forester/test_data/species.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <name>Opisthokonta &amp; Apusozoa</name>
  20             <clade>
  21               <taxonomy>
  22                 <id provider="uniprot">33154</id>
  23                 <scientific_name>Opisthokonta</scientific_name>
  24                 <common_name>Fungi/Metazoa group</common_name>
  25               </taxonomy>
  26               <clade>
  27                 <taxonomy>
  28                   <scientific_name>Holozoa</scientific_name>
  29                 </taxonomy>
  30                 <clade>
  31                   <name>Choanoflagellatea &amp; Metazoa</name>
  32                   <clade>
  33                     <name>Metazoa</name>
  34                     <taxonomy>
  35                       <id provider="uniprot">33208</id>
  36                       <scientific_name>Metazoa</scientific_name>
  37                       <rank>kingdom</rank>
  38                     </taxonomy>
  39                     <clade>
  40                       <name>Eumetazoa</name>
  41                       <reference doi="10.1038/nature06614">
  42                       </reference>
  43                       <clade>
  44                         <name>Bilateria_Cnidaria</name>
  45                         <clade>
  46                           <name>Bilateria</name>
  47                           <clade>
  48                             <name>Deuterostomia</name>
  49                             <reference doi="10.1038/nature04336">
  50                             </reference>
  51                             <clade>
  52                               <name>Chordata</name>
  53                               <taxonomy>
  54                                 <id provider="uniprot">7711</id>
  55                                 <scientific_name>Chordata</scientific_name>
  56                                 <rank>phylum</rank>
  57                               </taxonomy>
  58                               <clade>
  59                                 <name>Urochordata &amp; Vertebrata</name>
  60                                 <clade>
  61                                   <taxonomy>
  62                                     <id provider="uniprot">7742</id>
  63                                     <scientific_name>Vertebrata</scientific_name>
  64                                   </taxonomy>
  65                                   <clade>
  66                                     <taxonomy>
  67                                       <id provider="uniprot">7776</id>
  68                                       <scientific_name>Gnathostomata</scientific_name>
  69                                       <common_name>jawed vertebrates</common_name>
  70                                       <rank>superclass</rank>
  71                                     </taxonomy>
  72                                     <clade>
  73                                       <taxonomy>
  74                                         <id provider="uniprot">117571</id>
  75                                         <scientific_name>Euteleostomi</scientific_name>
  76                                       </taxonomy>
  77                                       <clade>
  78                                         <name>Tetrapoda</name>
  79                                         <clade>
  80                                           <name>Amniota</name>
  81                                           <clade>
  82                                             <taxonomy>
  83                                               <id provider="uniprot">40674</id>
  84                                               <scientific_name>Mammalia</scientific_name>
  85                                               <rank>class</rank>
  86                                             </taxonomy>
  87                                             <clade>
  88                                               <name>Theria</name>
  89                                               <clade>
  90                                                 <taxonomy>
  91                                                   <id provider="uniprot">9347</id>
  92                                                   <scientific_name>Eutheria</scientific_name>
  93                                                   <common_name>Placental mammals</common_name>
  94                                                 </taxonomy>
  95                                                 <reference doi="10.1002/bies.200900053">
  96                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  97                                                 </reference>
  98                                                 <clade>
  99                                                   <taxonomy>
 100                                                     <scientific_name>Boreoeutheria</scientific_name>
 101                                                     <synonym>Boreotheria</synonym>
 102                                                   </taxonomy>
 103                                                   <clade>
 104                                                     <taxonomy>
 105                                                       <id provider="uniprot">314146</id>
 106                                                       <scientific_name>Euarchontoglires</scientific_name>
 107                                                       <rank>superorder</rank>
 108                                                     </taxonomy>
 109                                                     <clade>
 110                                                       <taxonomy>
 111                                                         <scientific_name>Euarchonta</scientific_name>
 112                                                       </taxonomy>
 113                                                       <clade>
 114                                                         <taxonomy>
 115                                                           <id provider="uniprot">9443</id>
 116                                                           <scientific_name>Primates</scientific_name>
 117                                                           <rank>order</rank>
 118                                                         </taxonomy>
 119                                                         <clade>
 120                                                           <taxonomy>
 121                                                             <id provider="uniprot">376913</id>
 122                                                             <scientific_name>Haplorrhini</scientific_name>
 123                                                             <rank>suborder</rank>
 124                                                           </taxonomy>
 125                                                           <clade>
 126                                                             <taxonomy>
 127                                                               <id provider="uniprot">314293</id>
 128                                                               <scientific_name>Simiiformes</scientific_name>
 129                                                               <rank>infraorder</rank>
 130                                                             </taxonomy>
 131                                                             <clade>
 132                                                               <taxonomy>
 133                                                                 <id provider="uniprot">9526</id>
 134                                                                 <scientific_name>Catarrhini</scientific_name>
 135                                                               </taxonomy>
 136                                                               <clade>
 137                                                                 <taxonomy>
 138                                                                   <id provider="uniprot">314295</id>
 139                                                                   <scientific_name>Hominoidea</scientific_name>
 140                                                                   <common_name>Apes</common_name>
 141                                                                   <rank>superfamily</rank>
 142                                                                 </taxonomy>
 143                                                                 <clade>
 144                                                                   <taxonomy>
 145                                                                     <id provider="uniprot">9604</id>
 146                                                                     <scientific_name>Hominidae</scientific_name>
 147                                                                     <common_name>Great apes</common_name>
 148                                                                     <rank>family</rank>
 149                                                                   </taxonomy>
 150                                                                   <clade>
 151                                                                     <taxonomy>
 152                                                                       <id provider="uniprot">207598</id>
 153                                                                       <scientific_name>Homininae</scientific_name>
 154                                                                       <rank>subfamily</rank>
 155                                                                     </taxonomy>
 156                                                                     <clade>
 157                                                                       <taxonomy>
 158                                                                         <scientific_name>Hominini</scientific_name>
 159                                                                         <rank>tribe</rank>
 160                                                                       </taxonomy>
 161                                                                       <clade>
 162                                                                         <taxonomy>
 163                                                                           <id provider="uniprot">9606</id>
 164                                                                           <code>HUMAN</code>
 165                                                                           <scientific_name>Homo sapiens</scientific_name>
 166                                                                           <common_name>Human</common_name>
 167                                                                           <rank>species</rank>
 168                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 169                                                                         </taxonomy>
 170                                                                       </clade>
 171                                                                       <clade>
 172                                                                         <taxonomy>
 173                                                                           <id provider="uniprot">9598</id>
 174                                                                           <code>PANTR</code>
 175                                                                           <scientific_name>Pan troglodytes</scientific_name>
 176                                                                           <common_name>Chimpanzee</common_name>
 177                                                                           <rank>species</rank>
 178                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 179                                                                         </taxonomy>
 180                                                                       </clade>
 181                                                                     </clade>
 182                                                                     <clade>
 183                                                                       <taxonomy>
 184                                                                         <id provider="uniprot">9595</id>
 185                                                                         <code>GORGO</code>
 186                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 187                                                                         <common_name>Western lowland gorilla</common_name>
 188                                                                         <rank>subspecies</rank>
 189                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 190                                                                       </taxonomy>
 191                                                                     </clade>
 192                                                                   </clade>
 193                                                                   <clade>
 194                                                                     <taxonomy>
 195                                                                       <id provider="uniprot">9601</id>
 196                                                                       <code>PONAB</code>
 197                                                                       <scientific_name>Pongo abelii</scientific_name>
 198                                                                       <common_name>Sumatran orangutan</common_name>
 199                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 200                                                                       <rank>species</rank>
 201                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 202                                                                     </taxonomy>
 203                                                                   </clade>
 204                                                                 </clade>
 205                                                                 <clade>
 206                                                                   <taxonomy>
 207                                                                     <id provider="uniprot">61853</id>
 208                                                                     <code>NOMLE</code>
 209                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 210                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 211                                                                     <synonym>Hylobates leucogenys</synonym>
 212                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 213                                                                     <rank>species</rank>
 214                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 215                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 216                                                                   </taxonomy>
 217                                                                 </clade>
 218                                                               </clade>
 219                                                               <clade>
 220                                                                 <taxonomy>
 221                                                                   <id provider="uniprot">9528</id>
 222                                                                   <scientific_name>Cercopithecinae</scientific_name>
 223                                                                   <rank>subfamily</rank>
 224                                                                 </taxonomy>
 225                                                                 <clade>
 226                                                                   <taxonomy>
 227                                                                     <id provider="uniprot">9544</id>
 228                                                                     <code>MACMU</code>
 229                                                                     <scientific_name>Macaca mulatta</scientific_name>
 230                                                                     <common_name>Rhesus macaque</common_name>
 231                                                                     <rank>species</rank>
 232                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 233                                                                   </taxonomy>
 234                                                                 </clade>
 235                                                                 <clade>
 236                                                                   <taxonomy>
 237                                                                     <id provider="uniprot">9557</id>
 238                                                                     <code>PAPHA</code>
 239                                                                     <scientific_name>Papio hamadryas</scientific_name>
 240                                                                     <common_name>Hamadryas baboon</common_name>
 241                                                                     <rank>species</rank>
 242                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 243                                                                   </taxonomy>
 244                                                                 </clade>
 245                                                               </clade>
 246                                                             </clade>
 247                                                             <clade>
 248                                                               <taxonomy>
 249                                                                 <id provider="uniprot">9483</id>
 250                                                                 <code>CALJA</code>
 251                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 252                                                                 <common_name>White-tufted-ear marmoset</common_name>
 253                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 254                                                                 <rank>species</rank>
 255                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 256                                                               </taxonomy>
 257                                                             </clade>
 258                                                           </clade>
 259                                                           <clade>
 260                                                             <taxonomy>
 261                                                               <id provider="uniprot">9478</id>
 262                                                               <code>TARSY</code>
 263                                                               <scientific_name>Tarsius syrichta</scientific_name>
 264                                                               <common_name>Philippine tarsier</common_name>
 265                                                               <rank>species</rank>
 266                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 267                                                             </taxonomy>
 268                                                           </clade>
 269                                                         </clade>
 270                                                         <clade>
 271                                                           <taxonomy>
 272                                                             <id provider="uniprot">376911</id>
 273                                                             <scientific_name>Strepsirrhini</scientific_name>
 274                                                             <rank>suborder</rank>
 275                                                           </taxonomy>
 276                                                           <clade>
 277                                                             <taxonomy>
 278                                                               <id provider="uniprot">30608</id>
 279                                                               <code>MICMU</code>
 280                                                               <scientific_name>Microcebus murinus</scientific_name>
 281                                                               <common_name>Lesser mouse lemur</common_name>
 282                                                               <rank>species</rank>
 283                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 284                                                             </taxonomy>
 285                                                           </clade>
 286                                                           <clade>
 287                                                             <taxonomy>
 288                                                               <id provider="uniprot">30611</id>
 289                                                               <code>OTOGA</code>
 290                                                               <scientific_name>Otolemur garnettii</scientific_name>
 291                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 292                                                               <synonym>Galago garnetti</synonym>
 293                                                               <synonym>Small-eared galago</synonym>
 294                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 295                                                               <rank>species</rank>
 296                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 297                                                             </taxonomy>
 298                                                           </clade>
 299                                                         </clade>
 300                                                       </clade>
 301                                                       <clade>
 302                                                         <taxonomy>
 303                                                           <id provider="uniprot">37347</id>
 304                                                           <code>TUPBE</code>
 305                                                           <scientific_name>Tupaia belangeri</scientific_name>
 306                                                           <common_name>Common tree shrew</common_name>
 307                                                           <synonym>Tupaia glis belangeri</synonym>
 308                                                           <rank>species</rank>
 309                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 310                                                         </taxonomy>
 311                                                       </clade>
 312                                                     </clade>
 313                                                     <clade>
 314                                                       <taxonomy>
 315                                                         <id provider="uniprot">314147</id>
 316                                                         <scientific_name>Glires</scientific_name>
 317                                                         <common_name>Rodents and rabbits</common_name>
 318                                                       </taxonomy>
 319                                                       <clade>
 320                                                         <taxonomy>
 321                                                           <id provider="uniprot">9989</id>
 322                                                           <scientific_name>Rodentia</scientific_name>
 323                                                           <rank>order</rank>
 324                                                         </taxonomy>
 325                                                         <clade>
 326                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 327                                                           <reference doi="10.1186/1471-2148-9-71">
 328                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 329                                                           </reference>
 330                                                           <clade>
 331                                                             <taxonomy>
 332                                                               <common_name>Mouse-related clade</common_name>
 333                                                             </taxonomy>
 334                                                             <clade>
 335                                                               <taxonomy>
 336                                                                 <id provider="uniprot">337687</id>
 337                                                                 <scientific_name>Muroidea</scientific_name>
 338                                                               </taxonomy>
 339                                                               <clade>
 340                                                                 <taxonomy>
 341                                                                   <id provider="uniprot">39107</id>
 342                                                                   <scientific_name>Murinae</scientific_name>
 343                                                                   <rank>subfamily</rank>
 344                                                                 </taxonomy>
 345                                                                 <clade>
 346                                                                   <taxonomy>
 347                                                                     <id provider="uniprot">10090</id>
 348                                                                     <code>MOUSE</code>
 349                                                                     <scientific_name>Mus musculus</scientific_name>
 350                                                                     <common_name>Mouse</common_name>
 351                                                                     <rank>species</rank>
 352                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 353                                                                   </taxonomy>
 354                                                                 </clade>
 355                                                                 <clade>
 356                                                                   <taxonomy>
 357                                                                     <id provider="uniprot">10116</id>
 358                                                                     <code>RAT</code>
 359                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 360                                                                     <common_name>Rat</common_name>
 361                                                                     <rank>species</rank>
 362                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 363                                                                   </taxonomy>
 364                                                                 </clade>
 365                                                               </clade>
 366                                                               <clade>
 367                                                                 <taxonomy>
 368                                                                   <id provider="uniprot">10036</id>
 369                                                                   <code>MESAU</code>
 370                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 371                                                                   <common_name>Golden hamster</common_name>
 372                                                                   <rank>species</rank>
 373                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 374                                                                 </taxonomy>
 375                                                               </clade>
 376                                                             </clade>
 377                                                             <clade>
 378                                                               <taxonomy>
 379                                                                 <id provider="uniprot">10020</id>
 380                                                                 <code>DIPOR</code>
 381                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 382                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 383                                                                 <rank>species</rank>
 384                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 385                                                               </taxonomy>
 386                                                             </clade>
 387                                                           </clade>
 388                                                           <clade>
 389                                                             <taxonomy>
 390                                                               <id provider="uniprot">10141</id>
 391                                                               <code>CAVPO</code>
 392                                                               <scientific_name>Cavia porcellus</scientific_name>
 393                                                               <common_name>Guinea pig</common_name>
 394                                                               <rank>species</rank>
 395                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 396                                                             </taxonomy>
 397                                                           </clade>
 398                                                         </clade>
 399                                                         <clade>
 400                                                           <taxonomy>
 401                                                             <id provider="uniprot">43179</id>
 402                                                             <code>SPETR</code>
 403                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 404                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 405                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 406                                                             <rank>species</rank>
 407                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 408                                                           </taxonomy>
 409                                                         </clade>
 410                                                       </clade>
 411                                                       <clade>
 412                                                         <taxonomy>
 413                                                           <id provider="uniprot">9975</id>
 414                                                           <scientific_name>Lagomorpha</scientific_name>
 415                                                           <common_name>Rabbits, hares, pikas</common_name>
 416                                                           <rank>order</rank>
 417                                                         </taxonomy>
 418                                                         <clade>
 419                                                           <taxonomy>
 420                                                             <id provider="uniprot">9978</id>
 421                                                             <code>OCHPR</code>
 422                                                             <scientific_name>Ochotona princeps</scientific_name>
 423                                                             <common_name>Southern American pika</common_name>
 424                                                             <rank>species</rank>
 425                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 426                                                           </taxonomy>
 427                                                         </clade>
 428                                                         <clade>
 429                                                           <taxonomy>
 430                                                             <id provider="uniprot">9986</id>
 431                                                             <code>RABIT</code>
 432                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 433                                                             <common_name>Rabbit</common_name>
 434                                                             <rank>species</rank>
 435                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 436                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 437                                                           </taxonomy>
 438                                                         </clade>
 439                                                       </clade>
 440                                                     </clade>
 441                                                   </clade>
 442                                                   <clade>
 443                                                     <taxonomy>
 444                                                       <id provider="uniprot">314145</id>
 445                                                       <scientific_name>Laurasiatheria</scientific_name>
 446                                                       <rank>superorder</rank>
 447                                                     </taxonomy>
 448                                                     <clade>
 449                                                       <taxonomy>
 450                                                         <scientific_name>Scrotifera</scientific_name>
 451                                                       </taxonomy>
 452                                                       <clade>
 453                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 454                                                         <clade>
 455                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 456                                                           <clade>
 457                                                             <taxonomy>
 458                                                               <id provider="uniprot">91561</id>
 459                                                               <scientific_name>Cetartiodactyla</scientific_name>
 460                                                               <common_name>Even-toed ungulates</common_name>
 461                                                             </taxonomy>
 462                                                             <clade>
 463                                                               <name>Cetruminantia &amp; Suina</name>
 464                                                               <clade>
 465                                                                 <taxonomy>
 466                                                                   <scientific_name>Cetruminantia</scientific_name>
 467                                                                 </taxonomy>
 468                                                                 <clade>
 469                                                                   <taxonomy>
 470                                                                     <id provider="uniprot">9895</id>
 471                                                                     <scientific_name>Bovidae</scientific_name>
 472                                                                     <rank>family</rank>
 473                                                                   </taxonomy>
 474                                                                   <clade>
 475                                                                     <taxonomy>
 476                                                                       <id provider="uniprot">9913</id>
 477                                                                       <code>BOVIN</code>
 478                                                                       <scientific_name>Bos taurus</scientific_name>
 479                                                                       <common_name>Bovine</common_name>
 480                                                                       <synonym>Bos bovis</synonym>
 481                                                                       <rank>species</rank>
 482                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 483                                                                     </taxonomy>
 484                                                                   </clade>
 485                                                                   <clade>
 486                                                                     <taxonomy>
 487                                                                       <id provider="uniprot">9940</id>
 488                                                                       <code>SHEEP</code>
 489                                                                       <scientific_name>Ovis aries</scientific_name>
 490                                                                       <common_name>Sheep</common_name>
 491                                                                       <rank>species</rank>
 492                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 493                                                                     </taxonomy>
 494                                                                   </clade>
 495                                                                 </clade>
 496                                                                 <clade>
 497                                                                   <taxonomy>
 498                                                                     <id provider="uniprot">9721</id>
 499                                                                     <scientific_name>Cetacea</scientific_name>
 500                                                                     <common_name>Whales</common_name>
 501                                                                     <rank>order</rank>
 502                                                                   </taxonomy>
 503                                                                   <clade>
 504                                                                     <taxonomy>
 505                                                                       <id provider="uniprot">9771</id>
 506                                                                       <code>BALMU</code>
 507                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 508                                                                       <common_name>Blue whale</common_name>
 509                                                                       <rank>species</rank>
 510                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 511                                                                     </taxonomy>
 512                                                                   </clade>
 513                                                                   <clade>
 514                                                                     <taxonomy>
 515                                                                       <id provider="uniprot">9739</id>
 516                                                                       <code>TURTR</code>
 517                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 518                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 519                                                                       <synonym>Delphinus truncatus</synonym>
 520                                                                       <rank>species</rank>
 521                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 522                                                                     </taxonomy>
 523                                                                   </clade>
 524                                                                 </clade>
 525                                                               </clade>
 526                                                               <clade>
 527                                                                 <taxonomy>
 528                                                                   <id provider="uniprot">9823</id>
 529                                                                   <code>PIG</code>
 530                                                                   <scientific_name>Sus scrofa</scientific_name>
 531                                                                   <common_name>Pig</common_name>
 532                                                                   <rank>species</rank>
 533                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 534                                                                 </taxonomy>
 535                                                               </clade>
 536                                                             </clade>
 537                                                             <clade>
 538                                                               <taxonomy>
 539                                                                 <id provider="uniprot">30538</id>
 540                                                                 <code>LAMPA</code>
 541                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 542                                                                 <common_name>Alpaca</common_name>
 543                                                                 <synonym>Lama pacos</synonym>
 544                                                                 <rank>species</rank>
 545                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 546                                                               </taxonomy>
 547                                                             </clade>
 548                                                           </clade>
 549                                                           <clade>
 550                                                             <taxonomy>
 551                                                               <id provider="uniprot">9796</id>
 552                                                               <code>HORSE</code>
 553                                                               <scientific_name>Equus caballus</scientific_name>
 554                                                               <common_name>Horse</common_name>
 555                                                               <rank>species</rank>
 556                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 557                                                             </taxonomy>
 558                                                           </clade>
 559                                                         </clade>
 560                                                         <clade>
 561                                                           <taxonomy>
 562                                                             <id provider="uniprot">9397</id>
 563                                                             <scientific_name>Chiroptera</scientific_name>
 564                                                             <common_name>Bats</common_name>
 565                                                             <rank>order</rank>
 566                                                           </taxonomy>
 567                                                           <clade>
 568                                                             <taxonomy>
 569                                                               <id provider="uniprot">59463</id>
 570                                                               <code>MYOLU</code>
 571                                                               <scientific_name>Myotis lucifugus</scientific_name>
 572                                                               <common_name>Little brown bat</common_name>
 573                                                               <rank>species</rank>
 574                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 575                                                             </taxonomy>
 576                                                           </clade>
 577                                                           <clade>
 578                                                             <taxonomy>
 579                                                               <id provider="uniprot">132908</id>
 580                                                               <code>PTEVA</code>
 581                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 582                                                               <common_name>Large flying fox</common_name>
 583                                                               <rank>species</rank>
 584                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 585                                                             </taxonomy>
 586                                                           </clade>
 587                                                         </clade>
 588                                                       </clade>
 589                                                       <clade>
 590                                                         <name>Carnivora</name>
 591                                                         <taxonomy>
 592                                                           <id provider="uniprot">33554</id>
 593                                                           <scientific_name>Carnivora</scientific_name>
 594                                                           <rank>order</rank>
 595                                                         </taxonomy>
 596                                                         <clade>
 597                                                           <taxonomy>
 598                                                             <id provider="uniprot">379584</id>
 599                                                             <scientific_name>Caniformia</scientific_name>
 600                                                             <rank>suborder</rank>
 601                                                           </taxonomy>
 602                                                           <clade>
 603                                                             <taxonomy>
 604                                                               <id provider="uniprot">9646</id>
 605                                                               <code>AILME</code>
 606                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 607                                                               <common_name>Giant panda</common_name>
 608                                                               <rank>species</rank>
 609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 610                                                             </taxonomy>
 611                                                           </clade>
 612                                                           <clade>
 613                                                             <taxonomy>
 614                                                               <id provider="uniprot">9615</id>
 615                                                               <code>CANFA</code>
 616                                                               <scientific_name>Canis familiaris</scientific_name>
 617                                                               <common_name>Dog</common_name>
 618                                                               <synonym>Canis lupus familiaris</synonym>
 619                                                               <rank>subspecies</rank>
 620                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 621                                                             </taxonomy>
 622                                                           </clade>
 623                                                         </clade>
 624                                                         <clade>
 625                                                           <taxonomy>
 626                                                             <id provider="uniprot">9685</id>
 627                                                             <code>FELCA</code>
 628                                                             <scientific_name>Felis catus</scientific_name>
 629                                                             <common_name>Cat</common_name>
 630                                                             <synonym>Felis silvestris catus</synonym>
 631                                                             <rank>species</rank>
 632                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 633                                                           </taxonomy>
 634                                                         </clade>
 635                                                       </clade>
 636                                                     </clade>
 637                                                     <clade>
 638                                                       <taxonomy>
 639                                                         <id provider="uniprot">9362</id>
 640                                                         <scientific_name>Insectivora</scientific_name>
 641                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 642                                                         <rank>order</rank>
 643                                                       </taxonomy>
 644                                                       <clade>
 645                                                         <taxonomy>
 646                                                           <id provider="uniprot">9365</id>
 647                                                           <code>ERIEU</code>
 648                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 649                                                           <common_name>Western European hedgehog</common_name>
 650                                                           <rank>species</rank>
 651                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 652                                                         </taxonomy>
 653                                                       </clade>
 654                                                       <clade>
 655                                                         <taxonomy>
 656                                                           <id provider="uniprot">42254</id>
 657                                                           <code>SORAR</code>
 658                                                           <scientific_name>Sorex araneus</scientific_name>
 659                                                           <common_name>Eurasian common shrew</common_name>
 660                                                           <synonym>European shrew</synonym>
 661                                                           <rank>species</rank>
 662                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 663                                                         </taxonomy>
 664                                                       </clade>
 665                                                     </clade>
 666                                                   </clade>
 667                                                 </clade>
 668                                                 <clade>
 669                                                   <taxonomy>
 670                                                     <scientific_name>Atlantogenata</scientific_name>
 671                                                   </taxonomy>
 672                                                   <clade>
 673                                                     <taxonomy>
 674                                                       <id provider="uniprot">311790</id>
 675                                                       <scientific_name>Afrotheria</scientific_name>
 676                                                       <rank>superorder</rank>
 677                                                     </taxonomy>
 678                                                     <clade>
 679                                                       <taxonomy>
 680                                                         <scientific_name>Paenungulata</scientific_name>
 681                                                       </taxonomy>
 682                                                       <clade>
 683                                                         <taxonomy>
 684                                                           <id provider="uniprot">9785</id>
 685                                                           <code>LOXAF</code>
 686                                                           <scientific_name>Loxodonta africana</scientific_name>
 687                                                           <common_name>African savanna elephant</common_name>
 688                                                           <rank>species</rank>
 689                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 690                                                         </taxonomy>
 691                                                       </clade>
 692                                                       <clade>
 693                                                         <taxonomy>
 694                                                           <id provider="uniprot">9813</id>
 695                                                           <code>PROCA</code>
 696                                                           <scientific_name>Procavia capensis</scientific_name>
 697                                                           <common_name>Cape hyrax</common_name>
 698                                                           <synonym>Rock dassie</synonym>
 699                                                           <rank>species</rank>
 700                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 701                                                         </taxonomy>
 702                                                       </clade>
 703                                                     </clade>
 704                                                     <clade>
 705                                                       <taxonomy>
 706                                                         <id provider="uniprot">9371</id>
 707                                                         <code>ECHTE</code>
 708                                                         <scientific_name>Echinops telfairi</scientific_name>
 709                                                         <common_name>Lesser hedgehog tenrec</common_name>
 710                                                         <rank>species</rank>
 711                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 712                                                       </taxonomy>
 713                                                     </clade>
 714                                                   </clade>
 715                                                   <clade>
 716                                                     <taxonomy>
 717                                                       <id provider="uniprot">9348</id>
 718                                                       <scientific_name>Xenarthra</scientific_name>
 719                                                       <synonym>Edentata</synonym>
 720                                                       <rank>superorder</rank>
 721                                                     </taxonomy>
 722                                                     <clade>
 723                                                       <taxonomy>
 724                                                         <id provider="uniprot">9358</id>
 725                                                         <code>CHOHO</code>
 726                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 727                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 728                                                         <rank>species</rank>
 729                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 730                                                       </taxonomy>
 731                                                     </clade>
 732                                                     <clade>
 733                                                       <taxonomy>
 734                                                         <id provider="uniprot">9361</id>
 735                                                         <code>DASNO</code>
 736                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 737                                                         <common_name>Nine-banded armadillo</common_name>
 738                                                         <rank>species</rank>
 739                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 740                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 741                                                       </taxonomy>
 742                                                     </clade>
 743                                                   </clade>
 744                                                 </clade>
 745                                               </clade>
 746                                               <clade>
 747                                                 <taxonomy>
 748                                                   <id provider="uniprot">9263</id>
 749                                                   <scientific_name>Metatheria</scientific_name>
 750                                                   <common_name>Marsupials</common_name>
 751                                                 </taxonomy>
 752                                                 <distribution>
 753                                                   <point geodetic_datum="?" alt_unit="?">
 754                                                     <lat>0</lat>
 755                                                     <long>0</long>
 756                                                     <alt>0</alt>
 757                                                   </point>
 758                                                 </distribution>
 759                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 760                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 761                                                 </reference>
 762                                                 <reference>
 763                                                 </reference>
 764                                                 <clade>
 765                                                   <taxonomy>
 766                                                     <scientific_name>Eometatheria</scientific_name>
 767                                                   </taxonomy>
 768                                                   <clade>
 769                                                     <taxonomy>
 770                                                       <id provider="uniprot">9315</id>
 771                                                       <code>MACEU</code>
 772                                                       <scientific_name>Macropus eugenii</scientific_name>
 773                                                       <common_name>Tammar wallaby</common_name>
 774                                                       <rank>species</rank>
 775                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 776                                                     </taxonomy>
 777                                                   </clade>
 778                                                   <clade>
 779                                                     <taxonomy>
 780                                                       <id provider="uniprot">9305</id>
 781                                                       <code>SARHA</code>
 782                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 783                                                       <common_name>Tasmanian devil</common_name>
 784                                                       <synonym>Sarcophilus laniarius</synonym>
 785                                                       <rank>species</rank>
 786                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 787                                                     </taxonomy>
 788                                                   </clade>
 789                                                 </clade>
 790                                                 <clade>
 791                                                   <taxonomy>
 792                                                     <id provider="uniprot">13616</id>
 793                                                     <code>MONDO</code>
 794                                                     <scientific_name>Monodelphis domestica</scientific_name>
 795                                                     <common_name>Short-tailed gray opossum</common_name>
 796                                                     <rank>species</rank>
 797                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 798                                                   </taxonomy>
 799                                                 </clade>
 800                                               </clade>
 801                                             </clade>
 802                                             <clade>
 803                                               <taxonomy>
 804                                                 <id provider="uniprot">9258</id>
 805                                                 <code>ORNAN</code>
 806                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 807                                                 <common_name>Duckbill platypus</common_name>
 808                                                 <rank>species</rank>
 809                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 810                                               </taxonomy>
 811                                             </clade>
 812                                           </clade>
 813                                           <clade>
 814                                             <name>Diapsida</name>
 815                                             <clade>
 816                                               <name>Neognathae</name>
 817                                               <taxonomy>
 818                                                 <id provider="uniprot">8825</id>
 819                                                 <scientific_name>Neognathae</scientific_name>
 820                                                 <rank>superorder</rank>
 821                                               </taxonomy>
 822                                               <clade>
 823                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 824                                                 <clade>
 825                                                   <taxonomy>
 826                                                     <id provider="uniprot">9005</id>
 827                                                     <scientific_name>Phasianidae</scientific_name>
 828                                                     <rank>family</rank>
 829                                                   </taxonomy>
 830                                                   <clade>
 831                                                     <taxonomy>
 832                                                       <id provider="uniprot">9031</id>
 833                                                       <code>CHICK</code>
 834                                                       <scientific_name>Gallus gallus</scientific_name>
 835                                                       <common_name>Chicken</common_name>
 836                                                       <synonym>Gallus domesticus</synonym>
 837                                                       <rank>species</rank>
 838                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 839                                                     </taxonomy>
 840                                                   </clade>
 841                                                   <clade>
 842                                                     <taxonomy>
 843                                                       <id provider="uniprot">9103</id>
 844                                                       <code>MELGA</code>
 845                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 846                                                       <common_name>Common turkey</common_name>
 847                                                       <rank>species</rank>
 848                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 849                                                     </taxonomy>
 850                                                   </clade>
 851                                                 </clade>
 852                                                 <clade>
 853                                                   <taxonomy>
 854                                                     <id provider="uniprot">8839</id>
 855                                                     <code>ANAPL</code>
 856                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 857                                                     <common_name>Domestic duck</common_name>
 858                                                     <synonym>Anas boschas</synonym>
 859                                                     <rank>species</rank>
 860                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 861                                                   </taxonomy>
 862                                                 </clade>
 863                                               </clade>
 864                                               <clade>
 865                                                 <taxonomy>
 866                                                   <id provider="uniprot">59729</id>
 867                                                   <code>TAEGU</code>
 868                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 869                                                   <common_name>Zebra finch</common_name>
 870                                                   <synonym>Poephila guttata</synonym>
 871                                                   <rank>species</rank>
 872                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 873                                                 </taxonomy>
 874                                               </clade>
 875                                             </clade>
 876                                             <clade>
 877                                               <taxonomy>
 878                                                 <id provider="eol">795869</id>
 879                                                 <code>ANOCA</code>
 880                                                 <scientific_name>Anolis carolinensis</scientific_name>
 881                                                 <authority>Voigt, 1832</authority>
 882                                                 <common_name>Green anole</common_name>
 883                                                 <synonym>American chameleon</synonym>
 884                                                 <rank>species</rank>
 885                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 886                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 887                                               </taxonomy>
 888                                             </clade>
 889                                           </clade>
 890                                         </clade>
 891                                         <clade>
 892                                           <taxonomy>
 893                                             <id provider="uniprot">8364</id>
 894                                             <code>XENTR</code>
 895                                             <scientific_name>Xenopus tropicalis</scientific_name>
 896                                             <common_name>Western clawed frog</common_name>
 897                                             <synonym>Silurana tropicalis</synonym>
 898                                             <rank>species</rank>
 899                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 900                                           </taxonomy>
 901                                         </clade>
 902                                       </clade>
 903                                       <clade>
 904                                         <name>Teleostei</name>
 905                                         <taxonomy>
 906                                           <id provider="uniprot">32443</id>
 907                                           <scientific_name>Teleostei</scientific_name>
 908                                         </taxonomy>
 909                                         <clade>
 910                                           <taxonomy>
 911                                             <id provider="uniprot">123368</id>
 912                                             <scientific_name>Acanthomorpha</scientific_name>
 913                                           </taxonomy>
 914                                           <clade>
 915                                             <taxonomy>
 916                                               <id provider="uniprot">32485</id>
 917                                               <scientific_name>Percomorpha</scientific_name>
 918                                             </taxonomy>
 919                                             <clade>
 920                                               <name>Smegmamorpha</name>
 921                                               <clade>
 922                                                 <taxonomy>
 923                                                   <id provider="uniprot">69293</id>
 924                                                   <code>GASAC</code>
 925                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 926                                                   <common_name>Three-spined stickleback</common_name>
 927                                                   <rank>species</rank>
 928                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 929                                                 </taxonomy>
 930                                               </clade>
 931                                               <clade>
 932                                                 <taxonomy>
 933                                                   <id provider="uniprot">8090</id>
 934                                                   <code>ORYLA</code>
 935                                                   <scientific_name>Oryzias latipes</scientific_name>
 936                                                   <common_name>Medaka fish</common_name>
 937                                                   <synonym>Japanese ricefish</synonym>
 938                                                   <rank>species</rank>
 939                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 940                                                 </taxonomy>
 941                                               </clade>
 942                                             </clade>
 943                                             <clade>
 944                                               <taxonomy>
 945                                                 <id provider="uniprot">31031</id>
 946                                                 <scientific_name>Tetraodontidae</scientific_name>
 947                                                 <common_name>puffers</common_name>
 948                                                 <rank>family</rank>
 949                                               </taxonomy>
 950                                               <clade>
 951                                                 <taxonomy>
 952                                                   <id provider="uniprot">31033</id>
 953                                                   <code>FUGRU</code>
 954                                                   <scientific_name>Takifugu rubripes</scientific_name>
 955                                                   <common_name>Japanese pufferfish</common_name>
 956                                                   <synonym>Fugu rubripes</synonym>
 957                                                   <rank>species</rank>
 958                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 959                                                 </taxonomy>
 960                                               </clade>
 961                                               <clade>
 962                                                 <taxonomy>
 963                                                   <id provider="uniprot">99883</id>
 964                                                   <code>TETNG</code>
 965                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 966                                                   <common_name>Green puffer</common_name>
 967                                                   <synonym>Chelonodon nigroviridis</synonym>
 968                                                   <rank>species</rank>
 969                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 970                                                 </taxonomy>
 971                                               </clade>
 972                                             </clade>
 973                                           </clade>
 974                                           <clade>
 975                                             <taxonomy>
 976                                               <id provider="uniprot">8049</id>
 977                                               <code>GADMO</code>
 978                                               <scientific_name>Gadus morhua</scientific_name>
 979                                               <common_name>Atlantic cod</common_name>
 980                                               <rank>species</rank>
 981                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
 982                                             </taxonomy>
 983                                           </clade>
 984                                         </clade>
 985                                         <clade>
 986                                           <taxonomy>
 987                                             <id provider="uniprot">7955</id>
 988                                             <code>DANRE</code>
 989                                             <scientific_name>Danio rerio</scientific_name>
 990                                             <common_name>Zebrafish</common_name>
 991                                             <synonym>Brachydanio rerio</synonym>
 992                                             <rank>species</rank>
 993                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
 994                                           </taxonomy>
 995                                         </clade>
 996                                       </clade>
 997                                     </clade>
 998                                     <clade>
 999                                       <taxonomy>
1000                                         <id provider="uniprot">7868</id>
1001                                         <code>CALMI</code>
1002                                         <scientific_name>Callorhynchus milii</scientific_name>
1003                                         <common_name>Australian ghost shark</common_name>
1004                                         <synonym>Australian ghost shark</synonym>
1005                                         <rank>species</rank>
1006                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1007                                       </taxonomy>
1008                                     </clade>
1009                                   </clade>
1010                                   <clade>
1011                                     <taxonomy>
1012                                       <id provider="uniprot">7757</id>
1013                                       <code>PETMA</code>
1014                                       <scientific_name>Petromyzon marinus</scientific_name>
1015                                       <common_name>Sea lamprey</common_name>
1016                                       <rank>species</rank>
1017                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1018                                     </taxonomy>
1019                                   </clade>
1020                                 </clade>
1021                                 <clade>
1022                                   <name>Urochordata</name>
1023                                   <taxonomy>
1024                                     <id provider="uniprot">7712</id>
1025                                     <scientific_name>Urochordata</scientific_name>
1026                                     <rank>subphylum</rank>
1027                                   </taxonomy>
1028                                   <clade>
1029                                     <taxonomy>
1030                                       <id provider="uniprot">7718</id>
1031                                       <scientific_name>Ciona</scientific_name>
1032                                       <rank>genus</rank>
1033                                     </taxonomy>
1034                                     <clade>
1035                                       <taxonomy>
1036                                         <id provider="uniprot">7719</id>
1037                                         <code>CIOIN</code>
1038                                         <scientific_name>Ciona intestinalis</scientific_name>
1039                                         <common_name>Transparent sea squirt</common_name>
1040                                         <synonym>Ascidia intestinalis</synonym>
1041                                         <rank>species</rank>
1042                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1043                                       </taxonomy>
1044                                     </clade>
1045                                     <clade>
1046                                       <taxonomy>
1047                                         <id provider="uniprot">51511</id>
1048                                         <code>CIOSA</code>
1049                                         <scientific_name>Ciona savignyi</scientific_name>
1050                                         <common_name>Pacific transparent sea squirt</common_name>
1051                                         <rank>species</rank>
1052                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1053                                       </taxonomy>
1054                                     </clade>
1055                                   </clade>
1056                                   <clade>
1057                                     <taxonomy>
1058                                       <id provider="ncbi">34765</id>
1059                                       <code>OIKDI</code>
1060                                       <scientific_name>Oikopleura dioica</scientific_name>
1061                                       <common_name>Tunicate</common_name>
1062                                       <rank>species</rank>
1063                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1064                                     </taxonomy>
1065                                   </clade>
1066                                 </clade>
1067                               </clade>
1068                               <clade>
1069                                 <taxonomy>
1070                                   <id provider="uniprot">7739</id>
1071                                   <code>BRAFL</code>
1072                                   <scientific_name>Branchiostoma floridae</scientific_name>
1073                                   <common_name>Florida lancelet</common_name>
1074                                   <synonym>Amphioxus</synonym>
1075                                   <rank>species</rank>
1076                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1077                                 </taxonomy>
1078                               </clade>
1079                             </clade>
1080                             <clade>
1081                               <name>Hemichordata &amp; Echinodermata</name>
1082                               <clade>
1083                                 <taxonomy>
1084                                   <id provider="uniprot">10224</id>
1085                                   <code>SACKO</code>
1086                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1087                                   <authority>Agassiz, 1873</authority>
1088                                   <common_name>Acorn worm</common_name>
1089                                   <rank>species</rank>
1090                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1091                                 </taxonomy>
1092                               </clade>
1093                               <clade>
1094                                 <taxonomy>
1095                                   <id provider="uniprot">7668</id>
1096                                   <code>STRPU</code>
1097                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1098                                   <common_name>Purple sea urchin</common_name>
1099                                   <rank>species</rank>
1100                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1101                                 </taxonomy>
1102                               </clade>
1103                             </clade>
1104                           </clade>
1105                           <clade>
1106                             <name>Protostomia</name>
1107                             <clade>
1108                               <name>Ecdysozoa</name>
1109                               <clade>
1110                                 <taxonomy>
1111                                   <id provider="uniprot">6656</id>
1112                                   <scientific_name>Arthropoda</scientific_name>
1113                                   <rank>phylum</rank>
1114                                 </taxonomy>
1115                                 <clade>
1116                                   <taxonomy>
1117                                     <id provider="uniprot">197563</id>
1118                                     <scientific_name>Mandibulata</scientific_name>
1119                                   </taxonomy>
1120                                   <clade>
1121                                     <name>Pancrustacea</name>
1122                                     <clade>
1123                                       <taxonomy>
1124                                         <id provider="uniprot">33340</id>
1125                                         <scientific_name>Neoptera</scientific_name>
1126                                         <rank>subclass</rank>
1127                                       </taxonomy>
1128                                       <clade>
1129                                         <taxonomy>
1130                                           <id provider="uniprot">33392</id>
1131                                           <scientific_name>Endopterygota</scientific_name>
1132                                           <rank>infraclass</rank>
1133                                         </taxonomy>
1134                                         <clade>
1135                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1136                                           <clade>
1137                                             <name>Lepidoptera &amp; Diptera</name>
1138                                             <clade>
1139                                               <taxonomy>
1140                                                 <id provider="uniprot">7147</id>
1141                                                 <scientific_name>Diptera</scientific_name>
1142                                                 <rank>order</rank>
1143                                               </taxonomy>
1144                                               <clade>
1145                                                 <taxonomy>
1146                                                   <id provider="uniprot">7157</id>
1147                                                   <scientific_name>Culicidae</scientific_name>
1148                                                   <common_name>mosquitos</common_name>
1149                                                   <rank>family</rank>
1150                                                 </taxonomy>
1151                                                 <clade>
1152                                                   <taxonomy>
1153                                                     <id provider="uniprot">7159</id>
1154                                                     <code>AEDAE</code>
1155                                                     <scientific_name>Aedes aegypti</scientific_name>
1156                                                     <common_name>Yellowfever mosquito</common_name>
1157                                                     <synonym>Culex aegypti</synonym>
1158                                                     <rank>species</rank>
1159                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1160                                                   </taxonomy>
1161                                                 </clade>
1162                                                 <clade>
1163                                                   <taxonomy>
1164                                                     <id provider="uniprot">7165</id>
1165                                                     <code>ANOGA</code>
1166                                                     <scientific_name>Anopheles gambiae</scientific_name>
1167                                                     <common_name>African malaria mosquito</common_name>
1168                                                     <rank>species</rank>
1169                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1170                                                   </taxonomy>
1171                                                 </clade>
1172                                               </clade>
1173                                               <clade>
1174                                                 <taxonomy>
1175                                                   <id provider="uniprot">32341</id>
1176                                                   <scientific_name>Sophophora</scientific_name>
1177                                                   <rank>subgenus</rank>
1178                                                 </taxonomy>
1179                                                 <clade>
1180                                                   <taxonomy>
1181                                                     <id provider="uniprot">7227</id>
1182                                                     <code>DROME</code>
1183                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1184                                                     <common_name>Fruit fly</common_name>
1185                                                     <rank>species</rank>
1186                                                   </taxonomy>
1187                                                 </clade>
1188                                                 <clade>
1189                                                   <taxonomy>
1190                                                     <id provider="uniprot">46245</id>
1191                                                     <code>DROPS</code>
1192                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1193                                                     <common_name>Fruit fly</common_name>
1194                                                     <rank>subspecies</rank>
1195                                                   </taxonomy>
1196                                                 </clade>
1197                                               </clade>
1198                                             </clade>
1199                                             <clade>
1200                                               <taxonomy>
1201                                                 <id provider="uniprot">7091</id>
1202                                                 <code>BOMMO</code>
1203                                                 <scientific_name>Bombyx mori</scientific_name>
1204                                                 <common_name>Silk moth</common_name>
1205                                                 <rank>species</rank>
1206                                               </taxonomy>
1207                                             </clade>
1208                                           </clade>
1209                                           <clade>
1210                                             <taxonomy>
1211                                               <id provider="uniprot">7400</id>
1212                                               <scientific_name>Apocrita</scientific_name>
1213                                               <common_name>wasps, ants and bees</common_name>
1214                                             </taxonomy>
1215                                             <clade>
1216                                               <taxonomy>
1217                                                 <id provider="uniprot">7460</id>
1218                                                 <code>APIME</code>
1219                                                 <scientific_name>Apis mellifera</scientific_name>
1220                                                 <common_name>Honeybee</common_name>
1221                                                 <rank>species</rank>
1222                                               </taxonomy>
1223                                             </clade>
1224                                             <clade>
1225                                               <taxonomy>
1226                                                 <id provider="uniprot">7425</id>
1227                                                 <code>NASVI</code>
1228                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1229                                                 <common_name>Parasitic wasp</common_name>
1230                                                 <rank>species</rank>
1231                                               </taxonomy>
1232                                             </clade>
1233                                           </clade>
1234                                         </clade>
1235                                         <clade>
1236                                           <taxonomy>
1237                                             <id provider="uniprot">7070</id>
1238                                             <code>TRICA</code>
1239                                             <scientific_name>Tribolium castaneum</scientific_name>
1240                                             <common_name>Red flour beetle</common_name>
1241                                             <rank>species</rank>
1242                                           </taxonomy>
1243                                         </clade>
1244                                       </clade>
1245                                       <clade>
1246                                         <taxonomy>
1247                                           <id provider="uniprot">7524</id>
1248                                           <scientific_name>Hemiptera</scientific_name>
1249                                           <rank>order</rank>
1250                                         </taxonomy>
1251                                         <clade>
1252                                           <taxonomy>
1253                                             <id provider="uniprot">7029</id>
1254                                             <code>ACYPI</code>
1255                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1256                                             <common_name>Pea aphid</common_name>
1257                                             <rank>species</rank>
1258                                           </taxonomy>
1259                                         </clade>
1260                                         <clade>
1261                                           <taxonomy>
1262                                             <id provider="uniprot">13249</id>
1263                                             <code>RHOPR</code>
1264                                             <scientific_name>Rhodnius prolixus</scientific_name>
1265                                             <common_name>Triatomid bug</common_name>
1266                                             <rank>species</rank>
1267                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1268                                           </taxonomy>
1269                                         </clade>
1270                                       </clade>
1271                                     </clade>
1272                                     <clade>
1273                                       <taxonomy>
1274                                         <id provider="uniprot">6658</id>
1275                                         <scientific_name>Branchiopoda</scientific_name>
1276                                         <rank>class</rank>
1277                                       </taxonomy>
1278                                       <clade>
1279                                         <taxonomy>
1280                                           <id provider="uniprot">6661</id>
1281                                           <code>ARTSF</code>
1282                                           <scientific_name>Artemia franciscana</scientific_name>
1283                                           <common_name>Brine shrimp</common_name>
1284                                           <synonym>Artemia sanfranciscana</synonym>
1285                                           <rank>species</rank>
1286                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1287                                         </taxonomy>
1288                                       </clade>
1289                                       <clade>
1290                                         <taxonomy>
1291                                           <id provider="uniprot">6669</id>
1292                                           <code>DAPPU</code>
1293                                           <scientific_name>Daphnia pulex</scientific_name>
1294                                           <common_name>Water flea</common_name>
1295                                           <rank>species</rank>
1296                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1297                                         </taxonomy>
1298                                       </clade>
1299                                     </clade>
1300                                   </clade>
1301                                   <clade>
1302                                     <taxonomy>
1303                                       <id provider="uniprot">61985</id>
1304                                       <scientific_name>Myriapoda</scientific_name>
1305                                       <rank>subphylum</rank>
1306                                     </taxonomy>
1307                                     <clade>
1308                                       <taxonomy>
1309                                         <id provider="uniprot">7553</id>
1310                                         <scientific_name>Diplopoda</scientific_name>
1311                                         <common_name>millipedes</common_name>
1312                                         <rank>class</rank>
1313                                       </taxonomy>
1314                                       <clade>
1315                                         <taxonomy>
1316                                           <id provider="uniprot">118561</id>
1317                                           <scientific_name>Helminthomorpha</scientific_name>
1318                                           <rank>subclass</rank>
1319                                         </taxonomy>
1320                                         <clade>
1321                                           <taxonomy>
1322                                             <id provider="uniprot">364406</id>
1323                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1324                                             <rank>species</rank>
1325                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1326                                           </taxonomy>
1327                                         </clade>
1328                                         <clade>
1329                                           <taxonomy>
1330                                             <id provider="uniprot">174156</id>
1331                                             <code>NARAN</code>
1332                                             <scientific_name>Narceus annularis</scientific_name>
1333                                             <common_name>Millipede</common_name>
1334                                             <rank>species</rank>
1335                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1336                                           </taxonomy>
1337                                         </clade>
1338                                       </clade>
1339                                       <clade>
1340                                         <taxonomy>
1341                                           <id provider="uniprot">52428</id>
1342                                           <scientific_name>Polyxenus lagurus</scientific_name>
1343                                           <common_name>bristly millipede</common_name>
1344                                           <rank>species</rank>
1345                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1346                                         </taxonomy>
1347                                       </clade>
1348                                     </clade>
1349                                     <clade>
1350                                       <taxonomy>
1351                                         <id provider="uniprot">7540</id>
1352                                         <scientific_name>Chilopoda</scientific_name>
1353                                         <common_name>centipedes</common_name>
1354                                         <rank>class</rank>
1355                                       </taxonomy>
1356                                       <clade>
1357                                         <taxonomy>
1358                                           <id provider="uniprot">29022</id>
1359                                           <code>SCUCO</code>
1360                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1361                                           <common_name>House centipede</common_name>
1362                                           <rank>species</rank>
1363                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1364                                         </taxonomy>
1365                                       </clade>
1366                                       <clade>
1367                                         <taxonomy>
1368                                           <id provider="uniprot">126957</id>
1369                                           <scientific_name>Strigamia maritima</scientific_name>
1370                                           <rank>species</rank>
1371                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1372                                         </taxonomy>
1373                                       </clade>
1374                                     </clade>
1375                                   </clade>
1376                                 </clade>
1377                                 <clade>
1378                                   <taxonomy>
1379                                     <id provider="uniprot">6945</id>
1380                                     <code>IXOSC</code>
1381                                     <scientific_name>Ixodes scapularis</scientific_name>
1382                                     <common_name>Black-legged tick</common_name>
1383                                     <synonym>Deer tick</synonym>
1384                                     <rank>species</rank>
1385                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1386                                   </taxonomy>
1387                                 </clade>
1388                               </clade>
1389                               <clade>
1390                                 <taxonomy>
1391                                   <id provider="uniprot">119089</id>
1392                                   <scientific_name>Chromadorea</scientific_name>
1393                                   <rank>class</rank>
1394                                 </taxonomy>
1395                                 <reference doi="10.1038/32160">
1396                                 </reference>
1397                                 <clade>
1398                                   <name>nematode Clade V</name>
1399                                   <clade>
1400                                     <name>Caenorhabditis</name>
1401                                     <taxonomy>
1402                                       <id provider="uniprot">6237</id>
1403                                       <scientific_name>Caenorhabditis</scientific_name>
1404                                       <rank>genus</rank>
1405                                     </taxonomy>
1406                                     <clade>
1407                                       <taxonomy>
1408                                         <id provider="uniprot">6238</id>
1409                                         <code>CAEBR</code>
1410                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1411                                         <rank>species</rank>
1412                                       </taxonomy>
1413                                     </clade>
1414                                     <clade>
1415                                       <taxonomy>
1416                                         <id provider="uniprot">6239</id>
1417                                         <code>CAEEL</code>
1418                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1419                                         <rank>species</rank>
1420                                       </taxonomy>
1421                                     </clade>
1422                                   </clade>
1423                                   <clade>
1424                                     <taxonomy>
1425                                       <id provider="uniprot">54126</id>
1426                                       <code>PRIPA</code>
1427                                       <scientific_name>Pristionchus pacificus</scientific_name>
1428                                       <rank>species</rank>
1429                                     </taxonomy>
1430                                   </clade>
1431                                 </clade>
1432                                 <clade>
1433                                   <taxonomy>
1434                                     <id provider="uniprot">6279</id>
1435                                     <code>BRUMA</code>
1436                                     <scientific_name>Brugia malayi</scientific_name>
1437                                     <common_name>Filarial nematode worm</common_name>
1438                                     <rank>species</rank>
1439                                   </taxonomy>
1440                                 </clade>
1441                               </clade>
1442                             </clade>
1443                             <clade>
1444                               <name>Lophotrochozoa</name>
1445                               <clade>
1446                                 <name>Annelida &amp; Mollusca</name>
1447                                 <clade>
1448                                   <taxonomy>
1449                                     <id provider="uniprot">6340</id>
1450                                     <scientific_name>Annelida</scientific_name>
1451                                     <rank>phylum</rank>
1452                                   </taxonomy>
1453                                   <clade>
1454                                     <name>CAP</name>
1455                                     <taxonomy>
1456                                       <id provider="uniprot">283909</id>
1457                                       <scientific_name>Capitella teleta</scientific_name>
1458                                       <rank>species</rank>
1459                                     </taxonomy>
1460                                   </clade>
1461                                   <clade>
1462                                     <taxonomy>
1463                                       <id provider="uniprot">6412</id>
1464                                       <code>HELRO</code>
1465                                       <scientific_name>Helobdella robusta</scientific_name>
1466                                       <common_name>Californian leech</common_name>
1467                                       <rank>species</rank>
1468                                     </taxonomy>
1469                                   </clade>
1470                                 </clade>
1471                                 <clade>
1472                                   <taxonomy>
1473                                     <id provider="uniprot">225164</id>
1474                                     <code>LOTGI</code>
1475                                     <scientific_name>Lottia gigantea</scientific_name>
1476                                     <common_name>Owl limpet</common_name>
1477                                     <rank>species</rank>
1478                                   </taxonomy>
1479                                 </clade>
1480                               </clade>
1481                               <clade>
1482                                 <taxonomy>
1483                                   <id provider="uniprot">6157</id>
1484                                   <scientific_name>Platyhelminthes</scientific_name>
1485                                   <rank>phylum</rank>
1486                                 </taxonomy>
1487                                 <clade>
1488                                   <taxonomy>
1489                                     <id provider="uniprot">6183</id>
1490                                     <code>SCHMA</code>
1491                                     <scientific_name>Schistosoma mansoni</scientific_name>
1492                                     <common_name>Blood fluke</common_name>
1493                                     <rank>species</rank>
1494                                   </taxonomy>
1495                                 </clade>
1496                                 <clade>
1497                                   <taxonomy>
1498                                     <id provider="uniprot">79327</id>
1499                                     <code>SCHMD</code>
1500                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1501                                     <common_name>Freshwater planarian flatworm</common_name>
1502                                     <rank>species</rank>
1503                                   </taxonomy>
1504                                 </clade>
1505                               </clade>
1506                             </clade>
1507                           </clade>
1508                         </clade>
1509                         <clade>
1510                           <name>Cnidaria</name>
1511                           <taxonomy>
1512                             <id provider="uniprot">6073</id>
1513                             <scientific_name>Cnidaria</scientific_name>
1514                             <rank>phylum</rank>
1515                           </taxonomy>
1516                           <clade>
1517                             <taxonomy>
1518                               <id provider="uniprot">6102</id>
1519                               <scientific_name>Hexacorallia</scientific_name>
1520                               <synonym>Ceriantipatharia</synonym>
1521                               <synonym>Zoantharia</synonym>
1522                               <rank>subclass</rank>
1523                             </taxonomy>
1524                             <clade>
1525                               <taxonomy>
1526                                 <id provider="uniprot">45351</id>
1527                                 <code>NEMVE</code>
1528                                 <scientific_name>Nematostella vectensis</scientific_name>
1529                                 <common_name>Starlet sea anemone</common_name>
1530                                 <rank>species</rank>
1531                               </taxonomy>
1532                             </clade>
1533                             <clade>
1534                               <taxonomy>
1535                                 <id provider="uniprot">70779</id>
1536                                 <code>ACRDI</code>
1537                                 <scientific_name>Acropora digitifera</scientific_name>
1538                                 <common_name>Staghorn coral</common_name>
1539                                 <rank>species</rank>
1540                                 <uri>http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg</uri>
1541                               </taxonomy>
1542                             </clade>
1543                           </clade>
1544                           <clade>
1545                             <taxonomy>
1546                               <id provider="eol">9119928</id>
1547                               <code>HYDMA</code>
1548                               <scientific_name>Hydra magnipapillata</scientific_name>
1549                               <authority>Ito, 1947</authority>
1550                               <rank>species</rank>
1551                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1552                             </taxonomy>
1553                           </clade>
1554                         </clade>
1555                       </clade>
1556                       <clade>
1557                         <taxonomy>
1558                           <id provider="uniprot">10228</id>
1559                           <code>TRIAD</code>
1560                           <scientific_name>Trichoplax adhaerens</scientific_name>
1561                           <synonym>Trichoplax reptans</synonym>
1562                           <rank>species</rank>
1563                         </taxonomy>
1564                         <reference doi="10.1073/pnas.0602076103">
1565                         </reference>
1566                       </clade>
1567                     </clade>
1568                     <clade>
1569                       <taxonomy>
1570                         <id provider="uniprot">400682</id>
1571                         <code>AMPQU</code>
1572                         <scientific_name>Amphimedon queenslandica</scientific_name>
1573                         <rank>species</rank>
1574                       </taxonomy>
1575                     </clade>
1576                   </clade>
1577                   <clade>
1578                     <taxonomy>
1579                       <id provider="uniprot">81524</id>
1580                       <scientific_name>Codonosigidae</scientific_name>
1581                       <rank>family</rank>
1582                     </taxonomy>
1583                     <clade>
1584                       <taxonomy>
1585                         <id provider="uniprot">81824</id>
1586                         <code>MONBE</code>
1587                         <scientific_name>Monosiga brevicollis</scientific_name>
1588                         <common_name>Choanoflagellate</common_name>
1589                         <rank>species</rank>
1590                       </taxonomy>
1591                     </clade>
1592                     <clade>
1593                       <taxonomy>
1594                         <id provider="uniprot">946362</id>
1595                         <code>SALS5</code>
1596                         <scientific_name>Salpingoeca rosetta</scientific_name>
1597                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1598                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1599                         <rank>species</rank>
1600                       </taxonomy>
1601                     </clade>
1602                   </clade>
1603                 </clade>
1604                 <clade>
1605                   <name>Ichthyophonida &amp; Filasterea</name>
1606                   <clade>
1607                     <taxonomy>
1608                       <id provider="uniprot">198625</id>
1609                       <scientific_name>Ichthyophonida</scientific_name>
1610                       <rank>order</rank>
1611                     </taxonomy>
1612                     <clade>
1613                       <taxonomy>
1614                         <id provider="uniprot">4881</id>
1615                         <code>AMOPA</code>
1616                         <scientific_name>Amoebidium parasiticum</scientific_name>
1617                         <rank>species</rank>
1618                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1619                       </taxonomy>
1620                     </clade>
1621                     <clade>
1622                       <name>SPHARC</name>
1623                       <taxonomy>
1624                         <id provider="uniprot">72019</id>
1625                         <scientific_name>Sphaeroforma arctica</scientific_name>
1626                         <rank>species</rank>
1627                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1628                       </taxonomy>
1629                     </clade>
1630                   </clade>
1631                   <clade>
1632                     <taxonomy>
1633                       <scientific_name>Filasterea</scientific_name>
1634                     </taxonomy>
1635                     <reference doi="10.1371/journal.pone.0002098">
1636                     </reference>
1637                     <reference>
1638                     </reference>
1639                     <clade>
1640                       <name>CAPOWC</name>
1641                       <taxonomy>
1642                         <id provider="uniprot">192875</id>
1643                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1644                         <rank>species</rank>
1645                       </taxonomy>
1646                     </clade>
1647                     <clade>
1648                       <name>MINVIB</name>
1649                       <taxonomy>
1650                         <id provider="uniprot">134558</id>
1651                         <scientific_name>Ministeria vibrans</scientific_name>
1652                         <rank>species</rank>
1653                       </taxonomy>
1654                     </clade>
1655                   </clade>
1656                 </clade>
1657               </clade>
1658               <clade>
1659                 <taxonomy>
1660                   <scientific_name>Holomycota</scientific_name>
1661                   <synonym>Nucletmycea</synonym>
1662                 </taxonomy>
1663                 <clade>
1664                   <taxonomy>
1665                     <id provider="uniprot">4751</id>
1666                     <scientific_name>Fungi</scientific_name>
1667                     <rank>kingdom</rank>
1668                   </taxonomy>
1669                   <clade>
1670                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
1671                     <clade>
1672                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1673                       <clade>
1674                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1675                         <clade>
1676                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1677                           <clade>
1678                             <name>Dikarya &amp; Mucoromycotina</name>
1679                             <clade>
1680                               <taxonomy>
1681                                 <id provider="uniprot">451864</id>
1682                                 <scientific_name>Dikarya</scientific_name>
1683                                 <rank>subkingdom</rank>
1684                               </taxonomy>
1685                               <reference doi="10.1038/nature05110">
1686                               </reference>
1687                               <reference>
1688                               </reference>
1689                               <clade>
1690                                 <taxonomy>
1691                                   <id provider="uniprot">4890</id>
1692                                   <scientific_name>Ascomycota</scientific_name>
1693                                   <rank>phylum</rank>
1694                                 </taxonomy>
1695                                 <clade>
1696                                   <name>Pezizomycotina_Saccharomycetales</name>
1697                                   <clade>
1698                                     <taxonomy>
1699                                       <id provider="uniprot">147538</id>
1700                                       <scientific_name>Pezizomycotina</scientific_name>
1701                                       <synonym>Euascomycota</synonym>
1702                                       <rank>subphylum</rank>
1703                                     </taxonomy>
1704                                     <reference doi="0.3852/mycologia.98.6.1018">
1705                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>
1706                                     </reference>
1707                                     <reference>
1708                                     </reference>
1709                                     <clade>
1710                                       <taxonomy>
1711                                         <id provider="uniprot">716546</id>
1712                                         <scientific_name>Leotiomyceta</scientific_name>
1713                                       </taxonomy>
1714                                       <clade>
1715                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1716                                         <clade>
1717                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1718                                           <clade>
1719                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>
1720                                             <clade>
1721                                               <taxonomy>
1722                                                 <id provider="uniprot">715989</id>
1723                                                 <scientific_name>Sordariomyceta</scientific_name>
1724                                               </taxonomy>
1725                                               <clade>
1726                                                 <taxonomy>
1727                                                   <id provider="uniprot">147550</id>
1728                                                   <scientific_name>Sordariomycetes</scientific_name>
1729                                                   <rank>class</rank>
1730                                                 </taxonomy>
1731                                                 <clade>
1732                                                   <name>Magnaporthales &amp; Hypocreales</name>
1733                                                   <clade>
1734                                                     <taxonomy>
1735                                                       <id provider="uniprot">5125</id>
1736                                                       <scientific_name>Hypocreales</scientific_name>
1737                                                       <rank>order</rank>
1738                                                     </taxonomy>
1739                                                     <clade>
1740                                                       <name>ACRALC</name>
1741                                                       <taxonomy>
1742                                                         <id provider="uniprot">398408</id>
1743                                                         <scientific_name>Acremonium alcalophilum</scientific_name>
1744                                                         <rank>species</rank>
1745                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1746                                                       </taxonomy>
1747                                                     </clade>
1748                                                     <clade>
1749                                                       <taxonomy>
1750                                                         <id provider="uniprot">29875</id>
1751                                                         <code>TRIVE</code>
1752                                                         <scientific_name>Trichoderma virens</scientific_name>
1753                                                         <common_name>Gliocladium virens</common_name>
1754                                                         <synonym>Trichoderma virens</synonym>
1755                                                         <rank>species</rank>
1756                                                       </taxonomy>
1757                                                     </clade>
1758                                                   </clade>
1759                                                   <clade>
1760                                                     <taxonomy>
1761                                                       <id provider="uniprot">148305</id>
1762                                                       <code>MAGGR</code>
1763                                                       <scientific_name>Magnaporthe grisea</scientific_name>
1764                                                       <common_name>Rice blast fungus</common_name>
1765                                                       <synonym>Pyricularia grisea</synonym>
1766                                                       <rank>species</rank>
1767                                                     </taxonomy>
1768                                                   </clade>
1769                                                 </clade>
1770                                                 <clade>
1771                                                   <taxonomy>
1772                                                     <id provider="uniprot">5139</id>
1773                                                     <scientific_name>Sordariales</scientific_name>
1774                                                     <rank>order</rank>
1775                                                   </taxonomy>
1776                                                   <clade>
1777                                                     <taxonomy>
1778                                                       <id provider="uniprot">35718</id>
1779                                                       <scientific_name>Chaetomiaceae</scientific_name>
1780                                                       <rank>family</rank>
1781                                                     </taxonomy>
1782                                                     <clade>
1783                                                       <taxonomy>
1784                                                         <id provider="uniprot">35719</id>
1785                                                         <scientific_name>Thielavia</scientific_name>
1786                                                         <rank>genus</rank>
1787                                                       </taxonomy>
1788                                                       <clade>
1789                                                         <name>MYCTHE</name>
1790                                                         <taxonomy>
1791                                                           <id provider="uniprot">573728</id>
1792                                                           <scientific_name>Myceliophthora thermophila</scientific_name>
1793                                                           <authority>(Apinis) Oorschot 1977</authority>
1794                                                           <synonym>Sporotrichum thermophilum</synonym>
1795                                                           <synonym>anamorph of Thielavia heterothallica</synonym>
1796                                                           <rank>species</rank>
1797                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1798                                                         </taxonomy>
1799                                                       </clade>
1800                                                       <clade>
1801                                                         <name>THITER</name>
1802                                                         <taxonomy>
1803                                                           <id provider="eol">193532</id>
1804                                                           <scientific_name>Thielavia terrestris</scientific_name>
1805                                                           <authority>Malloch &amp; Cain 1972</authority>
1806                                                           <synonym>Acremonium alabamense</synonym>
1807                                                           <rank>species</rank>
1808                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1809                                                         </taxonomy>
1810                                                       </clade>
1811                                                     </clade>
1812                                                     <clade>
1813                                                       <taxonomy>
1814                                                         <id provider="eol">1029505</id>
1815                                                         <code>CHAGB</code>
1816                                                         <scientific_name>Chaetomium globosum</scientific_name>
1817                                                         <authority>Kunze 1817</authority>
1818                                                         <common_name>Soil fungus</common_name>
1819                                                         <rank>species</rank>
1820                                                       </taxonomy>
1821                                                     </clade>
1822                                                   </clade>
1823                                                   <clade>
1824                                                     <taxonomy>
1825                                                       <id provider="uniprot">5141</id>
1826                                                       <code>NEUCR</code>
1827                                                       <scientific_name>Neurospora crassa</scientific_name>
1828                                                       <rank>species</rank>
1829                                                     </taxonomy>
1830                                                   </clade>
1831                                                 </clade>
1832                                               </clade>
1833                                               <clade>
1834                                                 <taxonomy>
1835                                                   <id provider="uniprot">147548</id>
1836                                                   <scientific_name>Leotiomycetes</scientific_name>
1837                                                   <rank>class</rank>
1838                                                 </taxonomy>
1839                                                 <clade>
1840                                                   <taxonomy>
1841                                                     <id provider="uniprot">28983</id>
1842                                                     <scientific_name>Sclerotiniaceae</scientific_name>
1843                                                     <rank>family</rank>
1844                                                   </taxonomy>
1845                                                   <clade>
1846                                                     <taxonomy>
1847                                                       <id provider="uniprot">40559</id>
1848                                                       <code>BOTFU</code>
1849                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>
1850                                                       <common_name>Noble rot fungus</common_name>
1851                                                       <synonym>Botrytis cinerea</synonym>
1852                                                       <rank>species</rank>
1853                                                     </taxonomy>
1854                                                   </clade>
1855                                                   <clade>
1856                                                     <taxonomy>
1857                                                       <id provider="uniprot">5180</id>
1858                                                       <code>SCLSC</code>
1859                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>
1860                                                       <common_name>White mold</common_name>
1861                                                       <synonym>Whetzelinia sclerotiorum</synonym>
1862                                                       <rank>species</rank>
1863                                                     </taxonomy>
1864                                                   </clade>
1865                                                 </clade>
1866                                                 <clade>
1867                                                   <name>OIDMAI</name>
1868                                                   <taxonomy>
1869                                                     <id provider="uniprot">78148</id>
1870                                                     <scientific_name>Oidiodendron maius</scientific_name>
1871                                                     <rank>species</rank>
1872                                                   </taxonomy>
1873                                                 </clade>
1874                                               </clade>
1875                                             </clade>
1876                                             <clade>
1877                                               <taxonomy>
1878                                                 <id provider="uniprot">388435</id>
1879                                                 <scientific_name>Lecanoromycetidae</scientific_name>
1880                                                 <rank>subclass</rank>
1881                                               </taxonomy>
1882                                               <clade>
1883                                                 <name>CLAGRA</name>
1884                                                 <taxonomy>
1885                                                   <id provider="uniprot">27339</id>
1886                                                   <scientific_name>Cladonia grayi</scientific_name>
1887                                                   <synonym>Cladonia grayi Merr</synonym>
1888                                                   <rank>species</rank>
1889                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
1890                                                 </taxonomy>
1891                                               </clade>
1892                                               <clade>
1893                                                 <name>XANPAR</name>
1894                                                 <taxonomy>
1895                                                   <id provider="uniprot">107463</id>
1896                                                   <scientific_name>Xanthoria parietina</scientific_name>
1897                                                   <rank>species</rank>
1898                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
1899                                                 </taxonomy>
1900                                               </clade>
1901                                             </clade>
1902                                           </clade>
1903                                           <clade>
1904                                             <taxonomy>
1905                                               <id provider="uniprot">147541</id>
1906                                               <scientific_name>Dothideomycetes</scientific_name>
1907                                               <rank>class</rank>
1908                                             </taxonomy>
1909                                             <reference doi="10.3114/sim.2009.64.01">
1910                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
1911                                             </reference>
1912                                             <clade>
1913                                               <taxonomy>
1914                                                 <id provider="uniprot">134362</id>
1915                                                 <scientific_name>Capnodiales</scientific_name>
1916                                                 <rank>order</rank>
1917                                               </taxonomy>
1918                                               <clade>
1919                                                 <taxonomy>
1920                                                   <id provider="uniprot">41254</id>
1921                                                   <scientific_name>Mycosphaerella</scientific_name>
1922                                                   <rank>genus</rank>
1923                                                 </taxonomy>
1924                                                 <clade>
1925                                                   <name>MYCFI</name>
1926                                                   <taxonomy>
1927                                                     <id provider="uniprot">83344</id>
1928                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>
1929                                                     <rank>species</rank>
1930                                                   </taxonomy>
1931                                                 </clade>
1932                                                 <clade>
1933                                                   <name>MYCPOP</name>
1934                                                   <taxonomy>
1935                                                     <id provider="uniprot">85929</id>
1936                                                     <scientific_name>Mycosphaerella populorum</scientific_name>
1937                                                     <synonym>Septoria musiva</synonym>
1938                                                     <rank>species</rank>
1939                                                   </taxonomy>
1940                                                 </clade>
1941                                               </clade>
1942                                               <clade>
1943                                                 <name>BAUCOM</name>
1944                                                 <taxonomy>
1945                                                   <id provider="uniprot">430998</id>
1946                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
1947                                                   <rank>species</rank>
1948                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
1949                                                 </taxonomy>
1950                                               </clade>
1951                                             </clade>
1952                                             <clade>
1953                                               <taxonomy>
1954                                                 <id provider="uniprot">715340</id>
1955                                                 <scientific_name>Pleosporineae</scientific_name>
1956                                                 <rank>suborder</rank>
1957                                               </taxonomy>
1958                                               <clade>
1959                                                 <taxonomy>
1960                                                   <id provider="uniprot">28556</id>
1961                                                   <scientific_name>Pleosporaceae</scientific_name>
1962                                                   <rank>family</rank>
1963                                                 </taxonomy>
1964                                                 <clade>
1965                                                   <name>Cochliobolus &amp; Setosphaeria</name>
1966                                                   <clade>
1967                                                     <taxonomy>
1968                                                       <id provider="uniprot">5015</id>
1969                                                       <scientific_name>Cochliobolus</scientific_name>
1970                                                       <rank>genus</rank>
1971                                                     </taxonomy>
1972                                                     <clade>
1973                                                       <taxonomy>
1974                                                         <id provider="uniprot">5016</id>
1975                                                         <code>COCHE</code>
1976                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>
1977                                                         <synonym>Drechslera maydis</synonym>
1978                                                         <rank>species</rank>
1979                                                       </taxonomy>
1980                                                     </clade>
1981                                                     <clade>
1982                                                       <taxonomy>
1983                                                         <id provider="uniprot">45130</id>
1984                                                         <code>COCSA</code>
1985                                                         <scientific_name>Cochliobolus sativus</scientific_name>
1986                                                         <synonym>Bipolaris sorokiniana</synonym>
1987                                                         <rank>species</rank>
1988                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
1989                                                       </taxonomy>
1990                                                     </clade>
1991                                                   </clade>
1992                                                   <clade>
1993                                                     <taxonomy>
1994                                                       <id provider="uniprot">93612</id>
1995                                                       <code>SETTU</code>
1996                                                       <scientific_name>Setosphaeria turcica</scientific_name>
1997                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
1998                                                       <common_name>Northern corn leaf blight disease fungus</common_name>
1999                                                       <synonym>Exserohilum turcicum</synonym>
2000                                                       <synonym>Helminthosporium turcicum</synonym>
2001                                                       <rank>species</rank>
2002                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
2003                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
2004                                                     </taxonomy>
2005                                                   </clade>
2006                                                 </clade>
2007                                                 <clade>
2008                                                   <taxonomy>
2009                                                     <id provider="uniprot">426418</id>
2010                                                     <code>PYRTR</code>
2011                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2012                                                     <common_name>Wheat tan spot fungus</common_name>
2013                                                     <synonym>Drechslera tritici-repentis</synonym>
2014                                                   </taxonomy>
2015                                                 </clade>
2016                                               </clade>
2017                                               <clade>
2018                                                 <taxonomy>
2019                                                   <id provider="uniprot">13684</id>
2020                                                   <code>PHANO</code>
2021                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>
2022                                                   <common_name>Glume blotch fungus</common_name>
2023                                                   <synonym>Septoria nodorum</synonym>
2024                                                   <rank>species</rank>
2025                                                 </taxonomy>
2026                                               </clade>
2027                                             </clade>
2028                                           </clade>
2029                                         </clade>
2030                                         <clade>
2031                                           <taxonomy>
2032                                             <id provider="uniprot">28568</id>
2033                                             <scientific_name>Trichocomaceae</scientific_name>
2034                                             <rank>family</rank>
2035                                           </taxonomy>
2036                                           <clade>
2037                                             <name>Neosartorya_Emericella</name>
2038                                             <clade>
2039                                               <taxonomy>
2040                                                 <id provider="eol">195546</id>
2041                                                 <code>EMENI</code>
2042                                                 <scientific_name>Emericella nidulans</scientific_name>
2043                                                 <authority>Vuill. 1927</authority>
2044                                                 <synonym>Aspergillus nidulans</synonym>
2045                                                 <rank>species</rank>
2046                                               </taxonomy>
2047                                             </clade>
2048                                             <clade>
2049                                               <taxonomy>
2050                                                 <id provider="uniprot">331117</id>
2051                                                 <code>NEOFI</code>
2052                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2053                                                 <synonym>Aspergillus fischerianus</synonym>
2054                                               </taxonomy>
2055                                             </clade>
2056                                           </clade>
2057                                           <clade>
2058                                             <taxonomy>
2059                                               <id provider="uniprot">5052</id>
2060                                               <scientific_name>Aspergillus</scientific_name>
2061                                               <rank>genus</rank>
2062                                             </taxonomy>
2063                                             <clade>
2064                                               <taxonomy>
2065                                                 <id provider="uniprot">5059</id>
2066                                                 <code>ASPFL</code>
2067                                                 <scientific_name>Aspergillus flavus</scientific_name>
2068                                                 <rank>species</rank>
2069                                               </taxonomy>
2070                                             </clade>
2071                                             <clade>
2072                                               <taxonomy>
2073                                                 <id provider="uniprot">5061</id>
2074                                                 <code>ASPNG</code>
2075                                                 <scientific_name>Aspergillus niger</scientific_name>
2076                                                 <rank>species</rank>
2077                                               </taxonomy>
2078                                             </clade>
2079                                           </clade>
2080                                         </clade>
2081                                       </clade>
2082                                       <clade>
2083                                         <taxonomy>
2084                                           <id provider="uniprot">33183</id>
2085                                           <scientific_name>Onygenales</scientific_name>
2086                                           <rank>order</rank>
2087                                         </taxonomy>
2088                                         <clade>
2089                                           <taxonomy>
2090                                             <id provider="uniprot">5501</id>
2091                                             <code>COCIM</code>
2092                                             <scientific_name>Coccidioides immitis</scientific_name>
2093                                             <common_name>Valley fever fungus</common_name>
2094                                             <rank>species</rank>
2095                                           </taxonomy>
2096                                         </clade>
2097                                         <clade>
2098                                           <taxonomy>
2099                                             <id provider="uniprot">336963</id>
2100                                             <code>UNCRE</code>
2101                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2102                                           </taxonomy>
2103                                         </clade>
2104                                       </clade>
2105                                     </clade>
2106                                     <clade>
2107                                       <taxonomy>
2108                                         <id provider="uniprot">656061</id>
2109                                         <code>TUBMM</code>
2110                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2111                                         <common_name>Perigord black truffle</common_name>
2112                                         <synonym>Tuber melanosporum Mel28</synonym>
2113                                         <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
2114                                       </taxonomy>
2115                                     </clade>
2116                                   </clade>
2117                                   <clade>
2118                                     <taxonomy>
2119                                       <id provider="uniprot">4892</id>
2120                                       <scientific_name>Saccharomycetales</scientific_name>
2121                                       <common_name>budding yeasts</common_name>
2122                                       <rank>order</rank>
2123                                     </taxonomy>
2124                                     <clade>
2125                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2126                                       <clade>
2127                                         <taxonomy>
2128                                           <id provider="uniprot">4893</id>
2129                                           <scientific_name>Saccharomycetaceae</scientific_name>
2130                                           <rank>family</rank>
2131                                         </taxonomy>
2132                                         <clade>
2133                                           <name>Saccharomyces_Pichia</name>
2134                                           <clade>
2135                                             <name>Saccharomyces</name>
2136                                             <clade>
2137                                               <taxonomy>
2138                                                 <id provider="uniprot">27288</id>
2139                                                 <code>SACCA</code>
2140                                                 <scientific_name>Saccharomyces castellii</scientific_name>
2141                                                 <common_name>Yeast</common_name>
2142                                                 <synonym>Saccharomyces castellii</synonym>
2143                                                 <rank>species</rank>
2144                                               </taxonomy>
2145                                             </clade>
2146                                             <clade>
2147                                               <taxonomy>
2148                                                 <id provider="uniprot">4932</id>
2149                                                 <code>YEAST</code>
2150                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>
2151                                                 <common_name>Baker&apos;s yeast</common_name>
2152                                                 <rank>species</rank>
2153                                               </taxonomy>
2154                                             </clade>
2155                                           </clade>
2156                                           <clade>
2157                                             <taxonomy>
2158                                               <id provider="uniprot">4905</id>
2159                                               <code>PICAN</code>
2160                                               <scientific_name>Pichia angusta</scientific_name>
2161                                               <common_name>Yeast</common_name>
2162                                               <synonym>Hansenula polymorpha</synonym>
2163                                               <rank>species</rank>
2164                                             </taxonomy>
2165                                           </clade>
2166                                         </clade>
2167                                         <clade>
2168                                           <name>Kluyveromyces &amp; Ashbya</name>
2169                                           <clade>
2170                                             <name>Kluyveromyces</name>
2171                                             <clade>
2172                                               <taxonomy>
2173                                                 <id provider="uniprot">28985</id>
2174                                                 <code>KLULA</code>
2175                                                 <scientific_name>Kluyveromyces lactis</scientific_name>
2176                                                 <common_name>Yeast</common_name>
2177                                                 <synonym>Candida sphaerica</synonym>
2178                                                 <rank>species</rank>
2179                                               </taxonomy>
2180                                             </clade>
2181                                             <clade>
2182                                               <taxonomy>
2183                                                 <id provider="uniprot">4914</id>
2184                                                 <code>KLUWA</code>
2185                                                 <scientific_name>Kluyveromyces waltii</scientific_name>
2186                                                 <common_name>Yeast</common_name>
2187                                                 <rank>species</rank>
2188                                               </taxonomy>
2189                                             </clade>
2190                                           </clade>
2191                                           <clade>
2192                                             <taxonomy>
2193                                               <id provider="uniprot">33169</id>
2194                                               <code>ASHGO</code>
2195                                               <scientific_name>Ashbya gossypii</scientific_name>
2196                                               <common_name>Yeast</common_name>
2197                                               <synonym>Eremothecium gossypii</synonym>
2198                                               <rank>species</rank>
2199                                             </taxonomy>
2200                                           </clade>
2201                                         </clade>
2202                                       </clade>
2203                                       <clade>
2204                                         <name>Candida &amp; Debaryomyces</name>
2205                                         <clade>
2206                                           <taxonomy>
2207                                             <id provider="uniprot">5475</id>
2208                                             <scientific_name>Candida</scientific_name>
2209                                             <rank>genus</rank>
2210                                           </taxonomy>
2211                                           <clade>
2212                                             <taxonomy>
2213                                               <id provider="uniprot">5476</id>
2214                                               <code>CANAL</code>
2215                                               <scientific_name>Candida albicans</scientific_name>
2216                                               <common_name>Yeast</common_name>
2217                                               <rank>species</rank>
2218                                             </taxonomy>
2219                                           </clade>
2220                                           <clade>
2221                                             <taxonomy>
2222                                               <id provider="uniprot">5482</id>
2223                                               <code>CANTR</code>
2224                                               <scientific_name>Candida tropicalis</scientific_name>
2225                                               <common_name>Yeast</common_name>
2226                                               <rank>species</rank>
2227                                             </taxonomy>
2228                                           </clade>
2229                                         </clade>
2230                                         <clade>
2231                                           <taxonomy>
2232                                             <id provider="uniprot">4959</id>
2233                                             <code>DEBHA</code>
2234                                             <scientific_name>Debaryomyces hansenii</scientific_name>
2235                                             <common_name>Yeast</common_name>
2236                                             <synonym>Torulaspora hansenii</synonym>
2237                                             <rank>species</rank>
2238                                           </taxonomy>
2239                                         </clade>
2240                                       </clade>
2241                                     </clade>
2242                                     <clade>
2243                                       <taxonomy>
2244                                         <id provider="uniprot">4952</id>
2245                                         <code>YARLI</code>
2246                                         <scientific_name>Yarrowia lipolytica</scientific_name>
2247                                         <synonym>Candida lipolytica</synonym>
2248                                         <rank>species</rank>
2249                                       </taxonomy>
2250                                     </clade>
2251                                   </clade>
2252                                 </clade>
2253                                 <clade>
2254                                   <taxonomy>
2255                                     <id provider="uniprot">451866</id>
2256                                     <scientific_name>Taphrinomycotina</scientific_name>
2257                                     <rank>subphylum</rank>
2258                                   </taxonomy>
2259                                   <clade>
2260                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2261                                     <clade>
2262                                       <taxonomy>
2263                                         <id provider="uniprot">4895</id>
2264                                         <scientific_name>Schizosaccharomyces</scientific_name>
2265                                         <rank>genus</rank>
2266                                       </taxonomy>
2267                                       <clade>
2268                                         <taxonomy>
2269                                           <id provider="uniprot">4897</id>
2270                                           <code>SCHJP</code>
2271                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2272                                           <common_name>Fission yeast</common_name>
2273                                           <rank>species</rank>
2274                                         </taxonomy>
2275                                       </clade>
2276                                       <clade>
2277                                         <taxonomy>
2278                                           <id provider="uniprot">4896</id>
2279                                           <code>SCHPO</code>
2280                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>
2281                                           <common_name>Fission yeast</common_name>
2282                                           <rank>species</rank>
2283                                         </taxonomy>
2284                                       </clade>
2285                                     </clade>
2286                                     <clade>
2287                                       <taxonomy>
2288                                         <id provider="uniprot">4754</id>
2289                                         <code>PNECA</code>
2290                                         <scientific_name>Pneumocystis carinii</scientific_name>
2291                                         <rank>species</rank>
2292                                       </taxonomy>
2293                                     </clade>
2294                                   </clade>
2295                                   <clade>
2296                                     <name>SAICOM</name>
2297                                     <taxonomy>
2298                                       <id provider="uniprot">5606</id>
2299                                       <scientific_name>Saitoella complicata</scientific_name>
2300                                       <rank>species</rank>
2301                                     </taxonomy>
2302                                   </clade>
2303                                 </clade>
2304                               </clade>
2305                               <clade>
2306                                 <taxonomy>
2307                                   <id provider="uniprot">5204</id>
2308                                   <scientific_name>Basidiomycota</scientific_name>
2309                                   <rank>phylum</rank>
2310                                 </taxonomy>
2311                                 <clade>
2312                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2313                                   <clade>
2314                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2315                                     <clade>
2316                                       <taxonomy>
2317                                         <id provider="uniprot">5302</id>
2318                                         <scientific_name>Agaricomycotina</scientific_name>
2319                                       </taxonomy>
2320                                       <clade>
2321                                         <taxonomy>
2322                                           <id provider="uniprot">155619</id>
2323                                           <scientific_name>Homobasidiomycetes</scientific_name>
2324                                           <rank>class</rank>
2325                                         </taxonomy>
2326                                         <reference doi="10.1098/rspb.2002.2123">
2327                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2328                                         </reference>
2329                                         <clade>
2330                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2331                                           <clade>
2332                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>
2333                                             <clade>
2334                                               <taxonomy>
2335                                                 <id provider="uniprot">452333</id>
2336                                                 <scientific_name>Agaricomycetidae</scientific_name>
2337                                                 <rank>subclass</rank>
2338                                               </taxonomy>
2339                                               <clade>
2340                                                 <name>Agaricales &amp; Boletales</name>
2341                                                 <clade>
2342                                                   <taxonomy>
2343                                                     <id provider="uniprot">5338</id>
2344                                                     <scientific_name>Agaricales</scientific_name>
2345                                                     <rank>order</rank>
2346                                                   </taxonomy>
2347                                                   <clade>
2348                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2349                                                     <clade>
2350                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2351                                                       <clade>
2352                                                         <name>Agaricus &amp; Coprinopsis</name>
2353                                                         <clade>
2354                                                           <name>AGABB</name>
2355                                                           <taxonomy>
2356                                                             <id provider="uniprot">192524</id>
2357                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2358                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2359                                                           </taxonomy>
2360                                                         </clade>
2361                                                         <clade>
2362                                                           <taxonomy>
2363                                                             <id provider="uniprot">5346</id>
2364                                                             <code>COPCI</code>
2365                                                             <scientific_name>Coprinopsis cinerea</scientific_name>
2366                                                             <common_name>Inky cap fungus</common_name>
2367                                                             <synonym>Hormographiella aspergillata</synonym>
2368                                                             <rank>species</rank>
2369                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2370                                                           </taxonomy>
2371                                                         </clade>
2372                                                       </clade>
2373                                                       <clade>
2374                                                         <taxonomy>
2375                                                           <id provider="uniprot">29883</id>
2376                                                           <code>LACBI</code>
2377                                                           <scientific_name>Laccaria bicolor</scientific_name>
2378                                                           <common_name>Bicoloured deceiver</common_name>
2379                                                           <synonym>Laccaria laccata var. bicolor</synonym>
2380                                                           <rank>species</rank>
2381                                                           <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>
2382                                                         </taxonomy>
2383                                                       </clade>
2384                                                     </clade>
2385                                                     <clade>
2386                                                       <name>GYMLUX</name>
2387                                                       <taxonomy>
2388                                                         <id provider="uniprot">206324</id>
2389                                                         <scientific_name>Gymnopus luxurians</scientific_name>
2390                                                         <rank>species</rank>
2391                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2392                                                       </taxonomy>
2393                                                     </clade>
2394                                                   </clade>
2395                                                   <clade>
2396                                                     <taxonomy>
2397                                                       <id provider="uniprot">5322</id>
2398                                                       <code>PLEOS</code>
2399                                                       <scientific_name>Pleurotus ostreatus</scientific_name>
2400                                                       <common_name>Oyster mushroom</common_name>
2401                                                       <synonym>White-rot fungus</synonym>
2402                                                       <rank>species</rank>
2403                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2404                                                     </taxonomy>
2405                                                   </clade>
2406                                                 </clade>
2407                                                 <clade>
2408                                                   <taxonomy>
2409                                                     <id provider="uniprot">68889</id>
2410                                                     <scientific_name>Boletales</scientific_name>
2411                                                     <synonym>Melanogastrales</synonym>
2412                                                     <synonym>Sclerodermatales</synonym>
2413                                                     <rank>order</rank>
2414                                                   </taxonomy>
2415                                                   <clade>
2416                                                     <taxonomy>
2417                                                       <id provider="uniprot">227334</id>
2418                                                       <scientific_name>Coniophorineae</scientific_name>
2419                                                       <rank>suborder</rank>
2420                                                     </taxonomy>
2421                                                     <clade>
2422                                                       <name>CONPUT</name>
2423                                                       <taxonomy>
2424                                                         <id provider="uniprot">80637</id>
2425                                                         <scientific_name>Coniophora puteana</scientific_name>
2426                                                         <authority>Schum. ex Fries</authority>
2427                                                         <common_name>cellar fungus</common_name>
2428                                                         <rank>species</rank>
2429                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2430                                                       </taxonomy>
2431                                                     </clade>
2432                                                     <clade>
2433                                                       <name>SERLAC</name>
2434                                                       <taxonomy>
2435                                                         <id provider="uniprot">85982</id>
2436                                                         <scientific_name>Serpula lacrymans</scientific_name>
2437                                                         <common_name>dry rot fungus</common_name>
2438                                                         <rank>species</rank>
2439                                                         <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
2440                                                       </taxonomy>
2441                                                     </clade>
2442                                                   </clade>
2443                                                   <clade>
2444                                                     <name>HYDPIN</name>
2445                                                     <taxonomy>
2446                                                       <id provider="uniprot">388859</id>
2447                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>
2448                                                       <common_name>Spiny dry rot fungus</common_name>
2449                                                       <rank>species</rank>
2450                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2451                                                     </taxonomy>
2452                                                   </clade>
2453                                                 </clade>
2454                                               </clade>
2455                                               <clade>
2456                                                 <name>JAAARG</name>
2457                                                 <taxonomy>
2458                                                   <id provider="uniprot">202697</id>
2459                                                   <scientific_name>Jaapia argillacea</scientific_name>
2460                                                   <rank>species</rank>
2461                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>
2462                                                 </taxonomy>
2463                                               </clade>
2464                                             </clade>
2465                                             <clade>
2466                                               <taxonomy>
2467                                                 <id provider="uniprot">104355</id>
2468                                                 <code>GLOTR</code>
2469                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>
2470                                                 <common_name>Brown rot fungus</common_name>
2471                                                 <rank>species</rank>
2472                                                 <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>
2473                                               </taxonomy>
2474                                             </clade>
2475                                           </clade>
2476                                           <clade>
2477                                             <taxonomy>
2478                                               <id provider="uniprot">5303</id>
2479                                               <scientific_name>Aphyllophorales</scientific_name>
2480                                               <authority>Gäum. (1926)</authority>
2481                                               <common_name>Shelf Fungi</common_name>
2482                                               <synonym>Polyporales</synonym>
2483                                               <rank>order</rank>
2484                                             </taxonomy>
2485                                             <clade>
2486                                               <taxonomy>
2487                                                 <id provider="uniprot">83233</id>
2488                                                 <scientific_name>Coriolaceae</scientific_name>
2489                                                 <rank>family</rank>
2490                                               </taxonomy>
2491                                               <reference doi="10.1017/S1477200005001623">
2492                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2493                                               </reference>
2494                                               <reference>
2495                                               </reference>
2496                                               <reference>
2497                                               </reference>
2498                                               <clade>
2499                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2500                                                 <clade>
2501                                                   <name>Antrodia clade</name>
2502                                                   <taxonomy>
2503                                                     <common_name>Antrodia clade</common_name>
2504                                                   </taxonomy>
2505                                                   <clade>
2506                                                     <name>FOMPIN</name>
2507                                                     <taxonomy>
2508                                                       <id provider="uniprot">40483</id>
2509                                                       <scientific_name>Fomitopsis pinicola</scientific_name>
2510                                                       <authority>P. Karst. 1881</authority>
2511                                                       <common_name>Red banded polypore</common_name>
2512                                                       <synonym>Fomes pinicola</synonym>
2513                                                       <rank>species</rank>
2514                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2515                                                     </taxonomy>
2516                                                   </clade>
2517                                                   <clade>
2518                                                     <name>POSPL</name>
2519                                                     <taxonomy>
2520                                                       <id provider="uniprot">104341</id>
2521                                                       <scientific_name>Postia placenta</scientific_name>
2522                                                       <rank>species</rank>
2523                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2524                                                     </taxonomy>
2525                                                   </clade>
2526                                                 </clade>
2527                                                 <clade>
2528                                                   <name>core polyporoid clade</name>
2529                                                   <taxonomy>
2530                                                     <common_name>core polyporoid clade</common_name>
2531                                                   </taxonomy>
2532                                                   <clade>
2533                                                     <taxonomy>
2534                                                       <id provider="uniprot">5325</id>
2535                                                       <code>TRAVE</code>
2536                                                       <scientific_name>Trametes versicolor</scientific_name>
2537                                                       <authority>(L.) Lloyd 1921</authority>
2538                                                       <common_name>White-rot fungus</common_name>
2539                                                       <synonym>Coriolus versicolor</synonym>
2540                                                       <synonym>Bjerkandera versicolor</synonym>
2541                                                       <rank>species</rank>
2542                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2543                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2544                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2545                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2546                                                     </taxonomy>
2547                                                   </clade>
2548                                                   <clade>
2549                                                     <name>WOLCOC</name>
2550                                                     <taxonomy>
2551                                                       <id provider="uniprot">81056</id>
2552                                                       <scientific_name>Wolfiporia cocos</scientific_name>
2553                                                       <rank>species</rank>
2554                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2555                                                     </taxonomy>
2556                                                   </clade>
2557                                                 </clade>
2558                                               </clade>
2559                                               <clade>
2560                                                 <taxonomy>
2561                                                   <id provider="uniprot">42742</id>
2562                                                   <code>CERSU</code>
2563                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2564                                                   <rank>species</rank>
2565                                                 </taxonomy>
2566                                               </clade>
2567                                             </clade>
2568                                             <clade>
2569                                               <name>DICSQU</name>
2570                                               <taxonomy>
2571                                                 <id provider="uniprot">114155</id>
2572                                                 <scientific_name>Dichomitus squalens</scientific_name>
2573                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>
2574                                                 <common_name>Red rot</common_name>
2575                                                 <synonym>Polyporus anceps</synonym>
2576                                                 <rank>species</rank>
2577                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2578                                               </taxonomy>
2579                                             </clade>
2580                                           </clade>
2581                                         </clade>
2582                                         <clade>
2583                                           <taxonomy>
2584                                             <id provider="uniprot">13563</id>
2585                                             <code>HETAN</code>
2586                                             <scientific_name>Heterobasidion annosum</scientific_name>
2587                                             <common_name>Root rot fungus</common_name>
2588                                             <rank>species</rank>
2589                                           </taxonomy>
2590                                         </clade>
2591                                       </clade>
2592                                       <clade>
2593                                         <taxonomy>
2594                                           <id provider="uniprot">5215</id>
2595                                           <scientific_name>Tremellaceae</scientific_name>
2596                                           <rank>family</rank>
2597                                         </taxonomy>
2598                                         <clade>
2599                                           <taxonomy>
2600                                             <id provider="uniprot">5207</id>
2601                                             <code>CRYNE</code>
2602                                             <scientific_name>Cryptococcus neoformans</scientific_name>
2603                                             <synonym>Filobasidiella neoformans</synonym>
2604                                             <rank>species</rank>
2605                                           </taxonomy>
2606                                         </clade>
2607                                         <clade>
2608                                           <taxonomy>
2609                                             <id provider="eol">1029985</id>
2610                                             <code>TREME</code>
2611                                             <scientific_name>Tremella mesenterica</scientific_name>
2612                                             <authority>Pers. 1800</authority>
2613                                             <common_name>Jelly fungus</common_name>
2614                                             <synonym>Yellow Brain</synonym>
2615                                             <synonym>Tremella lutescens</synonym>
2616                                             <rank>species</rank>
2617                                           </taxonomy>
2618                                         </clade>
2619                                       </clade>
2620                                     </clade>
2621                                     <clade>
2622                                       <taxonomy>
2623                                         <id provider="uniprot">452284</id>
2624                                         <scientific_name>Ustilaginomycotina</scientific_name>
2625                                         <rank>subphylum</rank>
2626                                       </taxonomy>
2627                                       <clade>
2628                                         <taxonomy>
2629                                           <id provider="uniprot">425265</id>
2630                                           <code>MALGO</code>
2631                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2632                                           <common_name>Dandruff-associated fungus</common_name>
2633                                         </taxonomy>
2634                                       </clade>
2635                                       <clade>
2636                                         <taxonomy>
2637                                           <id provider="uniprot">5270</id>
2638                                           <code>USTMA</code>
2639                                           <scientific_name>Ustilago maydis</scientific_name>
2640                                           <common_name>Smut fungus</common_name>
2641                                           <rank>species</rank>
2642                                         </taxonomy>
2643                                       </clade>
2644                                     </clade>
2645                                   </clade>
2646                                   <clade>
2647                                     <taxonomy>
2648                                       <id provider="uniprot">29000</id>
2649                                       <scientific_name>Pucciniomycotina</scientific_name>
2650                                       <rank>subphylum</rank>
2651                                     </taxonomy>
2652                                     <clade>
2653                                       <taxonomy>
2654                                         <id provider="uniprot">5258</id>
2655                                         <scientific_name>Pucciniales</scientific_name>
2656                                         <common_name>rusts</common_name>
2657                                         <rank>order</rank>
2658                                       </taxonomy>
2659                                       <clade>
2660                                         <taxonomy>
2661                                           <id provider="eol">156696</id>
2662                                           <code>MELLP</code>
2663                                           <scientific_name>Melampsora laricis-populina</scientific_name>
2664                                           <authority>Kleb. 1902</authority>
2665                                           <synonym>Melampsora larici-populina</synonym>
2666                                           <synonym>Melampsora laricipopulina</synonym>
2667                                           <rank>species</rank>
2668                                         </taxonomy>
2669                                       </clade>
2670                                       <clade>
2671                                         <taxonomy>
2672                                           <id provider="eol">1029947</id>
2673                                           <code>PUCGR</code>
2674                                           <scientific_name>Puccinia graminis</scientific_name>
2675                                           <authority>Pers. 1794</authority>
2676                                           <common_name>Black stem rust fungus</common_name>
2677                                           <synonym>Wheat rust</synonym>
2678                                           <rank>species</rank>
2679                                         </taxonomy>
2680                                       </clade>
2681                                     </clade>
2682                                     <clade>
2683                                       <taxonomy>
2684                                         <id provider="uniprot">89013</id>
2685                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
2686                                       </taxonomy>
2687                                       <clade>
2688                                         <taxonomy>
2689                                           <id provider="uniprot">29898</id>
2690                                           <code>RHOGR</code>
2691                                           <scientific_name>Rhodotorula graminis</scientific_name>
2692                                           <common_name>Yeast</common_name>
2693                                           <rank>species</rank>
2694                                         </taxonomy>
2695                                       </clade>
2696                                       <clade>
2697                                         <name>SPORO</name>
2698                                         <taxonomy>
2699                                           <id provider="eol">1013696</id>
2700                                           <scientific_name>Sporobolomyces roseus</scientific_name>
2701                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>
2702                                           <rank>species</rank>
2703                                         </taxonomy>
2704                                       </clade>
2705                                     </clade>
2706                                   </clade>
2707                                 </clade>
2708                                 <clade>
2709                                   <taxonomy>
2710                                     <id provider="uniprot">148960</id>
2711                                     <code>WALSE</code>
2712                                     <scientific_name>Wallemia sebi</scientific_name>
2713                                     <rank>species</rank>
2714                                   </taxonomy>
2715                                 </clade>
2716                               </clade>
2717                             </clade>
2718                             <clade>
2719                               <taxonomy>
2720                                 <id provider="uniprot">451507</id>
2721                                 <scientific_name>Mucoromycotina</scientific_name>
2722                                 <rank>subphylum</rank>
2723                               </taxonomy>
2724                               <clade>
2725                                 <taxonomy>
2726                                   <id provider="uniprot">34489</id>
2727                                   <scientific_name>Mucoraceae</scientific_name>
2728                                   <rank>family</rank>
2729                                 </taxonomy>
2730                                 <clade>
2731                                   <taxonomy>
2732                                     <id provider="uniprot">36080</id>
2733                                     <code>MUCCI</code>
2734                                     <scientific_name>Mucor circinelloides</scientific_name>
2735                                     <synonym>Mucor griseo-roseus</synonym>
2736                                     <rank>species</rank>
2737                                   </taxonomy>
2738                                 </clade>
2739                                 <clade>
2740                                   <taxonomy>
2741                                     <id provider="uniprot">64495</id>
2742                                     <code>RHIOR</code>
2743                                     <scientific_name>Rhizopus oryzae</scientific_name>
2744                                     <synonym>Rhizopus delemar</synonym>
2745                                     <rank>species</rank>
2746                                   </taxonomy>
2747                                 </clade>
2748                               </clade>
2749                               <clade>
2750                                 <name>MORVER</name>
2751                                 <taxonomy>
2752                                   <id provider="uniprot">78898</id>
2753                                   <scientific_name>Mortierella verticillata</scientific_name>
2754                                   <rank>species</rank>
2755                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
2756                                 </taxonomy>
2757                               </clade>
2758                             </clade>
2759                           </clade>
2760                           <clade>
2761                             <name>COEREV</name>
2762                             <taxonomy>
2763                               <id provider="uniprot">61392</id>
2764                               <scientific_name>Coemansia reversa</scientific_name>
2765                               <rank>species</rank>
2766                             </taxonomy>
2767                           </clade>
2768                         </clade>
2769                         <clade>
2770                           <taxonomy>
2771                             <id provider="uniprot">28583</id>
2772                             <code>ALLMA</code>
2773                             <scientific_name>Allomyces macrogynus</scientific_name>
2774                             <rank>species</rank>
2775                           </taxonomy>
2776                         </clade>
2777                       </clade>
2778                       <clade>
2779                         <taxonomy>
2780                           <id provider="uniprot">4761</id>
2781                           <scientific_name>Chytridiomycota</scientific_name>
2782                           <common_name>chytrids</common_name>
2783                           <synonym>Mastigomycotina</synonym>
2784                           <rank>phylum</rank>
2785                         </taxonomy>
2786                         <clade>
2787                           <taxonomy>
2788                             <id provider="uniprot">451435</id>
2789                             <scientific_name>Chytridiomycetes</scientific_name>
2790                             <rank>class</rank>
2791                           </taxonomy>
2792                           <clade>
2793                             <taxonomy>
2794                               <id provider="uniprot">109871</id>
2795                               <code>BATDE</code>
2796                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
2797                               <common_name>Frog chytrid fungus</common_name>
2798                               <rank>species</rank>
2799                             </taxonomy>
2800                           </clade>
2801                           <clade>
2802                             <taxonomy>
2803                               <id provider="uniprot">109760</id>
2804                               <code>SPIPN</code>
2805                               <scientific_name>Spizellomyces punctatus</scientific_name>
2806                               <rank>species</rank>
2807                             </taxonomy>
2808                           </clade>
2809                         </clade>
2810                         <clade>
2811                           <name>GONPRO</name>
2812                           <taxonomy>
2813                             <id provider="eol">157984</id>
2814                             <scientific_name>Gonapodya prolifera</scientific_name>
2815                             <authority>A. Fisch. 1892</authority>
2816                             <rank>species</rank>
2817                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
2818                           </taxonomy>
2819                         </clade>
2820                       </clade>
2821                     </clade>
2822                     <clade>
2823                       <name>PIRSPE</name>
2824                       <taxonomy>
2825                         <id provider="uniprot">73868</id>
2826                         <scientific_name>Piromyces sp. E2</scientific_name>
2827                         <rank>species</rank>
2828                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
2829                       </taxonomy>
2830                     </clade>
2831                   </clade>
2832                   <clade>
2833                     <taxonomy>
2834                       <id provider="uniprot">6035</id>
2835                       <code>ENCCU</code>
2836                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
2837                       <common_name>Microsporidian parasite</common_name>
2838                       <rank>species</rank>
2839                     </taxonomy>
2840                   </clade>
2841                 </clade>
2842                 <clade>
2843                   <name>Fonticula &amp; Nucleariidae</name>
2844                   <reference doi="10.1093/molbev/msp185">
2845                   </reference>
2846                   <clade>
2847                     <name>FONALB</name>
2848                     <taxonomy>
2849                       <id provider="uniprot">691883</id>
2850                       <scientific_name>Fonticula alba</scientific_name>
2851                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
2852                       <rank>species</rank>
2853                     </taxonomy>
2854                   </clade>
2855                   <clade>
2856                     <name>NUCSIM</name>
2857                     <taxonomy>
2858                       <id provider="uniprot">154970</id>
2859                       <scientific_name>Nuclearia simplex</scientific_name>
2860                       <rank>species</rank>
2861                     </taxonomy>
2862                   </clade>
2863                 </clade>
2864               </clade>
2865             </clade>
2866             <clade>
2867               <name>THETRA</name>
2868               <taxonomy>
2869                 <id provider="uniprot">529818</id>
2870                 <scientific_name>Thecamonas trahens</scientific_name>
2871                 <rank>species</rank>
2872               </taxonomy>
2873             </clade>
2874           </clade>
2875           <clade>
2876             <name>Amoebozoa</name>
2877             <taxonomy>
2878               <id provider="uniprot">554915</id>
2879               <scientific_name>Amoebozoa</scientific_name>
2880             </taxonomy>
2881             <clade>
2882               <name>Dictyostelium</name>
2883               <taxonomy>
2884                 <id provider="uniprot">5782</id>
2885                 <scientific_name>Dictyostelium</scientific_name>
2886                 <rank>genus</rank>
2887               </taxonomy>
2888               <clade>
2889                 <taxonomy>
2890                   <id provider="uniprot">44689</id>
2891                   <code>DICDI</code>
2892                   <scientific_name>Dictyostelium discoideum</scientific_name>
2893                   <common_name>Slime mold</common_name>
2894                   <rank>species</rank>
2895                 </taxonomy>
2896               </clade>
2897               <clade>
2898                 <taxonomy>
2899                   <id provider="uniprot">5786</id>
2900                   <code>DICPU</code>
2901                   <scientific_name>Dictyostelium purpureum</scientific_name>
2902                   <common_name>Slime mold</common_name>
2903                   <rank>species</rank>
2904                 </taxonomy>
2905               </clade>
2906             </clade>
2907             <clade>
2908               <taxonomy>
2909                 <id provider="uniprot">5759</id>
2910                 <code>ENTHI</code>
2911                 <scientific_name>Entamoeba histolytica</scientific_name>
2912                 <rank>species</rank>
2913               </taxonomy>
2914             </clade>
2915           </clade>
2916         </clade>
2917         <clade>
2918           <name>Bikonta</name>
2919           <reference doi="10.1099/ijs.0.63216-0">
2920           </reference>
2921           <clade>
2922             <name>Corticata</name>
2923             <clade>
2924               <name>Archaeplastida</name>
2925               <clade>
2926                 <taxonomy>
2927                   <id provider="uniprot">33090</id>
2928                   <scientific_name>Viridiplantae</scientific_name>
2929                   <common_name>green plants</common_name>
2930                   <rank>kingdom</rank>
2931                 </taxonomy>
2932                 <clade>
2933                   <taxonomy>
2934                     <id provider="uniprot">3193</id>
2935                     <scientific_name>Embryophyta</scientific_name>
2936                   </taxonomy>
2937                   <clade>
2938                     <taxonomy>
2939                       <id provider="uniprot">58023</id>
2940                       <scientific_name>Tracheophyta</scientific_name>
2941                     </taxonomy>
2942                     <clade>
2943                       <taxonomy>
2944                         <id provider="uniprot">3398</id>
2945                         <scientific_name>Magnoliophyta</scientific_name>
2946                         <common_name>flowering plants</common_name>
2947                         <synonym>Angiospermae</synonym>
2948                       </taxonomy>
2949                       <clade>
2950                         <taxonomy>
2951                           <id provider="uniprot">71240</id>
2952                           <scientific_name>eudicotyledons</scientific_name>
2953                         </taxonomy>
2954                         <clade>
2955                           <taxonomy>
2956                             <id provider="uniprot">91827</id>
2957                             <scientific_name>core eudicotyledons</scientific_name>
2958                           </taxonomy>
2959                           <clade>
2960                             <taxonomy>
2961                               <id provider="uniprot">71275</id>
2962                               <scientific_name>rosids</scientific_name>
2963                               <rank>subclass</rank>
2964                             </taxonomy>
2965                             <clade>
2966                               <name>fabids &amp; malvids</name>
2967                               <clade>
2968                                 <taxonomy>
2969                                   <id provider="uniprot">91835</id>
2970                                   <scientific_name>fabids</scientific_name>
2971                                 </taxonomy>
2972                                 <clade>
2973                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
2974                                   <clade>
2975                                     <name>Rosales &amp; Cucurbitales</name>
2976                                     <clade>
2977                                       <taxonomy>
2978                                         <id provider="uniprot">3745</id>
2979                                         <scientific_name>Rosaceae</scientific_name>
2980                                         <rank>family</rank>
2981                                       </taxonomy>
2982                                       <clade>
2983                                         <taxonomy>
2984                                           <id provider="uniprot">57918</id>
2985                                           <code>FRAVE</code>
2986                                           <scientific_name>Fragaria vesca</scientific_name>
2987                                           <common_name>Woodland strawberry</common_name>
2988                                           <synonym>Fragaria vesca L.</synonym>
2989                                           <synonym>European strawberry</synonym>
2990                                           <synonym>alpine strawberry</synonym>
2991                                           <rank>species</rank>
2992                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
2993                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
2994                                         </taxonomy>
2995                                       </clade>
2996                                       <clade>
2997                                         <taxonomy>
2998                                           <id provider="uniprot">3760</id>
2999                                           <code>PRUPE</code>
3000                                           <scientific_name>Prunus persica</scientific_name>
3001                                           <common_name>Peach</common_name>
3002                                           <synonym>Persica vulgaris</synonym>
3003                                           <synonym>Amygdalus persica</synonym>
3004                                           <rank>species</rank>
3005                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3006                                         </taxonomy>
3007                                       </clade>
3008                                     </clade>
3009                                     <clade>
3010                                       <taxonomy>
3011                                         <id provider="uniprot">3659</id>
3012                                         <code>CUCSA</code>
3013                                         <scientific_name>Cucumis sativus</scientific_name>
3014                                         <common_name>Cucumber</common_name>
3015                                         <rank>species</rank>
3016                                       </taxonomy>
3017                                     </clade>
3018                                   </clade>
3019                                   <clade>
3020                                     <taxonomy>
3021                                       <id provider="uniprot">3814</id>
3022                                       <scientific_name>Papilionoideae</scientific_name>
3023                                       <rank>subfamily</rank>
3024                                     </taxonomy>
3025                                     <clade>
3026                                       <taxonomy>
3027                                         <id provider="uniprot">3847</id>
3028                                         <code>SOYBN</code>
3029                                         <scientific_name>Glycine max</scientific_name>
3030                                         <authority>cv. Wye</authority>
3031                                         <common_name>Soybean</common_name>
3032                                         <synonym>Glycine hispida</synonym>
3033                                         <rank>species</rank>
3034                                       </taxonomy>
3035                                     </clade>
3036                                     <clade>
3037                                       <taxonomy>
3038                                         <id provider="uniprot">3880</id>
3039                                         <code>MEDTR</code>
3040                                         <scientific_name>Medicago truncatula</scientific_name>
3041                                         <common_name>Barrel medic</common_name>
3042                                         <synonym>Medicago tribuloides</synonym>
3043                                         <rank>species</rank>
3044                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3045                                       </taxonomy>
3046                                     </clade>
3047                                   </clade>
3048                                 </clade>
3049                                 <clade>
3050                                   <taxonomy>
3051                                     <id provider="uniprot">3646</id>
3052                                     <scientific_name>Malpighiales</scientific_name>
3053                                     <rank>order</rank>
3054                                   </taxonomy>
3055                                   <clade>
3056                                     <taxonomy>
3057                                       <id provider="uniprot">3977</id>
3058                                       <scientific_name>Euphorbiaceae</scientific_name>
3059                                       <rank>family</rank>
3060                                     </taxonomy>
3061                                     <clade>
3062                                       <taxonomy>
3063                                         <id provider="uniprot">3983</id>
3064                                         <code>MANES</code>
3065                                         <scientific_name>Manihot esculenta</scientific_name>
3066                                         <common_name>Tapioca</common_name>
3067                                         <synonym>Jatropha manihot</synonym>
3068                                         <rank>species</rank>
3069                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3070                                       </taxonomy>
3071                                     </clade>
3072                                     <clade>
3073                                       <taxonomy>
3074                                         <id provider="uniprot">3988</id>
3075                                         <code>RICCO</code>
3076                                         <scientific_name>Ricinus communis</scientific_name>
3077                                         <common_name>Castor bean</common_name>
3078                                         <synonym>Ricinus sanguineus</synonym>
3079                                         <rank>species</rank>
3080                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3081                                       </taxonomy>
3082                                     </clade>
3083                                   </clade>
3084                                   <clade>
3085                                     <taxonomy>
3086                                       <id provider="uniprot">3694</id>
3087                                       <code>POPTR</code>
3088                                       <scientific_name>Populus trichocarpa</scientific_name>
3089                                       <common_name>Western balsam poplar</common_name>
3090                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3091                                       <rank>species</rank>
3092                                     </taxonomy>
3093                                   </clade>
3094                                 </clade>
3095                               </clade>
3096                               <clade>
3097                                 <taxonomy>
3098                                   <id provider="uniprot">91836</id>
3099                                   <scientific_name>malvids</scientific_name>
3100                                 </taxonomy>
3101                                 <clade>
3102                                   <name>Brassicales &amp; Sapindales</name>
3103                                   <clade>
3104                                     <taxonomy>
3105                                       <id provider="uniprot">3699</id>
3106                                       <scientific_name>Brassicales</scientific_name>
3107                                       <rank>order</rank>
3108                                     </taxonomy>
3109                                     <clade>
3110                                       <taxonomy>
3111                                         <id provider="uniprot">3700</id>
3112                                         <scientific_name>Brassicaceae</scientific_name>
3113                                         <rank>family</rank>
3114                                       </taxonomy>
3115                                       <clade>
3116                                         <taxonomy>
3117                                           <id provider="uniprot">3701</id>
3118                                           <scientific_name>Arabidopsis</scientific_name>
3119                                           <rank>genus</rank>
3120                                         </taxonomy>
3121                                         <clade>
3122                                           <taxonomy>
3123                                             <id provider="uniprot">59689</id>
3124                                             <code>ARALY</code>
3125                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3126                                             <common_name>Lyre-leaved rock-cress</common_name>
3127                                             <rank>species</rank>
3128                                           </taxonomy>
3129                                         </clade>
3130                                         <clade>
3131                                           <taxonomy>
3132                                             <id provider="uniprot">3702</id>
3133                                             <code>ARATH</code>
3134                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3135                                             <common_name>Mouse-ear cress</common_name>
3136                                             <rank>species</rank>
3137                                           </taxonomy>
3138                                         </clade>
3139                                       </clade>
3140                                       <clade>
3141                                         <taxonomy>
3142                                           <id provider="uniprot">98038</id>
3143                                           <code>THEHA</code>
3144                                           <scientific_name>Thellungiella halophila</scientific_name>
3145                                           <common_name>Salt cress</common_name>
3146                                           <rank>species</rank>
3147                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3148                                         </taxonomy>
3149                                       </clade>
3150                                     </clade>
3151                                     <clade>
3152                                       <taxonomy>
3153                                         <id provider="uniprot">3649</id>
3154                                         <code>CARPA</code>
3155                                         <scientific_name>Carica papaya</scientific_name>
3156                                         <common_name>Papaya</common_name>
3157                                         <rank>species</rank>
3158                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3159                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3160                                       </taxonomy>
3161                                     </clade>
3162                                   </clade>
3163                                   <clade>
3164                                     <taxonomy>
3165                                       <id provider="uniprot">2706</id>
3166                                       <scientific_name>Citrus</scientific_name>
3167                                       <rank>genus</rank>
3168                                     </taxonomy>
3169                                     <clade>
3170                                       <name>CITCLE</name>
3171                                       <taxonomy>
3172                                         <id provider="uniprot">85681</id>
3173                                         <scientific_name>Citrus clementina</scientific_name>
3174                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3175                                         <rank>species</rank>
3176                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3177                                       </taxonomy>
3178                                     </clade>
3179                                     <clade>
3180                                       <taxonomy>
3181                                         <id provider="uniprot">2711</id>
3182                                         <code>CITSI</code>
3183                                         <scientific_name>Citrus sinensis</scientific_name>
3184                                         <common_name>Sweet orange</common_name>
3185                                         <synonym>Citrus x sinensis</synonym>
3186                                         <synonym>Citrus aurantium var. sinensis</synonym>
3187                                         <rank>species</rank>
3188                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3189                                       </taxonomy>
3190                                     </clade>
3191                                   </clade>
3192                                 </clade>
3193                                 <clade>
3194                                   <taxonomy>
3195                                     <id provider="uniprot">71139</id>
3196                                     <code>EUCGR</code>
3197                                     <scientific_name>Eucalyptus grandis</scientific_name>
3198                                     <common_name>Flooded gum</common_name>
3199                                     <rank>species</rank>
3200                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3201                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3202                                   </taxonomy>
3203                                 </clade>
3204                               </clade>
3205                             </clade>
3206                             <clade>
3207                               <taxonomy>
3208                                 <id provider="eol">582304</id>
3209                                 <code>VITVI</code>
3210                                 <scientific_name>Vitis vinifera</scientific_name>
3211                                 <common_name>Grape</common_name>
3212                                 <rank>species</rank>
3213                               </taxonomy>
3214                             </clade>
3215                           </clade>
3216                           <clade>
3217                             <taxonomy>
3218                               <id provider="uniprot">91888</id>
3219                               <scientific_name>lamiids</scientific_name>
3220                             </taxonomy>
3221                             <clade>
3222                               <taxonomy>
3223                                 <id provider="uniprot">4070</id>
3224                                 <scientific_name>Solanaceae</scientific_name>
3225                                 <rank>family</rank>
3226                               </taxonomy>
3227                               <clade>
3228                                 <taxonomy>
3229                                   <id provider="uniprot">4107</id>
3230                                   <scientific_name>Solanum</scientific_name>
3231                                   <rank>genus</rank>
3232                                 </taxonomy>
3233                                 <clade>
3234                                   <taxonomy>
3235                                     <id provider="uniprot">49274</id>
3236                                     <scientific_name>Lycopersicon</scientific_name>
3237                                     <rank>subgenus</rank>
3238                                   </taxonomy>
3239                                   <clade>
3240                                     <taxonomy>
3241                                       <id provider="uniprot">4081</id>
3242                                       <code>SOLLC</code>
3243                                       <scientific_name>Solanum lycopersicum</scientific_name>
3244                                       <common_name>Tomato</common_name>
3245                                       <synonym>Lycopersicon esculentum</synonym>
3246                                       <rank>species</rank>
3247                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3248                                     </taxonomy>
3249                                   </clade>
3250                                   <clade>
3251                                     <taxonomy>
3252                                       <id provider="uniprot">4084</id>
3253                                       <code>SOLPI</code>
3254                                       <scientific_name>Solanum pimpinellifolium</scientific_name>
3255                                       <common_name>Currant tomato</common_name>
3256                                       <synonym>Lycopersicon pimpinellifolium</synonym>
3257                                       <rank>species</rank>
3258                                       <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>
3259                                     </taxonomy>
3260                                   </clade>
3261                                 </clade>
3262                                 <clade>
3263                                   <taxonomy>
3264                                     <id provider="4113">uniprot</id>
3265                                     <code>SOLTU</code>
3266                                     <scientific_name>Solanum tuberosum</scientific_name>
3267                                     <common_name>Potato</common_name>
3268                                     <rank>species</rank>
3269                                     <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>
3270                                   </taxonomy>
3271                                 </clade>
3272                               </clade>
3273                               <clade>
3274                                 <taxonomy>
3275                                   <id provider="uniprot">4097</id>
3276                                   <code>TOBAC</code>
3277                                   <scientific_name>Nicotiana tabacum</scientific_name>
3278                                   <common_name>Common tobacco</common_name>
3279                                   <rank>species</rank>
3280                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3281                                 </taxonomy>
3282                               </clade>
3283                             </clade>
3284                             <clade>
3285                               <taxonomy>
3286                                 <id provider="uniprot">4155</id>
3287                                 <code>MIMGU</code>
3288                                 <scientific_name>Mimulus guttatus</scientific_name>
3289                                 <common_name>Yellow monkey flower</common_name>
3290                                 <synonym>Yellow monkey flower</synonym>
3291                                 <rank>species</rank>
3292                               </taxonomy>
3293                             </clade>
3294                           </clade>
3295                         </clade>
3296                         <clade>
3297                           <taxonomy>
3298                             <id provider="uniprot">218851</id>
3299                             <code>AQUCA</code>
3300                             <scientific_name>Aquilegia caerulea</scientific_name>
3301                             <authority>E.James</authority>
3302                             <common_name>Rocky mountain columbine</common_name>
3303                             <synonym>Aquilegia coerulea</synonym>
3304                             <rank>species</rank>
3305                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3306                           </taxonomy>
3307                         </clade>
3308                       </clade>
3309                       <clade>
3310                         <taxonomy>
3311                           <id provider="uniprot">4479</id>
3312                           <scientific_name>Poaceae</scientific_name>
3313                           <common_name>grass family</common_name>
3314                           <synonym>Gramineae</synonym>
3315                           <rank>family</rank>
3316                         </taxonomy>
3317                         <clade>
3318                           <taxonomy>
3319                             <id provider="uniprot">147369</id>
3320                             <scientific_name>Panicoideae</scientific_name>
3321                             <authority>Link, 1827</authority>
3322                             <synonym>Centothecoideae</synonym>
3323                             <rank>subfamily</rank>
3324                           </taxonomy>
3325                           <clade>
3326                             <taxonomy>
3327                               <id provider="uniprot">147429</id>
3328                               <scientific_name>Andropogoneae</scientific_name>
3329                               <authority>Dumort., 1824</authority>
3330                               <rank>tribe</rank>
3331                             </taxonomy>
3332                             <clade>
3333                               <taxonomy>
3334                                 <id provider="uniprot">4558</id>
3335                                 <code>SORBI</code>
3336                                 <scientific_name>Sorghum bicolor</scientific_name>
3337                                 <common_name>Sorghum</common_name>
3338                                 <synonym>Sorghum vulgare</synonym>
3339                                 <rank>species</rank>
3340                               </taxonomy>
3341                             </clade>
3342                             <clade>
3343                               <taxonomy>
3344                                 <id provider="uniprot">4577</id>
3345                                 <code>MAIZE</code>
3346                                 <scientific_name>Zea mays</scientific_name>
3347                                 <common_name>Maize</common_name>
3348                                 <rank>species</rank>
3349                               </taxonomy>
3350                             </clade>
3351                           </clade>
3352                           <clade>
3353                             <taxonomy>
3354                               <id provider="uniprot">147428</id>
3355                               <scientific_name>Paniceae</scientific_name>
3356                               <rank>tribe</rank>
3357                             </taxonomy>
3358                             <clade>
3359                               <name>PANVIR</name>
3360                               <taxonomy>
3361                                 <id provider="uniprot">38727</id>
3362                                 <scientific_name>Panicum virgatum</scientific_name>
3363                                 <common_name>switchgrass</common_name>
3364                                 <rank>species</rank>
3365                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3366                               </taxonomy>
3367                             </clade>
3368                             <clade>
3369                               <taxonomy>
3370                                 <id provider="uniprot">4555</id>
3371                                 <code>SETIT</code>
3372                                 <scientific_name>Setaria italica</scientific_name>
3373                                 <common_name>Foxtail millet</common_name>
3374                                 <synonym>Panicum italicum</synonym>
3375                                 <rank>species</rank>
3376                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3377                               </taxonomy>
3378                             </clade>
3379                           </clade>
3380                         </clade>
3381                         <clade>
3382                           <taxonomy>
3383                             <id provider="uniprot">359160</id>
3384                             <scientific_name>BEP clade</scientific_name>
3385                           </taxonomy>
3386                           <clade>
3387                             <taxonomy>
3388                               <id provider="uniprot">4527</id>
3389                               <scientific_name>Oryza</scientific_name>
3390                               <rank>genus</rank>
3391                             </taxonomy>
3392                             <clade>
3393                               <taxonomy>
3394                                 <id provider="uniprot">4530</id>
3395                                 <code>ORYSA</code>
3396                                 <scientific_name>Oryza sativa</scientific_name>
3397                                 <common_name>Rice</common_name>
3398                                 <rank>species</rank>
3399                               </taxonomy>
3400                             </clade>
3401                             <clade>
3402                               <taxonomy>
3403                                 <id provider="uniprot">39947</id>
3404                                 <code>ORYSJ</code>
3405                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3406                                 <common_name>Rice</common_name>
3407                               </taxonomy>
3408                             </clade>
3409                           </clade>
3410                           <clade>
3411                             <taxonomy>
3412                               <id provider="uniprot">15368</id>
3413                               <code>BRADI</code>
3414                               <scientific_name>Brachypodium distachyon</scientific_name>
3415                               <common_name>Purple false brome</common_name>
3416                               <synonym>Trachynia distachya</synonym>
3417                               <rank>species</rank>
3418                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3419                             </taxonomy>
3420                           </clade>
3421                         </clade>
3422                       </clade>
3423                     </clade>
3424                     <clade>
3425                       <taxonomy>
3426                         <id provider="uniprot">34167</id>
3427                         <code>SELMO</code>
3428                         <scientific_name>Selaginella mollis</scientific_name>
3429                         <common_name>Moss</common_name>
3430                         <rank>species</rank>
3431                       </taxonomy>
3432                     </clade>
3433                   </clade>
3434                   <clade>
3435                     <taxonomy>
3436                       <id provider="uniprot">145481</id>
3437                       <code>PHYPA</code>
3438                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3439                       <common_name>Moss</common_name>
3440                       <rank>subspecies</rank>
3441                     </taxonomy>
3442                   </clade>
3443                 </clade>
3444                 <clade>
3445                   <taxonomy>
3446                     <id provider="uniprot">3041</id>
3447                     <scientific_name>Chlorophyta</scientific_name>
3448                     <rank>phylum</rank>
3449                   </taxonomy>
3450                   <clade>
3451                     <taxonomy>
3452                       <id provider="uniprot">13792</id>
3453                       <scientific_name>Mamiellales</scientific_name>
3454                       <rank>order</rank>
3455                     </taxonomy>
3456                     <clade>
3457                       <taxonomy>
3458                         <id provider="uniprot">70447</id>
3459                         <scientific_name>Ostreococcus</scientific_name>
3460                         <rank>genus</rank>
3461                       </taxonomy>
3462                       <clade>
3463                         <taxonomy>
3464                           <id provider="uniprot">436017</id>
3465                           <code>OSTLU</code>
3466                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3467                         </taxonomy>
3468                       </clade>
3469                       <clade>
3470                         <taxonomy>
3471                           <id provider="uniprot">70448</id>
3472                           <code>OSTTA</code>
3473                           <scientific_name>Ostreococcus tauri</scientific_name>
3474                           <rank>species</rank>
3475                         </taxonomy>
3476                       </clade>
3477                     </clade>
3478                     <clade>
3479                       <taxonomy>
3480                         <id provider="uniprot">38832</id>
3481                         <scientific_name>Micromonas</scientific_name>
3482                         <rank>genus</rank>
3483                       </taxonomy>
3484                       <clade>
3485                         <taxonomy>
3486                           <id provider="uniprot">564608</id>
3487                           <code>MICPC</code>
3488                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3489                           <common_name>Picoplanktonic green alga</common_name>
3490                         </taxonomy>
3491                       </clade>
3492                       <clade>
3493                         <taxonomy>
3494                           <id provider="uniprot">296587</id>
3495                           <code>MICSR</code>
3496                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3497                           <common_name>Picoplanktonic green alga</common_name>
3498                           <synonym>Micromonas sp. RCC299</synonym>
3499                           <rank>species</rank>
3500                         </taxonomy>
3501                       </clade>
3502                     </clade>
3503                   </clade>
3504                   <clade>
3505                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3506                     <clade>
3507                       <taxonomy>
3508                         <id provider="uniprot">75966</id>
3509                         <scientific_name>Trebouxiophyceae</scientific_name>
3510                         <rank>class</rank>
3511                       </taxonomy>
3512                       <clade>
3513                         <name>ASTSPC</name>
3514                         <taxonomy>
3515                           <id provider="uniprot">763042</id>
3516                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
3517                           <rank>species</rank>
3518                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
3519                         </taxonomy>
3520                       </clade>
3521                       <clade>
3522                         <name>CHLVUL</name>
3523                         <taxonomy>
3524                           <id provider="uniprot">574566</id>
3525                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3526                           <synonym>Chlorella vulgaris C-169</synonym>
3527                           <rank>species</rank>
3528                         </taxonomy>
3529                       </clade>
3530                     </clade>
3531                     <clade>
3532                       <taxonomy>
3533                         <id provider="uniprot">3042</id>
3534                         <scientific_name>Chlamydomonadales</scientific_name>
3535                         <rank>order</rank>
3536                       </taxonomy>
3537                       <clade>
3538                         <taxonomy>
3539                           <id provider="uniprot">3055</id>
3540                           <code>CHLRE</code>
3541                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3542                           <synonym>Chlamydomonas smithii</synonym>
3543                           <rank>species</rank>
3544                         </taxonomy>
3545                       </clade>
3546                       <clade>
3547                         <taxonomy>
3548                           <id provider="uniprot">3067</id>
3549                           <code>VOLCA</code>
3550                           <scientific_name>Volvox carteri</scientific_name>
3551                           <common_name>Green alga</common_name>
3552                           <rank>species</rank>
3553                         </taxonomy>
3554                       </clade>
3555                     </clade>
3556                   </clade>
3557                 </clade>
3558               </clade>
3559               <clade>
3560                 <taxonomy>
3561                   <id provider="uniprot">45157</id>
3562                   <code>CYAME</code>
3563                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3564                   <common_name>Red alga</common_name>
3565                   <rank>species</rank>
3566                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3567                 </taxonomy>
3568               </clade>
3569             </clade>
3570             <clade>
3571               <name>Chromalveolate</name>
3572               <reference doi="10.1073/pnas.0712248105">
3573               </reference>
3574               <clade>
3575                 <name>Heterokonta_Alveolata</name>
3576                 <clade>
3577                   <name>Alveolata</name>
3578                   <taxonomy>
3579                     <id provider="uniprot">33630</id>
3580                     <scientific_name>Alveolata</scientific_name>
3581                   </taxonomy>
3582                   <clade>
3583                     <taxonomy>
3584                       <id provider="uniprot">5794</id>
3585                       <scientific_name>Apicomplexa</scientific_name>
3586                       <rank>phylum</rank>
3587                     </taxonomy>
3588                     <clade>
3589                       <taxonomy>
3590                         <id provider="uniprot">422676</id>
3591                         <scientific_name>Aconoidasida</scientific_name>
3592                         <rank>class</rank>
3593                       </taxonomy>
3594                       <clade>
3595                         <taxonomy>
3596                           <id provider="uniprot">5820</id>
3597                           <scientific_name>Plasmodium</scientific_name>
3598                           <rank>genus</rank>
3599                         </taxonomy>
3600                         <clade>
3601                           <taxonomy>
3602                             <id provider="uniprot">5825</id>
3603                             <code>PLACH</code>
3604                             <scientific_name>Plasmodium chabaudi</scientific_name>
3605                             <rank>species</rank>
3606                           </taxonomy>
3607                         </clade>
3608                         <clade>
3609                           <taxonomy>
3610                             <id provider="uniprot">73239</id>
3611                             <code>PLAYO</code>
3612                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3613                             <rank>subspecies</rank>
3614                           </taxonomy>
3615                         </clade>
3616                       </clade>
3617                       <clade>
3618                         <name>Theileria</name>
3619                         <taxonomy>
3620                           <id provider="uniprot">5873</id>
3621                           <scientific_name>Theileria</scientific_name>
3622                           <rank>genus</rank>
3623                         </taxonomy>
3624                         <clade>
3625                           <taxonomy>
3626                             <id provider="uniprot">5874</id>
3627                             <code>THEAN</code>
3628                             <scientific_name>Theileria annulata</scientific_name>
3629                             <rank>species</rank>
3630                           </taxonomy>
3631                         </clade>
3632                         <clade>
3633                           <taxonomy>
3634                             <id provider="uniprot">5875</id>
3635                             <code>THEPA</code>
3636                             <scientific_name>Theileria parva</scientific_name>
3637                             <rank>species</rank>
3638                           </taxonomy>
3639                         </clade>
3640                       </clade>
3641                     </clade>
3642                     <clade>
3643                       <taxonomy>
3644                         <id provider="uniprot">423054</id>
3645                         <scientific_name>Eimeriorina</scientific_name>
3646                         <rank>suborder</rank>
3647                       </taxonomy>
3648                       <clade>
3649                         <taxonomy>
3650                           <id provider="uniprot">5806</id>
3651                           <scientific_name>Cryptosporidium</scientific_name>
3652                           <rank>genus</rank>
3653                         </taxonomy>
3654                         <clade>
3655                           <taxonomy>
3656                             <id provider="uniprot">237895</id>
3657                             <code>CRYHO</code>
3658                             <scientific_name>Cryptosporidium hominis</scientific_name>
3659                             <rank>species</rank>
3660                           </taxonomy>
3661                         </clade>
3662                         <clade>
3663                           <taxonomy>
3664                             <id provider="uniprot">5807</id>
3665                             <code>CRYPV</code>
3666                             <scientific_name>Cryptosporidium parvum</scientific_name>
3667                             <rank>species</rank>
3668                           </taxonomy>
3669                         </clade>
3670                       </clade>
3671                       <clade>
3672                         <name>Eimeria &amp; Toxoplasma</name>
3673                         <distribution>
3674                           <point geodetic_datum="?" alt_unit="?">
3675                             <lat>0</lat>
3676                             <long>0</long>
3677                             <alt>0</alt>
3678                           </point>
3679                         </distribution>
3680                         <reference doi="10.1093/molbev/msn213">
3681                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3682                         </reference>
3683                         <reference>
3684                         </reference>
3685                         <clade>
3686                           <taxonomy>
3687                             <id provider="uniprot">5802</id>
3688                             <code>EIMTE</code>
3689                             <scientific_name>Eimeria tenella</scientific_name>
3690                             <common_name>Coccidian parasite</common_name>
3691                             <rank>species</rank>
3692                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3693                           </taxonomy>
3694                         </clade>
3695                         <clade>
3696                           <taxonomy>
3697                             <id provider="uniprot">5811</id>
3698                             <code>TOXGO</code>
3699                             <scientific_name>Toxoplasma gondii</scientific_name>
3700                             <rank>species</rank>
3701                           </taxonomy>
3702                         </clade>
3703                       </clade>
3704                     </clade>
3705                   </clade>
3706                   <clade>
3707                     <taxonomy>
3708                       <id provider="uniprot">6020</id>
3709                       <scientific_name>Oligohymenophorea</scientific_name>
3710                       <rank>class</rank>
3711                     </taxonomy>
3712                     <clade>
3713                       <taxonomy>
3714                         <id provider="uniprot">5888</id>
3715                         <code>PARTE</code>
3716                         <scientific_name>Paramecium tetraurelia</scientific_name>
3717                         <rank>species</rank>
3718                       </taxonomy>
3719                     </clade>
3720                     <clade>
3721                       <taxonomy>
3722                         <id provider="uniprot">5911</id>
3723                         <code>TETTH</code>
3724                         <scientific_name>Tetrahymena thermophila</scientific_name>
3725                         <rank>species</rank>
3726                       </taxonomy>
3727                     </clade>
3728                   </clade>
3729                 </clade>
3730                 <clade>
3731                   <name>Heterokonta</name>
3732                   <taxonomy>
3733                     <id provider="uniprot">33634</id>
3734                     <scientific_name>stramenopiles</scientific_name>
3735                     <synonym>Chromophyta</synonym>
3736                   </taxonomy>
3737                   <clade>
3738                     <name>Pelagophyceae_Bacillariophyta</name>
3739                     <clade>
3740                       <taxonomy>
3741                         <id provider="uniprot">2836</id>
3742                         <scientific_name>Bacillariophyta</scientific_name>
3743                         <common_name>diatoms</common_name>
3744                         <rank>phylum</rank>
3745                       </taxonomy>
3746                       <clade>
3747                         <taxonomy>
3748                           <id provider="uniprot">33850</id>
3749                           <scientific_name>Bacillariophycidae</scientific_name>
3750                         </taxonomy>
3751                         <clade>
3752                           <taxonomy>
3753                             <id provider="eol">911694</id>
3754                             <code>FRACY</code>
3755                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
3756                             <authority>Krieger</authority>
3757                             <synonym>Nitzschia cylindrus</synonym>
3758                             <rank>species</rank>
3759                           </taxonomy>
3760                         </clade>
3761                         <clade>
3762                           <taxonomy>
3763                             <id provider="eol">912693</id>
3764                             <code>PHATR</code>
3765                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
3766                             <authority>Bohlin</authority>
3767                             <rank>species</rank>
3768                           </taxonomy>
3769                         </clade>
3770                       </clade>
3771                       <clade>
3772                         <taxonomy>
3773                           <id provider="eol">916868</id>
3774                           <code>THAPS</code>
3775                           <scientific_name>Thalassiosira pseudonana</scientific_name>
3776                           <authority>Hasle &amp; Heimdal</authority>
3777                           <common_name>Marine diatom</common_name>
3778                           <synonym>Cyclotella nana</synonym>
3779                           <rank>species</rank>
3780                         </taxonomy>
3781                       </clade>
3782                     </clade>
3783                     <clade>
3784                       <taxonomy>
3785                         <id provider="eol">912461</id>
3786                         <code>AURAN</code>
3787                         <scientific_name>Aureococcus anophagefferens</scientific_name>
3788                         <authority>Hargraves &amp; Sieburth</authority>
3789                         <rank>species</rank>
3790                       </taxonomy>
3791                     </clade>
3792                   </clade>
3793                   <clade>
3794                     <taxonomy>
3795                       <id provider="uniprot">4783</id>
3796                       <scientific_name>Phytophthora</scientific_name>
3797                       <rank>genus</rank>
3798                     </taxonomy>
3799                     <clade>
3800                       <taxonomy>
3801                         <id provider="uniprot">4787</id>
3802                         <code>PHYIN</code>
3803                         <scientific_name>Phytophthora infestans</scientific_name>
3804                         <common_name>Potato late blight fungus</common_name>
3805                         <rank>species</rank>
3806                       </taxonomy>
3807                     </clade>
3808                     <clade>
3809                       <name>PHYSO</name>
3810                       <taxonomy>
3811                         <id provider="uniprot">67593</id>
3812                         <scientific_name>Phytophthora sojae</scientific_name>
3813                         <rank>species</rank>
3814                       </taxonomy>
3815                     </clade>
3816                   </clade>
3817                 </clade>
3818               </clade>
3819               <clade>
3820                 <taxonomy>
3821                   <id provider="uniprot">2903</id>
3822                   <code>EMIHU</code>
3823                   <scientific_name>Emiliania huxleyi</scientific_name>
3824                   <rank>species</rank>
3825                 </taxonomy>
3826               </clade>
3827             </clade>
3828           </clade>
3829           <clade>
3830             <name>Excavata</name>
3831             <reference doi="10.1038/nature04546">
3832             </reference>
3833             <clade>
3834               <name>Kinetoplastida_Heterolobosea</name>
3835               <clade>
3836                 <taxonomy>
3837                   <id provider="uniprot">5654</id>
3838                   <scientific_name>Trypanosomatidae</scientific_name>
3839                   <rank>family</rank>
3840                 </taxonomy>
3841                 <clade>
3842                   <taxonomy>
3843                     <id provider="uniprot">5664</id>
3844                     <code>LEIMA</code>
3845                     <scientific_name>Leishmania major</scientific_name>
3846                     <rank>species</rank>
3847                   </taxonomy>
3848                 </clade>
3849                 <clade>
3850                   <taxonomy>
3851                     <id provider="uniprot">5702</id>
3852                     <code>TRYBB</code>
3853                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
3854                     <rank>subspecies</rank>
3855                   </taxonomy>
3856                 </clade>
3857               </clade>
3858               <clade>
3859                 <taxonomy>
3860                   <id provider="uniprot">5762</id>
3861                   <code>NAEGR</code>
3862                   <scientific_name>Naegleria gruberi</scientific_name>
3863                   <common_name>Amoeba</common_name>
3864                   <rank>species</rank>
3865                 </taxonomy>
3866               </clade>
3867             </clade>
3868             <clade>
3869               <name>Metamonada</name>
3870               <clade>
3871                 <taxonomy>
3872                   <id provider="uniprot">5741</id>
3873                   <code>GIALA</code>
3874                   <scientific_name>Giardia lamblia</scientific_name>
3875                   <synonym>Giardia intestinalis</synonym>
3876                   <synonym>Giardia lamblia</synonym>
3877                   <rank>species</rank>
3878                 </taxonomy>
3879               </clade>
3880               <clade>
3881                 <taxonomy>
3882                   <id provider="uniprot">5722</id>
3883                   <code>TRIVA</code>
3884                   <scientific_name>Trichomonas vaginalis</scientific_name>
3885                   <rank>species</rank>
3886                 </taxonomy>
3887               </clade>
3888             </clade>
3889           </clade>
3890         </clade>
3891       </clade>
3892       <clade>
3893         <name>Archaea</name>
3894         <taxonomy>
3895           <id provider="uniprot">2157</id>
3896           <scientific_name>Archaea</scientific_name>
3897           <rank>superkingdom</rank>
3898         </taxonomy>
3899         <clade>
3900           <name>a_62</name>
3901           <clade>
3902             <name>a_56</name>
3903             <clade>
3904               <taxonomy>
3905                 <id provider="uniprot">28890</id>
3906                 <scientific_name>Euryarchaeota</scientific_name>
3907                 <rank>phylum</rank>
3908               </taxonomy>
3909               <clade>
3910                 <name>a_44</name>
3911                 <clade>
3912                   <name>a_28</name>
3913                   <clade>
3914                     <name>a_26</name>
3915                     <clade>
3916                       <taxonomy>
3917                         <id provider="uniprot">224756</id>
3918                         <scientific_name>Methanomicrobia</scientific_name>
3919                         <rank>class</rank>
3920                       </taxonomy>
3921                       <clade>
3922                         <name>a_14</name>
3923                         <clade>
3924                           <name>a_12</name>
3925                           <clade>
3926                             <taxonomy>
3927                               <id provider="uniprot">2206</id>
3928                               <scientific_name>Methanosarcinaceae</scientific_name>
3929                               <rank>family</rank>
3930                             </taxonomy>
3931                             <clade>
3932                               <taxonomy>
3933                                 <id provider="uniprot">2207</id>
3934                                 <scientific_name>Methanosarcina</scientific_name>
3935                                 <rank>genus</rank>
3936                               </taxonomy>
3937                               <clade>
3938                                 <name>a_2</name>
3939                                 <clade>
3940                                   <taxonomy>
3941                                     <id provider="uniprot">2214</id>
3942                                     <code>METAC</code>
3943                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
3944                                     <rank>species</rank>
3945                                   </taxonomy>
3946                                 </clade>
3947                                 <clade>
3948                                   <taxonomy>
3949                                     <id provider="uniprot">269797</id>
3950                                     <code>METBF</code>
3951                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
3952                                   </taxonomy>
3953                                 </clade>
3954                               </clade>
3955                               <clade>
3956                                 <taxonomy>
3957                                   <id provider="uniprot">2209</id>
3958                                   <code>METMA</code>
3959                                   <scientific_name>Methanosarcina mazei</scientific_name>
3960                                   <synonym>Methanosarcina frisia</synonym>
3961                                   <rank>species</rank>
3962                                 </taxonomy>
3963                               </clade>
3964                             </clade>
3965                             <clade>
3966                               <taxonomy>
3967                                 <id provider="uniprot">259564</id>
3968                                 <code>METBU</code>
3969                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
3970                               </taxonomy>
3971                             </clade>
3972                           </clade>
3973                           <clade>
3974                             <name>a_11</name>
3975                             <taxonomy>
3976                               <id provider="uniprot">2191</id>
3977                               <scientific_name>Methanomicrobiales</scientific_name>
3978                               <rank>order</rank>
3979                             </taxonomy>
3980                             <clade>
3981                               <name>a_9</name>
3982                               <clade>
3983                                 <taxonomy>
3984                                   <id provider="uniprot">456442</id>
3985                                   <code>METB6</code>
3986                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
3987                                 </taxonomy>
3988                               </clade>
3989                               <clade>
3990                                 <taxonomy>
3991                                   <id provider="uniprot">2203</id>
3992                                   <code>METHU</code>
3993                                   <scientific_name>Methanospirillum hungatei</scientific_name>
3994                                   <rank>species</rank>
3995                                 </taxonomy>
3996                               </clade>
3997                             </clade>
3998                             <clade>
3999                               <taxonomy>
4000                                 <id provider="uniprot">368407</id>
4001                                 <code>METMJ</code>
4002                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4003                               </taxonomy>
4004                             </clade>
4005                           </clade>
4006                         </clade>
4007                         <clade>
4008                           <taxonomy>
4009                             <id provider="uniprot">410358</id>
4010                             <code>METLZ</code>
4011                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4012                           </taxonomy>
4013                         </clade>
4014                       </clade>
4015                       <clade>
4016                         <taxonomy>
4017                           <id provider="uniprot">349307</id>
4018                           <code>METTP</code>
4019                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4020                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4021                         </taxonomy>
4022                       </clade>
4023                     </clade>
4024                     <clade>
4025                       <name>a_25</name>
4026                       <taxonomy>
4027                         <id provider="uniprot">2236</id>
4028                         <scientific_name>Halobacteriaceae</scientific_name>
4029                         <rank>family</rank>
4030                       </taxonomy>
4031                       <clade>
4032                         <name>a_23</name>
4033                         <clade>
4034                           <name>a_19</name>
4035                           <clade>
4036                             <taxonomy>
4037                               <id provider="uniprot">2238</id>
4038                               <code>HALMA</code>
4039                               <scientific_name>Haloarcula marismortui</scientific_name>
4040                               <synonym>Halobacterium marismortui</synonym>
4041                               <rank>species</rank>
4042                             </taxonomy>
4043                           </clade>
4044                           <clade>
4045                             <taxonomy>
4046                               <id provider="uniprot">2257</id>
4047                               <code>NATPH</code>
4048                               <scientific_name>Natronomonas pharaonis</scientific_name>
4049                               <common_name>Natronobacterium pharaonis</common_name>
4050                               <rank>species</rank>
4051                             </taxonomy>
4052                           </clade>
4053                         </clade>
4054                         <clade>
4055                           <name>a_22</name>
4056                           <taxonomy>
4057                             <id provider="uniprot">2239</id>
4058                             <scientific_name>Halobacterium</scientific_name>
4059                             <rank>genus</rank>
4060                           </taxonomy>
4061                           <clade>
4062                             <taxonomy>
4063                               <id provider="uniprot">478009</id>
4064                               <code>HALS3</code>
4065                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4066                             </taxonomy>
4067                           </clade>
4068                           <clade>
4069                             <taxonomy>
4070                               <id provider="uniprot">2243</id>
4071                               <code>HALSP</code>
4072                               <scientific_name>Halobacterium sp.</scientific_name>
4073                               <rank>species</rank>
4074                             </taxonomy>
4075                           </clade>
4076                         </clade>
4077                       </clade>
4078                       <clade>
4079                         <taxonomy>
4080                           <id provider="uniprot">362976</id>
4081                           <code>HALWD</code>
4082                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4083                         </taxonomy>
4084                       </clade>
4085                     </clade>
4086                   </clade>
4087                   <clade>
4088                     <taxonomy>
4089                       <id provider="uniprot">2234</id>
4090                       <code>ARCFU</code>
4091                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4092                       <rank>species</rank>
4093                     </taxonomy>
4094                   </clade>
4095                 </clade>
4096                 <clade>
4097                   <name>a_43</name>
4098                   <clade>
4099                     <name>a_41</name>
4100                     <clade>
4101                       <name>a_35</name>
4102                       <taxonomy>
4103                         <id provider="uniprot">2182</id>
4104                         <scientific_name>Methanococcales</scientific_name>
4105                         <rank>order</rank>
4106                       </taxonomy>
4107                       <clade>
4108                         <name>a_31</name>
4109                         <clade>
4110                           <taxonomy>
4111                             <id provider="uniprot">2190</id>
4112                             <code>METJA</code>
4113                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4114                             <synonym>Methanococcus jannaschii</synonym>
4115                             <rank>species</rank>
4116                           </taxonomy>
4117                         </clade>
4118                         <clade>
4119                           <taxonomy>
4120                             <id provider="uniprot">419665</id>
4121                             <code>META3</code>
4122                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4123                           </taxonomy>
4124                         </clade>
4125                       </clade>
4126                       <clade>
4127                         <name>a_34</name>
4128                         <taxonomy>
4129                           <id provider="uniprot">2184</id>
4130                           <scientific_name>Methanococcus</scientific_name>
4131                           <rank>genus</rank>
4132                         </taxonomy>
4133                         <clade>
4134                           <taxonomy>
4135                             <id provider="uniprot">39152</id>
4136                             <code>METMP</code>
4137                             <scientific_name>Methanococcus maripaludis</scientific_name>
4138                             <synonym>Methanococcus deltae</synonym>
4139                             <rank>species</rank>
4140                           </taxonomy>
4141                         </clade>
4142                         <clade>
4143                           <taxonomy>
4144                             <id provider="uniprot">406327</id>
4145                             <code>METVS</code>
4146                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4147                           </taxonomy>
4148                         </clade>
4149                       </clade>
4150                     </clade>
4151                     <clade>
4152                       <name>a_40</name>
4153                       <taxonomy>
4154                         <id provider="uniprot">2159</id>
4155                         <scientific_name>Methanobacteriaceae</scientific_name>
4156                         <rank>family</rank>
4157                       </taxonomy>
4158                       <clade>
4159                         <name>a_38</name>
4160                         <clade>
4161                           <taxonomy>
4162                             <id provider="uniprot">420247</id>
4163                             <code>METS3</code>
4164                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4165                           </taxonomy>
4166                         </clade>
4167                         <clade>
4168                           <taxonomy>
4169                             <id provider="uniprot">339860</id>
4170                             <code>METST</code>
4171                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4172                           </taxonomy>
4173                         </clade>
4174                       </clade>
4175                       <clade>
4176                         <taxonomy>
4177                           <id provider="uniprot">187420</id>
4178                           <code>METTH</code>
4179                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4180                         </taxonomy>
4181                       </clade>
4182                     </clade>
4183                   </clade>
4184                   <clade>
4185                     <taxonomy>
4186                       <id provider="uniprot">2320</id>
4187                       <code>METKA</code>
4188                       <scientific_name>Methanopyrus kandleri</scientific_name>
4189                       <rank>species</rank>
4190                     </taxonomy>
4191                   </clade>
4192                 </clade>
4193               </clade>
4194               <clade>
4195                 <name>a_51</name>
4196                 <taxonomy>
4197                   <id provider="uniprot">2259</id>
4198                   <scientific_name>Thermococcaceae</scientific_name>
4199                   <rank>family</rank>
4200                 </taxonomy>
4201                 <clade>
4202                   <name>a_47</name>
4203                   <clade>
4204                     <taxonomy>
4205                       <id provider="uniprot">2261</id>
4206                       <code>PYRFU</code>
4207                       <scientific_name>Pyrococcus furiosus</scientific_name>
4208                       <rank>species</rank>
4209                     </taxonomy>
4210                   </clade>
4211                   <clade>
4212                     <taxonomy>
4213                       <id provider="uniprot">69014</id>
4214                       <code>PYRKO</code>
4215                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4216                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4217                     </taxonomy>
4218                   </clade>
4219                 </clade>
4220                 <clade>
4221                   <name>a_50</name>
4222                   <taxonomy>
4223                     <id provider="uniprot">2260</id>
4224                     <scientific_name>Pyrococcus</scientific_name>
4225                     <rank>genus</rank>
4226                   </taxonomy>
4227                   <clade>
4228                     <taxonomy>
4229                       <id provider="uniprot">29292</id>
4230                       <code>PYRAB</code>
4231                       <scientific_name>Pyrococcus abyssi</scientific_name>
4232                       <rank>species</rank>
4233                     </taxonomy>
4234                   </clade>
4235                   <clade>
4236                     <taxonomy>
4237                       <id provider="uniprot">53953</id>
4238                       <code>PYRHO</code>
4239                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4240                       <rank>species</rank>
4241                     </taxonomy>
4242                   </clade>
4243                 </clade>
4244               </clade>
4245             </clade>
4246             <clade>
4247               <name>a_55</name>
4248               <clade>
4249                 <taxonomy>
4250                   <id provider="uniprot">228908</id>
4251                   <code>NANEQ</code>
4252                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4253                 </taxonomy>
4254               </clade>
4255               <clade>
4256                 <taxonomy>
4257                   <id provider="uniprot">436308</id>
4258                   <code>NITMS</code>
4259                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4260                 </taxonomy>
4261               </clade>
4262             </clade>
4263           </clade>
4264           <clade>
4265             <taxonomy>
4266               <id provider="uniprot">2301</id>
4267               <scientific_name>Thermoplasmatales</scientific_name>
4268               <rank>order</rank>
4269             </taxonomy>
4270             <clade>
4271               <name>a_59</name>
4272               <taxonomy>
4273                 <id provider="uniprot">2302</id>
4274                 <scientific_name>Thermoplasma</scientific_name>
4275                 <rank>genus</rank>
4276               </taxonomy>
4277               <clade>
4278                 <taxonomy>
4279                   <id provider="uniprot">273075</id>
4280                   <code>THEAC</code>
4281                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4282                 </taxonomy>
4283               </clade>
4284               <clade>
4285                 <taxonomy>
4286                   <id provider="uniprot">273116</id>
4287                   <code>THEVO</code>
4288                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4289                 </taxonomy>
4290               </clade>
4291             </clade>
4292             <clade>
4293               <taxonomy>
4294                 <id provider="uniprot">263820</id>
4295                 <code>PICTO</code>
4296                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4297               </taxonomy>
4298             </clade>
4299           </clade>
4300         </clade>
4301         <clade>
4302           <name>a_93</name>
4303           <clade>
4304             <taxonomy>
4305               <id provider="uniprot">183924</id>
4306               <scientific_name>Thermoprotei</scientific_name>
4307               <rank>class</rank>
4308             </taxonomy>
4309             <clade>
4310               <name>a_83</name>
4311               <clade>
4312                 <name>a_81</name>
4313                 <clade>
4314                   <name>a_73</name>
4315                   <taxonomy>
4316                     <id provider="uniprot">2267</id>
4317                     <scientific_name>Thermoproteaceae</scientific_name>
4318                     <rank>family</rank>
4319                   </taxonomy>
4320                   <clade>
4321                     <name>a_71</name>
4322                     <clade>
4323                       <name>a_67</name>
4324                       <taxonomy>
4325                         <id provider="uniprot">2276</id>
4326                         <scientific_name>Pyrobaculum</scientific_name>
4327                         <rank>genus</rank>
4328                       </taxonomy>
4329                       <clade>
4330                         <name>a_65</name>
4331                         <clade>
4332                           <taxonomy>
4333                             <id provider="uniprot">340102</id>
4334                             <code>PYRAR</code>
4335                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
4336                           </taxonomy>
4337                         </clade>
4338                         <clade>
4339                           <taxonomy>
4340                             <id provider="uniprot">410359</id>
4341                             <code>PYRCJ</code>
4342                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
4343                           </taxonomy>
4344                         </clade>
4345                       </clade>
4346                       <clade>
4347                         <taxonomy>
4348                           <id provider="uniprot">13773</id>
4349                           <code>PYRAE</code>
4350                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
4351                           <rank>species</rank>
4352                         </taxonomy>
4353                       </clade>
4354                     </clade>
4355                     <clade>
4356                       <name>a_70</name>
4357                       <clade>
4358                         <taxonomy>
4359                           <id provider="uniprot">384616</id>
4360                           <code>PYRIL</code>
4361                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
4362                         </taxonomy>
4363                       </clade>
4364                       <clade>
4365                         <taxonomy>
4366                           <id provider="uniprot">444157</id>
4367                           <code>THENV</code>
4368                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
4369                         </taxonomy>
4370                       </clade>
4371                     </clade>
4372                   </clade>
4373                   <clade>
4374                     <taxonomy>
4375                       <id provider="uniprot">397948</id>
4376                       <code>CALMQ</code>
4377                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
4378                     </taxonomy>
4379                   </clade>
4380                 </clade>
4381                 <clade>
4382                   <name>a_80</name>
4383                   <taxonomy>
4384                     <id provider="uniprot">118883</id>
4385                     <scientific_name>Sulfolobaceae</scientific_name>
4386                     <rank>family</rank>
4387                   </taxonomy>
4388                   <clade>
4389                     <name>a_78</name>
4390                     <taxonomy>
4391                       <id provider="uniprot">2284</id>
4392                       <scientific_name>Sulfolobus</scientific_name>
4393                       <rank>genus</rank>
4394                     </taxonomy>
4395                     <clade>
4396                       <name>a_76</name>
4397                       <clade>
4398                         <taxonomy>
4399                           <id provider="uniprot">2285</id>
4400                           <code>SULAC</code>
4401                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
4402                           <rank>species</rank>
4403                         </taxonomy>
4404                       </clade>
4405                       <clade>
4406                         <taxonomy>
4407                           <id provider="uniprot">273063</id>
4408                           <code>SULTO</code>
4409                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
4410                         </taxonomy>
4411                       </clade>
4412                     </clade>
4413                     <clade>
4414                       <taxonomy>
4415                         <id provider="uniprot">2287</id>
4416                         <code>SULSO</code>
4417                         <scientific_name>Sulfolobus solfataricus</scientific_name>
4418                         <rank>species</rank>
4419                       </taxonomy>
4420                     </clade>
4421                   </clade>
4422                   <clade>
4423                     <taxonomy>
4424                       <id provider="uniprot">399549</id>
4425                       <code>METS5</code>
4426                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
4427                     </taxonomy>
4428                   </clade>
4429                 </clade>
4430               </clade>
4431               <clade>
4432                 <taxonomy>
4433                   <id provider="uniprot">56636</id>
4434                   <code>AERPE</code>
4435                   <scientific_name>Aeropyrum pernix</scientific_name>
4436                   <rank>species</rank>
4437                 </taxonomy>
4438               </clade>
4439             </clade>
4440             <clade>
4441               <name>a_90</name>
4442               <clade>
4443                 <name>a_88</name>
4444                 <clade>
4445                   <name>a_86</name>
4446                   <clade>
4447                     <taxonomy>
4448                       <id provider="uniprot">399550</id>
4449                       <code>STAMF</code>
4450                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
4451                     </taxonomy>
4452                   </clade>
4453                   <clade>
4454                     <taxonomy>
4455                       <id provider="uniprot">368408</id>
4456                       <code>THEPD</code>
4457                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
4458                     </taxonomy>
4459                   </clade>
4460                 </clade>
4461                 <clade>
4462                   <taxonomy>
4463                     <id provider="uniprot">415426</id>
4464                     <code>HYPBU</code>
4465                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
4466                   </taxonomy>
4467                 </clade>
4468               </clade>
4469               <clade>
4470                 <taxonomy>
4471                   <id provider="uniprot">453591</id>
4472                   <code>IGNH4</code>
4473                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
4474                 </taxonomy>
4475               </clade>
4476             </clade>
4477           </clade>
4478           <clade>
4479             <taxonomy>
4480               <id provider="uniprot">374847</id>
4481               <code>KORCO</code>
4482               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
4483             </taxonomy>
4484           </clade>
4485         </clade>
4486       </clade>
4487     </clade>
4488     <clade>
4489       <taxonomy>
4490         <id provider="uniprot">2</id>
4491         <scientific_name>Bacteria</scientific_name>
4492         <rank>superkingdom</rank>
4493       </taxonomy>
4494       <clade>
4495         <name>b_278</name>
4496         <clade>
4497           <name>b_268</name>
4498           <clade>
4499             <name>b_226</name>
4500             <clade>
4501               <name>b_200</name>
4502               <clade>
4503                 <name>b_194</name>
4504                 <clade>
4505                   <name>b_104</name>
4506                   <clade>
4507                     <name>b_80</name>
4508                     <clade>
4509                       <taxonomy>
4510                         <id provider="uniprot">1224</id>
4511                         <scientific_name>Proteobacteria</scientific_name>
4512                         <rank>phylum</rank>
4513                       </taxonomy>
4514                       <clade>
4515                         <name>b_52</name>
4516                         <clade>
4517                           <name>b_44</name>
4518                           <clade>
4519                             <name>b_30</name>
4520                             <clade>
4521                               <name>b_24</name>
4522                               <taxonomy>
4523                                 <id provider="uniprot">1236</id>
4524                                 <scientific_name>Gammaproteobacteria</scientific_name>
4525                                 <rank>class</rank>
4526                               </taxonomy>
4527                               <clade>
4528                                 <name>b_16</name>
4529                                 <clade>
4530                                   <name>b_10</name>
4531                                   <taxonomy>
4532                                     <id provider="uniprot">543</id>
4533                                     <scientific_name>Enterobacteriaceae</scientific_name>
4534                                     <rank>family</rank>
4535                                   </taxonomy>
4536                                   <clade>
4537                                     <name>b_8</name>
4538                                     <clade>
4539                                       <name>b_6</name>
4540                                       <clade>
4541                                         <name>b_4</name>
4542                                         <clade>
4543                                           <name>b_2</name>
4544                                           <taxonomy>
4545                                             <id provider="uniprot">561</id>
4546                                             <scientific_name>Escherichia</scientific_name>
4547                                             <rank>genus</rank>
4548                                           </taxonomy>
4549                                           <clade>
4550                                             <taxonomy>
4551                                               <id provider="uniprot">83333</id>
4552                                               <code>ECOLI</code>
4553                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
4554                                             </taxonomy>
4555                                           </clade>
4556                                           <clade>
4557                                             <taxonomy>
4558                                               <id provider="uniprot">83334</id>
4559                                               <code>ECO57</code>
4560                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
4561                                             </taxonomy>
4562                                           </clade>
4563                                         </clade>
4564                                         <clade>
4565                                           <taxonomy>
4566                                             <id provider="uniprot">623</id>
4567                                             <code>SHIFL</code>
4568                                             <scientific_name>Shigella flexneri</scientific_name>
4569                                             <rank>species</rank>
4570                                           </taxonomy>
4571                                         </clade>
4572                                       </clade>
4573                                       <clade>
4574                                         <taxonomy>
4575                                           <id provider="uniprot">90371</id>
4576                                           <code>SALTY</code>
4577                                           <scientific_name>Salmonella typhimurium</scientific_name>
4578                                         </taxonomy>
4579                                       </clade>
4580                                     </clade>
4581                                     <clade>
4582                                       <taxonomy>
4583                                         <id provider="uniprot">632</id>
4584                                         <code>YERPE</code>
4585                                         <scientific_name>Yersinia pestis</scientific_name>
4586                                         <rank>species</rank>
4587                                       </taxonomy>
4588                                     </clade>
4589                                   </clade>
4590                                   <clade>
4591                                     <taxonomy>
4592                                       <id provider="uniprot">29488</id>
4593                                       <code>PHOLU</code>
4594                                       <scientific_name>Photorhabdus luminescens</scientific_name>
4595                                       <synonym>Xenorhabdus luminescens</synonym>
4596                                       <rank>species</rank>
4597                                     </taxonomy>
4598                                   </clade>
4599                                 </clade>
4600                                 <clade>
4601                                   <name>b_15</name>
4602                                   <clade>
4603                                     <name>b_13</name>
4604                                     <taxonomy>
4605                                       <id provider="uniprot">641</id>
4606                                       <scientific_name>Vibrionaceae</scientific_name>
4607                                       <rank>family</rank>
4608                                     </taxonomy>
4609                                     <clade>
4610                                       <taxonomy>
4611                                         <id provider="uniprot">74109</id>
4612                                         <code>PHOPR</code>
4613                                         <scientific_name>Photobacterium profundum</scientific_name>
4614                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
4615                                         <rank>species</rank>
4616                                       </taxonomy>
4617                                     </clade>
4618                                     <clade>
4619                                       <taxonomy>
4620                                         <id provider="uniprot">666</id>
4621                                         <code>VIBCH</code>
4622                                         <scientific_name>Vibrio cholerae</scientific_name>
4623                                         <rank>species</rank>
4624                                       </taxonomy>
4625                                     </clade>
4626                                   </clade>
4627                                   <clade>
4628                                     <taxonomy>
4629                                       <id provider="uniprot">318161</id>
4630                                       <code>SHEDO</code>
4631                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
4632                                     </taxonomy>
4633                                   </clade>
4634                                 </clade>
4635                               </clade>
4636                               <clade>
4637                                 <name>b_23</name>
4638                                 <clade>
4639                                   <name>b_21</name>
4640                                   <taxonomy>
4641                                     <id provider="uniprot">286</id>
4642                                     <scientific_name>Pseudomonas</scientific_name>
4643                                     <rank>genus</rank>
4644                                   </taxonomy>
4645                                   <clade>
4646                                     <name>b_19</name>
4647                                     <clade>
4648                                       <taxonomy>
4649                                         <id provider="uniprot">220664</id>
4650                                         <code>PSEF5</code>
4651                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
4652                                       </taxonomy>
4653                                     </clade>
4654                                     <clade>
4655                                       <taxonomy>
4656                                         <id provider="uniprot">205922</id>
4657                                         <code>PSEPF</code>
4658                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
4659                                       </taxonomy>
4660                                     </clade>
4661                                   </clade>
4662                                   <clade>
4663                                     <taxonomy>
4664                                       <id provider="uniprot">287</id>
4665                                       <code>PSEAE</code>
4666                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
4667                                       <rank>species</rank>
4668                                     </taxonomy>
4669                                   </clade>
4670                                 </clade>
4671                                 <clade>
4672                                   <taxonomy>
4673                                     <id provider="uniprot">290398</id>
4674                                     <code>CHRSD</code>
4675                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
4676                                   </taxonomy>
4677                                 </clade>
4678                               </clade>
4679                             </clade>
4680                             <clade>
4681                               <name>b_29</name>
4682                               <taxonomy>
4683                                 <id provider="uniprot">28216</id>
4684                                 <scientific_name>Betaproteobacteria</scientific_name>
4685                                 <rank>class</rank>
4686                               </taxonomy>
4687                               <clade>
4688                                 <taxonomy>
4689                                   <id provider="uniprot">159087</id>
4690                                   <code>DECAR</code>
4691                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
4692                                 </taxonomy>
4693                               </clade>
4694                               <clade>
4695                                 <taxonomy>
4696                                   <id provider="uniprot">266264</id>
4697                                   <code>RALME</code>
4698                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
4699                                 </taxonomy>
4700                               </clade>
4701                             </clade>
4702                           </clade>
4703                           <clade>
4704                             <name>b_43</name>
4705                             <clade>
4706                               <name>b_41</name>
4707                               <clade>
4708                                 <name>b_35</name>
4709                                 <taxonomy>
4710                                   <id provider="uniprot">28216</id>
4711                                   <scientific_name>Betaproteobacteria</scientific_name>
4712                                   <rank>class</rank>
4713                                 </taxonomy>
4714                                 <clade>
4715                                   <name>b_33</name>
4716                                   <taxonomy>
4717                                     <id provider="uniprot">206379</id>
4718                                     <scientific_name>Nitrosomonadaceae</scientific_name>
4719                                     <rank>family</rank>
4720                                   </taxonomy>
4721                                   <clade>
4722                                     <taxonomy>
4723                                       <id provider="uniprot">915</id>
4724                                       <code>NITEU</code>
4725                                       <scientific_name>Nitrosomonas europaea</scientific_name>
4726                                       <rank>species</rank>
4727                                     </taxonomy>
4728                                   </clade>
4729                                   <clade>
4730                                     <taxonomy>
4731                                       <id provider="uniprot">323848</id>
4732                                       <code>NITMU</code>
4733                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
4734                                     </taxonomy>
4735                                   </clade>
4736                                 </clade>
4737                                 <clade>
4738                                   <taxonomy>
4739                                     <id provider="uniprot">36861</id>
4740                                     <code>THIDE</code>
4741                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
4742                                     <rank>species</rank>
4743                                   </taxonomy>
4744                                 </clade>
4745                               </clade>
4746                               <clade>
4747                                 <name>b_40</name>
4748                                 <taxonomy>
4749                                   <id provider="uniprot">135613</id>
4750                                   <scientific_name>Chromatiales</scientific_name>
4751                                   <rank>order</rank>
4752                                 </taxonomy>
4753                                 <clade>
4754                                   <name>b_38</name>
4755                                   <taxonomy>
4756                                     <id provider="uniprot">72276</id>
4757                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
4758                                     <common_name>purple sulfur bacteria</common_name>
4759                                     <rank>family</rank>
4760                                   </taxonomy>
4761                                   <clade>
4762                                     <taxonomy>
4763                                       <id provider="uniprot">187272</id>
4764                                       <code>ALHEH</code>
4765                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
4766                                     </taxonomy>
4767                                   </clade>
4768                                   <clade>
4769                                     <taxonomy>
4770                                       <id provider="uniprot">349124</id>
4771                                       <code>HALHL</code>
4772                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
4773                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
4774                                     </taxonomy>
4775                                   </clade>
4776                                 </clade>
4777                                 <clade>
4778                                   <taxonomy>
4779                                     <id provider="uniprot">323261</id>
4780                                     <code>NITOC</code>
4781                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
4782                                   </taxonomy>
4783                                 </clade>
4784                               </clade>
4785                             </clade>
4786                             <clade>
4787                               <taxonomy>
4788                                 <id provider="uniprot">317025</id>
4789                                 <code>THICR</code>
4790                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
4791                               </taxonomy>
4792                             </clade>
4793                           </clade>
4794                         </clade>
4795                         <clade>
4796                           <name>b_51</name>
4797                           <taxonomy>
4798                             <id provider="uniprot">1236</id>
4799                             <scientific_name>Gammaproteobacteria</scientific_name>
4800                             <rank>class</rank>
4801                           </taxonomy>
4802                           <clade>
4803                             <name>b_47</name>
4804                             <clade>
4805                               <taxonomy>
4806                                 <id provider="uniprot">135577</id>
4807                                 <code>IDILO</code>
4808                                 <scientific_name>Idiomarina loihiensis</scientific_name>
4809                                 <rank>species</rank>
4810                               </taxonomy>
4811                             </clade>
4812                             <clade>
4813                               <taxonomy>
4814                                 <id provider="uniprot">446</id>
4815                                 <code>LEGPN</code>
4816                                 <scientific_name>Legionella pneumophila</scientific_name>
4817                                 <rank>species</rank>
4818                               </taxonomy>
4819                             </clade>
4820                           </clade>
4821                           <clade>
4822                             <name>b_50</name>
4823                             <taxonomy>
4824                               <id provider="uniprot">32033</id>
4825                               <scientific_name>Xanthomonadaceae</scientific_name>
4826                               <rank>family</rank>
4827                             </taxonomy>
4828                             <clade>
4829                               <taxonomy>
4830                                 <id provider="uniprot">92829</id>
4831                                 <code>XANAC</code>
4832                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
4833                                 <common_name>Citrus canker</common_name>
4834                               </taxonomy>
4835                             </clade>
4836                             <clade>
4837                               <taxonomy>
4838                                 <id provider="uniprot">183190</id>
4839                                 <code>XYLFT</code>
4840                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
4841                               </taxonomy>
4842                             </clade>
4843                           </clade>
4844                         </clade>
4845                       </clade>
4846                       <clade>
4847                         <name>b_71</name>
4848                         <taxonomy>
4849                           <id provider="uniprot">28211</id>
4850                           <scientific_name>Alphaproteobacteria</scientific_name>
4851                           <rank>class</rank>
4852                         </taxonomy>
4853                         <clade>
4854                           <name>b_67</name>
4855                           <clade>
4856                             <name>b_65</name>
4857                             <clade>
4858                               <name>b_61</name>
4859                               <taxonomy>
4860                                 <id provider="uniprot">356</id>
4861                                 <scientific_name>Rhizobiales</scientific_name>
4862                                 <rank>order</rank>
4863                               </taxonomy>
4864                               <clade>
4865                                 <name>b_57</name>
4866                                 <taxonomy>
4867                                   <id provider="uniprot">227290</id>
4868                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
4869                                 </taxonomy>
4870                                 <clade>
4871                                   <taxonomy>
4872                                     <id provider="uniprot">176299</id>
4873                                     <code>AGRT5</code>
4874                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
4875                                   </taxonomy>
4876                                 </clade>
4877                                 <clade>
4878                                   <taxonomy>
4879                                     <id provider="uniprot">347834</id>
4880                                     <code>RHIEC</code>
4881                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
4882                                   </taxonomy>
4883                                 </clade>
4884                               </clade>
4885                               <clade>
4886                                 <name>b_60</name>
4887                                 <taxonomy>
4888                                   <id provider="uniprot">41294</id>
4889                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
4890                                   <rank>family</rank>
4891                                 </taxonomy>
4892                                 <clade>
4893                                   <taxonomy>
4894                                     <id provider="uniprot">375</id>
4895                                     <code>BRAJA</code>
4896                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
4897                                     <rank>species</rank>
4898                                   </taxonomy>
4899                                 </clade>
4900                                 <clade>
4901                                   <taxonomy>
4902                                     <id provider="uniprot">395960</id>
4903                                     <code>RHOPT</code>
4904                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
4905                                   </taxonomy>
4906                                 </clade>
4907                               </clade>
4908                             </clade>
4909                             <clade>
4910                               <name>b_64</name>
4911                               <taxonomy>
4912                                 <id provider="uniprot">31989</id>
4913                                 <scientific_name>Rhodobacteraceae</scientific_name>
4914                                 <rank>family</rank>
4915                               </taxonomy>
4916                               <clade>
4917                                 <taxonomy>
4918                                   <id provider="uniprot">349101</id>
4919                                   <code>RHOS1</code>
4920                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
4921                                 </taxonomy>
4922                               </clade>
4923                               <clade>
4924                                 <taxonomy>
4925                                   <id provider="uniprot">375451</id>
4926                                   <code>ROSDO</code>
4927                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
4928                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
4929                                   <synonym>Roseobacter denitrificans</synonym>
4930                                 </taxonomy>
4931                               </clade>
4932                             </clade>
4933                           </clade>
4934                           <clade>
4935                             <taxonomy>
4936                               <id provider="uniprot">155892</id>
4937                               <code>CAUCR</code>
4938                               <scientific_name>Caulobacter crescentus</scientific_name>
4939                               <synonym>Caulobacter vibrioides</synonym>
4940                               <rank>species</rank>
4941                             </taxonomy>
4942                           </clade>
4943                         </clade>
4944                         <clade>
4945                           <name>b_70</name>
4946                           <taxonomy>
4947                             <id provider="uniprot">204441</id>
4948                             <scientific_name>Rhodospirillales</scientific_name>
4949                             <rank>order</rank>
4950                           </taxonomy>
4951                           <clade>
4952                             <taxonomy>
4953                               <id provider="uniprot">524</id>
4954                               <code>ACICY</code>
4955                               <scientific_name>Acidiphilium cryptum</scientific_name>
4956                               <rank>species</rank>
4957                             </taxonomy>
4958                           </clade>
4959                           <clade>
4960                             <taxonomy>
4961                               <id provider="uniprot">1085</id>
4962                               <code>RHORU</code>
4963                               <scientific_name>Rhodospirillum rubrum</scientific_name>
4964                               <rank>species</rank>
4965                             </taxonomy>
4966                           </clade>
4967                         </clade>
4968                       </clade>
4969                     </clade>
4970                     <clade>
4971                       <name>b_79</name>
4972                       <clade>
4973                         <name>b_77</name>
4974                         <taxonomy>
4975                           <id provider="uniprot">1224</id>
4976                           <scientific_name>Proteobacteria</scientific_name>
4977                           <rank>phylum</rank>
4978                         </taxonomy>
4979                         <clade>
4980                           <name>b_75</name>
4981                           <taxonomy>
4982                             <id provider="uniprot">712</id>
4983                             <scientific_name>Pasteurellaceae</scientific_name>
4984                             <rank>family</rank>
4985                           </taxonomy>
4986                           <clade>
4987                             <taxonomy>
4988                               <id provider="uniprot">727</id>
4989                               <code>HAEIN</code>
4990                               <scientific_name>Haemophilus influenzae</scientific_name>
4991                               <rank>species</rank>
4992                             </taxonomy>
4993                           </clade>
4994                           <clade>
4995                             <taxonomy>
4996                               <id provider="uniprot">747</id>
4997                               <code>PASMU</code>
4998                               <scientific_name>Pasteurella multocida</scientific_name>
4999                               <rank>species</rank>
5000                             </taxonomy>
5001                           </clade>
5002                         </clade>
5003                         <clade>
5004                           <taxonomy>
5005                             <id provider="uniprot">487</id>
5006                             <code>NEIME</code>
5007                             <scientific_name>Neisseria meningitidis</scientific_name>
5008                             <rank>species</rank>
5009                           </taxonomy>
5010                         </clade>
5011                       </clade>
5012                       <clade>
5013                         <taxonomy>
5014                           <id provider="uniprot">905</id>
5015                           <code>ACIFE</code>
5016                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5017                           <rank>species</rank>
5018                         </taxonomy>
5019                       </clade>
5020                     </clade>
5021                   </clade>
5022                   <clade>
5023                     <name>b_103</name>
5024                     <clade>
5025                       <name>b_91</name>
5026                       <taxonomy>
5027                         <id provider="uniprot">28221</id>
5028                         <scientific_name>Deltaproteobacteria</scientific_name>
5029                         <rank>class</rank>
5030                       </taxonomy>
5031                       <clade>
5032                         <name>b_87</name>
5033                         <clade>
5034                           <name>b_83</name>
5035                           <clade>
5036                             <taxonomy>
5037                               <id provider="uniprot">84980</id>
5038                               <code>DESPS</code>
5039                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5040                               <rank>species</rank>
5041                             </taxonomy>
5042                           </clade>
5043                           <clade>
5044                             <taxonomy>
5045                               <id provider="uniprot">876</id>
5046                               <code>DESDE</code>
5047                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5048                               <rank>species</rank>
5049                             </taxonomy>
5050                           </clade>
5051                         </clade>
5052                         <clade>
5053                           <taxonomy>
5054                             <id provider="uniprot">56780</id>
5055                             <code>SYNAS</code>
5056                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5057                           </taxonomy>
5058                         </clade>
5059                       </clade>
5060                       <clade>
5061                         <name>b_90</name>
5062                         <taxonomy>
5063                           <id provider="uniprot">28231</id>
5064                           <scientific_name>Geobacter</scientific_name>
5065                           <rank>genus</rank>
5066                         </taxonomy>
5067                         <clade>
5068                           <taxonomy>
5069                             <id provider="uniprot">28232</id>
5070                             <code>GEOME</code>
5071                             <scientific_name>Geobacter metallireducens</scientific_name>
5072                             <rank>species</rank>
5073                           </taxonomy>
5074                         </clade>
5075                         <clade>
5076                           <taxonomy>
5077                             <id provider="uniprot">35554</id>
5078                             <code>GEOSL</code>
5079                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5080                             <rank>species</rank>
5081                           </taxonomy>
5082                         </clade>
5083                       </clade>
5084                     </clade>
5085                     <clade>
5086                       <name>b_102</name>
5087                       <clade>
5088                         <name>b_98</name>
5089                         <clade>
5090                           <name>b_94</name>
5091                           <taxonomy>
5092                             <id provider="uniprot">31</id>
5093                             <scientific_name>Myxococcaceae</scientific_name>
5094                             <rank>family</rank>
5095                           </taxonomy>
5096                           <clade>
5097                             <taxonomy>
5098                               <id provider="uniprot">290397</id>
5099                               <code>ANADE</code>
5100                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5101                             </taxonomy>
5102                           </clade>
5103                           <clade>
5104                             <taxonomy>
5105                               <id provider="uniprot">34</id>
5106                               <code>MYXXA</code>
5107                               <scientific_name>Myxococcus xanthus</scientific_name>
5108                               <rank>species</rank>
5109                             </taxonomy>
5110                           </clade>
5111                         </clade>
5112                         <clade>
5113                           <name>b_97</name>
5114                           <taxonomy>
5115                             <id provider="uniprot">57723</id>
5116                             <scientific_name>Acidobacteria</scientific_name>
5117                             <rank>phylum</rank>
5118                           </taxonomy>
5119                           <clade>
5120                             <taxonomy>
5121                               <id provider="uniprot">204669</id>
5122                               <code>ACIBL</code>
5123                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5124                             </taxonomy>
5125                           </clade>
5126                           <clade>
5127                             <taxonomy>
5128                               <id provider="uniprot">332163</id>
5129                               <code>SOLUS</code>
5130                               <scientific_name>Solibacter usitatus</scientific_name>
5131                               <rank>species</rank>
5132                             </taxonomy>
5133                           </clade>
5134                         </clade>
5135                       </clade>
5136                       <clade>
5137                         <taxonomy>
5138                           <id provider="uniprot">265606</id>
5139                           <code>RHOBA</code>
5140                           <scientific_name>Rhodopirellula baltica</scientific_name>
5141                           <rank>species</rank>
5142                         </taxonomy>
5143                       </clade>
5144                     </clade>
5145                   </clade>
5146                 </clade>
5147                 <clade>
5148                   <name>b_193</name>
5149                   <clade>
5150                     <name>b_163</name>
5151                     <clade>
5152                       <name>b_133</name>
5153                       <clade>
5154                         <name>Chloroflexi &amp; Actinobacteria</name>
5155                         <clade>
5156                           <taxonomy>
5157                             <id provider="uniprot">200795</id>
5158                             <scientific_name>Chloroflexi</scientific_name>
5159                             <common_name>GNS bacteria</common_name>
5160                             <synonym>Thermomicrobia</synonym>
5161                             <rank>phylum</rank>
5162                           </taxonomy>
5163                           <clade>
5164                             <taxonomy>
5165                               <id provider="uniprot">32061</id>
5166                               <scientific_name>Chloroflexi (class)</scientific_name>
5167                               <synonym>Chloroflecales</synonym>
5168                               <synonym>Chloroflexus/Deinococcus group</synonym>
5169                               <rank>class</rank>
5170                             </taxonomy>
5171                             <clade>
5172                               <name>b_122</name>
5173                               <taxonomy>
5174                                 <id provider="uniprot">1106</id>
5175                                 <scientific_name>Chloroflexaceae</scientific_name>
5176                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5177                                 <rank>family</rank>
5178                               </taxonomy>
5179                               <clade>
5180                                 <taxonomy>
5181                                   <id provider="uniprot">1108</id>
5182                                   <code>CHLAU</code>
5183                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5184                                   <rank>species</rank>
5185                                 </taxonomy>
5186                               </clade>
5187                               <clade>
5188                                 <taxonomy>
5189                                   <id provider="uniprot">383372</id>
5190                                   <code>ROSCS</code>
5191                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
5192                                   <rank>species</rank>
5193                                 </taxonomy>
5194                               </clade>
5195                             </clade>
5196                             <clade>
5197                               <taxonomy>
5198                                 <id provider="uniprot">65</id>
5199                                 <code>HERAU</code>
5200                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
5201                                 <synonym>Herpetosiphon giganteus</synonym>
5202                                 <rank>species</rank>
5203                               </taxonomy>
5204                             </clade>
5205                           </clade>
5206                           <clade>
5207                             <taxonomy>
5208                               <id provider="uniprot">479434</id>
5209                               <code>SPHTD</code>
5210                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
5211                               <rank>strain</rank>
5212                             </taxonomy>
5213                           </clade>
5214                         </clade>
5215                         <clade>
5216                           <taxonomy>
5217                             <id provider="uniprot">201174</id>
5218                             <scientific_name>Actinobacteria</scientific_name>
5219                             <rank>phylum</rank>
5220                           </taxonomy>
5221                           <clade>
5222                             <taxonomy>
5223                               <id provider="uniprot">2037</id>
5224                               <scientific_name>Actinomycetales</scientific_name>
5225                               <rank>order</rank>
5226                             </taxonomy>
5227                             <clade>
5228                               <name>b_115</name>
5229                               <clade>
5230                                 <taxonomy>
5231                                   <id provider="uniprot">266940</id>
5232                                   <code>KINRD</code>
5233                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5234                                 </taxonomy>
5235                               </clade>
5236                               <clade>
5237                                 <taxonomy>
5238                                   <id provider="uniprot">1032480</id>
5239                                   <code>MICPN</code>
5240                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5241                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5242                                   <rank>strain</rank>
5243                                 </taxonomy>
5244                               </clade>
5245                             </clade>
5246                             <clade>
5247                               <taxonomy>
5248                                 <id provider="uniprot">85007</id>
5249                                 <scientific_name>Corynebacterineae</scientific_name>
5250                                 <rank>suborder</rank>
5251                               </taxonomy>
5252                               <clade>
5253                                 <taxonomy>
5254                                   <id provider="uniprot">1763</id>
5255                                   <scientific_name>Mycobacterium</scientific_name>
5256                                   <rank>genus</rank>
5257                                 </taxonomy>
5258                                 <clade>
5259                                   <taxonomy>
5260                                     <id provider="uniprot">1769</id>
5261                                     <code>MYCLE</code>
5262                                     <scientific_name>Mycobacterium leprae</scientific_name>
5263                                     <rank>species</rank>
5264                                   </taxonomy>
5265                                 </clade>
5266                                 <clade>
5267                                   <taxonomy>
5268                                     <id provider="uniprot">1773</id>
5269                                     <code>MYCTU</code>
5270                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5271                                     <rank>species</rank>
5272                                   </taxonomy>
5273                                 </clade>
5274                               </clade>
5275                               <clade>
5276                                 <taxonomy>
5277                                   <id provider="uniprot">632772</id>
5278                                   <code>RHOOB</code>
5279                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5280                                   <rank>strain</rank>
5281                                 </taxonomy>
5282                               </clade>
5283                             </clade>
5284                           </clade>
5285                           <clade>
5286                             <taxonomy>
5287                               <id provider="uniprot">266117</id>
5288                               <code>RUBXD</code>
5289                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5290                             </taxonomy>
5291                           </clade>
5292                         </clade>
5293                       </clade>
5294                       <clade>
5295                         <name>b_132</name>
5296                         <taxonomy>
5297                           <id provider="uniprot">188787</id>
5298                           <scientific_name>Deinococci</scientific_name>
5299                           <rank>class</rank>
5300                         </taxonomy>
5301                         <clade>
5302                           <name>b_130</name>
5303                           <taxonomy>
5304                             <id provider="uniprot">1298</id>
5305                             <scientific_name>Deinococcus</scientific_name>
5306                             <rank>genus</rank>
5307                           </taxonomy>
5308                           <clade>
5309                             <taxonomy>
5310                               <id provider="uniprot">319795</id>
5311                               <code>DEIGD</code>
5312                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
5313                             </taxonomy>
5314                           </clade>
5315                           <clade>
5316                             <taxonomy>
5317                               <id provider="uniprot">1299</id>
5318                               <code>DEIRA</code>
5319                               <scientific_name>Deinococcus radiodurans</scientific_name>
5320                               <rank>species</rank>
5321                             </taxonomy>
5322                           </clade>
5323                         </clade>
5324                         <clade>
5325                           <taxonomy>
5326                             <id provider="uniprot">274</id>
5327                             <code>THETH</code>
5328                             <scientific_name>Thermus thermophilus</scientific_name>
5329                             <rank>species</rank>
5330                           </taxonomy>
5331                         </clade>
5332                       </clade>
5333                     </clade>
5334                     <clade>
5335                       <name>b_162</name>
5336                       <taxonomy>
5337                         <id provider="uniprot">1117</id>
5338                         <scientific_name>Cyanobacteria</scientific_name>
5339                         <rank>phylum</rank>
5340                       </taxonomy>
5341                       <clade>
5342                         <name>b_154</name>
5343                         <clade>
5344                           <name>b_152</name>
5345                           <clade>
5346                             <name>b_146</name>
5347                             <clade>
5348                               <name>b_144</name>
5349                               <clade>
5350                                 <name>b_142</name>
5351                                 <clade>
5352                                   <name>b_138</name>
5353                                   <taxonomy>
5354                                     <id provider="uniprot">1162</id>
5355                                     <scientific_name>Nostocaceae</scientific_name>
5356                                     <rank>family</rank>
5357                                   </taxonomy>
5358                                   <clade>
5359                                     <name>b_136</name>
5360                                     <clade>
5361                                       <taxonomy>
5362                                         <id provider="uniprot">1172</id>
5363                                         <code>ANAVA</code>
5364                                         <scientific_name>Anabaena variabilis</scientific_name>
5365                                         <rank>species</rank>
5366                                       </taxonomy>
5367                                     </clade>
5368                                     <clade>
5369                                       <taxonomy>
5370                                         <id provider="uniprot">28072</id>
5371                                         <code>NOSS7</code>
5372                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
5373                                         <rank>species</rank>
5374                                       </taxonomy>
5375                                     </clade>
5376                                   </clade>
5377                                   <clade>
5378                                     <taxonomy>
5379                                       <id provider="uniprot">63737</id>
5380                                       <code>NOSP7</code>
5381                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
5382                                     </taxonomy>
5383                                   </clade>
5384                                 </clade>
5385                                 <clade>
5386                                   <taxonomy>
5387                                     <id provider="uniprot">155978</id>
5388                                     <code>ACAMR</code>
5389                                     <scientific_name>Acaryochloris marina</scientific_name>
5390                                     <rank>species</rank>
5391                                   </taxonomy>
5392                                 </clade>
5393                               </clade>
5394                               <clade>
5395                                 <taxonomy>
5396                                   <id provider="uniprot">449447</id>
5397                                   <code>MICAN</code>
5398                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
5399                                 </taxonomy>
5400                               </clade>
5401                             </clade>
5402                             <clade>
5403                               <taxonomy>
5404                                 <id provider="uniprot">1206</id>
5405                                 <code>TRIER</code>
5406                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
5407                                 <rank>species</rank>
5408                               </taxonomy>
5409                             </clade>
5410                           </clade>
5411                           <clade>
5412                             <name>b_149</name>
5413                             <taxonomy>
5414                               <id provider="uniprot">1118</id>
5415                               <scientific_name>Chroococcales</scientific_name>
5416                               <rank>order</rank>
5417                             </taxonomy>
5418                             <clade>
5419                               <taxonomy>
5420                                 <id provider="uniprot">32046</id>
5421                                 <code>SYNEL</code>
5422                                 <scientific_name>Synechococcus elongatus</scientific_name>
5423                                 <rank>species</rank>
5424                               </taxonomy>
5425                             </clade>
5426                             <clade>
5427                               <taxonomy>
5428                                 <id provider="uniprot">1148</id>
5429                                 <code>SYNY3</code>
5430                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
5431                                 <rank>species</rank>
5432                               </taxonomy>
5433                             </clade>
5434                           </clade>
5435                         </clade>
5436                         <clade>
5437                           <taxonomy>
5438                             <id provider="uniprot">33072</id>
5439                             <code>GLOVI</code>
5440                             <scientific_name>Gloeobacter violaceus</scientific_name>
5441                             <rank>species</rank>
5442                           </taxonomy>
5443                         </clade>
5444                       </clade>
5445                       <clade>
5446                         <name>b_161</name>
5447                         <clade>
5448                           <name>b_159</name>
5449                           <taxonomy>
5450                             <id provider="uniprot">1218</id>
5451                             <scientific_name>Prochlorococcus</scientific_name>
5452                             <rank>genus</rank>
5453                           </taxonomy>
5454                           <clade>
5455                             <name>b_157</name>
5456                             <clade>
5457                               <taxonomy>
5458                                 <id provider="uniprot">1219</id>
5459                                 <code>PROMA</code>
5460                                 <scientific_name>Prochlorococcus marinus</scientific_name>
5461                                 <rank>species</rank>
5462                               </taxonomy>
5463                             </clade>
5464                             <clade>
5465                               <taxonomy>
5466                                 <id provider="uniprot">59919</id>
5467                                 <code>PROMP</code>
5468                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
5469                               </taxonomy>
5470                             </clade>
5471                           </clade>
5472                           <clade>
5473                             <taxonomy>
5474                               <id provider="uniprot">74547</id>
5475                               <code>PROMM</code>
5476                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
5477                             </taxonomy>
5478                           </clade>
5479                         </clade>
5480                         <clade>
5481                           <taxonomy>
5482                             <id provider="uniprot">64471</id>
5483                             <code>SYNS3</code>
5484                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
5485                             <rank>species</rank>
5486                           </taxonomy>
5487                         </clade>
5488                       </clade>
5489                     </clade>
5490                   </clade>
5491                   <clade>
5492                     <name>b_192</name>
5493                     <clade>
5494                       <name>b_190</name>
5495                       <clade>
5496                         <name>b_178</name>
5497                         <clade>
5498                           <name>b_176</name>
5499                           <taxonomy>
5500                             <id provider="uniprot">191412</id>
5501                             <scientific_name>Chlorobiaceae</scientific_name>
5502                             <rank>family</rank>
5503                           </taxonomy>
5504                           <clade>
5505                             <name>b_170</name>
5506                             <clade>
5507                               <name>b_166</name>
5508                               <clade>
5509                                 <taxonomy>
5510                                   <id provider="uniprot">331678</id>
5511                                   <code>CHLPB</code>
5512                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
5513                                 </taxonomy>
5514                               </clade>
5515                               <clade>
5516                                 <taxonomy>
5517                                   <id provider="uniprot">1102</id>
5518                                   <code>PROAE</code>
5519                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
5520                                   <rank>species</rank>
5521                                 </taxonomy>
5522                               </clade>
5523                             </clade>
5524                             <clade>
5525                               <name>b_169</name>
5526                               <taxonomy>
5527                                 <id provider="uniprot">274493</id>
5528                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
5529                               </taxonomy>
5530                               <clade>
5531                                 <taxonomy>
5532                                   <id provider="uniprot">1100</id>
5533                                   <code>PELLU</code>
5534                                   <scientific_name>Pelodictyon luteolum</scientific_name>
5535                                   <rank>species</rank>
5536                                 </taxonomy>
5537                               </clade>
5538                               <clade>
5539                                 <taxonomy>
5540                                   <id provider="uniprot">290318</id>
5541                                   <code>PROVI</code>
5542                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
5543                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
5544                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
5545                                 </taxonomy>
5546                               </clade>
5547                             </clade>
5548                           </clade>
5549                           <clade>
5550                             <name>b_175</name>
5551                             <clade>
5552                               <name>b_173</name>
5553                               <taxonomy>
5554                                 <id provider="uniprot">256319</id>
5555                                 <scientific_name>Chlorobaculum</scientific_name>
5556                                 <rank>genus</rank>
5557                               </taxonomy>
5558                               <clade>
5559                                 <taxonomy>
5560                                   <id provider="uniprot">517417</id>
5561                                   <code>CHLP8</code>
5562                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
5563                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
5564                                 </taxonomy>
5565                               </clade>
5566                               <clade>
5567                                 <taxonomy>
5568                                   <id provider="uniprot">1097</id>
5569                                   <code>CHLTE</code>
5570                                   <scientific_name>Chlorobium tepidum</scientific_name>
5571                                   <rank>species</rank>
5572                                 </taxonomy>
5573                               </clade>
5574                             </clade>
5575                             <clade>
5576                               <taxonomy>
5577                                 <id provider="uniprot">340177</id>
5578                                 <code>CHLCH</code>
5579                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
5580                               </taxonomy>
5581                             </clade>
5582                           </clade>
5583                         </clade>
5584                         <clade>
5585                           <taxonomy>
5586                             <id provider="uniprot">315277</id>
5587                             <code>CHLTA</code>
5588                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
5589                           </taxonomy>
5590                         </clade>
5591                       </clade>
5592                       <clade>
5593                         <name>b_189</name>
5594                         <taxonomy>
5595                           <id provider="uniprot">976</id>
5596                           <scientific_name>Bacteroidetes</scientific_name>
5597                           <rank>phylum</rank>
5598                         </taxonomy>
5599                         <clade>
5600                           <name>b_183</name>
5601                           <clade>
5602                             <name>b_181</name>
5603                             <taxonomy>
5604                               <id provider="uniprot">49546</id>
5605                               <scientific_name>Flavobacteriaceae</scientific_name>
5606                               <rank>family</rank>
5607                             </taxonomy>
5608                             <clade>
5609                               <taxonomy>
5610                                 <id provider="uniprot">986</id>
5611                                 <code>FLAJO</code>
5612                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
5613                                 <synonym>Cytophaga johnsonae</synonym>
5614                                 <rank>species</rank>
5615                               </taxonomy>
5616                             </clade>
5617                             <clade>
5618                               <taxonomy>
5619                                 <id provider="uniprot">411154</id>
5620                                 <code>GRAFK</code>
5621                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
5622                               </taxonomy>
5623                             </clade>
5624                           </clade>
5625                           <clade>
5626                             <taxonomy>
5627                               <id provider="uniprot">269798</id>
5628                               <code>CYTH3</code>
5629                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
5630                             </taxonomy>
5631                           </clade>
5632                         </clade>
5633                         <clade>
5634                           <name>b_188</name>
5635                           <taxonomy>
5636                             <id provider="uniprot">171549</id>
5637                             <scientific_name>Bacteroidales</scientific_name>
5638                             <rank>order</rank>
5639                           </taxonomy>
5640                           <clade>
5641                             <name>b_186</name>
5642                             <taxonomy>
5643                               <id provider="uniprot">816</id>
5644                               <scientific_name>Bacteroides</scientific_name>
5645                               <rank>genus</rank>
5646                             </taxonomy>
5647                             <clade>
5648                               <taxonomy>
5649                                 <id provider="uniprot">817</id>
5650                                 <code>BACFR</code>
5651                                 <scientific_name>Bacteroides fragilis</scientific_name>
5652                                 <rank>species</rank>
5653                               </taxonomy>
5654                             </clade>
5655                             <clade>
5656                               <taxonomy>
5657                                 <id provider="uniprot">818</id>
5658                                 <code>BACTN</code>
5659                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
5660                                 <rank>species</rank>
5661                               </taxonomy>
5662                             </clade>
5663                           </clade>
5664                           <clade>
5665                             <taxonomy>
5666                               <id provider="uniprot">837</id>
5667                               <code>PORGI</code>
5668                               <scientific_name>Porphyromonas gingivalis</scientific_name>
5669                               <synonym>Bacteroides gingivalis</synonym>
5670                               <rank>species</rank>
5671                             </taxonomy>
5672                           </clade>
5673                         </clade>
5674                       </clade>
5675                     </clade>
5676                     <clade>
5677                       <taxonomy>
5678                         <id provider="uniprot">309807</id>
5679                         <code>SALRD</code>
5680                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
5681                       </taxonomy>
5682                     </clade>
5683                   </clade>
5684                 </clade>
5685               </clade>
5686               <clade>
5687                 <name>b_199</name>
5688                 <clade>
5689                   <name>b_197</name>
5690                   <taxonomy>
5691                     <scientific_name>Verrucomicrobia</scientific_name>
5692                   </taxonomy>
5693                   <clade>
5694                     <taxonomy>
5695                       <id provider="uniprot">349741</id>
5696                       <code>AKKM8</code>
5697                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
5698                     </taxonomy>
5699                   </clade>
5700                   <clade>
5701                     <taxonomy>
5702                       <id provider="uniprot">481448</id>
5703                       <code>METI4</code>
5704                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
5705                       <synonym>Methylokorus infernorum (strain V4)</synonym>
5706                     </taxonomy>
5707                   </clade>
5708                 </clade>
5709                 <clade>
5710                   <taxonomy>
5711                     <id provider="uniprot">44275</id>
5712                     <code>LEPIC</code>
5713                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
5714                   </taxonomy>
5715                 </clade>
5716               </clade>
5717             </clade>
5718             <clade>
5719               <name>b_225</name>
5720               <clade>
5721                 <name>b_219</name>
5722                 <taxonomy>
5723                   <id provider="uniprot">1239</id>
5724                   <scientific_name>Firmicutes</scientific_name>
5725                   <rank>phylum</rank>
5726                 </taxonomy>
5727                 <clade>
5728                   <name>b_213</name>
5729                   <clade>
5730                     <taxonomy>
5731                       <id provider="uniprot">1385</id>
5732                       <scientific_name>Bacillales</scientific_name>
5733                       <rank>order</rank>
5734                     </taxonomy>
5735                     <clade>
5736                       <taxonomy>
5737                         <id provider="uniprot">186817</id>
5738                         <scientific_name>Bacillaceae</scientific_name>
5739                         <rank>family</rank>
5740                       </taxonomy>
5741                       <clade>
5742                         <taxonomy>
5743                           <id provider="uniprot">1386</id>
5744                           <scientific_name>Bacillus</scientific_name>
5745                           <rank>genus</rank>
5746                         </taxonomy>
5747                         <clade>
5748                           <taxonomy>
5749                             <id provider="uniprot">86661</id>
5750                             <scientific_name>Bacillus cereus group</scientific_name>
5751                           </taxonomy>
5752                           <clade>
5753                             <taxonomy>
5754                               <id provider="uniprot">1392</id>
5755                               <code>BACAN</code>
5756                               <scientific_name>Bacillus anthracis</scientific_name>
5757                               <rank>species</rank>
5758                             </taxonomy>
5759                           </clade>
5760                           <clade>
5761                             <taxonomy>
5762                               <id provider="uniprot">572264</id>
5763                               <code>BACC3</code>
5764                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
5765                               <rank>strain</rank>
5766                             </taxonomy>
5767                           </clade>
5768                         </clade>
5769                         <clade>
5770                           <taxonomy>
5771                             <id provider="uniprot">1423</id>
5772                             <code>BACSU</code>
5773                             <scientific_name>Bacillus subtilis</scientific_name>
5774                             <rank>species</rank>
5775                           </taxonomy>
5776                         </clade>
5777                       </clade>
5778                       <clade>
5779                         <name>b_206</name>
5780                         <clade>
5781                           <taxonomy>
5782                             <id provider="uniprot">86665</id>
5783                             <code>BACHD</code>
5784                             <scientific_name>Bacillus halodurans</scientific_name>
5785                             <rank>species</rank>
5786                           </taxonomy>
5787                         </clade>
5788                         <clade>
5789                           <taxonomy>
5790                             <id provider="uniprot">1462</id>
5791                             <code>GEOKA</code>
5792                             <scientific_name>Geobacillus kaustophilus</scientific_name>
5793                             <rank>species</rank>
5794                           </taxonomy>
5795                         </clade>
5796                       </clade>
5797                     </clade>
5798                     <clade>
5799                       <name>b_210</name>
5800                       <clade>
5801                         <taxonomy>
5802                           <id provider="uniprot">1639</id>
5803                           <code>LISMO</code>
5804                           <scientific_name>Listeria monocytogenes</scientific_name>
5805                           <rank>species</rank>
5806                         </taxonomy>
5807                       </clade>
5808                       <clade>
5809                         <taxonomy>
5810                           <id provider="uniprot">1280</id>
5811                           <code>STAAU</code>
5812                           <scientific_name>Staphylococcus aureus</scientific_name>
5813                           <rank>species</rank>
5814                         </taxonomy>
5815                       </clade>
5816                     </clade>
5817                   </clade>
5818                   <clade>
5819                     <taxonomy>
5820                       <id provider="uniprot">195103</id>
5821                       <code>CLOP1</code>
5822                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
5823                     </taxonomy>
5824                   </clade>
5825                 </clade>
5826                 <clade>
5827                   <name>Clostridia</name>
5828                   <taxonomy>
5829                     <id provider="uniprot">186801</id>
5830                     <scientific_name>Clostridia</scientific_name>
5831                     <rank>class</rank>
5832                   </taxonomy>
5833                   <clade>
5834                     <name>b_218</name>
5835                     <clade>
5836                       <name>b_216</name>
5837                       <taxonomy>
5838                         <id provider="uniprot">186814</id>
5839                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
5840                         <rank>family</rank>
5841                       </taxonomy>
5842                       <clade>
5843                         <taxonomy>
5844                           <id provider="uniprot">246194</id>
5845                           <code>CARHZ</code>
5846                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
5847                         </taxonomy>
5848                       </clade>
5849                       <clade>
5850                         <taxonomy>
5851                           <id provider="uniprot">119072</id>
5852                           <code>THETN</code>
5853                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
5854                           <rank>species</rank>
5855                         </taxonomy>
5856                       </clade>
5857                     </clade>
5858                     <clade>
5859                       <taxonomy>
5860                         <id provider="uniprot">49338</id>
5861                         <code>DESHA</code>
5862                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
5863                         <synonym>Desulfitobacterium frappieri</synonym>
5864                         <rank>species</rank>
5865                       </taxonomy>
5866                     </clade>
5867                   </clade>
5868                   <clade>
5869                     <taxonomy>
5870                       <id provider="uniprot">515619</id>
5871                       <code>EUBR3</code>
5872                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
5873                     </taxonomy>
5874                   </clade>
5875                 </clade>
5876               </clade>
5877               <clade>
5878                 <name>b_224</name>
5879                 <taxonomy>
5880                   <id provider="uniprot">188709</id>
5881                   <scientific_name>Thermotogaceae</scientific_name>
5882                   <rank>family</rank>
5883                 </taxonomy>
5884                 <clade>
5885                   <name>b_222</name>
5886                   <clade>
5887                     <taxonomy>
5888                       <id provider="uniprot">381764</id>
5889                       <code>FERNB</code>
5890                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
5891                     </taxonomy>
5892                   </clade>
5893                   <clade>
5894                     <taxonomy>
5895                       <id provider="uniprot">416591</id>
5896                       <code>THELT</code>
5897                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
5898                     </taxonomy>
5899                   </clade>
5900                 </clade>
5901                 <clade>
5902                   <taxonomy>
5903                     <id provider="uniprot">2336</id>
5904                     <code>THEMA</code>
5905                     <scientific_name>Thermotoga maritima</scientific_name>
5906                     <rank>species</rank>
5907                   </taxonomy>
5908                 </clade>
5909               </clade>
5910             </clade>
5911           </clade>
5912           <clade>
5913             <name>b_267</name>
5914             <clade>
5915               <name>b_263</name>
5916               <clade>
5917                 <name>b_251</name>
5918                 <clade>
5919                   <name>b_249</name>
5920                   <clade>
5921                     <name>b_245</name>
5922                     <clade>
5923                       <name>b_237</name>
5924                       <clade>
5925                         <name>b_233</name>
5926                         <taxonomy>
5927                           <id provider="uniprot">31969</id>
5928                           <scientific_name>Mollicutes</scientific_name>
5929                           <rank>class</rank>
5930                         </taxonomy>
5931                         <clade>
5932                           <name>b_231</name>
5933                           <clade>
5934                             <name>b_229</name>
5935                             <taxonomy>
5936                               <scientific_name>Mycoplasma</scientific_name>
5937                             </taxonomy>
5938                             <clade>
5939                               <taxonomy>
5940                                 <id provider="uniprot">2097</id>
5941                                 <code>MYCGE</code>
5942                                 <scientific_name>Mycoplasma genitalium</scientific_name>
5943                                 <rank>species</rank>
5944                               </taxonomy>
5945                             </clade>
5946                             <clade>
5947                               <taxonomy>
5948                                 <id provider="uniprot">2104</id>
5949                                 <code>MYCPN</code>
5950                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
5951                                 <rank>species</rank>
5952                               </taxonomy>
5953                             </clade>
5954                           </clade>
5955                           <clade>
5956                             <taxonomy>
5957                               <id provider="uniprot">2151</id>
5958                               <code>MESFL</code>
5959                               <scientific_name>Mesoplasma florum</scientific_name>
5960                               <synonym>Acholeplasma florum</synonym>
5961                               <rank>species</rank>
5962                             </taxonomy>
5963                           </clade>
5964                         </clade>
5965                         <clade>
5966                           <taxonomy>
5967                             <id provider="uniprot">134821</id>
5968                             <code>UREPA</code>
5969                             <scientific_name>Ureaplasma parvum</scientific_name>
5970                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
5971                             <rank>species</rank>
5972                           </taxonomy>
5973                         </clade>
5974                       </clade>
5975                       <clade>
5976                         <name>b_236</name>
5977                         <taxonomy>
5978                           <id provider="uniprot">137</id>
5979                           <scientific_name>Spirochaetaceae</scientific_name>
5980                           <rank>family</rank>
5981                         </taxonomy>
5982                         <clade>
5983                           <taxonomy>
5984                             <id provider="uniprot">139</id>
5985                             <code>BORBU</code>
5986                             <scientific_name>Borrelia burgdorferi</scientific_name>
5987                             <common_name>Lyme disease spirochete</common_name>
5988                             <rank>species</rank>
5989                           </taxonomy>
5990                         </clade>
5991                         <clade>
5992                           <taxonomy>
5993                             <id provider="uniprot">160</id>
5994                             <code>TREPA</code>
5995                             <scientific_name>Treponema pallidum</scientific_name>
5996                             <rank>species</rank>
5997                           </taxonomy>
5998                         </clade>
5999                       </clade>
6000                     </clade>
6001                     <clade>
6002                       <name>b_244</name>
6003                       <clade>
6004                         <name>b_242</name>
6005                         <taxonomy>
6006                           <id provider="uniprot">1113537</id>
6007                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6008                         </taxonomy>
6009                         <clade>
6010                           <name>b_240</name>
6011                           <clade>
6012                             <taxonomy>
6013                               <id provider="uniprot">83558</id>
6014                               <code>CHLPN</code>
6015                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6016                               <synonym>Chlamydophila pneumoniae</synonym>
6017                               <rank>species</rank>
6018                             </taxonomy>
6019                           </clade>
6020                           <clade>
6021                             <taxonomy>
6022                               <id provider="uniprot">264202</id>
6023                               <code>CHLFF</code>
6024                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6025                             </taxonomy>
6026                           </clade>
6027                         </clade>
6028                         <clade>
6029                           <taxonomy>
6030                             <id provider="uniprot">83560</id>
6031                             <code>CHLMU</code>
6032                             <scientific_name>Chlamydia muridarum</scientific_name>
6033                             <rank>species</rank>
6034                           </taxonomy>
6035                         </clade>
6036                       </clade>
6037                       <clade>
6038                         <taxonomy>
6039                           <id provider="uniprot">785</id>
6040                           <code>RICTY</code>
6041                           <scientific_name>Rickettsia typhi</scientific_name>
6042                           <rank>species</rank>
6043                         </taxonomy>
6044                       </clade>
6045                     </clade>
6046                   </clade>
6047                   <clade>
6048                     <taxonomy>
6049                       <id provider="uniprot">28211</id>
6050                       <scientific_name>Alphaproteobacteria</scientific_name>
6051                       <rank>class</rank>
6052                     </taxonomy>
6053                     <clade>
6054                       <taxonomy>
6055                         <id provider="uniprot">38323</id>
6056                         <code>BARHE</code>
6057                         <scientific_name>Bartonella henselae</scientific_name>
6058                         <synonym>Rochalimaea henselae</synonym>
6059                         <rank>species</rank>
6060                       </taxonomy>
6061                     </clade>
6062                     <clade>
6063                       <taxonomy>
6064                         <id provider="uniprot">780</id>
6065                         <scientific_name>Rickettsia</scientific_name>
6066                         <rank>genus</rank>
6067                       </taxonomy>
6068                       <clade>
6069                         <taxonomy>
6070                           <id provider="uniprot">452659</id>
6071                           <code>RICRO</code>
6072                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6073                           <rank>strain</rank>
6074                         </taxonomy>
6075                       </clade>
6076                       <clade>
6077                         <taxonomy>
6078                           <id provider="uniprot">391896</id>
6079                           <code>RICB8</code>
6080                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6081                         </taxonomy>
6082                       </clade>
6083                     </clade>
6084                   </clade>
6085                 </clade>
6086                 <clade>
6087                   <taxonomy>
6088                     <id provider="uniprot">263</id>
6089                     <code>FRATU</code>
6090                     <scientific_name>Francisella tularensis</scientific_name>
6091                     <rank>species</rank>
6092                   </taxonomy>
6093                 </clade>
6094               </clade>
6095               <clade>
6096                 <name>b_262</name>
6097                 <clade>
6098                   <name>b_260</name>
6099                   <clade>
6100                     <name>b_258</name>
6101                     <taxonomy>
6102                       <id provider="uniprot">186826</id>
6103                       <scientific_name>Lactobacillales</scientific_name>
6104                       <rank>order</rank>
6105                     </taxonomy>
6106                     <clade>
6107                       <name>b_256</name>
6108                       <taxonomy>
6109                         <id provider="uniprot">1300</id>
6110                         <scientific_name>Streptococcaceae</scientific_name>
6111                         <rank>family</rank>
6112                       </taxonomy>
6113                       <clade>
6114                         <name>b_254</name>
6115                         <taxonomy>
6116                           <id provider="uniprot">1301</id>
6117                           <scientific_name>Streptococcus</scientific_name>
6118                           <rank>genus</rank>
6119                         </taxonomy>
6120                         <clade>
6121                           <taxonomy>
6122                             <id provider="uniprot">1313</id>
6123                             <code>STRPN</code>
6124                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6125                             <rank>species</rank>
6126                           </taxonomy>
6127                         </clade>
6128                         <clade>
6129                           <taxonomy>
6130                             <id provider="uniprot">1314</id>
6131                             <code>STRPY</code>
6132                             <scientific_name>Streptococcus pyogenes</scientific_name>
6133                             <rank>species</rank>
6134                           </taxonomy>
6135                         </clade>
6136                       </clade>
6137                       <clade>
6138                         <taxonomy>
6139                           <id provider="uniprot">1360</id>
6140                           <code>LACLA</code>
6141                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6142                           <synonym>Streptococcus lactis</synonym>
6143                           <rank>subspecies</rank>
6144                         </taxonomy>
6145                       </clade>
6146                     </clade>
6147                     <clade>
6148                       <taxonomy>
6149                         <id provider="uniprot">1579</id>
6150                         <code>LACAC</code>
6151                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6152                         <rank>species</rank>
6153                       </taxonomy>
6154                     </clade>
6155                   </clade>
6156                   <clade>
6157                     <taxonomy>
6158                       <id provider="uniprot">216816</id>
6159                       <code>BIFLO</code>
6160                       <scientific_name>Bifidobacterium longum</scientific_name>
6161                       <rank>species</rank>
6162                     </taxonomy>
6163                   </clade>
6164                 </clade>
6165                 <clade>
6166                   <taxonomy>
6167                     <id provider="uniprot">851</id>
6168                     <code>FUSNU</code>
6169                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6170                     <rank>species</rank>
6171                   </taxonomy>
6172                 </clade>
6173               </clade>
6174             </clade>
6175             <clade>
6176               <name>b_266</name>
6177               <taxonomy>
6178                 <id provider="uniprot">61434</id>
6179                 <scientific_name>Dehalococcoides</scientific_name>
6180                 <rank>genus</rank>
6181               </taxonomy>
6182               <clade>
6183                 <taxonomy>
6184                   <id provider="uniprot">243164</id>
6185                   <code>DEHE1</code>
6186                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6187                 </taxonomy>
6188               </clade>
6189               <clade>
6190                 <taxonomy>
6191                   <id provider="uniprot">216389</id>
6192                   <code>DEHSB</code>
6193                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6194                   <rank>species</rank>
6195                 </taxonomy>
6196               </clade>
6197             </clade>
6198           </clade>
6199         </clade>
6200         <clade>
6201           <name>b_277</name>
6202           <taxonomy>
6203             <id provider="uniprot">29547</id>
6204             <scientific_name>Epsilonproteobacteria</scientific_name>
6205             <rank>class</rank>
6206           </taxonomy>
6207           <clade>
6208             <name>b_273</name>
6209             <clade>
6210               <taxonomy>
6211                 <id provider="uniprot">387092</id>
6212                 <code>NITSB</code>
6213                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6214                 <rank>species</rank>
6215               </taxonomy>
6216             </clade>
6217             <clade>
6218               <taxonomy>
6219                 <id provider="uniprot">387093</id>
6220                 <code>SULNB</code>
6221                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6222                 <rank>species</rank>
6223               </taxonomy>
6224             </clade>
6225           </clade>
6226           <clade>
6227             <name>b_276</name>
6228             <taxonomy>
6229               <id provider="uniprot">213849</id>
6230               <scientific_name>Campylobacterales</scientific_name>
6231               <rank>order</rank>
6232             </taxonomy>
6233             <clade>
6234               <taxonomy>
6235                 <id provider="uniprot">197</id>
6236                 <code>CAMJE</code>
6237                 <scientific_name>Campylobacter jejuni</scientific_name>
6238                 <rank>species</rank>
6239               </taxonomy>
6240             </clade>
6241             <clade>
6242               <taxonomy>
6243                 <id provider="uniprot">357544</id>
6244                 <code>HELPH</code>
6245                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6246               </taxonomy>
6247             </clade>
6248           </clade>
6249         </clade>
6250       </clade>
6251       <clade>
6252         <taxonomy>
6253           <id provider="uniprot">63363</id>
6254           <code>AQUAE</code>
6255           <scientific_name>Aquifex aeolicus</scientific_name>
6256           <rank>species</rank>
6257         </taxonomy>
6258       </clade>
6259     </clade>
6260   </clade>
6261 </phylogeny>
6262 </phyloxml>