424                           <taxonomy>
5425                             <id provider="uniprot">56780</id>
5426                             <code>SYNAS</code>
5427                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5428                           </taxonomy>
5429                         </clade>
5430                       </clade>
5431                       <clade>
5432                         <name>b_90</name>
5433                         <taxonomy>
5434                           <id provider="uniprot">28231</id>
5435                           <scientific_name>Geobacter</scientific_name>
5436                           <rank>genus</rank>
5437                         </taxonomy>
5438                         <clade>
5439                           <name>GEOME</name>
5440                           <taxonomy>
5441                             <id provider="uniprot">28232</id>
5442                             <code>GEOME</code>
5443                             <scientific_name>Geobacter metallireducens</scientific_name>
5444                             <rank>species</rank>
5445                           </taxonomy>
5446                         </clade>
5447                         <clade>
5448                           <name>GEOSL</name>
5449                           <taxonomy>
5450                             <id provider="uniprot">35554</id>
5451                             <code>GEOSL</code>
5452                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5453                             <rank>species</rank>
5454                           </taxonomy>
5455                         </clade>
5456                       </clade>
5457                     </clade>
5458                     <clade>
5459                       <name>b_102</name>
5460                       <clade>
5461                         <name>b_98</name>
5462                         <clade>
5463                           <name>b_94</name>
5464                           <taxonomy>
5465                             <id provider="uniprot">31</id>
5466                             <scientific_name>Myxococcaceae</scientific_name>
5467                             <rank>family</rank>
5468                           </taxonomy>
5469                           <clade>
5470                             <name>ANADE</name>
5471                             <taxonomy>
5472                               <id provider="uniprot">290397</id>
5473                               <code>ANADE</code>
5474                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5475                             </taxonomy>
5476                           </clade>
5477                           <clade>
5478                             <name>MYXXA</name>
5479                             <taxonomy>
5480                               <id provider="uniprot">34</id>
5481                               <code>MYXXA</code>
5482                               <scientific_name>Myxococcus xanthus</scientific_name>
5483                               <rank>species</rank>
5484                             </taxonomy>
5485                           </clade>
5486                         </clade>
5487                         <clade>
5488                           <name>b_97</name>
5489                           <taxonomy>
5490                             <id provider="uniprot">57723</id>
5491                             <scientific_name>Acidobacteria</scientific_name>
5492                             <rank>phylum</rank>
5493                           </taxonomy>
5494                           <clade>
5495                             <name>ACIBL</name>
5496                             <taxonomy>
5497                               <id provider="uniprot">204669</id>
5498                               <code>ACIBL</code>
5499                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5500                             </taxonomy>
5501                           </clade>
5502                           <clade>
5503                             <name>SOLUS</name>
5504                             <taxonomy>
5505                               <id provider="uniprot">332163</id>
5506                               <code>SOLUS</code>
5507                               <scientific_name>Solibacter usitatus</scientific_name>
5508                               <rank>species</rank>
5509                             </taxonomy>
5510                           </clade>
5511                         </clade>
5512                       </clade>
5513                       <clade>
5514                         <name>RHOBA</name>
5515                         <taxonomy>
5516                           <id provider="uniprot">265606</id>
5517                           <code>RHOBA</code>
5518                           <scientific_name>Rhodopirellula baltica</scientific_name>
5519                           <rank>species</rank>
5520                         </taxonomy>
5521                       </clade>
5522                     </clade>
5523                   </clade>
5524                 </clade>
5525                 <clade>
5526                   <name>b_193</name>
5527                   <clade>
5528                     <name>b_163</name>
5529                     <clade>
5530                       <name>b_133</name>
5531                       <clade>
5532                         <name>Chloroflexi &amp; Actinobacteria</name>
5533                         <clade>
5534                           <taxonomy>
5535                             <id provider="uniprot">200795</id>
5536                             <scientific_name>Chloroflexi</scientific_name>
5537                             <common_name>GNS bacteria</common_name>
5538                             <synonym>Thermomicrobia</synonym>
5539                             <rank>phylum</rank>
5540                           </taxonomy>
5541                           <clade>
5542                             <taxonomy>
5543                               <id provider="uniprot">32061</id>
5544                               <scientific_name>Chloroflexi (class)</scientific_name>
5545                               <synonym>Chloroflecales</synonym>
5546                               <synonym>Chloroflexus/Deinococcus group</synonym>
5547                               <rank>class</rank>
5548                             </taxonomy>
5549                             <clade>
5550                               <name>b_122</name>
5551                               <taxonomy>
5552                                 <id provider="uniprot">1106</id>
5553                                 <scientific_name>Chloroflexaceae</scientific_name>
5554                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5555                                 <rank>family</rank>
5556                               </taxonomy>
5557                               <clade>
5558                                 <name>CHLAU</name>
5559                                 <taxonomy>
5560                                   <id provider="uniprot">1108</id>
5561                                   <code>CHLAU</code>
5562                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5563                                   <rank>species</rank>
5564                                 </taxonomy>
5565                               </clade>
5566                               <clade>
5567                                 <taxonomy>
5568                                   <id provider="uniprot">383372</id>
5569                                   <code>ROSCS</code>
5570                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
5571                                   <rank>species</rank>
5572                                 </taxonomy>
5573                               </clade>
5574                             </clade>
5575                             <clade>
5576                               <name>HERAU</name>
5577                               <taxonomy>
5578                                 <id provider="uniprot">65</id>
5579                                 <code>HERAU</code>
5580                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
5581                                 <synonym>Herpetosiphon giganteus</synonym>
5582                                 <rank>species</rank>
5583                               </taxonomy>
5584                             </clade>
5585                           </clade>
5586                           <clade>
5587                             <taxonomy>
5588                               <id provider="uniprot">479434</id>
5589                               <code>SPHTD</code>
5590                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
5591                               <rank>strain</rank>
5592                             </taxonomy>
5593                           </clade>
5594                         </clade>
5595                         <clade>
5596                           <taxonomy>
5597                             <id provider="uniprot">201174</id>
5598                             <scientific_name>Actinobacteria</scientific_name>
5599                             <rank>phylum</rank>
5600                           </taxonomy>
5601                           <clade>
5602                             <taxonomy>
5603                               <id provider="uniprot">2037</id>
5604                               <scientific_name>Actinomycetales</scientific_name>
5605                               <rank>order</rank>
5606                             </taxonomy>
5607                             <clade>
5608                               <name>b_115</name>
5609                               <clade>
5610                                 <name>KINRD</name>
5611                                 <taxonomy>
5612                                   <id provider="uniprot">266940</id>
5613                                   <code>KINRD</code>
5614                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5615                                 </taxonomy>
5616                               </clade>
5617                               <clade>
5618                                 <name>KOCRD</name>
5619                                 <taxonomy>
5620                                   <id provider="uniprot">378753</id>
5621                                   <code>KOCRD</code>
5622                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
5623                                 </taxonomy>
5624                               </clade>
5625                               <clade>
5626                                 <name>STRCO</name>
5627                                 <taxonomy>
5628                                   <id provider="uniprot">1902</id>
5629                                   <code>STRCO</code>
5630                                   <scientific_name>Streptomyces coelicolor</scientific_name>
5631                                   <rank>species</rank>
5632                                 </taxonomy>
5633                               </clade>
5634                               <clade>
5635                                 <name>THEFY</name>
5636                                 <taxonomy>
5637                                   <id provider="uniprot">269800</id>
5638                                   <code>THEFY</code>
5639                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
5640                                 </taxonomy>
5641                               </clade>
5642                               <clade>
5643                                 <taxonomy>
5644                                   <id provider="uniprot">1032480</id>
5645                                   <code>MICPN</code>
5646                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5647                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5648                                   <rank>strain</rank>
5649                                 </taxonomy>
5650                               </clade>
5651                             </clade>
5652                             <clade>
5653                               <taxonomy>
5654                                 <id provider="uniprot">85007</id>
5655                                 <scientific_name>Corynebacterineae</scientific_name>
5656                                 <rank>suborder</rank>
5657                               </taxonomy>
5658                               <clade>
5659                                 <taxonomy>
5660                                   <id provider="uniprot">1763</id>
5661                                   <scientific_name>Mycobacterium</scientific_name>
5662                                   <rank>genus</rank>
5663                                 </taxonomy>
5664                                 <clade>
5665                                   <name>MYCLE</name>
5666                                   <taxonomy>
5667                                     <id provider="uniprot">1769</id>
5668                                     <code>MYCLE</code>
5669                                     <scientific_name>Mycobacterium leprae</scientific_name>
5670                                     <rank>species</rank>
5671                                   </taxonomy>
5672                                 </clade>
5673                                 <clade>
5674                                   <name>MYCTU</name>
5675                                   <taxonomy>
5676                                     <id provider="uniprot">1773</id>
5677                                     <code>MYCTU</code>
5678                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5679                                     <rank>species</rank>
5680                                   </taxonomy>
5681                                 </clade>
5682                               </clade>
5683                               <clade>
5684                                 <name>CORJK</name>
5685                                 <taxonomy>
5686                                   <id provider="uniprot">306537</id>
5687                                   <code>CORJK</code>
5688                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
5689                                 </taxonomy>
5690                               </clade>
5691                               <clade>
5692                                 <taxonomy>
5693                                   <id provider="uniprot">632772</id>
5694                                   <code>RHOOB</code>
5695                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5696                                   <rank>strain</rank>
5697                                 </taxonomy>
5698                               </clade>
5699                             </clade>
5700                           </clade>
5701                           <clade>
5702                             <name>RUBXD</name>
5703                             <taxonomy>
5704                               <id provider="uniprot">266117</id>
5705                               <code>RUBXD</code>
5706                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5707                             </taxonomy>
5708                           </clade>
5709                         </clade>
5710                       </clade>
5711                       <clade>
5712                         <name>b_132</name>
5713                         <taxonomy>
5714                           <id provider="uniprot">188787</id>
5715                           <scientific_name>Deinococci</scientific_name>
5716                           <rank>class</rank>
5717                         </taxonomy>
5718                         <clade>
5719                           <name>b_130</name>
5720                           <taxonomy>
5721                             <id provider="uniprot">1298</id>
5722                             <scientific_name>Deinococcus</scientific_name>
5723                             <rank>genus</rank>
5724                           </taxonomy>
5725                           <clade>
5726                             <name>DEIGD</name>
5727                             <taxonomy>
5728                               <id provider="uniprot">319795</id>
5729                               <code>DEIGD</code>
5730                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
5731                             </taxonomy>
5732                           </clade>
5733                           <clade>
5734                             <name>DEIRA</name>
5735                             <taxonomy>
5736                               <id provider="uniprot">1299</id>
5737                               <code>DEIRA</code>
5738                               <scientific_name>Deinococcus radiodurans</scientific_name>
5739                               <rank>species</rank>
5740                             </taxonomy>
5741                           </clade>
5742                         </clade>
5743                         <clade>
5744                           <name>THETH</name>
5745                           <taxonomy>
5746                             <id provider="uniprot">274</id>
5747                             <code>THETH</code>
5748                             <scientific_name>Thermus thermophilus</scientific_name>
5749                             <rank>species</rank>
5750                           </taxonomy>
5751                         </clade>
5752                       </clade>
5753                     </clade>
5754                     <clade>
5755                       <name>b_162</name>
5756                       <taxonomy>
5757                         <id provider="uniprot">1117</id>
5758                         <scientific_name>Cyanobacteria</scientific_name>
5759                         <rank>phylum</rank>
5760                       </taxonomy>
5761                       <clade>
5762                         <name>b_154</name>
5763                         <clade>
5764                           <name>b_152</name>
5765                           <clade>
5766                             <name>b_146</name>
5767                             <clade>
5768                               <name>b_144</name>
5769                               <clade>
5770                                 <name>b_142</name>
5771                                 <clade>
5772                                   <name>b_138</name>
5773                                   <taxonomy>
5774                                     <id provider="uniprot">1162</id>
5775                                     <scientific_name>Nostocaceae</scientific_name>
5776                                     <rank>family</rank>
5777                                   </taxonomy>
5778                                   <clade>
5779                                     <name>b_136</name>
5780                                     <clade>
5781                                       <name>ANAVA</name>
5782                                       <taxonomy>
5783                                         <id provider="uniprot">1172</id>
5784                                         <code>ANAVA</code>
5785                                         <scientific_name>Anabaena variabilis</scientific_name>
5786                                         <rank>species</rank>
5787                                       </taxonomy>
5788                                     </clade>
5789                                     <clade>
5790                                       <name>NOSS7</name>
5791                                       <taxonomy>
5792                                         <id provider="uniprot">28072</id>
5793                                         <code>NOSS7</code>
5794                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
5795                                         <rank>species</rank>
5796                                       </taxonomy>
5797                                     </clade>
5798                                   </clade>
5799                                   <clade>
5800                                     <name>NOSP7</name>
5801                                     <taxonomy>
5802                                       <id provider="uniprot">63737</id>
5803                                       <code>NOSP7</code>
5804                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
5805                                     </taxonomy>
5806                                   </clade>
5807                                 </clade>
5808                                 <clade>
5809                                   <name>ACAMR</name>
5810                                   <taxonomy>
5811                                     <id provider="uniprot">155978</id>
5812                                     <code>ACAMR</code>
5813                                     <scientific_name>Acaryochloris marina</scientific_name>
5814                                     <rank>species</rank>
5815                                   </taxonomy>
5816                                 </clade>
5817                               </clade>
5818                               <clade>
5819                                 <name>MICAN</name>
5820                                 <taxonomy>
5821                                   <id provider="uniprot">449447</id>
5822                                   <code>MICAN</code>
5823                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
5824                                 </taxonomy>
5825                               </clade>
5826                             </clade>
5827                             <clade>
5828                               <name>TRIER</name>
5829                               <taxonomy>
5830                                 <id provider="uniprot">1206</id>
5831                                 <code>TRIER</code>
5832                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
5833                                 <rank>species</rank>
5834                               </taxonomy>
5835                             </clade>
5836                           </clade>
5837                           <clade>
5838                             <name>b_149</name>
5839                             <taxonomy>
5840                               <id provider="uniprot">1118</id>
5841                               <scientific_name>Chroococcales</scientific_name>
5842                               <rank>order</rank>
5843                             </taxonomy>
5844                             <clade>
5845                               <name>SYNEL</name>
5846                               <taxonomy>
5847                                 <id provider="uniprot">32046</id>
5848                                 <code>SYNEL</code>
5849                                 <scientific_name>Synechococcus elongatus</scientific_name>
5850                                 <rank>species</rank>
5851                               </taxonomy>
5852                             </clade>
5853                             <clade>
5854                               <name>SYNY3</name>
5855                               <taxonomy>
5856                                 <id provider="uniprot">1148</id>
5857                                 <code>SYNY3</code>
5858                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
5859                                 <rank>species</rank>
5860                               </taxonomy>
5861                             </clade>
5862                           </clade>
5863                         </clade>
5864                         <clade>
5865                           <name>GLOVI</name>
5866                           <taxonomy>
5867                             <id provider="uniprot">33072</id>
5868                             <code>GLOVI</code>
5869                             <scientific_name>Gloeobacter violaceus</scientific_name>
5870                             <rank>species</rank>
5871                           </taxonomy>
5872                         </clade>
5873                       </clade>
5874                       <clade>
5875                         <name>b_161</name>
5876                         <clade>
5877                           <name>b_159</name>
5878                           <taxonomy>
5879                             <id provider="uniprot">1218</id>
5880                             <scientific_name>Prochlorococcus</scientific_name>
5881                             <rank>genus</rank>
5882                           </taxonomy>
5883                           <clade>
5884                             <name>b_157</name>
5885                             <clade>
5886                               <name>PROMA</name>
5887                               <taxonomy>
5888                                 <id provider="uniprot">1219</id>
5889                                 <code>PROMA</code>
5890                                 <scientific_name>Prochlorococcus marinus</scientific_name>
5891                                 <rank>species</rank>
5892                               </taxonomy>
5893                             </clade>
5894                             <clade>
5895                               <name>PROMP</name>
5896                               <taxonomy>
5897                                 <id provider="uniprot">59919</id>
5898                                 <code>PROMP</code>
5899                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
5900                               </taxonomy>
5901                             </clade>
5902                           </clade>
5903                           <clade>
5904                             <name>PROMM</name>
5905                             <taxonomy>
5906                               <id provider="uniprot">74547</id>
5907                               <code>PROMM</code>
5908                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
5909                             </taxonomy>
5910                           </clade>
5911                         </clade>
5912                         <clade>
5913                           <name>SYNS3</name>
5914                           <taxonomy>
5915                             <id provider="uniprot">64471</id>
5916                             <code>SYNS3</code>
5917                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
5918                             <rank>species</rank>
5919                           </taxonomy>
5920                         </clade>
5921                       </clade>
5922                     </clade>
5923                   </clade>
5924                   <clade>
5925                     <name>b_192</name>
5926                     <clade>
5927                       <name>b_190</name>
5928                       <clade>
5929                         <name>b_178</name>
5930                         <clade>
5931                           <name>b_176</name>
5932                           <taxonomy>
5933                             <id provider="uniprot">191412</id>
5934                             <scientific_name>Chlorobiaceae</scientific_name>
5935                             <rank>family</rank>
5936                           </taxonomy>
5937                           <clade>
5938                             <name>b_170</name>
5939                             <clade>
5940                               <name>b_166</name>
5941                               <clade>
5942                                 <name>CHLPB</name>
5943                                 <taxonomy>
5944                                   <id provider="uniprot">331678</id>
5945                                   <code>CHLPB</code>
5946                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
5947                                 </taxonomy>
5948                               </clade>
5949                               <clade>
5950                                 <name>PROAE</name>
5951                                 <taxonomy>
5952                                   <id provider="uniprot">1102</id>
5953                                   <code>PROAE</code>
5954                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
5955                                   <rank>species</rank>
5956                                 </taxonomy>
5957                               </clade>
5958                             </clade>
5959                             <clade>
5960                               <name>b_169</name>
5961                               <taxonomy>
5962                                 <id provider="uniprot">274493</id>
5963                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
5964                               </taxonomy>
5965                               <clade>
5966                                 <name>PELLU</name>
5967                                 <taxonomy>
5968                                   <id provider="uniprot">1100</id>
5969                                   <code>PELLU</code>
5970                                   <scientific_name>Pelodictyon luteolum</scientific_name>
5971                                   <rank>species</rank>
5972                                 </taxonomy>
5973                               </clade>
5974                               <clade>
5975                                 <name>PROVI</name>
5976                                 <taxonomy>
5977                                   <id provider="uniprot">290318</id>
5978                                   <code>PROVI</code>
5979                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
5980                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
5981                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
5982                                 </taxonomy>
5983                               </clade>
5984                             </clade>
5985                           </clade>
5986                           <clade>
5987                             <name>b_175</name>
5988                             <clade>
5989                               <name>b_173</name>
5990                               <taxonomy>
5991                                 <id provider="uniprot">256319</id>
5992                                 <scientific_name>Chlorobaculum</scientific_name>
5993                                 <rank>genus</rank>
5994                               </taxonomy>
5995                               <clade>
5996                                 <name>CHLP8</name>
5997                                 <taxonomy>
5998                                   <id provider="uniprot">517417</id>
5999                                   <code>CHLP8</code>
6000                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
6001                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
6002                                 </taxonomy>
6003                               </clade>
6004                               <clade>
6005                                 <name>CHLTE</name>
6006                                 <taxonomy>
6007                                   <id provider="uniprot">1097</id>
6008                                   <code>CHLTE</code>
6009                                   <scientific_name>Chlorobium tepidum</scientific_name>
6010                                   <rank>species</rank>
6011                                 </taxonomy>
6012                               </clade>
6013                             </clade>
6014                             <clade>
6015                               <name>CHLCH</name>
6016                               <taxonomy>
6017                                 <id provider="uniprot">340177</id>
6018                                 <code>CHLCH</code>
6019                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
6020                               </taxonomy>
6021                             </clade>
6022                           </clade>
6023                         </clade>
6024                         <clade>
6025                           <name>CHLTA</name>
6026                           <taxonomy>
6027                             <id provider="uniprot">315277</id>
6028                             <code>CHLTA</code>
6029                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
6030                           </taxonomy>
6031                         </clade>
6032                       </clade>
6033                       <clade>
6034                         <name>b_189</name>
6035                         <taxonomy>
6036                           <id provider="uniprot">976</id>
6037                           <scientific_name>Bacteroidetes</scientific_name>
6038                           <rank>phylum</rank>
6039                         </taxonomy>
6040                         <clade>
6041                           <name>b_183</name>
6042                           <clade>
6043                             <name>b_181</name>
6044                             <taxonomy>
6045                               <id provider="uniprot">49546</id>
6046                               <scientific_name>Flavobacteriaceae</scientific_name>
6047                               <rank>family</rank>
6048                             </taxonomy>
6049                             <clade>
6050                               <name>FLAJO</name>
6051                               <taxonomy>
6052                                 <id provider="uniprot">986</id>
6053                                 <code>FLAJO</code>
6054                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
6055                                 <synonym>Cytophaga johnsonae</synonym>
6056                                 <rank>species</rank>
6057                               </taxonomy>
6058                             </clade>
6059                             <clade>
6060                               <name>GRAFK</name>
6061                               <taxonomy>
6062                                 <id provider="uniprot">411154</id>
6063                                 <code>GRAFK</code>
6064                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
6065                               </taxonomy>
6066                             </clade>
6067                           </clade>
6068                           <clade>
6069                             <name>CYTH3</name>
6070                             <taxonomy>
6071                               <id provider="uniprot">269798</id>
6072                               <code>CYTH3</code>
6073                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
6074                             </taxonomy>
6075                           </clade>
6076                         </clade>
6077                         <clade>
6078                           <name>b_188</name>
6079                           <taxonomy>
6080                             <id provider="uniprot">171549</id>
6081                             <scientific_name>Bacteroidales</scientific_name>
6082                             <rank>order</rank>
6083                           </taxonomy>
6084                           <clade>
6085                             <name>b_186</name>
6086                             <taxonomy>
6087                               <id provider="uniprot">816</id>
6088                               <scientific_name>Bacteroides</scientific_name>
6089                               <rank>genus</rank>
6090                             </taxonomy>
6091                             <clade>
6092                               <name>BACFR</name>
6093                               <taxonomy>
6094                                 <id provider="uniprot">817</id>
6095                                 <code>BACFR</code>
6096                                 <scientific_name>Bacteroides fragilis</scientific_name>
6097                                 <rank>species</rank>
6098                               </taxonomy>
6099                             </clade>
6100                             <clade>
6101                               <name>BACTN</name>
6102                               <taxonomy>
6103                                 <id provider="uniprot">818</id>
6104                                 <code>BACTN</code>
6105                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
6106                                 <rank>species</rank>
6107                               </taxonomy>
6108                             </clade>
6109                           </clade>
6110                           <clade>
6111                             <name>PORGI</name>
6112                             <taxonomy>
6113                               <id provider="uniprot">837</id>
6114                               <code>PORGI</code>
6115                               <scientific_name>Porphyromonas gingivalis</scientific_name>
6116                               <synonym>Bacteroides gingivalis</synonym>
6117                               <rank>species</rank>
6118                             </taxonomy>
6119                           </clade>
6120                         </clade>
6121                       </clade>
6122                     </clade>
6123                     <clade>
6124                       <name>SALRD</name>
6125                       <taxonomy>
6126                         <id provider="uniprot">309807</id>
6127                         <code>SALRD</code>
6128                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
6129                       </taxonomy>
6130                     </clade>
6131                   </clade>
6132                 </clade>
6133               </clade>
6134               <clade>
6135                 <name>b_199</name>
6136                 <clade>
6137                   <name>b_197</name>
6138                   <taxonomy>
6139                     <scientific_name>Verrucomicrobia</scientific_name>
6140                   </taxonomy>
6141                   <clade>
6142                     <name>AKKM8</name>
6143                     <taxonomy>
6144                       <id provider="uniprot">349741</id>
6145                       <code>AKKM8</code>
6146                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
6147                     </taxonomy>
6148                   </clade>
6149                   <clade>
6150                     <name>METI4</name>
6151                     <taxonomy>
6152                       <id provider="uniprot">481448</id>
6153                       <code>METI4</code>
6154                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
6155                       <synonym>Methylokorus infernorum (strain V4)</synonym>
6156                     </taxonomy>
6157                   </clade>
6158                 </clade>
6159                 <clade>
6160                   <name>LEPIC</name>
6161                   <taxonomy>
6162                     <id provider="uniprot">44275</id>
6163                     <code>LEPIC</code>
6164                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
6165                   </taxonomy>
6166                 </clade>
6167               </clade>
6168             </clade>
6169             <clade>
6170               <name>b_225</name>
6171               <clade>
6172                 <name>b_219</name>
6173                 <taxonomy>
6174                   <id provider="uniprot">1239</id>
6175                   <scientific_name>Firmicutes</scientific_name>
6176                   <rank>phylum</rank>
6177                 </taxonomy>
6178                 <clade>
6179                   <name>b_213</name>
6180                   <clade>
6181                     <taxonomy>
6182                       <id provider="uniprot">1385</id>
6183                       <scientific_name>Bacillales</scientific_name>
6184                       <rank>order</rank>
6185                     </taxonomy>
6186                     <clade>
6187                       <taxonomy>
6188                         <id provider="uniprot">186817</id>
6189                         <scientific_name>Bacillaceae</scientific_name>
6190                         <rank>family</rank>
6191                       </taxonomy>
6192                       <clade>
6193                         <taxonomy>
6194                           <id provider="uniprot">1386</id>
6195                           <scientific_name>Bacillus</scientific_name>
6196                           <rank>genus</rank>
6197                         </taxonomy>
6198                         <clade>
6199                           <taxonomy>
6200                             <id provider="uniprot">86661</id>
6201                             <scientific_name>Bacillus cereus group</scientific_name>
6202                           </taxonomy>
6203                           <clade>
6204                             <name>BACAN</name>
6205                             <taxonomy>
6206                               <id provider="uniprot">1392</id>
6207                               <code>BACAN</code>
6208                               <scientific_name>Bacillus anthracis</scientific_name>
6209                               <rank>species</rank>
6210                             </taxonomy>
6211                           </clade>
6212                           <clade>
6213                             <taxonomy>
6214                               <id provider="uniprot">572264</id>
6215                               <code>BACC3</code>
6216                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
6217                               <rank>strain</rank>
6218                             </taxonomy>
6219                           </clade>
6220                         </clade>
6221                         <clade>
6222                           <taxonomy>
6223                             <id provider="uniprot">1423</id>
6224                             <code>BACSU</code>
6225                             <scientific_name>Bacillus subtilis</scientific_name>
6226                             <rank>species</rank>
6227                           </taxonomy>
6228                         </clade>
6229                       </clade>
6230                       <clade>
6231                         <name>b_206</name>
6232                         <clade>
6233                           <name>BACHD</name>
6234                           <taxonomy>
6235                             <id provider="uniprot">86665</id>
6236                             <code>BACHD</code>
6237                             <scientific_name>Bacillus halodurans</scientific_name>
6238                             <rank>species</rank>
6239                           </taxonomy>
6240                         </clade>
6241                         <clade>
6242                           <name>GEOKA</name>
6243                           <taxonomy>
6244                             <id provider="uniprot">1462</id>
6245                             <code>GEOKA</code>
6246                             <scientific_name>Geobacillus kaustophilus</scientific_name>
6247                             <rank>species</rank>
6248                           </taxonomy>
6249                         </clade>
6250                       </clade>
6251                     </clade>
6252                     <clade>
6253                       <name>b_210</name>
6254                       <clade>
6255                         <name>LISMO</name>
6256                         <taxonomy>
6257                           <id provider="uniprot">1639</id>
6258                           <code>LISMO</code>
6259                           <scientific_name>Listeria monocytogenes</scientific_name>
6260                           <rank>species</rank>
6261                         </taxonomy>
6262                       </clade>
6263                       <clade>
6264                         <name>STAAU</name>
6265                         <taxonomy>
6266                           <id provider="uniprot">1280</id>
6267                           <code>STAAU</code>
6268                           <scientific_name>Staphylococcus aureus</scientific_name>
6269                           <rank>species</rank>
6270                         </taxonomy>
6271                       </clade>
6272                     </clade>
6273                   </clade>
6274                   <clade>
6275                     <name>CLOP1</name>
6276                     <taxonomy>
6277                       <id provider="uniprot">195103</id>
6278                       <code>CLOP1</code>
6279                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
6280                     </taxonomy>
6281                   </clade>
6282                 </clade>
6283                 <clade>
6284                   <name>Clostridia</name>
6285                   <taxonomy>
6286                     <id provider="uniprot">186801</id>
6287                     <scientific_name>Clostridia</scientific_name>
6288                     <rank>class</rank>
6289                   </taxonomy>
6290                   <clade>
6291                     <name>b_218</name>
6292                     <clade>
6293                       <name>b_216</name>
6294                       <taxonomy>
6295                         <id provider="uniprot">186814</id>
6296                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
6297                         <rank>family</rank>
6298                       </taxonomy>
6299                       <clade>
6300                         <name>CARHZ</name>
6301                         <taxonomy>
6302                           <id provider="uniprot">246194</id>
6303                           <code>CARHZ</code>
6304                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
6305                         </taxonomy>
6306                       </clade>
6307                       <clade>
6308                         <name>THETN</name>
6309                         <taxonomy>
6310                           <id provider="uniprot">119072</id>
6311                           <code>THETN</code>
6312                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
6313                           <rank>species</rank>
6314                         </taxonomy>
6315                       </clade>
6316                     </clade>
6317                     <clade>
6318                       <name>DESHA</name>
6319                       <taxonomy>
6320                         <id provider="uniprot">49338</id>
6321                         <code>DESHA</code>
6322                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
6323                         <synonym>Desulfitobacterium frappieri</synonym>
6324                         <rank>species</rank>
6325                       </taxonomy>
6326                     </clade>
6327                   </clade>
6328                   <clade>
6329                     <name>EUBR3</name>
6330                     <taxonomy>
6331                       <id provider="uniprot">515619</id>
6332                       <code>EUBR3</code>
6333                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
6334                     </taxonomy>
6335                   </clade>
6336                 </clade>
6337               </clade>
6338               <clade>
6339                 <name>b_224</name>
6340                 <taxonomy>
6341                   <id provider="uniprot">188709</id>
6342                   <scientific_name>Thermotogaceae</scientific_name>
6343                   <rank>family</rank>
6344                 </taxonomy>
6345                 <clade>
6346                   <name>b_222</name>
6347                   <clade>
6348                     <name>FERNB</name>
6349                     <taxonomy>
6350                       <id provider="uniprot">381764</id>
6351                       <code>FERNB</code>
6352                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
6353                     </taxonomy>
6354                   </clade>
6355                   <clade>
6356                     <name>THELT</name>
6357                     <taxonomy>
6358                       <id provider="uniprot">416591</id>
6359                       <code>THELT</code>
6360                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
6361                     </taxonomy>
6362                   </clade>
6363                 </clade>
6364                 <clade>
6365                   <name>THEMA</name>
6366                   <taxonomy>
6367                     <id provider="uniprot">2336</id>
6368                     <code>THEMA</code>
6369                     <scientific_name>Thermotoga maritima</scientific_name>
6370                     <rank>species</rank>
6371                   </taxonomy>
6372                 </clade>
6373               </clade>
6374             </clade>
6375           </clade>
6376           <clade>
6377             <name>b_267</name>
6378             <clade>
6379               <name>b_263</name>
6380               <clade>
6381                 <name>b_251</name>
6382                 <clade>
6383                   <name>b_249</name>
6384                   <clade>
6385                     <name>b_245</name>
6386                     <clade>
6387                       <name>b_237</name>
6388                       <clade>
6389                         <name>b_233</name>
6390                         <taxonomy>
6391                           <id provider="uniprot">31969</id>
6392                           <scientific_name>Mollicutes</scientific_name>
6393                           <rank>class</rank>
6394                         </taxonomy>
6395                         <clade>
6396                           <name>b_231</name>
6397                           <clade>
6398                             <name>b_229</name>
6399                             <taxonomy>
6400                               <scientific_name>Mycoplasma</scientific_name>
6401                             </taxonomy>
6402                             <clade>
6403                               <name>MYCGE</name>
6404                               <taxonomy>
6405                                 <id provider="uniprot">2097</id>
6406                                 <code>MYCGE</code>
6407                                 <scientific_name>Mycoplasma genitalium</scientific_name>
6408                                 <rank>species</rank>
6409                               </taxonomy>
6410                             </clade>
6411                             <clade>
6412                               <name>MYCPN</name>
6413                               <taxonomy>
6414                                 <id provider="uniprot">2104</id>
6415                                 <code>MYCPN</code>
6416                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
6417                                 <rank>species</rank>
6418                               </taxonomy>
6419                             </clade>
6420                           </clade>
6421                           <clade>
6422                             <name>MESFL</name>
6423                             <taxonomy>
6424                               <id provider="uniprot">2151</id>
6425                               <code>MESFL</code>
6426                               <scientific_name>Mesoplasma florum</scientific_name>
6427                               <synonym>Acholeplasma florum</synonym>
6428                               <rank>species</rank>
6429                             </taxonomy>
6430                           </clade>
6431                         </clade>
6432                         <clade>
6433                           <name>UREPA</name>
6434                           <taxonomy>
6435                             <id provider="uniprot">134821</id>
6436                             <code>UREPA</code>
6437                             <scientific_name>Ureaplasma parvum</scientific_name>
6438                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
6439                             <rank>species</rank>
6440                           </taxonomy>
6441                         </clade>
6442                       </clade>
6443                       <clade>
6444                         <name>b_236</name>
6445                         <taxonomy>
6446                           <id provider="uniprot">137</id>
6447                           <scientific_name>Spirochaetaceae</scientific_name>
6448                           <rank>family</rank>
6449                         </taxonomy>
6450                         <clade>
6451                           <name>BORBU</name>
6452                           <taxonomy>
6453                             <id provider="uniprot">139</id>
6454                             <code>BORBU</code>
6455                             <scientific_name>Borrelia burgdorferi</scientific_name>
6456                             <common_name>Lyme disease spirochete</common_name>
6457                             <rank>species</rank>
6458                           </taxonomy>
6459                         </clade>
6460                         <clade>
6461                           <name>TREPA</name>
6462                           <taxonomy>
6463                             <id provider="uniprot">160</id>
6464                             <code>TREPA</code>
6465                             <scientific_name>Treponema pallidum</scientific_name>
6466                             <rank>species</rank>
6467                           </taxonomy>
6468                         </clade>
6469                       </clade>
6470                     </clade>
6471                     <clade>
6472                       <name>b_244</name>
6473                       <clade>
6474                         <name>b_242</name>
6475                         <taxonomy>
6476                           <id provider="uniprot">1113537</id>
6477                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6478                         </taxonomy>
6479                         <clade>
6480                           <name>b_240</name>
6481                           <clade>
6482                             <name>CHLPN</name>
6483                             <taxonomy>
6484                               <id provider="uniprot">83558</id>
6485                               <code>CHLPN</code>
6486                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6487                               <synonym>Chlamydophila pneumoniae</synonym>
6488                               <rank>species</rank>
6489                             </taxonomy>
6490                           </clade>
6491                           <clade>
6492                             <name>CHLFF</name>
6493                             <taxonomy>
6494                               <id provider="uniprot">264202</id>
6495                               <code>CHLFF</code>
6496                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6497                             </taxonomy>
6498                           </clade>
6499                         </clade>
6500                         <clade>
6501                           <name>CHLMU</name>
6502                           <taxonomy>
6503                             <id provider="uniprot">83560</id>
6504                             <code>CHLMU</code>
6505                             <scientific_name>Chlamydia muridarum</scientific_name>
6506                             <rank>species</rank>
6507                           </taxonomy>
6508                         </clade>
6509                       </clade>
6510                       <clade>
6511                         <name>RICTY</name>
6512                         <taxonomy>
6513                           <id provider="uniprot">785</id>
6514                           <code>RICTY</code>
6515                           <scientific_name>Rickettsia typhi</scientific_name>
6516                           <rank>species</rank>
6517                         </taxonomy>
6518                       </clade>
6519                     </clade>
6520                   </clade>
6521                   <clade>
6522                     <taxonomy>
6523                       <id provider="uniprot">28211</id>
6524                       <scientific_name>Alphaproteobacteria</scientific_name>
6525                       <rank>class</rank>
6526                     </taxonomy>
6527                     <clade>
6528                       <taxonomy>
6529                         <id provider="uniprot">38323</id>
6530                         <code>BARHE</code>
6531                         <scientific_name>Bartonella henselae</scientific_name>
6532                         <synonym>Rochalimaea henselae</synonym>
6533                         <rank>species</rank>
6534                       </taxonomy>
6535                     </clade>
6536                     <clade>
6537                       <taxonomy>
6538                         <id provider="uniprot">198252</id>
6539                         <code>PELUB</code>
6540                         <scientific_name>Pelagibacter ubique</scientific_name>
6541                         <rank>species</rank>
6542                       </taxonomy>
6543                     </clade>
6544                     <clade>
6545                       <taxonomy>
6546                         <id provider="uniprot">780</id>
6547                         <scientific_name>Rickettsia</scientific_name>
6548                         <rank>genus</rank>
6549                       </taxonomy>
6550                       <clade>
6551                         <taxonomy>
6552                           <id provider="uniprot">452659</id>
6553                           <code>RICRO</code>
6554                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6555                           <rank>strain</rank>
6556                         </taxonomy>
6557                       </clade>
6558                       <clade>
6559                         <taxonomy>
6560                           <id provider="uniprot">391896</id>
6561                           <code>RICB8</code>
6562                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6563                         </taxonomy>
6564                       </clade>
6565                     </clade>
6566                   </clade>
6567                 </clade>
6568                 <clade>
6569                   <name>FRATU</name>
6570                   <taxonomy>
6571                     <id provider="uniprot">263</id>
6572                     <code>FRATU</code>
6573                     <scientific_name>Francisella tularensis</scientific_name>
6574                     <rank>species</rank>
6575                   </taxonomy>
6576                 </clade>
6577               </clade>
6578               <clade>
6579                 <name>b_262</name>
6580                 <clade>
6581                   <name>b_260</name>
6582                   <clade>
6583                     <name>b_258</name>
6584                     <taxonomy>
6585                       <id provider="uniprot">186826</id>
6586                       <scientific_name>Lactobacillales</scientific_name>
6587                       <rank>order</rank>
6588                     </taxonomy>
6589                     <clade>
6590                       <name>b_256</name>
6591                       <taxonomy>
6592                         <id provider="uniprot">1300</id>
6593                         <scientific_name>Streptococcaceae</scientific_name>
6594                         <rank>family</rank>
6595                       </taxonomy>
6596                       <clade>
6597                         <name>b_254</name>
6598                         <taxonomy>
6599                           <id provider="uniprot">1301</id>
6600                           <scientific_name>Streptococcus</scientific_name>
6601                           <rank>genus</rank>
6602                         </taxonomy>
6603                         <clade>
6604                           <name>STRPN</name>
6605                           <taxonomy>
6606                             <id provider="uniprot">1313</id>
6607                             <code>STRPN</code>
6608                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6609                             <rank>species</rank>
6610                           </taxonomy>
6611                         </clade>
6612                         <clade>
6613                           <name>STRPY</name>
6614                           <taxonomy>
6615                             <id provider="uniprot">1314</id>
6616                             <code>STRPY</code>
6617                             <scientific_name>Streptococcus pyogenes</scientific_name>
6618                             <rank>species</rank>
6619                           </taxonomy>
6620                         </clade>
6621                       </clade>
6622                       <clade>
6623                         <name>LACLA</name>
6624                         <taxonomy>
6625                           <id provider="uniprot">1360</id>
6626                           <code>LACLA</code>
6627                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6628                           <synonym>Streptococcus lactis</synonym>
6629                           <rank>subspecies</rank>
6630                         </taxonomy>
6631                       </clade>
6632                     </clade>
6633                     <clade>
6634                       <name>LACAC</name>
6635                       <taxonomy>
6636                         <id provider="uniprot">1579</id>
6637                         <code>LACAC</code>
6638                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6639                         <rank>species</rank>
6640                       </taxonomy>
6641                     </clade>
6642                   </clade>
6643                   <clade>
6644                     <name>BIFLO</name>
6645                     <taxonomy>
6646                       <id provider="uniprot">216816</id>
6647                       <code>BIFLO</code>
6648                       <scientific_name>Bifidobacterium longum</scientific_name>
6649                       <rank>species</rank>
6650                     </taxonomy>
6651                   </clade>
6652                 </clade>
6653                 <clade>
6654                   <name>FUSNU</name>
6655                   <taxonomy>
6656                     <id provider="uniprot">851</id>
6657                     <code>FUSNU</code>
6658                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6659                     <rank>species</rank>
6660                   </taxonomy>
6661                 </clade>
6662               </clade>
6663             </clade>
6664             <clade>
6665               <name>b_266</name>
6666               <taxonomy>
6667                 <id provider="uniprot">61434</id>
6668                 <scientific_name>Dehalococcoides</scientific_name>
6669                 <rank>genus</rank>
6670               </taxonomy>
6671               <clade>
6672                 <name>DEHE1</name>
6673                 <taxonomy>
6674                   <id provider="uniprot">243164</id>
6675                   <code>DEHE1</code>
6676                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6677                 </taxonomy>
6678               </clade>
6679               <clade>
6680                 <name>DEHSB</name>
6681                 <taxonomy>
6682                   <id provider="uniprot">216389</id>
6683                   <code>DEHSB</code>
6684                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6685                   <rank>species</rank>
6686                 </taxonomy>
6687               </clade>
6688             </clade>
6689           </clade>
6690         </clade>
6691         <clade>
6692           <name>b_277</name>
6693           <taxonomy>
6694             <id provider="uniprot">29547</id>
6695             <scientific_name>Epsilonproteobacteria</scientific_name>
6696             <rank>class</rank>
6697           </taxonomy>
6698           <clade>
6699             <name>b_273</name>
6700             <clade>
6701               <name>NITSB</name>
6702               <taxonomy>
6703                 <id provider="uniprot">387092</id>
6704                 <code>NITSB</code>
6705                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6706                 <rank>species</rank>
6707               </taxonomy>
6708             </clade>
6709             <clade>
6710               <name>SULNB</name>
6711               <taxonomy>
6712                 <id provider="uniprot">387093</id>
6713                 <code>SULNB</code>
6714                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6715                 <rank>species</rank>
6716               </taxonomy>
6717             </clade>
6718           </clade>
6719           <clade>
6720             <name>b_276</name>
6721             <taxonomy>
6722               <id provider="uniprot">213849</id>
6723               <scientific_name>Campylobacterales</scientific_name>
6724               <rank>order</rank>
6725             </taxonomy>
6726             <clade>
6727               <name>CAMJE</name>
6728               <taxonomy>
6729                 <id provider="uniprot">197</id>
6730                 <code>CAMJE</code>
6731                 <scientific_name>Campylobacter jejuni</scientific_name>
6732                 <rank>species</rank>
6733               </taxonomy>
6734             </clade>
6735             <clade>
6736               <name>HELPH</name>
6737               <taxonomy>
6738                 <id provider="uniprot">357544</id>
6739                 <code>HELPH</code>
6740                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6741               </taxonomy>
6742             </clade>
6743           </clade>
6744         </clade>
6745       </clade>
6746       <clade>
6747         <name>AQUAE</name>
6748         <taxonomy>
6749           <id provider="uniprot">63363</id>
6750           <code>AQUAE</code>
6751           <scientific_name>Aquifex aeolicus</scientific_name>
6752           <rank>species</rank>
6753         </taxonomy>
6754       </clade>
6755     </clade>
6756   </clade>
6757 </phylogeny>
6758 </phyloxml>