forester/test_data/species_tree_1.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
   3    xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd"
   4    xmlns="http://www.phyloxml.org">
   5    <phylogeny rooted="true" rerootable="false">
   6       <clade>
   7          <clade>
   8             <clade>
   9                <clade>
  10                   <clade>
  11                      <clade>
  12                         <clade>
  13                            <clade>
  14                               <clade>
  15                                  <clade>
  16                                     <clade>
  17                                        <clade>
  18                                           <clade>
  19                                              <taxonomy>
  20                                                 <code>MOUSE</code>
  21                                              </taxonomy>
  22                                           </clade>
  23                                           <clade>
  24                                              <taxonomy>
  25                                                 <code>RAT</code>
  26                                              </taxonomy>
  27                                           </clade>
  28                                        </clade>
  29                                        <clade>
  30                                           <taxonomy>
  31                                              <code>HUMAN</code>
  32                                           </taxonomy>
  33                                        </clade>
  34                                     </clade>
  35                                     <clade>
  36                                        <taxonomy>
  37                                           <code>CHICK</code>
  38                                        </taxonomy>
  39                                     </clade>
  40                                  </clade>
  41                                  <clade>
  42                                     <taxonomy>
  43                                        <code>XENLA</code>
  44                                     </taxonomy>
  45                                  </clade>
  46                               </clade>
  47                               <clade>
  48                                  <taxonomy>
  49                                     <code>CIOIN</code>
  50                                  </taxonomy>
  51                               </clade>
  52                            </clade>
  53                            <clade>
  54                               <taxonomy>
  55                                  <code>BRAFL</code>
  56                               </taxonomy>
  57                            </clade>
  58                         </clade>
  59                         <clade>
  60                            <taxonomy>
  61                               <code>STRPU</code>
  62                            </taxonomy>
  63                         </clade>
  64                      </clade>
  65                      <clade>
  66                         <clade>
  67                            <clade>
  68                               <taxonomy>
  69                                  <code>DROME</code>
  70                               </taxonomy>
  71                            </clade>
  72                            <clade>
  73                               <taxonomy>
  74                                  <code>CAEEL</code>
  75                               </taxonomy>
  76                            </clade>
  77                         </clade>
  78                         <clade>
  79                            <taxonomy>
  80                               <code>LOTGI</code>
  81                            </taxonomy>
  82                         </clade>
  83                      </clade>
  84                   </clade>
  85                   <clade>
  86                      <clade>
  87                         <taxonomy>
  88                            <code>NEMVE</code>
  89                         </taxonomy>
  90                      </clade>
  91                      <clade>
  92                         <taxonomy>
  93                            <code>BEROV</code>
  94                         </taxonomy>
  95                      </clade>
  96                   </clade>
  97                </clade>
  98                <clade>
  99                   <taxonomy>
 100                      <code>TRIAD</code>
 101                   </taxonomy>
 102                </clade>
 103             </clade>
 104             <clade>
 105                <taxonomy>
 106                   <code>MONBE</code>
 107                </taxonomy>
 108             </clade>
 109          </clade>
 110          <clade>
 111             <taxonomy>
 112                <code>YEAST</code>
 113             </taxonomy>
 114          </clade>
 115       </clade>
 116    </phylogeny>
 117 </phyloxml>