forester/test_data/tol_143.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <phyloxml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.phyloxml.org http://www.phyloxml.org/1.10/phyloxml.xsd" xmlns="http://www.phyloxml.org">
   3 <phylogeny rooted="true" rerootable="false">
   4   <clade>
   5     <name>cellular_organisms</name>
   6     <clade>
   7       <taxonomy>
   8         <scientific_name>Neomura</scientific_name>
   9       </taxonomy>
  10       <clade>
  11         <taxonomy>
  12           <id provider="uniprot">2759</id>
  13           <scientific_name>Eukaryota</scientific_name>
  14           <rank>superkingdom</rank>
  15         </taxonomy>
  16         <clade>
  17           <name>Unikonta</name>
  18           <clade>
  19             <name>Opisthokonta &amp; Apusozoa</name>
  20             <clade>
  21               <taxonomy>
  22                 <id provider="uniprot">33154</id>
  23                 <scientific_name>Opisthokonta</scientific_name>
  24                 <common_name>Fungi/Metazoa group</common_name>
  25               </taxonomy>
  26               <clade>
  27                 <taxonomy>
  28                   <scientific_name>Holozoa</scientific_name>
  29                 </taxonomy>
  30                 <clade>
  31                   <name>Choanoflagellatea &amp; Metazoa</name>
  32                   <clade>
  33                     <name>Metazoa</name>
  34                     <taxonomy>
  35                       <id provider="uniprot">33208</id>
  36                       <scientific_name>Metazoa</scientific_name>
  37                       <rank>kingdom</rank>
  38                     </taxonomy>
  39                     <clade>
  40                       <name>Eumetazoa</name>
  41                       <reference doi="10.1038/nature06614">
  42                       </reference>
  43                       <clade>
  44                         <name>Bilateria_Cnidaria</name>
  45                         <clade>
  46                           <name>Bilateria</name>
  47                           <clade>
  48                             <name>Deuterostomia</name>
  49                             <reference doi="10.1038/nature04336">
  50                             </reference>
  51                             <clade>
  52                               <name>Chordata</name>
  53                               <taxonomy>
  54                                 <id provider="uniprot">7711</id>
  55                                 <scientific_name>Chordata</scientific_name>
  56                                 <rank>phylum</rank>
  57                               </taxonomy>
  58                               <clade>
  59                                 <name>Urochordata &amp; Vertebrata</name>
  60                                 <clade>
  61                                   <taxonomy>
  62                                     <id provider="uniprot">7742</id>
  63                                     <scientific_name>Vertebrata</scientific_name>
  64                                   </taxonomy>
  65                                   <clade>
  66                                     <taxonomy>
  67                                       <id provider="uniprot">7776</id>
  68                                       <scientific_name>Gnathostomata</scientific_name>
  69                                       <common_name>jawed vertebrates</common_name>
  70                                       <rank>superclass</rank>
  71                                     </taxonomy>
  72                                     <clade>
  73                                       <taxonomy>
  74                                         <id provider="uniprot">117571</id>
  75                                         <scientific_name>Euteleostomi</scientific_name>
  76                                       </taxonomy>
  77                                       <clade>
  78                                         <name>Tetrapoda</name>
  79                                         <clade>
  80                                           <name>Amniota</name>
  81                                           <clade>
  82                                             <taxonomy>
  83                                               <id provider="uniprot">40674</id>
  84                                               <scientific_name>Mammalia</scientific_name>
  85                                               <rank>class</rank>
  86                                             </taxonomy>
  87                                             <clade>
  88                                               <name>Theria</name>
  89                                               <clade>
  90                                                 <taxonomy>
  91                                                   <id provider="uniprot">9347</id>
  92                                                   <scientific_name>Eutheria</scientific_name>
  93                                                   <common_name>Placental mammals</common_name>
  94                                                 </taxonomy>
  95                                                 <reference doi="10.1002/bies.200900053">
  96                                                   <desc>The new framework for understanding placental mammal evolution</desc>
  97                                                 </reference>
  98                                                 <clade>
  99                                                   <taxonomy>
 100                                                     <scientific_name>Boreoeutheria</scientific_name>
 101                                                     <synonym>Boreotheria</synonym>
 102                                                   </taxonomy>
 103                                                   <clade>
 104                                                     <taxonomy>
 105                                                       <id provider="uniprot">314146</id>
 106                                                       <scientific_name>Euarchontoglires</scientific_name>
 107                                                       <rank>superorder</rank>
 108                                                     </taxonomy>
 109                                                     <clade>
 110                                                       <taxonomy>
 111                                                         <scientific_name>Euarchonta</scientific_name>
 112                                                       </taxonomy>
 113                                                       <clade>
 114                                                         <taxonomy>
 115                                                           <id provider="uniprot">9443</id>
 116                                                           <scientific_name>Primates</scientific_name>
 117                                                           <rank>order</rank>
 118                                                         </taxonomy>
 119                                                         <clade>
 120                                                           <taxonomy>
 121                                                             <id provider="uniprot">376913</id>
 122                                                             <scientific_name>Haplorrhini</scientific_name>
 123                                                             <rank>suborder</rank>
 124                                                           </taxonomy>
 125                                                           <clade>
 126                                                             <taxonomy>
 127                                                               <id provider="uniprot">314293</id>
 128                                                               <scientific_name>Simiiformes</scientific_name>
 129                                                               <rank>infraorder</rank>
 130                                                             </taxonomy>
 131                                                             <clade>
 132                                                               <taxonomy>
 133                                                                 <id provider="uniprot">9526</id>
 134                                                                 <scientific_name>Catarrhini</scientific_name>
 135                                                               </taxonomy>
 136                                                               <clade>
 137                                                                 <taxonomy>
 138                                                                   <id provider="uniprot">314295</id>
 139                                                                   <scientific_name>Hominoidea</scientific_name>
 140                                                                   <common_name>Apes</common_name>
 141                                                                   <rank>superfamily</rank>
 142                                                                 </taxonomy>
 143                                                                 <clade>
 144                                                                   <taxonomy>
 145                                                                     <id provider="uniprot">9604</id>
 146                                                                     <scientific_name>Hominidae</scientific_name>
 147                                                                     <common_name>Great apes</common_name>
 148                                                                     <rank>family</rank>
 149                                                                   </taxonomy>
 150                                                                   <clade>
 151                                                                     <taxonomy>
 152                                                                       <id provider="uniprot">207598</id>
 153                                                                       <scientific_name>Homininae</scientific_name>
 154                                                                       <rank>subfamily</rank>
 155                                                                     </taxonomy>
 156                                                                     <clade>
 157                                                                       <taxonomy>
 158                                                                         <scientific_name>Hominini</scientific_name>
 159                                                                         <rank>tribe</rank>
 160                                                                       </taxonomy>
 161                                                                       <clade>
 162                                                                         <taxonomy>
 163                                                                           <id provider="uniprot">9606</id>
 164                                                                           <code>HUMAN</code>
 165                                                                           <scientific_name>Homo sapiens</scientific_name>
 166                                                                           <common_name>Human</common_name>
 167                                                                           <rank>species</rank>
 168                                                                           <uri>http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg</uri>
 169                                                                         </taxonomy>
 170                                                                       </clade>
 171                                                                       <clade>
 172                                                                         <taxonomy>
 173                                                                           <id provider="uniprot">9598</id>
 174                                                                           <code>PANTR</code>
 175                                                                           <scientific_name>Pan troglodytes</scientific_name>
 176                                                                           <common_name>Chimpanzee</common_name>
 177                                                                           <rank>species</rank>
 178                                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg</uri>
 179                                                                         </taxonomy>
 180                                                                       </clade>
 181                                                                     </clade>
 182                                                                     <clade>
 183                                                                       <taxonomy>
 184                                                                         <id provider="uniprot">9595</id>
 185                                                                         <code>GORGO</code>
 186                                                                         <scientific_name>Gorilla gorilla gorilla</scientific_name>
 187                                                                         <common_name>Western lowland gorilla</common_name>
 188                                                                         <rank>subspecies</rank>
 189                                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/c/c7/Stavenn_Gorilla_gorilla_00.jpg</uri>
 190                                                                       </taxonomy>
 191                                                                     </clade>
 192                                                                   </clade>
 193                                                                   <clade>
 194                                                                     <taxonomy>
 195                                                                       <id provider="uniprot">9601</id>
 196                                                                       <code>PONAB</code>
 197                                                                       <scientific_name>Pongo abelii</scientific_name>
 198                                                                       <common_name>Sumatran orangutan</common_name>
 199                                                                       <synonym>Pongo pygmaeus abelii</synonym>
 200                                                                       <rank>species</rank>
 201                                                                       <uri>http://www.kidszoo.org/images/animals/orangutan.jpg</uri>
 202                                                                     </taxonomy>
 203                                                                   </clade>
 204                                                                 </clade>
 205                                                                 <clade>
 206                                                                   <taxonomy>
 207                                                                     <id provider="uniprot">61853</id>
 208                                                                     <code>NOMLE</code>
 209                                                                     <scientific_name>Nomascus leucogenys</scientific_name>
 210                                                                     <common_name>Northern white-cheeked gibbon</common_name>
 211                                                                     <synonym>Hylobates leucogenys</synonym>
 212                                                                     <synonym>Hylobates concolor leucogenys</synonym>
 213                                                                     <rank>species</rank>
 214                                                                     <uri>http://uswest.ensembl.org/img/species/pic_Nomascus_leucogenys.png</uri>
 215                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/1/1b/Hylobates_concolor2.jpg/450px-Hylobates_concolor2.jpg</uri>
 216                                                                   </taxonomy>
 217                                                                 </clade>
 218                                                               </clade>
 219                                                               <clade>
 220                                                                 <taxonomy>
 221                                                                   <id provider="uniprot">9528</id>
 222                                                                   <scientific_name>Cercopithecinae</scientific_name>
 223                                                                   <rank>subfamily</rank>
 224                                                                 </taxonomy>
 225                                                                 <clade>
 226                                                                   <taxonomy>
 227                                                                     <id provider="uniprot">9544</id>
 228                                                                     <code>MACMU</code>
 229                                                                     <scientific_name>Macaca mulatta</scientific_name>
 230                                                                     <common_name>Rhesus macaque</common_name>
 231                                                                     <rank>species</rank>
 232                                                                     <uri>http://www.biolib.cz/IMG/GAL/39329.jpg</uri>
 233                                                                   </taxonomy>
 234                                                                 </clade>
 235                                                                 <clade>
 236                                                                   <taxonomy>
 237                                                                     <id provider="uniprot">9557</id>
 238                                                                     <code>PAPHA</code>
 239                                                                     <scientific_name>Papio hamadryas</scientific_name>
 240                                                                     <common_name>Hamadryas baboon</common_name>
 241                                                                     <rank>species</rank>
 242                                                                     <uri>http://pin.primate.wisc.edu/fs/sheets/images/227lg.jpg</uri>
 243                                                                   </taxonomy>
 244                                                                 </clade>
 245                                                               </clade>
 246                                                             </clade>
 247                                                             <clade>
 248                                                               <taxonomy>
 249                                                                 <id provider="uniprot">9483</id>
 250                                                                 <code>CALJA</code>
 251                                                                 <scientific_name>Callithrix jacchus</scientific_name>
 252                                                                 <common_name>White-tufted-ear marmoset</common_name>
 253                                                                 <synonym>Callithrix jacchus jacchus</synonym>
 254                                                                 <rank>species</rank>
 255                                                                 <uri>http://www.arthurgrosset.com/mammals/photos/caljac28086.jpg</uri>
 256                                                               </taxonomy>
 257                                                             </clade>
 258                                                           </clade>
 259                                                           <clade>
 260                                                             <taxonomy>
 261                                                               <id provider="uniprot">9478</id>
 262                                                               <code>TARSY</code>
 263                                                               <scientific_name>Tarsius syrichta</scientific_name>
 264                                                               <common_name>Philippine tarsier</common_name>
 265                                                               <rank>species</rank>
 266                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0408/1425.jpeg</uri>
 267                                                             </taxonomy>
 268                                                           </clade>
 269                                                         </clade>
 270                                                         <clade>
 271                                                           <taxonomy>
 272                                                             <id provider="uniprot">376911</id>
 273                                                             <scientific_name>Strepsirrhini</scientific_name>
 274                                                             <rank>suborder</rank>
 275                                                           </taxonomy>
 276                                                           <clade>
 277                                                             <taxonomy>
 278                                                               <id provider="uniprot">30608</id>
 279                                                               <code>MICMU</code>
 280                                                               <scientific_name>Microcebus murinus</scientific_name>
 281                                                               <common_name>Lesser mouse lemur</common_name>
 282                                                               <rank>species</rank>
 283                                                               <uri>http://daniel.montagnon.pagesperso-orange.fr/images/MicrocbusMurinus.jpg</uri>
 284                                                             </taxonomy>
 285                                                           </clade>
 286                                                           <clade>
 287                                                             <taxonomy>
 288                                                               <id provider="uniprot">30611</id>
 289                                                               <code>OTOGA</code>
 290                                                               <scientific_name>Otolemur garnettii</scientific_name>
 291                                                               <common_name>Garnett&apos;s greater bushbaby</common_name>
 292                                                               <synonym>Galago garnetti</synonym>
 293                                                               <synonym>Small-eared galago</synonym>
 294                                                               <synonym>Garnett&apos;s greater bushbaby</synonym>
 295                                                               <rank>species</rank>
 296                                                               <uri>http://www.mbweni.com/images/Mbweni%20Images/naturetrail/small-earedgalago.jpg</uri>
 297                                                             </taxonomy>
 298                                                           </clade>
 299                                                         </clade>
 300                                                       </clade>
 301                                                       <clade>
 302                                                         <taxonomy>
 303                                                           <id provider="uniprot">37347</id>
 304                                                           <code>TUPBE</code>
 305                                                           <scientific_name>Tupaia belangeri</scientific_name>
 306                                                           <common_name>Common tree shrew</common_name>
 307                                                           <synonym>Tupaia glis belangeri</synonym>
 308                                                           <rank>species</rank>
 309                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/44/Tupaia_belangeri.JPG/800px-Tupaia_belangeri.JPG</uri>
 310                                                         </taxonomy>
 311                                                       </clade>
 312                                                     </clade>
 313                                                     <clade>
 314                                                       <taxonomy>
 315                                                         <id provider="uniprot">314147</id>
 316                                                         <scientific_name>Glires</scientific_name>
 317                                                         <common_name>Rodents and rabbits</common_name>
 318                                                       </taxonomy>
 319                                                       <clade>
 320                                                         <taxonomy>
 321                                                           <id provider="uniprot">9989</id>
 322                                                           <scientific_name>Rodentia</scientific_name>
 323                                                           <rank>order</rank>
 324                                                         </taxonomy>
 325                                                         <clade>
 326                                                           <name>Ctenohystrica &amp; Mouse-related clade</name>
 327                                                           <reference doi="10.1186/1471-2148-9-71">
 328                                                             <desc>Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.</desc>
 329                                                           </reference>
 330                                                           <clade>
 331                                                             <taxonomy>
 332                                                               <common_name>Mouse-related clade</common_name>
 333                                                             </taxonomy>
 334                                                             <clade>
 335                                                               <taxonomy>
 336                                                                 <id provider="uniprot">337687</id>
 337                                                                 <scientific_name>Muroidea</scientific_name>
 338                                                               </taxonomy>
 339                                                               <clade>
 340                                                                 <taxonomy>
 341                                                                   <id provider="uniprot">39107</id>
 342                                                                   <scientific_name>Murinae</scientific_name>
 343                                                                   <rank>subfamily</rank>
 344                                                                 </taxonomy>
 345                                                                 <clade>
 346                                                                   <taxonomy>
 347                                                                     <id provider="uniprot">10090</id>
 348                                                                     <code>MOUSE</code>
 349                                                                     <scientific_name>Mus musculus</scientific_name>
 350                                                                     <common_name>Mouse</common_name>
 351                                                                     <rank>species</rank>
 352                                                                     <uri>http://www.zoologi.no/patlas/images/husmus-RS.jpg</uri>
 353                                                                   </taxonomy>
 354                                                                 </clade>
 355                                                                 <clade>
 356                                                                   <taxonomy>
 357                                                                     <id provider="uniprot">10116</id>
 358                                                                     <code>RAT</code>
 359                                                                     <scientific_name>Rattus norvegicus</scientific_name>
 360                                                                     <common_name>Rat</common_name>
 361                                                                     <rank>species</rank>
 362                                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg</uri>
 363                                                                   </taxonomy>
 364                                                                 </clade>
 365                                                               </clade>
 366                                                               <clade>
 367                                                                 <taxonomy>
 368                                                                   <id provider="uniprot">10036</id>
 369                                                                   <code>MESAU</code>
 370                                                                   <scientific_name>Mesocricetus auratus</scientific_name>
 371                                                                   <common_name>Golden hamster</common_name>
 372                                                                   <rank>species</rank>
 373                                                                   <uri>http://www.zipcodezoo.com/hp350/Mesocricetus_auratus_0.jpg</uri>
 374                                                                 </taxonomy>
 375                                                               </clade>
 376                                                             </clade>
 377                                                             <clade>
 378                                                               <taxonomy>
 379                                                                 <id provider="uniprot">10020</id>
 380                                                                 <code>DIPOR</code>
 381                                                                 <scientific_name>Dipodomys ordii</scientific_name>
 382                                                                 <common_name>Ord&apos;s kangaroo rat</common_name>
 383                                                                 <rank>species</rank>
 384                                                                 <uri>http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg</uri>
 385                                                               </taxonomy>
 386                                                             </clade>
 387                                                           </clade>
 388                                                           <clade>
 389                                                             <taxonomy>
 390                                                               <id provider="uniprot">10141</id>
 391                                                               <code>CAVPO</code>
 392                                                               <scientific_name>Cavia porcellus</scientific_name>
 393                                                               <common_name>Guinea pig</common_name>
 394                                                               <rank>species</rank>
 395                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/7/77/Guinea_1.jpg</uri>
 396                                                             </taxonomy>
 397                                                           </clade>
 398                                                         </clade>
 399                                                         <clade>
 400                                                           <taxonomy>
 401                                                             <id provider="uniprot">43179</id>
 402                                                             <code>SPETR</code>
 403                                                             <scientific_name>Spermophilus tridecemlineatus</scientific_name>
 404                                                             <common_name>Thirteen-lined ground squirrel</common_name>
 405                                                             <synonym>Ictidomys tridecemlineatus</synonym>
 406                                                             <rank>species</rank>
 407                                                             <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg</uri>
 408                                                           </taxonomy>
 409                                                         </clade>
 410                                                       </clade>
 411                                                       <clade>
 412                                                         <taxonomy>
 413                                                           <id provider="uniprot">9975</id>
 414                                                           <scientific_name>Lagomorpha</scientific_name>
 415                                                           <common_name>Rabbits, hares, pikas</common_name>
 416                                                           <rank>order</rank>
 417                                                         </taxonomy>
 418                                                         <clade>
 419                                                           <taxonomy>
 420                                                             <id provider="uniprot">9978</id>
 421                                                             <code>OCHPR</code>
 422                                                             <scientific_name>Ochotona princeps</scientific_name>
 423                                                             <common_name>Southern American pika</common_name>
 424                                                             <rank>species</rank>
 425                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg</uri>
 426                                                           </taxonomy>
 427                                                         </clade>
 428                                                         <clade>
 429                                                           <taxonomy>
 430                                                             <id provider="uniprot">9986</id>
 431                                                             <code>RABIT</code>
 432                                                             <scientific_name>Oryctolagus cuniculus</scientific_name>
 433                                                             <common_name>Rabbit</common_name>
 434                                                             <rank>species</rank>
 435                                                             <uri>http://www.animalpictures.tk/wp-content/uploads/pictures/pictures-of-rabbit-pictures-818.jpg</uri>
 436                                                             <uri>http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg</uri>
 437                                                           </taxonomy>
 438                                                         </clade>
 439                                                       </clade>
 440                                                     </clade>
 441                                                   </clade>
 442                                                   <clade>
 443                                                     <taxonomy>
 444                                                       <id provider="uniprot">314145</id>
 445                                                       <scientific_name>Laurasiatheria</scientific_name>
 446                                                       <rank>superorder</rank>
 447                                                     </taxonomy>
 448                                                     <clade>
 449                                                       <taxonomy>
 450                                                         <scientific_name>Scrotifera</scientific_name>
 451                                                       </taxonomy>
 452                                                       <clade>
 453                                                         <name>Perissodactyla &amp; Cetartiodactyla &amp; Chiroptera</name>
 454                                                         <clade>
 455                                                           <name>Perissodactyla &amp; Cetartiodactyla</name>
 456                                                           <clade>
 457                                                             <taxonomy>
 458                                                               <id provider="uniprot">91561</id>
 459                                                               <scientific_name>Cetartiodactyla</scientific_name>
 460                                                               <common_name>Even-toed ungulates</common_name>
 461                                                             </taxonomy>
 462                                                             <clade>
 463                                                               <name>Cetruminantia &amp; Suina</name>
 464                                                               <clade>
 465                                                                 <taxonomy>
 466                                                                   <scientific_name>Cetruminantia</scientific_name>
 467                                                                 </taxonomy>
 468                                                                 <clade>
 469                                                                   <taxonomy>
 470                                                                     <id provider="uniprot">9895</id>
 471                                                                     <scientific_name>Bovidae</scientific_name>
 472                                                                     <rank>family</rank>
 473                                                                   </taxonomy>
 474                                                                   <clade>
 475                                                                     <taxonomy>
 476                                                                       <id provider="uniprot">9913</id>
 477                                                                       <code>BOVIN</code>
 478                                                                       <scientific_name>Bos taurus</scientific_name>
 479                                                                       <common_name>Bovine</common_name>
 480                                                                       <synonym>Bos bovis</synonym>
 481                                                                       <rank>species</rank>
 482                                                                       <uri>http://www.biolib.cz/IMG/GAL/18578.jpg</uri>
 483                                                                     </taxonomy>
 484                                                                   </clade>
 485                                                                   <clade>
 486                                                                     <taxonomy>
 487                                                                       <id provider="uniprot">9940</id>
 488                                                                       <code>SHEEP</code>
 489                                                                       <scientific_name>Ovis aries</scientific_name>
 490                                                                       <common_name>Sheep</common_name>
 491                                                                       <rank>species</rank>
 492                                                                       <uri>http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg</uri>
 493                                                                     </taxonomy>
 494                                                                   </clade>
 495                                                                 </clade>
 496                                                                 <clade>
 497                                                                   <taxonomy>
 498                                                                     <id provider="uniprot">9721</id>
 499                                                                     <scientific_name>Cetacea</scientific_name>
 500                                                                     <common_name>Whales</common_name>
 501                                                                     <rank>order</rank>
 502                                                                   </taxonomy>
 503                                                                   <clade>
 504                                                                     <taxonomy>
 505                                                                       <id provider="uniprot">9771</id>
 506                                                                       <code>BALMU</code>
 507                                                                       <scientific_name>Balaenoptera musculus</scientific_name>
 508                                                                       <common_name>Blue whale</common_name>
 509                                                                       <rank>species</rank>
 510                                                                       <uri>http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg</uri>
 511                                                                     </taxonomy>
 512                                                                   </clade>
 513                                                                   <clade>
 514                                                                     <taxonomy>
 515                                                                       <id provider="uniprot">9739</id>
 516                                                                       <code>TURTR</code>
 517                                                                       <scientific_name>Tursiops truncatus</scientific_name>
 518                                                                       <common_name>Atlantic bottle-nosed dolphin</common_name>
 519                                                                       <synonym>Delphinus truncatus</synonym>
 520                                                                       <rank>species</rank>
 521                                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg</uri>
 522                                                                     </taxonomy>
 523                                                                   </clade>
 524                                                                 </clade>
 525                                                               </clade>
 526                                                               <clade>
 527                                                                 <taxonomy>
 528                                                                   <id provider="uniprot">9823</id>
 529                                                                   <code>PIG</code>
 530                                                                   <scientific_name>Sus scrofa</scientific_name>
 531                                                                   <common_name>Pig</common_name>
 532                                                                   <rank>species</rank>
 533                                                                   <uri>http://www.batraciens-reptiles.com/sus%20scrofa2.jpg</uri>
 534                                                                 </taxonomy>
 535                                                               </clade>
 536                                                             </clade>
 537                                                             <clade>
 538                                                               <taxonomy>
 539                                                                 <id provider="uniprot">30538</id>
 540                                                                 <code>LAMPA</code>
 541                                                                 <scientific_name>Lama guanicoe pacos</scientific_name>
 542                                                                 <common_name>Alpaca</common_name>
 543                                                                 <synonym>Lama pacos</synonym>
 544                                                                 <rank>species</rank>
 545                                                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/8f/A_group_of_Alpacas_on_a_property_including_cria.jpg/800px-A_group_of_Alpacas_on_a_property_including_cria.jpg</uri>
 546                                                               </taxonomy>
 547                                                             </clade>
 548                                                           </clade>
 549                                                           <clade>
 550                                                             <taxonomy>
 551                                                               <id provider="uniprot">9796</id>
 552                                                               <code>HORSE</code>
 553                                                               <scientific_name>Equus caballus</scientific_name>
 554                                                               <common_name>Horse</common_name>
 555                                                               <rank>species</rank>
 556                                                               <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg</uri>
 557                                                             </taxonomy>
 558                                                           </clade>
 559                                                         </clade>
 560                                                         <clade>
 561                                                           <taxonomy>
 562                                                             <id provider="uniprot">9397</id>
 563                                                             <scientific_name>Chiroptera</scientific_name>
 564                                                             <common_name>Bats</common_name>
 565                                                             <rank>order</rank>
 566                                                           </taxonomy>
 567                                                           <clade>
 568                                                             <taxonomy>
 569                                                               <id provider="uniprot">59463</id>
 570                                                               <code>MYOLU</code>
 571                                                               <scientific_name>Myotis lucifugus</scientific_name>
 572                                                               <common_name>Little brown bat</common_name>
 573                                                               <rank>species</rank>
 574                                                               <uri>http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg</uri>
 575                                                             </taxonomy>
 576                                                           </clade>
 577                                                           <clade>
 578                                                             <taxonomy>
 579                                                               <id provider="uniprot">132908</id>
 580                                                               <code>PTEVA</code>
 581                                                               <scientific_name>Pteropus vampyrus</scientific_name>
 582                                                               <common_name>Large flying fox</common_name>
 583                                                               <rank>species</rank>
 584                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg</uri>
 585                                                             </taxonomy>
 586                                                           </clade>
 587                                                         </clade>
 588                                                       </clade>
 589                                                       <clade>
 590                                                         <name>Carnivora</name>
 591                                                         <taxonomy>
 592                                                           <id provider="uniprot">33554</id>
 593                                                           <scientific_name>Carnivora</scientific_name>
 594                                                           <rank>order</rank>
 595                                                         </taxonomy>
 596                                                         <clade>
 597                                                           <taxonomy>
 598                                                             <id provider="uniprot">379584</id>
 599                                                             <scientific_name>Caniformia</scientific_name>
 600                                                             <rank>suborder</rank>
 601                                                           </taxonomy>
 602                                                           <clade>
 603                                                             <taxonomy>
 604                                                               <id provider="uniprot">9646</id>
 605                                                               <code>AILME</code>
 606                                                               <scientific_name>Ailuropoda melanoleuca</scientific_name>
 607                                                               <common_name>Giant panda</common_name>
 608                                                               <rank>species</rank>
 609                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg</uri>
 610                                                             </taxonomy>
 611                                                           </clade>
 612                                                           <clade>
 613                                                             <name>CANFA</name>
 614                                                             <taxonomy>
 615                                                               <id provider="uniprot">9615</id>
 616                                                               <code>CANFA</code>
 617                                                               <scientific_name>Canis familiaris</scientific_name>
 618                                                               <common_name>Dog</common_name>
 619                                                               <synonym>Canis lupus familiaris</synonym>
 620                                                               <rank>subspecies</rank>
 621                                                               <uri>http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG</uri>
 622                                                             </taxonomy>
 623                                                           </clade>
 624                                                         </clade>
 625                                                         <clade>
 626                                                           <name>FELCA</name>
 627                                                           <taxonomy>
 628                                                             <id provider="uniprot">9685</id>
 629                                                             <code>FELCA</code>
 630                                                             <scientific_name>Felis catus</scientific_name>
 631                                                             <common_name>Cat</common_name>
 632                                                             <synonym>Felis silvestris catus</synonym>
 633                                                             <rank>species</rank>
 634                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg</uri>
 635                                                           </taxonomy>
 636                                                         </clade>
 637                                                       </clade>
 638                                                     </clade>
 639                                                     <clade>
 640                                                       <taxonomy>
 641                                                         <id provider="uniprot">9362</id>
 642                                                         <scientific_name>Insectivora</scientific_name>
 643                                                         <common_name>hedgehogs, shrews, moles and others</common_name>
 644                                                         <rank>order</rank>
 645                                                       </taxonomy>
 646                                                       <clade>
 647                                                         <taxonomy>
 648                                                           <id provider="uniprot">9365</id>
 649                                                           <code>ERIEU</code>
 650                                                           <scientific_name>Erinaceus europaeus</scientific_name>
 651                                                           <common_name>Western European hedgehog</common_name>
 652                                                           <rank>species</rank>
 653                                                           <uri>http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg</uri>
 654                                                         </taxonomy>
 655                                                       </clade>
 656                                                       <clade>
 657                                                         <taxonomy>
 658                                                           <id provider="uniprot">42254</id>
 659                                                           <code>SORAR</code>
 660                                                           <scientific_name>Sorex araneus</scientific_name>
 661                                                           <common_name>Eurasian common shrew</common_name>
 662                                                           <synonym>European shrew</synonym>
 663                                                           <rank>species</rank>
 664                                                           <uri>http://www.batraciens-reptiles.com/musaraigne2.jpg</uri>
 665                                                         </taxonomy>
 666                                                       </clade>
 667                                                     </clade>
 668                                                   </clade>
 669                                                 </clade>
 670                                                 <clade>
 671                                                   <taxonomy>
 672                                                     <scientific_name>Atlantogenata</scientific_name>
 673                                                   </taxonomy>
 674                                                   <clade>
 675                                                     <taxonomy>
 676                                                       <id provider="uniprot">311790</id>
 677                                                       <scientific_name>Afrotheria</scientific_name>
 678                                                       <rank>superorder</rank>
 679                                                     </taxonomy>
 680                                                     <clade>
 681                                                       <taxonomy>
 682                                                         <scientific_name>Paenungulata</scientific_name>
 683                                                       </taxonomy>
 684                                                       <clade>
 685                                                         <taxonomy>
 686                                                           <id provider="uniprot">9785</id>
 687                                                           <code>LOXAF</code>
 688                                                           <scientific_name>Loxodonta africana</scientific_name>
 689                                                           <common_name>African savanna elephant</common_name>
 690                                                           <rank>species</rank>
 691                                                           <uri>http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg</uri>
 692                                                         </taxonomy>
 693                                                       </clade>
 694                                                       <clade>
 695                                                         <taxonomy>
 696                                                           <id provider="uniprot">9813</id>
 697                                                           <code>PROCA</code>
 698                                                           <scientific_name>Procavia capensis</scientific_name>
 699                                                           <common_name>Cape hyrax</common_name>
 700                                                           <synonym>Rock dassie</synonym>
 701                                                           <rank>species</rank>
 702                                                           <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg</uri>
 703                                                         </taxonomy>
 704                                                       </clade>
 705                                                     </clade>
 706                                                     <clade>
 707                                                       <taxonomy>
 708                                                         <id provider="uniprot">9371</id>
 709                                                         <code>ECHTE</code>
 710                                                         <scientific_name>Echinops telfairi</scientific_name>
 711                                                         <common_name>Lesser hedgehog tenrec</common_name>
 712                                                         <rank>species</rank>
 713                                                         <uri>http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg</uri>
 714                                                       </taxonomy>
 715                                                     </clade>
 716                                                   </clade>
 717                                                   <clade>
 718                                                     <taxonomy>
 719                                                       <id provider="uniprot">9348</id>
 720                                                       <scientific_name>Xenarthra</scientific_name>
 721                                                       <synonym>Edentata</synonym>
 722                                                       <rank>superorder</rank>
 723                                                     </taxonomy>
 724                                                     <clade>
 725                                                       <taxonomy>
 726                                                         <id provider="uniprot">9358</id>
 727                                                         <code>CHOHO</code>
 728                                                         <scientific_name>Choloepus hoffmanni</scientific_name>
 729                                                         <common_name>Hoffmann&apos;s two-fingered sloth</common_name>
 730                                                         <rank>species</rank>
 731                                                         <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg</uri>
 732                                                       </taxonomy>
 733                                                     </clade>
 734                                                     <clade>
 735                                                       <taxonomy>
 736                                                         <id provider="uniprot">9361</id>
 737                                                         <code>DASNO</code>
 738                                                         <scientific_name>Dasypus novemcinctus</scientific_name>
 739                                                         <common_name>Nine-banded armadillo</common_name>
 740                                                         <rank>species</rank>
 741                                                         <uri>http://images.enature.com/mammals/mammals_l/ma0154_1l.jpg</uri>
 742                                                         <uri>http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg</uri>
 743                                                       </taxonomy>
 744                                                     </clade>
 745                                                   </clade>
 746                                                 </clade>
 747                                               </clade>
 748                                               <clade>
 749                                                 <taxonomy>
 750                                                   <id provider="uniprot">9263</id>
 751                                                   <scientific_name>Metatheria</scientific_name>
 752                                                   <common_name>Marsupials</common_name>
 753                                                 </taxonomy>
 754                                                 <distribution>
 755                                                   <point geodetic_datum="?" alt_unit="?">
 756                                                     <lat>0</lat>
 757                                                     <long>0</long>
 758                                                     <alt>0</alt>
 759                                                   </point>
 760                                                 </distribution>
 761                                                 <reference doi="10.1016/j.ympev.2004.05.004">
 762                                                   <desc>First combined cladistic analysis of marsupial mammal interrelationships</desc>
 763                                                 </reference>
 764                                                 <reference>
 765                                                 </reference>
 766                                                 <clade>
 767                                                   <taxonomy>
 768                                                     <scientific_name>Eometatheria</scientific_name>
 769                                                   </taxonomy>
 770                                                   <clade>
 771                                                     <taxonomy>
 772                                                       <id provider="uniprot">9315</id>
 773                                                       <code>MACEU</code>
 774                                                       <scientific_name>Macropus eugenii</scientific_name>
 775                                                       <common_name>Tammar wallaby</common_name>
 776                                                       <rank>species</rank>
 777                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg</uri>
 778                                                     </taxonomy>
 779                                                   </clade>
 780                                                   <clade>
 781                                                     <taxonomy>
 782                                                       <id provider="uniprot">9305</id>
 783                                                       <code>SARHA</code>
 784                                                       <scientific_name>Sarcophilus harrisii</scientific_name>
 785                                                       <common_name>Tasmanian devil</common_name>
 786                                                       <synonym>Sarcophilus laniarius</synonym>
 787                                                       <rank>species</rank>
 788                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg</uri>
 789                                                     </taxonomy>
 790                                                   </clade>
 791                                                 </clade>
 792                                                 <clade>
 793                                                   <name>MONDO</name>
 794                                                   <taxonomy>
 795                                                     <id provider="uniprot">13616</id>
 796                                                     <code>MONDO</code>
 797                                                     <scientific_name>Monodelphis domestica</scientific_name>
 798                                                     <common_name>Short-tailed gray opossum</common_name>
 799                                                     <rank>species</rank>
 800                                                     <uri>http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg</uri>
 801                                                   </taxonomy>
 802                                                 </clade>
 803                                               </clade>
 804                                             </clade>
 805                                             <clade>
 806                                               <name>ORNAN</name>
 807                                               <taxonomy>
 808                                                 <id provider="uniprot">9258</id>
 809                                                 <code>ORNAN</code>
 810                                                 <scientific_name>Ornithorhynchus anatinus</scientific_name>
 811                                                 <common_name>Duckbill platypus</common_name>
 812                                                 <rank>species</rank>
 813                                                 <uri>http://www.biolib.cz/IMG/GAL/39610.jpg</uri>
 814                                               </taxonomy>
 815                                             </clade>
 816                                           </clade>
 817                                           <clade>
 818                                             <name>Diapsida</name>
 819                                             <clade>
 820                                               <name>Neognathae</name>
 821                                               <taxonomy>
 822                                                 <id provider="uniprot">8825</id>
 823                                                 <scientific_name>Neognathae</scientific_name>
 824                                                 <rank>superorder</rank>
 825                                               </taxonomy>
 826                                               <clade>
 827                                                 <name>Phasianidae &amp; Anatidae (waterfowl)</name>
 828                                                 <clade>
 829                                                   <taxonomy>
 830                                                     <id provider="uniprot">9005</id>
 831                                                     <scientific_name>Phasianidae</scientific_name>
 832                                                     <rank>family</rank>
 833                                                   </taxonomy>
 834                                                   <clade>
 835                                                     <name>CHICK</name>
 836                                                     <taxonomy>
 837                                                       <id provider="uniprot">9031</id>
 838                                                       <code>CHICK</code>
 839                                                       <scientific_name>Gallus gallus</scientific_name>
 840                                                       <common_name>Chicken</common_name>
 841                                                       <synonym>Gallus domesticus</synonym>
 842                                                       <rank>species</rank>
 843                                                       <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg</uri>
 844                                                     </taxonomy>
 845                                                   </clade>
 846                                                   <clade>
 847                                                     <taxonomy>
 848                                                       <id provider="uniprot">9103</id>
 849                                                       <code>MELGA</code>
 850                                                       <scientific_name>Meleagris gallopavo</scientific_name>
 851                                                       <common_name>Common turkey</common_name>
 852                                                       <rank>species</rank>
 853                                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg</uri>
 854                                                     </taxonomy>
 855                                                   </clade>
 856                                                 </clade>
 857                                                 <clade>
 858                                                   <taxonomy>
 859                                                     <id provider="uniprot">8839</id>
 860                                                     <code>ANAPL</code>
 861                                                     <scientific_name>Anas platyrhynchos</scientific_name>
 862                                                     <common_name>Domestic duck</common_name>
 863                                                     <synonym>Anas boschas</synonym>
 864                                                     <rank>species</rank>
 865                                                     <uri>http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg</uri>
 866                                                   </taxonomy>
 867                                                 </clade>
 868                                               </clade>
 869                                               <clade>
 870                                                 <name>TAEGU</name>
 871                                                 <taxonomy>
 872                                                   <id provider="uniprot">59729</id>
 873                                                   <code>TAEGU</code>
 874                                                   <scientific_name>Taeniopygia guttata</scientific_name>
 875                                                   <common_name>Zebra finch</common_name>
 876                                                   <synonym>Poephila guttata</synonym>
 877                                                   <rank>species</rank>
 878                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg</uri>
 879                                                 </taxonomy>
 880                                               </clade>
 881                                             </clade>
 882                                             <clade>
 883                                               <name>ANOCA</name>
 884                                               <taxonomy>
 885                                                 <id provider="eol">795869</id>
 886                                                 <code>ANOCA</code>
 887                                                 <scientific_name>Anolis carolinensis</scientific_name>
 888                                                 <authority>Voigt, 1832</authority>
 889                                                 <common_name>Green anole</common_name>
 890                                                 <synonym>American chameleon</synonym>
 891                                                 <rank>species</rank>
 892                                                 <uri>http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg</uri>
 893                                                 <uri>http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg</uri>
 894                                               </taxonomy>
 895                                             </clade>
 896                                           </clade>
 897                                         </clade>
 898                                         <clade>
 899                                           <name>XENTR</name>
 900                                           <taxonomy>
 901                                             <id provider="uniprot">8364</id>
 902                                             <code>XENTR</code>
 903                                             <scientific_name>Xenopus tropicalis</scientific_name>
 904                                             <common_name>Western clawed frog</common_name>
 905                                             <synonym>Silurana tropicalis</synonym>
 906                                             <rank>species</rank>
 907                                             <uri>http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg</uri>
 908                                           </taxonomy>
 909                                         </clade>
 910                                       </clade>
 911                                       <clade>
 912                                         <name>Teleostei</name>
 913                                         <taxonomy>
 914                                           <id provider="uniprot">32443</id>
 915                                           <scientific_name>Teleostei</scientific_name>
 916                                         </taxonomy>
 917                                         <clade>
 918                                           <taxonomy>
 919                                             <id provider="uniprot">123368</id>
 920                                             <scientific_name>Acanthomorpha</scientific_name>
 921                                           </taxonomy>
 922                                           <clade>
 923                                             <taxonomy>
 924                                               <id provider="uniprot">32485</id>
 925                                               <scientific_name>Percomorpha</scientific_name>
 926                                             </taxonomy>
 927                                             <clade>
 928                                               <name>Smegmamorpha</name>
 929                                               <clade>
 930                                                 <name>GASAC</name>
 931                                                 <taxonomy>
 932                                                   <id provider="uniprot">69293</id>
 933                                                   <code>GASAC</code>
 934                                                   <scientific_name>Gasterosteus aculeatus</scientific_name>
 935                                                   <common_name>Three-spined stickleback</common_name>
 936                                                   <rank>species</rank>
 937                                                   <uri>http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg</uri>
 938                                                 </taxonomy>
 939                                               </clade>
 940                                               <clade>
 941                                                 <name>ORYLA</name>
 942                                                 <taxonomy>
 943                                                   <id provider="uniprot">8090</id>
 944                                                   <code>ORYLA</code>
 945                                                   <scientific_name>Oryzias latipes</scientific_name>
 946                                                   <common_name>Medaka fish</common_name>
 947                                                   <synonym>Japanese ricefish</synonym>
 948                                                   <rank>species</rank>
 949                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg</uri>
 950                                                 </taxonomy>
 951                                               </clade>
 952                                             </clade>
 953                                             <clade>
 954                                               <taxonomy>
 955                                                 <id provider="uniprot">31031</id>
 956                                                 <scientific_name>Tetraodontidae</scientific_name>
 957                                                 <common_name>puffers</common_name>
 958                                                 <rank>family</rank>
 959                                               </taxonomy>
 960                                               <clade>
 961                                                 <name>FUGRU</name>
 962                                                 <taxonomy>
 963                                                   <id provider="uniprot">31033</id>
 964                                                   <code>FUGRU</code>
 965                                                   <scientific_name>Takifugu rubripes</scientific_name>
 966                                                   <common_name>Japanese pufferfish</common_name>
 967                                                   <synonym>Fugu rubripes</synonym>
 968                                                   <rank>species</rank>
 969                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg</uri>
 970                                                 </taxonomy>
 971                                               </clade>
 972                                               <clade>
 973                                                 <name>TETNG</name>
 974                                                 <taxonomy>
 975                                                   <id provider="uniprot">99883</id>
 976                                                   <code>TETNG</code>
 977                                                   <scientific_name>Tetraodon nigroviridis</scientific_name>
 978                                                   <common_name>Green puffer</common_name>
 979                                                   <synonym>Chelonodon nigroviridis</synonym>
 980                                                   <rank>species</rank>
 981                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg</uri>
 982                                                 </taxonomy>
 983                                               </clade>
 984                                             </clade>
 985                                           </clade>
 986                                           <clade>
 987                                             <taxonomy>
 988                                               <id provider="uniprot">8049</id>
 989                                               <code>GADMO</code>
 990                                               <scientific_name>Gadus morhua</scientific_name>
 991                                               <common_name>Atlantic cod</common_name>
 992                                               <rank>species</rank>
 993                                               <uri>http://www.marinbi.com/g-morhua.jpg</uri>
 994                                             </taxonomy>
 995                                           </clade>
 996                                         </clade>
 997                                         <clade>
 998                                           <name>DANRE</name>
 999                                           <taxonomy>
1000                                             <id provider="uniprot">7955</id>
1001                                             <code>DANRE</code>
1002                                             <scientific_name>Danio rerio</scientific_name>
1003                                             <common_name>Zebrafish</common_name>
1004                                             <synonym>Brachydanio rerio</synonym>
1005                                             <rank>species</rank>
1006                                             <uri>http://fishbase.org.cn/images/species/Darer_m0.jpg</uri>
1007                                           </taxonomy>
1008                                         </clade>
1009                                       </clade>
1010                                     </clade>
1011                                     <clade>
1012                                       <taxonomy>
1013                                         <id provider="uniprot">7868</id>
1014                                         <code>CALMI</code>
1015                                         <scientific_name>Callorhynchus milii</scientific_name>
1016                                         <common_name>Australian ghost shark</common_name>
1017                                         <synonym>Australian ghost shark</synonym>
1018                                         <rank>species</rank>
1019                                         <uri>http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg</uri>
1020                                       </taxonomy>
1021                                     </clade>
1022                                   </clade>
1023                                   <clade>
1024                                     <taxonomy>
1025                                       <id provider="uniprot">7757</id>
1026                                       <code>PETMA</code>
1027                                       <scientific_name>Petromyzon marinus</scientific_name>
1028                                       <common_name>Sea lamprey</common_name>
1029                                       <rank>species</rank>
1030                                       <uri>http://www.uk-fish.info/pics/sealampray01.jpg</uri>
1031                                     </taxonomy>
1032                                   </clade>
1033                                 </clade>
1034                                 <clade>
1035                                   <name>Urochordata</name>
1036                                   <taxonomy>
1037                                     <id provider="uniprot">7712</id>
1038                                     <scientific_name>Urochordata</scientific_name>
1039                                     <rank>subphylum</rank>
1040                                   </taxonomy>
1041                                   <clade>
1042                                     <taxonomy>
1043                                       <id provider="uniprot">7718</id>
1044                                       <scientific_name>Ciona</scientific_name>
1045                                       <rank>genus</rank>
1046                                     </taxonomy>
1047                                     <clade>
1048                                       <name>CIOIN</name>
1049                                       <taxonomy>
1050                                         <id provider="uniprot">7719</id>
1051                                         <code>CIOIN</code>
1052                                         <scientific_name>Ciona intestinalis</scientific_name>
1053                                         <common_name>Transparent sea squirt</common_name>
1054                                         <synonym>Ascidia intestinalis</synonym>
1055                                         <rank>species</rank>
1056                                         <uri>http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg</uri>
1057                                       </taxonomy>
1058                                     </clade>
1059                                     <clade>
1060                                       <name>CIOSA</name>
1061                                       <taxonomy>
1062                                         <id provider="uniprot">51511</id>
1063                                         <code>CIOSA</code>
1064                                         <scientific_name>Ciona savignyi</scientific_name>
1065                                         <common_name>Pacific transparent sea squirt</common_name>
1066                                         <rank>species</rank>
1067                                         <uri>http://www.pnwscuba.com/invasives/photos/ciona4.jpg</uri>
1068                                       </taxonomy>
1069                                     </clade>
1070                                   </clade>
1071                                   <clade>
1072                                     <name>OIKDI</name>
1073                                     <taxonomy>
1074                                       <id provider="ncbi">34765</id>
1075                                       <code>OIKDI</code>
1076                                       <scientific_name>Oikopleura dioica</scientific_name>
1077                                       <common_name>Tunicate</common_name>
1078                                       <rank>species</rank>
1079                                       <uri>http://jellieszone.com/images/oikopleura.jpg</uri>
1080                                     </taxonomy>
1081                                   </clade>
1082                                 </clade>
1083                               </clade>
1084                               <clade>
1085                                 <name>BRAFL</name>
1086                                 <taxonomy>
1087                                   <id provider="uniprot">7739</id>
1088                                   <code>BRAFL</code>
1089                                   <scientific_name>Branchiostoma floridae</scientific_name>
1090                                   <common_name>Florida lancelet</common_name>
1091                                   <synonym>Amphioxus</synonym>
1092                                   <rank>species</rank>
1093                                   <uri>http://genome.jgi-psf.org/Brafl1/Amphioxus-1.jpg</uri>
1094                                 </taxonomy>
1095                               </clade>
1096                             </clade>
1097                             <clade>
1098                               <name>Hemichordata &amp; Echinodermata</name>
1099                               <clade>
1100                                 <name>SACKO</name>
1101                                 <taxonomy>
1102                                   <id provider="uniprot">10224</id>
1103                                   <code>SACKO</code>
1104                                   <scientific_name>Saccoglossus kowalevskii</scientific_name>
1105                                   <authority>Agassiz, 1873</authority>
1106                                   <common_name>Acorn worm</common_name>
1107                                   <rank>species</rank>
1108                                   <uri>http://www.amnh.org/exhibitions/hall_tour/spectrum/specimens/a158.jpg</uri>
1109                                 </taxonomy>
1110                               </clade>
1111                               <clade>
1112                                 <name>STRPU</name>
1113                                 <taxonomy>
1114                                   <id provider="uniprot">7668</id>
1115                                   <code>STRPU</code>
1116                                   <scientific_name>Strongylocentrotus purpuratus</scientific_name>
1117                                   <common_name>Purple sea urchin</common_name>
1118                                   <rank>species</rank>
1119                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg</uri>
1120                                 </taxonomy>
1121                               </clade>
1122                             </clade>
1123                           </clade>
1124                           <clade>
1125                             <name>Protostomia</name>
1126                             <clade>
1127                               <name>Ecdysozoa</name>
1128                               <clade>
1129                                 <taxonomy>
1130                                   <id provider="uniprot">6656</id>
1131                                   <scientific_name>Arthropoda</scientific_name>
1132                                   <rank>phylum</rank>
1133                                 </taxonomy>
1134                                 <clade>
1135                                   <taxonomy>
1136                                     <id provider="uniprot">197563</id>
1137                                     <scientific_name>Mandibulata</scientific_name>
1138                                   </taxonomy>
1139                                   <clade>
1140                                     <name>Pancrustacea</name>
1141                                     <clade>
1142                                       <taxonomy>
1143                                         <id provider="uniprot">33340</id>
1144                                         <scientific_name>Neoptera</scientific_name>
1145                                         <rank>subclass</rank>
1146                                       </taxonomy>
1147                                       <clade>
1148                                         <taxonomy>
1149                                           <id provider="uniprot">33392</id>
1150                                           <scientific_name>Endopterygota</scientific_name>
1151                                           <rank>infraclass</rank>
1152                                         </taxonomy>
1153                                         <clade>
1154                                           <name>Hymenoptera &amp; Lepidoptera &amp; Diptera</name>
1155                                           <clade>
1156                                             <name>Lepidoptera &amp; Diptera</name>
1157                                             <clade>
1158                                               <taxonomy>
1159                                                 <id provider="uniprot">7147</id>
1160                                                 <scientific_name>Diptera</scientific_name>
1161                                                 <rank>order</rank>
1162                                               </taxonomy>
1163                                               <clade>
1164                                                 <taxonomy>
1165                                                   <id provider="uniprot">7157</id>
1166                                                   <scientific_name>Culicidae</scientific_name>
1167                                                   <common_name>mosquitos</common_name>
1168                                                   <rank>family</rank>
1169                                                 </taxonomy>
1170                                                 <clade>
1171                                                   <name>AEDAE</name>
1172                                                   <taxonomy>
1173                                                     <id provider="uniprot">7159</id>
1174                                                     <code>AEDAE</code>
1175                                                     <scientific_name>Aedes aegypti</scientific_name>
1176                                                     <common_name>Yellowfever mosquito</common_name>
1177                                                     <synonym>Culex aegypti</synonym>
1178                                                     <rank>species</rank>
1179                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg</uri>
1180                                                   </taxonomy>
1181                                                 </clade>
1182                                                 <clade>
1183                                                   <name>ANOGA</name>
1184                                                   <taxonomy>
1185                                                     <id provider="uniprot">7165</id>
1186                                                     <code>ANOGA</code>
1187                                                     <scientific_name>Anopheles gambiae</scientific_name>
1188                                                     <common_name>African malaria mosquito</common_name>
1189                                                     <rank>species</rank>
1190                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg</uri>
1191                                                   </taxonomy>
1192                                                 </clade>
1193                                                 <clade>
1194                                                   <name>CULPI</name>
1195                                                   <taxonomy>
1196                                                     <id provider="uniprot">7175</id>
1197                                                     <code>CULPI</code>
1198                                                     <scientific_name>Culex pipiens</scientific_name>
1199                                                     <common_name>House mosquito</common_name>
1200                                                     <rank>species</rank>
1201                                                     <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg</uri>
1202                                                   </taxonomy>
1203                                                 </clade>
1204                                               </clade>
1205                                               <clade>
1206                                                 <taxonomy>
1207                                                   <id provider="uniprot">32341</id>
1208                                                   <scientific_name>Sophophora</scientific_name>
1209                                                   <rank>subgenus</rank>
1210                                                 </taxonomy>
1211                                                 <clade>
1212                                                   <name>DROME</name>
1213                                                   <taxonomy>
1214                                                     <id provider="uniprot">7227</id>
1215                                                     <code>DROME</code>
1216                                                     <scientific_name>Drosophila melanogaster</scientific_name>
1217                                                     <common_name>Fruit fly</common_name>
1218                                                     <rank>species</rank>
1219                                                   </taxonomy>
1220                                                 </clade>
1221                                                 <clade>
1222                                                   <name>DROPS</name>
1223                                                   <taxonomy>
1224                                                     <id provider="uniprot">46245</id>
1225                                                     <code>DROPS</code>
1226                                                     <scientific_name>Drosophila pseudoobscura pseudoobscura</scientific_name>
1227                                                     <common_name>Fruit fly</common_name>
1228                                                     <rank>subspecies</rank>
1229                                                   </taxonomy>
1230                                                 </clade>
1231                                               </clade>
1232                                             </clade>
1233                                             <clade>
1234                                               <name>BOMMO</name>
1235                                               <taxonomy>
1236                                                 <id provider="uniprot">7091</id>
1237                                                 <code>BOMMO</code>
1238                                                 <scientific_name>Bombyx mori</scientific_name>
1239                                                 <common_name>Silk moth</common_name>
1240                                                 <rank>species</rank>
1241                                               </taxonomy>
1242                                             </clade>
1243                                           </clade>
1244                                           <clade>
1245                                             <taxonomy>
1246                                               <id provider="uniprot">7400</id>
1247                                               <scientific_name>Apocrita</scientific_name>
1248                                               <common_name>wasps, ants and bees</common_name>
1249                                             </taxonomy>
1250                                             <clade>
1251                                               <name>APIME</name>
1252                                               <taxonomy>
1253                                                 <id provider="uniprot">7460</id>
1254                                                 <code>APIME</code>
1255                                                 <scientific_name>Apis mellifera</scientific_name>
1256                                                 <common_name>Honeybee</common_name>
1257                                                 <rank>species</rank>
1258                                               </taxonomy>
1259                                             </clade>
1260                                             <clade>
1261                                               <name>NASVI</name>
1262                                               <taxonomy>
1263                                                 <id provider="uniprot">7425</id>
1264                                                 <code>NASVI</code>
1265                                                 <scientific_name>Nasonia vitripennis</scientific_name>
1266                                                 <common_name>Parasitic wasp</common_name>
1267                                                 <rank>species</rank>
1268                                               </taxonomy>
1269                                             </clade>
1270                                           </clade>
1271                                         </clade>
1272                                         <clade>
1273                                           <name>TRICA</name>
1274                                           <taxonomy>
1275                                             <id provider="uniprot">7070</id>
1276                                             <code>TRICA</code>
1277                                             <scientific_name>Tribolium castaneum</scientific_name>
1278                                             <common_name>Red flour beetle</common_name>
1279                                             <rank>species</rank>
1280                                           </taxonomy>
1281                                         </clade>
1282                                       </clade>
1283                                       <clade>
1284                                         <taxonomy>
1285                                           <id provider="uniprot">7524</id>
1286                                           <scientific_name>Hemiptera</scientific_name>
1287                                           <rank>order</rank>
1288                                         </taxonomy>
1289                                         <clade>
1290                                           <name>ACYPI</name>
1291                                           <taxonomy>
1292                                             <id provider="uniprot">7029</id>
1293                                             <code>ACYPI</code>
1294                                             <scientific_name>Acyrthosiphon pisum</scientific_name>
1295                                             <common_name>Pea aphid</common_name>
1296                                             <rank>species</rank>
1297                                           </taxonomy>
1298                                         </clade>
1299                                         <clade>
1300                                           <name>RHOPR</name>
1301                                           <taxonomy>
1302                                             <id provider="uniprot">13249</id>
1303                                             <code>RHOPR</code>
1304                                             <scientific_name>Rhodnius prolixus</scientific_name>
1305                                             <common_name>Triatomid bug</common_name>
1306                                             <rank>species</rank>
1307                                             <uri>http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg</uri>
1308                                           </taxonomy>
1309                                         </clade>
1310                                       </clade>
1311                                     </clade>
1312                                     <clade>
1313                                       <taxonomy>
1314                                         <id provider="uniprot">6658</id>
1315                                         <scientific_name>Branchiopoda</scientific_name>
1316                                         <rank>class</rank>
1317                                       </taxonomy>
1318                                       <clade>
1319                                         <taxonomy>
1320                                           <id provider="uniprot">6661</id>
1321                                           <code>ARTSF</code>
1322                                           <scientific_name>Artemia franciscana</scientific_name>
1323                                           <common_name>Brine shrimp</common_name>
1324                                           <synonym>Artemia sanfranciscana</synonym>
1325                                           <rank>species</rank>
1326                                           <uri>http://www.alireza-asem.ir/images/Artemia.jpg</uri>
1327                                         </taxonomy>
1328                                       </clade>
1329                                       <clade>
1330                                         <name>DAPPU</name>
1331                                         <taxonomy>
1332                                           <id provider="uniprot">6669</id>
1333                                           <code>DAPPU</code>
1334                                           <scientific_name>Daphnia pulex</scientific_name>
1335                                           <common_name>Water flea</common_name>
1336                                           <rank>species</rank>
1337                                           <uri>http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg</uri>
1338                                         </taxonomy>
1339                                       </clade>
1340                                     </clade>
1341                                   </clade>
1342                                   <clade>
1343                                     <taxonomy>
1344                                       <id provider="uniprot">61985</id>
1345                                       <scientific_name>Myriapoda</scientific_name>
1346                                       <rank>subphylum</rank>
1347                                     </taxonomy>
1348                                     <clade>
1349                                       <taxonomy>
1350                                         <id provider="uniprot">7553</id>
1351                                         <scientific_name>Diplopoda</scientific_name>
1352                                         <common_name>millipedes</common_name>
1353                                         <rank>class</rank>
1354                                       </taxonomy>
1355                                       <clade>
1356                                         <taxonomy>
1357                                           <id provider="uniprot">118561</id>
1358                                           <scientific_name>Helminthomorpha</scientific_name>
1359                                           <rank>subclass</rank>
1360                                         </taxonomy>
1361                                         <clade>
1362                                           <taxonomy>
1363                                             <id provider="uniprot">364406</id>
1364                                             <scientific_name>Antrokoreana gracilipes</scientific_name>
1365                                             <rank>species</rank>
1366                                             <uri>http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg</uri>
1367                                           </taxonomy>
1368                                         </clade>
1369                                         <clade>
1370                                           <taxonomy>
1371                                             <id provider="uniprot">174156</id>
1372                                             <code>NARAN</code>
1373                                             <scientific_name>Narceus annularis</scientific_name>
1374                                             <common_name>Millipede</common_name>
1375                                             <rank>species</rank>
1376                                             <uri>http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg</uri>
1377                                           </taxonomy>
1378                                         </clade>
1379                                       </clade>
1380                                       <clade>
1381                                         <taxonomy>
1382                                           <id provider="uniprot">52428</id>
1383                                           <scientific_name>Polyxenus lagurus</scientific_name>
1384                                           <common_name>bristly millipede</common_name>
1385                                           <rank>species</rank>
1386                                           <uri>http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg</uri>
1387                                         </taxonomy>
1388                                       </clade>
1389                                     </clade>
1390                                     <clade>
1391                                       <taxonomy>
1392                                         <id provider="uniprot">7540</id>
1393                                         <scientific_name>Chilopoda</scientific_name>
1394                                         <common_name>centipedes</common_name>
1395                                         <rank>class</rank>
1396                                       </taxonomy>
1397                                       <clade>
1398                                         <taxonomy>
1399                                           <id provider="uniprot">29022</id>
1400                                           <code>SCUCO</code>
1401                                           <scientific_name>Scutigera coleoptrata</scientific_name>
1402                                           <common_name>House centipede</common_name>
1403                                           <rank>species</rank>
1404                                           <uri>http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG</uri>
1405                                         </taxonomy>
1406                                       </clade>
1407                                       <clade>
1408                                         <taxonomy>
1409                                           <id provider="uniprot">126957</id>
1410                                           <scientific_name>Strigamia maritima</scientific_name>
1411                                           <rank>species</rank>
1412                                           <uri>http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg</uri>
1413                                         </taxonomy>
1414                                       </clade>
1415                                     </clade>
1416                                   </clade>
1417                                 </clade>
1418                                 <clade>
1419                                   <name>IXOSC</name>
1420                                   <taxonomy>
1421                                     <id provider="uniprot">6945</id>
1422                                     <code>IXOSC</code>
1423                                     <scientific_name>Ixodes scapularis</scientific_name>
1424                                     <common_name>Black-legged tick</common_name>
1425                                     <synonym>Deer tick</synonym>
1426                                     <rank>species</rank>
1427                                     <uri>http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg</uri>
1428                                   </taxonomy>
1429                                 </clade>
1430                               </clade>
1431                               <clade>
1432                                 <taxonomy>
1433                                   <id provider="uniprot">119089</id>
1434                                   <scientific_name>Chromadorea</scientific_name>
1435                                   <rank>class</rank>
1436                                 </taxonomy>
1437                                 <reference doi="10.1038/32160">
1438                                 </reference>
1439                                 <clade>
1440                                   <name>nematode Clade V</name>
1441                                   <clade>
1442                                     <name>Caenorhabditis</name>
1443                                     <taxonomy>
1444                                       <id provider="uniprot">6237</id>
1445                                       <scientific_name>Caenorhabditis</scientific_name>
1446                                       <rank>genus</rank>
1447                                     </taxonomy>
1448                                     <clade>
1449                                       <name>CAEBR</name>
1450                                       <taxonomy>
1451                                         <id provider="uniprot">6238</id>
1452                                         <code>CAEBR</code>
1453                                         <scientific_name>Caenorhabditis briggsae</scientific_name>
1454                                         <rank>species</rank>
1455                                       </taxonomy>
1456                                     </clade>
1457                                     <clade>
1458                                       <name>CAEEL</name>
1459                                       <taxonomy>
1460                                         <id provider="uniprot">6239</id>
1461                                         <code>CAEEL</code>
1462                                         <scientific_name>Caenorhabditis elegans</scientific_name>
1463                                         <rank>species</rank>
1464                                       </taxonomy>
1465                                     </clade>
1466                                   </clade>
1467                                   <clade>
1468                                     <name>PRIPA</name>
1469                                     <taxonomy>
1470                                       <id provider="uniprot">54126</id>
1471                                       <code>PRIPA</code>
1472                                       <scientific_name>Pristionchus pacificus</scientific_name>
1473                                       <rank>species</rank>
1474                                     </taxonomy>
1475                                   </clade>
1476                                 </clade>
1477                                 <clade>
1478                                   <name>BRUMA</name>
1479                                   <taxonomy>
1480                                     <id provider="uniprot">6279</id>
1481                                     <code>BRUMA</code>
1482                                     <scientific_name>Brugia malayi</scientific_name>
1483                                     <common_name>Filarial nematode worm</common_name>
1484                                     <rank>species</rank>
1485                                   </taxonomy>
1486                                 </clade>
1487                               </clade>
1488                             </clade>
1489                             <clade>
1490                               <name>Lophotrochozoa</name>
1491                               <clade>
1492                                 <name>Annelida &amp; Mollusca</name>
1493                                 <clade>
1494                                   <taxonomy>
1495                                     <id provider="uniprot">6340</id>
1496                                     <scientific_name>Annelida</scientific_name>
1497                                     <rank>phylum</rank>
1498                                   </taxonomy>
1499                                   <clade>
1500                                     <name>CAP</name>
1501                                     <taxonomy>
1502                                       <id provider="uniprot">283909</id>
1503                                       <scientific_name>Capitella teleta</scientific_name>
1504                                       <rank>species</rank>
1505                                     </taxonomy>
1506                                   </clade>
1507                                   <clade>
1508                                     <name>HELRO</name>
1509                                     <taxonomy>
1510                                       <id provider="uniprot">6412</id>
1511                                       <code>HELRO</code>
1512                                       <scientific_name>Helobdella robusta</scientific_name>
1513                                       <common_name>Californian leech</common_name>
1514                                       <rank>species</rank>
1515                                     </taxonomy>
1516                                   </clade>
1517                                 </clade>
1518                                 <clade>
1519                                   <name>LOTGI</name>
1520                                   <taxonomy>
1521                                     <id provider="uniprot">225164</id>
1522                                     <code>LOTGI</code>
1523                                     <scientific_name>Lottia gigantea</scientific_name>
1524                                     <common_name>Owl limpet</common_name>
1525                                     <rank>species</rank>
1526                                   </taxonomy>
1527                                 </clade>
1528                               </clade>
1529                               <clade>
1530                                 <taxonomy>
1531                                   <id provider="uniprot">6157</id>
1532                                   <scientific_name>Platyhelminthes</scientific_name>
1533                                   <rank>phylum</rank>
1534                                 </taxonomy>
1535                                 <clade>
1536                                   <name>SCHMA</name>
1537                                   <taxonomy>
1538                                     <id provider="uniprot">6183</id>
1539                                     <code>SCHMA</code>
1540                                     <scientific_name>Schistosoma mansoni</scientific_name>
1541                                     <common_name>Blood fluke</common_name>
1542                                     <rank>species</rank>
1543                                   </taxonomy>
1544                                 </clade>
1545                                 <clade>
1546                                   <name>SCHMD</name>
1547                                   <taxonomy>
1548                                     <id provider="uniprot">79327</id>
1549                                     <code>SCHMD</code>
1550                                     <scientific_name>Schmidtea mediterranea</scientific_name>
1551                                     <common_name>Freshwater planarian flatworm</common_name>
1552                                     <rank>species</rank>
1553                                   </taxonomy>
1554                                 </clade>
1555                               </clade>
1556                             </clade>
1557                           </clade>
1558                         </clade>
1559                         <clade>
1560                           <name>Cnidaria</name>
1561                           <taxonomy>
1562                             <id provider="uniprot">6073</id>
1563                             <scientific_name>Cnidaria</scientific_name>
1564                             <rank>phylum</rank>
1565                           </taxonomy>
1566                           <clade>
1567                             <name>HYDMA</name>
1568                             <taxonomy>
1569                               <id provider="eol">9119928</id>
1570                               <code>HYDMA</code>
1571                               <scientific_name>Hydra magnipapillata</scientific_name>
1572                               <authority>Ito, 1947</authority>
1573                               <rank>species</rank>
1574                               <uri>http://www.nig.ac.jp/labs/OntoGen/magni.html</uri>
1575                             </taxonomy>
1576                           </clade>
1577                           <clade>
1578                             <name>NEMVE</name>
1579                             <taxonomy>
1580                               <id provider="uniprot">45351</id>
1581                               <code>NEMVE</code>
1582                               <scientific_name>Nematostella vectensis</scientific_name>
1583                               <common_name>Starlet sea anemone</common_name>
1584                               <rank>species</rank>
1585                             </taxonomy>
1586                           </clade>
1587                         </clade>
1588                       </clade>
1589                       <clade>
1590                         <name>TRIAD</name>
1591                         <taxonomy>
1592                           <id provider="uniprot">10228</id>
1593                           <code>TRIAD</code>
1594                           <scientific_name>Trichoplax adhaerens</scientific_name>
1595                           <synonym>Trichoplax reptans</synonym>
1596                           <rank>species</rank>
1597                         </taxonomy>
1598                         <reference doi="10.1073/pnas.0602076103">
1599                         </reference>
1600                       </clade>
1601                     </clade>
1602                     <clade>
1603                       <name>AMPQU</name>
1604                       <taxonomy>
1605                         <id provider="uniprot">400682</id>
1606                         <code>AMPQU</code>
1607                         <scientific_name>Amphimedon queenslandica</scientific_name>
1608                         <rank>species</rank>
1609                       </taxonomy>
1610                     </clade>
1611                   </clade>
1612                   <clade>
1613                     <taxonomy>
1614                       <id provider="uniprot">81524</id>
1615                       <scientific_name>Codonosigidae</scientific_name>
1616                       <rank>family</rank>
1617                     </taxonomy>
1618                     <clade>
1619                       <name>MONBE</name>
1620                       <taxonomy>
1621                         <id provider="uniprot">81824</id>
1622                         <code>MONBE</code>
1623                         <scientific_name>Monosiga brevicollis</scientific_name>
1624                         <common_name>Choanoflagellate</common_name>
1625                         <rank>species</rank>
1626                       </taxonomy>
1627                     </clade>
1628                     <clade>
1629                       <taxonomy>
1630                         <id provider="uniprot">946362</id>
1631                         <code>SALS5</code>
1632                         <scientific_name>Salpingoeca rosetta</scientific_name>
1633                         <synonym>Proterospongia sp. ATCC 50818</synonym>
1634                         <synonym>Salpingoeca sp. ATCC 50818</synonym>
1635                         <rank>species</rank>
1636                       </taxonomy>
1637                     </clade>
1638                   </clade>
1639                 </clade>
1640                 <clade>
1641                   <name>Ichthyophonida &amp; Filasterea</name>
1642                   <clade>
1643                     <taxonomy>
1644                       <id provider="uniprot">198625</id>
1645                       <scientific_name>Ichthyophonida</scientific_name>
1646                       <rank>order</rank>
1647                     </taxonomy>
1648                     <clade>
1649                       <taxonomy>
1650                         <id provider="uniprot">4881</id>
1651                         <code>AMOPA</code>
1652                         <scientific_name>Amoebidium parasiticum</scientific_name>
1653                         <rank>species</rank>
1654                         <uri>http://www.diark.org/img/species_pict/Amoebidium_parasiticum</uri>
1655                       </taxonomy>
1656                     </clade>
1657                     <clade>
1658                       <name>SPHARC</name>
1659                       <taxonomy>
1660                         <id provider="uniprot">72019</id>
1661                         <scientific_name>Sphaeroforma arctica</scientific_name>
1662                         <rank>species</rank>
1663                         <uri>http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg</uri>
1664                       </taxonomy>
1665                     </clade>
1666                   </clade>
1667                   <clade>
1668                     <taxonomy>
1669                       <scientific_name>Filasterea</scientific_name>
1670                     </taxonomy>
1671                     <reference doi="10.1371/journal.pone.0002098">
1672                     </reference>
1673                     <reference>
1674                     </reference>
1675                     <clade>
1676                       <name>CAPOWC</name>
1677                       <taxonomy>
1678                         <id provider="uniprot">192875</id>
1679                         <scientific_name>Capsaspora owczarzaki</scientific_name>
1680                         <rank>species</rank>
1681                       </taxonomy>
1682                     </clade>
1683                     <clade>
1684                       <name>MINVIB</name>
1685                       <taxonomy>
1686                         <id provider="uniprot">134558</id>
1687                         <scientific_name>Ministeria vibrans</scientific_name>
1688                         <rank>species</rank>
1689                       </taxonomy>
1690                     </clade>
1691                   </clade>
1692                 </clade>
1693               </clade>
1694               <clade>
1695                 <taxonomy>
1696                   <scientific_name>Holomycota</scientific_name>
1697                   <synonym>Nucletmycea</synonym>
1698                 </taxonomy>
1699                 <clade>
1700                   <taxonomy>
1701                     <id provider="uniprot">4751</id>
1702                     <scientific_name>Fungi</scientific_name>
1703                     <rank>kingdom</rank>
1704                   </taxonomy>
1705                   <clade>
1706                     <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota &amp; Neocallimastigomycota</name>
1707                     <clade>
1708                       <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota &amp; Chytridiomycota</name>
1709                       <clade>
1710                         <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina &amp; Blastocladiomycota</name>
1711                         <clade>
1712                           <name>Dikarya &amp; Mucoromycotina &amp; Kickxellomycotina</name>
1713                           <clade>
1714                             <name>Dikarya &amp; Mucoromycotina</name>
1715                             <clade>
1716                               <taxonomy>
1717                                 <id provider="uniprot">451864</id>
1718                                 <scientific_name>Dikarya</scientific_name>
1719                                 <rank>subkingdom</rank>
1720                               </taxonomy>
1721                               <reference doi="10.1038/nature05110">
1722                               </reference>
1723                               <reference>
1724                               </reference>
1725                               <clade>
1726                                 <taxonomy>
1727                                   <id provider="uniprot">4890</id>
1728                                   <scientific_name>Ascomycota</scientific_name>
1729                                   <rank>phylum</rank>
1730                                 </taxonomy>
1731                                 <clade>
1732                                   <name>Pezizomycotina_Saccharomycetales</name>
1733                                   <clade>
1734                                     <taxonomy>
1735                                       <id provider="uniprot">147538</id>
1736                                       <scientific_name>Pezizomycotina</scientific_name>
1737                                       <synonym>Euascomycota</synonym>
1738                                       <rank>subphylum</rank>
1739                                     </taxonomy>
1740                                     <reference doi="0.3852/mycologia.98.6.1018">
1741                                       <desc>A five-gene phylogeny of Pezizomycotina</desc>
1742                                     </reference>
1743                                     <reference>
1744                                     </reference>
1745                                     <clade>
1746                                       <taxonomy>
1747                                         <id provider="uniprot">716546</id>
1748                                         <scientific_name>Leotiomyceta</scientific_name>
1749                                       </taxonomy>
1750                                       <clade>
1751                                         <name>Sordariomyceta &amp; Dothideomycetes &amp; Trichocomaceae &amp; Lecanoromycetes</name>
1752                                         <clade>
1753                                           <name>Sordariomyceta &amp; Dothideomycetes &amp; Lecanoromycetes</name>
1754                                           <clade>
1755                                             <name>Sordariomyceta &amp; Lecanoromycetes</name>
1756                                             <clade>
1757                                               <taxonomy>
1758                                                 <id provider="uniprot">715989</id>
1759                                                 <scientific_name>Sordariomyceta</scientific_name>
1760                                               </taxonomy>
1761                                               <clade>
1762                                                 <taxonomy>
1763                                                   <id provider="uniprot">147550</id>
1764                                                   <scientific_name>Sordariomycetes</scientific_name>
1765                                                   <rank>class</rank>
1766                                                 </taxonomy>
1767                                                 <clade>
1768                                                   <name>Magnaporthales &amp; Hypocreales</name>
1769                                                   <clade>
1770                                                     <taxonomy>
1771                                                       <id provider="uniprot">5125</id>
1772                                                       <scientific_name>Hypocreales</scientific_name>
1773                                                       <rank>order</rank>
1774                                                     </taxonomy>
1775                                                     <clade>
1776                                                       <name>ACRALC</name>
1777                                                       <taxonomy>
1778                                                         <id provider="uniprot">398408</id>
1779                                                         <scientific_name>Acremonium alcalophilum</scientific_name>
1780                                                         <rank>species</rank>
1781                                                         <uri>http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg</uri>
1782                                                       </taxonomy>
1783                                                     </clade>
1784                                                     <clade>
1785                                                       <name>GIBZE</name>
1786                                                       <taxonomy>
1787                                                         <id provider="uniprot">5518</id>
1788                                                         <code>GIBZE</code>
1789                                                         <scientific_name>Gibberella zeae</scientific_name>
1790                                                         <common_name>Wheat head blight fungus</common_name>
1791                                                         <synonym>Fusarium graminearum</synonym>
1792                                                         <rank>species</rank>
1793                                                       </taxonomy>
1794                                                     </clade>
1795                                                     <clade>
1796                                                       <name>TRIVE</name>
1797                                                       <taxonomy>
1798                                                         <id provider="uniprot">29875</id>
1799                                                         <code>TRIVE</code>
1800                                                         <scientific_name>Trichoderma virens</scientific_name>
1801                                                         <common_name>Gliocladium virens</common_name>
1802                                                         <synonym>Trichoderma virens</synonym>
1803                                                         <rank>species</rank>
1804                                                       </taxonomy>
1805                                                     </clade>
1806                                                   </clade>
1807                                                   <clade>
1808                                                     <name>MAGGR</name>
1809                                                     <taxonomy>
1810                                                       <id provider="uniprot">148305</id>
1811                                                       <code>MAGGR</code>
1812                                                       <scientific_name>Magnaporthe grisea</scientific_name>
1813                                                       <common_name>Rice blast fungus</common_name>
1814                                                       <synonym>Pyricularia grisea</synonym>
1815                                                       <rank>species</rank>
1816                                                     </taxonomy>
1817                                                   </clade>
1818                                                 </clade>
1819                                                 <clade>
1820                                                   <taxonomy>
1821                                                     <id provider="uniprot">5139</id>
1822                                                     <scientific_name>Sordariales</scientific_name>
1823                                                     <rank>order</rank>
1824                                                   </taxonomy>
1825                                                   <clade>
1826                                                     <taxonomy>
1827                                                       <id provider="uniprot">35718</id>
1828                                                       <scientific_name>Chaetomiaceae</scientific_name>
1829                                                       <rank>family</rank>
1830                                                     </taxonomy>
1831                                                     <clade>
1832                                                       <taxonomy>
1833                                                         <id provider="uniprot">35719</id>
1834                                                         <scientific_name>Thielavia</scientific_name>
1835                                                         <rank>genus</rank>
1836                                                       </taxonomy>
1837                                                       <clade>
1838                                                         <name>MYCTHE</name>
1839                                                         <taxonomy>
1840                                                           <id provider="uniprot">573728</id>
1841                                                           <scientific_name>Myceliophthora thermophila</scientific_name>
1842                                                           <authority>(Apinis) Oorschot 1977</authority>
1843                                                           <synonym>Sporotrichum thermophilum</synonym>
1844                                                           <synonym>anamorph of Thielavia heterothallica</synonym>
1845                                                           <rank>species</rank>
1846                                                           <uri>http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg</uri>
1847                                                         </taxonomy>
1848                                                       </clade>
1849                                                       <clade>
1850                                                         <name>THITER</name>
1851                                                         <taxonomy>
1852                                                           <id provider="eol">193532</id>
1853                                                           <scientific_name>Thielavia terrestris</scientific_name>
1854                                                           <authority>Malloch &amp; Cain 1972</authority>
1855                                                           <synonym>Acremonium alabamense</synonym>
1856                                                           <rank>species</rank>
1857                                                           <uri>http://genome.jgi-psf.org/public/Thite2/Thite1.jpg</uri>
1858                                                         </taxonomy>
1859                                                       </clade>
1860                                                     </clade>
1861                                                     <clade>
1862                                                       <name>CHAGB</name>
1863                                                       <taxonomy>
1864                                                         <id provider="eol">1029505</id>
1865                                                         <code>CHAGB</code>
1866                                                         <scientific_name>Chaetomium globosum</scientific_name>
1867                                                         <authority>Kunze 1817</authority>
1868                                                         <common_name>Soil fungus</common_name>
1869                                                         <rank>species</rank>
1870                                                       </taxonomy>
1871                                                     </clade>
1872                                                   </clade>
1873                                                   <clade>
1874                                                     <name>NEUCR</name>
1875                                                     <taxonomy>
1876                                                       <id provider="uniprot">5141</id>
1877                                                       <code>NEUCR</code>
1878                                                       <scientific_name>Neurospora crassa</scientific_name>
1879                                                       <rank>species</rank>
1880                                                     </taxonomy>
1881                                                   </clade>
1882                                                 </clade>
1883                                               </clade>
1884                                               <clade>
1885                                                 <taxonomy>
1886                                                   <id provider="uniprot">147548</id>
1887                                                   <scientific_name>Leotiomycetes</scientific_name>
1888                                                   <rank>class</rank>
1889                                                 </taxonomy>
1890                                                 <clade>
1891                                                   <taxonomy>
1892                                                     <id provider="uniprot">28983</id>
1893                                                     <scientific_name>Sclerotiniaceae</scientific_name>
1894                                                     <rank>family</rank>
1895                                                   </taxonomy>
1896                                                   <clade>
1897                                                     <taxonomy>
1898                                                       <id provider="uniprot">40559</id>
1899                                                       <code>BOTFU</code>
1900                                                       <scientific_name>Botryotinia fuckeliana</scientific_name>
1901                                                       <common_name>Noble rot fungus</common_name>
1902                                                       <synonym>Botrytis cinerea</synonym>
1903                                                       <rank>species</rank>
1904                                                     </taxonomy>
1905                                                   </clade>
1906                                                   <clade>
1907                                                     <taxonomy>
1908                                                       <id provider="uniprot">5180</id>
1909                                                       <code>SCLSC</code>
1910                                                       <scientific_name>Sclerotinia sclerotiorum</scientific_name>
1911                                                       <common_name>White mold</common_name>
1912                                                       <synonym>Whetzelinia sclerotiorum</synonym>
1913                                                       <rank>species</rank>
1914                                                     </taxonomy>
1915                                                   </clade>
1916                                                 </clade>
1917                                                 <clade>
1918                                                   <name>OIDMAI</name>
1919                                                   <taxonomy>
1920                                                     <id provider="uniprot">78148</id>
1921                                                     <scientific_name>Oidiodendron maius</scientific_name>
1922                                                     <rank>species</rank>
1923                                                   </taxonomy>
1924                                                 </clade>
1925                                               </clade>
1926                                             </clade>
1927                                             <clade>
1928                                               <taxonomy>
1929                                                 <id provider="uniprot">388435</id>
1930                                                 <scientific_name>Lecanoromycetidae</scientific_name>
1931                                                 <rank>subclass</rank>
1932                                               </taxonomy>
1933                                               <clade>
1934                                                 <name>CLAGRA</name>
1935                                                 <taxonomy>
1936                                                   <id provider="uniprot">27339</id>
1937                                                   <scientific_name>Cladonia grayi</scientific_name>
1938                                                   <synonym>Cladonia grayi Merr</synonym>
1939                                                   <rank>species</rank>
1940                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg</uri>
1941                                                 </taxonomy>
1942                                               </clade>
1943                                               <clade>
1944                                                 <name>XANPAR</name>
1945                                                 <taxonomy>
1946                                                   <id provider="uniprot">107463</id>
1947                                                   <scientific_name>Xanthoria parietina</scientific_name>
1948                                                   <rank>species</rank>
1949                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg</uri>
1950                                                 </taxonomy>
1951                                               </clade>
1952                                             </clade>
1953                                           </clade>
1954                                           <clade>
1955                                             <taxonomy>
1956                                               <id provider="uniprot">147541</id>
1957                                               <scientific_name>Dothideomycetes</scientific_name>
1958                                               <rank>class</rank>
1959                                             </taxonomy>
1960                                             <reference doi="10.3114/sim.2009.64.01">
1961                                               <desc>A class-wide phylogenetic assessment of Dothideomycetes</desc>
1962                                             </reference>
1963                                             <clade>
1964                                               <taxonomy>
1965                                                 <id provider="uniprot">134362</id>
1966                                                 <scientific_name>Capnodiales</scientific_name>
1967                                                 <rank>order</rank>
1968                                               </taxonomy>
1969                                               <clade>
1970                                                 <taxonomy>
1971                                                   <id provider="uniprot">41254</id>
1972                                                   <scientific_name>Mycosphaerella</scientific_name>
1973                                                   <rank>genus</rank>
1974                                                 </taxonomy>
1975                                                 <clade>
1976                                                   <name>MYCFI</name>
1977                                                   <taxonomy>
1978                                                     <id provider="uniprot">83344</id>
1979                                                     <scientific_name>Mycosphaerella fijiensis</scientific_name>
1980                                                     <rank>species</rank>
1981                                                   </taxonomy>
1982                                                 </clade>
1983                                                 <clade>
1984                                                   <name>MYCGR</name>
1985                                                   <taxonomy>
1986                                                     <id provider="uniprot">54734</id>
1987                                                     <code>MYCGR</code>
1988                                                     <scientific_name>Mycosphaerella graminicola</scientific_name>
1989                                                     <common_name>Speckled leaf blotch fungus</common_name>
1990                                                     <synonym>Septoria tritici</synonym>
1991                                                     <rank>species</rank>
1992                                                   </taxonomy>
1993                                                 </clade>
1994                                                 <clade>
1995                                                   <name>MYCPJ</name>
1996                                                   <taxonomy>
1997                                                     <id provider="uniprot">64363</id>
1998                                                     <code>MYCPJ</code>
1999                                                     <scientific_name>Mycosphaerella pini</scientific_name>
2000                                                     <common_name>Red band needle blight disease fungus</common_name>
2001                                                     <synonym>Dothistroma septosporum</synonym>
2002                                                     <synonym>Dothistroma pini</synonym>
2003                                                     <rank>species</rank>
2004                                                   </taxonomy>
2005                                                 </clade>
2006                                                 <clade>
2007                                                   <name>MYCPOP</name>
2008                                                   <taxonomy>
2009                                                     <id provider="uniprot">85929</id>
2010                                                     <scientific_name>Mycosphaerella populorum</scientific_name>
2011                                                     <synonym>Septoria musiva</synonym>
2012                                                     <rank>species</rank>
2013                                                   </taxonomy>
2014                                                 </clade>
2015                                               </clade>
2016                                               <clade>
2017                                                 <name>BAUCOM</name>
2018                                                 <taxonomy>
2019                                                   <id provider="uniprot">430998</id>
2020                                                   <scientific_name>Baudoinia compniacensis</scientific_name>
2021                                                   <rank>species</rank>
2022                                                   <uri>http://www.diark.org/img/species_pict/Baudoinia_compniacensis</uri>
2023                                                 </taxonomy>
2024                                               </clade>
2025                                             </clade>
2026                                             <clade>
2027                                               <taxonomy>
2028                                                 <id provider="uniprot">715340</id>
2029                                                 <scientific_name>Pleosporineae</scientific_name>
2030                                                 <rank>suborder</rank>
2031                                               </taxonomy>
2032                                               <clade>
2033                                                 <taxonomy>
2034                                                   <id provider="uniprot">28556</id>
2035                                                   <scientific_name>Pleosporaceae</scientific_name>
2036                                                   <rank>family</rank>
2037                                                 </taxonomy>
2038                                                 <clade>
2039                                                   <name>Cochliobolus &amp; Setosphaeria</name>
2040                                                   <clade>
2041                                                     <taxonomy>
2042                                                       <id provider="uniprot">5015</id>
2043                                                       <scientific_name>Cochliobolus</scientific_name>
2044                                                       <rank>genus</rank>
2045                                                     </taxonomy>
2046                                                     <clade>
2047                                                       <name>COCHE</name>
2048                                                       <taxonomy>
2049                                                         <id provider="uniprot">5016</id>
2050                                                         <code>COCHE</code>
2051                                                         <scientific_name>Cochliobolus heterostrophus</scientific_name>
2052                                                         <synonym>Drechslera maydis</synonym>
2053                                                         <rank>species</rank>
2054                                                       </taxonomy>
2055                                                     </clade>
2056                                                     <clade>
2057                                                       <taxonomy>
2058                                                         <id provider="uniprot">45130</id>
2059                                                         <code>COCSA</code>
2060                                                         <scientific_name>Cochliobolus sativus</scientific_name>
2061                                                         <synonym>Bipolaris sorokiniana</synonym>
2062                                                         <rank>species</rank>
2063                                                         <uri>http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg</uri>
2064                                                       </taxonomy>
2065                                                     </clade>
2066                                                   </clade>
2067                                                   <clade>
2068                                                     <taxonomy>
2069                                                       <id provider="uniprot">93612</id>
2070                                                       <code>SETTU</code>
2071                                                       <scientific_name>Setosphaeria turcica</scientific_name>
2072                                                       <authority>(Luttr.) K.J. Leonard &amp; Suggs, (1974)</authority>
2073                                                       <common_name>Northern corn leaf blight disease fungus</common_name>
2074                                                       <synonym>Exserohilum turcicum</synonym>
2075                                                       <synonym>Helminthosporium turcicum</synonym>
2076                                                       <rank>species</rank>
2077                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/HTU_Mais_Mik_7_k.jpg</uri>
2078                                                       <uri>http://www.pflanzenkrankheiten.ch/diseases/STU/figures_STU/Exserohilum_turcicum_001_k.jpg</uri>
2079                                                     </taxonomy>
2080                                                   </clade>
2081                                                 </clade>
2082                                                 <clade>
2083                                                   <name>PYRTR</name>
2084                                                   <taxonomy>
2085                                                     <id provider="uniprot">426418</id>
2086                                                     <code>PYRTR</code>
2087                                                     <scientific_name>Pyrenophora tritici-repentis (strain Pt-1C-BFP)</scientific_name>
2088                                                     <common_name>Wheat tan spot fungus</common_name>
2089                                                     <synonym>Drechslera tritici-repentis</synonym>
2090                                                   </taxonomy>
2091                                                 </clade>
2092                                               </clade>
2093                                               <clade>
2094                                                 <name>PHANO</name>
2095                                                 <taxonomy>
2096                                                   <id provider="uniprot">13684</id>
2097                                                   <code>PHANO</code>
2098                                                   <scientific_name>Phaeosphaeria nodorum</scientific_name>
2099                                                   <common_name>Glume blotch fungus</common_name>
2100                                                   <synonym>Septoria nodorum</synonym>
2101                                                   <rank>species</rank>
2102                                                 </taxonomy>
2103                                               </clade>
2104                                             </clade>
2105                                           </clade>
2106                                         </clade>
2107                                         <clade>
2108                                           <taxonomy>
2109                                             <id provider="uniprot">28568</id>
2110                                             <scientific_name>Trichocomaceae</scientific_name>
2111                                             <rank>family</rank>
2112                                           </taxonomy>
2113                                           <clade>
2114                                             <name>Neosartorya_Emericella</name>
2115                                             <clade>
2116                                               <name>EMENI</name>
2117                                               <taxonomy>
2118                                                 <id provider="eol">195546</id>
2119                                                 <code>EMENI</code>
2120                                                 <scientific_name>Emericella nidulans</scientific_name>
2121                                                 <authority>Vuill. 1927</authority>
2122                                                 <synonym>Aspergillus nidulans</synonym>
2123                                                 <rank>species</rank>
2124                                               </taxonomy>
2125                                             </clade>
2126                                             <clade>
2127                                               <name>NEOFI</name>
2128                                               <taxonomy>
2129                                                 <id provider="uniprot">331117</id>
2130                                                 <code>NEOFI</code>
2131                                                 <scientific_name>Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)</scientific_name>
2132                                                 <synonym>Aspergillus fischerianus</synonym>
2133                                               </taxonomy>
2134                                             </clade>
2135                                           </clade>
2136                                           <clade>
2137                                             <taxonomy>
2138                                               <id provider="uniprot">5052</id>
2139                                               <scientific_name>Aspergillus</scientific_name>
2140                                               <rank>genus</rank>
2141                                             </taxonomy>
2142                                             <clade>
2143                                               <name>ASPFL</name>
2144                                               <taxonomy>
2145                                                 <id provider="uniprot">5059</id>
2146                                                 <code>ASPFL</code>
2147                                                 <scientific_name>Aspergillus flavus</scientific_name>
2148                                                 <rank>species</rank>
2149                                               </taxonomy>
2150                                             </clade>
2151                                             <clade>
2152                                               <name>ASPNG</name>
2153                                               <taxonomy>
2154                                                 <id provider="uniprot">5061</id>
2155                                                 <code>ASPNG</code>
2156                                                 <scientific_name>Aspergillus niger</scientific_name>
2157                                                 <rank>species</rank>
2158                                               </taxonomy>
2159                                             </clade>
2160                                           </clade>
2161                                         </clade>
2162                                       </clade>
2163                                       <clade>
2164                                         <taxonomy>
2165                                           <id provider="uniprot">33183</id>
2166                                           <scientific_name>Onygenales</scientific_name>
2167                                           <rank>order</rank>
2168                                         </taxonomy>
2169                                         <clade>
2170                                           <name>COCIM</name>
2171                                           <taxonomy>
2172                                             <id provider="uniprot">5501</id>
2173                                             <code>COCIM</code>
2174                                             <scientific_name>Coccidioides immitis</scientific_name>
2175                                             <common_name>Valley fever fungus</common_name>
2176                                             <rank>species</rank>
2177                                           </taxonomy>
2178                                         </clade>
2179                                         <clade>
2180                                           <name>UNCRE</name>
2181                                           <taxonomy>
2182                                             <id provider="uniprot">336963</id>
2183                                             <code>UNCRE</code>
2184                                             <scientific_name>Uncinocarpus reesii (strain UAMH 1704)</scientific_name>
2185                                           </taxonomy>
2186                                         </clade>
2187                                       </clade>
2188                                     </clade>
2189                                     <clade>
2190                                       <taxonomy>
2191                                         <id provider="uniprot">656061</id>
2192                                         <code>TUBMM</code>
2193                                         <scientific_name>Tuber melanosporum (strain Mel28)</scientific_name>
2194                                         <common_name>Perigord black truffle</common_name>
2195                                         <synonym>Tuber melanosporum Mel28</synonym>
2196                                         <uri>http://www.gmvmonza.org/images%20parco/Tuber%20melanosporum%20p106.jpg</uri>
2197                                       </taxonomy>
2198                                     </clade>
2199                                   </clade>
2200                                   <clade>
2201                                     <taxonomy>
2202                                       <id provider="uniprot">4892</id>
2203                                       <scientific_name>Saccharomycetales</scientific_name>
2204                                       <common_name>budding yeasts</common_name>
2205                                       <rank>order</rank>
2206                                     </taxonomy>
2207                                     <clade>
2208                                       <name>Candida &amp; Debaryomyces &amp; Saccharomycetacea</name>
2209                                       <clade>
2210                                         <taxonomy>
2211                                           <id provider="uniprot">4893</id>
2212                                           <scientific_name>Saccharomycetaceae</scientific_name>
2213                                           <rank>family</rank>
2214                                         </taxonomy>
2215                                         <clade>
2216                                           <name>Saccharomyces_Pichia</name>
2217                                           <clade>
2218                                             <name>Saccharomyces</name>
2219                                             <clade>
2220                                               <name>SACCA</name>
2221                                               <taxonomy>
2222                                                 <id provider="uniprot">27288</id>
2223                                                 <code>SACCA</code>
2224                                                 <scientific_name>Saccharomyces castellii</scientific_name>
2225                                                 <common_name>Yeast</common_name>
2226                                                 <synonym>Saccharomyces castellii</synonym>
2227                                                 <rank>species</rank>
2228                                               </taxonomy>
2229                                             </clade>
2230                                             <clade>
2231                                               <name>YEAST</name>
2232                                               <taxonomy>
2233                                                 <id provider="uniprot">4932</id>
2234                                                 <code>YEAST</code>
2235                                                 <scientific_name>Saccharomyces cerevisiae</scientific_name>
2236                                                 <common_name>Baker&apos;s yeast</common_name>
2237                                                 <rank>species</rank>
2238                                               </taxonomy>
2239                                             </clade>
2240                                           </clade>
2241                                           <clade>
2242                                             <name>PICAN</name>
2243                                             <taxonomy>
2244                                               <id provider="uniprot">4905</id>
2245                                               <code>PICAN</code>
2246                                               <scientific_name>Pichia angusta</scientific_name>
2247                                               <common_name>Yeast</common_name>
2248                                               <synonym>Hansenula polymorpha</synonym>
2249                                               <rank>species</rank>
2250                                             </taxonomy>
2251                                           </clade>
2252                                         </clade>
2253                                         <clade>
2254                                           <name>Kluyveromyces &amp; Ashbya</name>
2255                                           <clade>
2256                                             <name>Kluyveromyces</name>
2257                                             <clade>
2258                                               <name>KLULA</name>
2259                                               <taxonomy>
2260                                                 <id provider="uniprot">28985</id>
2261                                                 <code>KLULA</code>
2262                                                 <scientific_name>Kluyveromyces lactis</scientific_name>
2263                                                 <common_name>Yeast</common_name>
2264                                                 <synonym>Candida sphaerica</synonym>
2265                                                 <rank>species</rank>
2266                                               </taxonomy>
2267                                             </clade>
2268                                             <clade>
2269                                               <name>KLUWA</name>
2270                                               <taxonomy>
2271                                                 <id provider="uniprot">4914</id>
2272                                                 <code>KLUWA</code>
2273                                                 <scientific_name>Kluyveromyces waltii</scientific_name>
2274                                                 <common_name>Yeast</common_name>
2275                                                 <rank>species</rank>
2276                                               </taxonomy>
2277                                             </clade>
2278                                           </clade>
2279                                           <clade>
2280                                             <name>ASHGO</name>
2281                                             <taxonomy>
2282                                               <id provider="uniprot">33169</id>
2283                                               <code>ASHGO</code>
2284                                               <scientific_name>Ashbya gossypii</scientific_name>
2285                                               <common_name>Yeast</common_name>
2286                                               <synonym>Eremothecium gossypii</synonym>
2287                                               <rank>species</rank>
2288                                             </taxonomy>
2289                                           </clade>
2290                                         </clade>
2291                                       </clade>
2292                                       <clade>
2293                                         <name>Candida &amp; Debaryomyces</name>
2294                                         <clade>
2295                                           <taxonomy>
2296                                             <id provider="uniprot">5475</id>
2297                                             <scientific_name>Candida</scientific_name>
2298                                             <rank>genus</rank>
2299                                           </taxonomy>
2300                                           <clade>
2301                                             <name>CANAL</name>
2302                                             <taxonomy>
2303                                               <id provider="uniprot">5476</id>
2304                                               <code>CANAL</code>
2305                                               <scientific_name>Candida albicans</scientific_name>
2306                                               <common_name>Yeast</common_name>
2307                                               <rank>species</rank>
2308                                             </taxonomy>
2309                                           </clade>
2310                                           <clade>
2311                                             <name>CANTR</name>
2312                                             <taxonomy>
2313                                               <id provider="uniprot">5482</id>
2314                                               <code>CANTR</code>
2315                                               <scientific_name>Candida tropicalis</scientific_name>
2316                                               <common_name>Yeast</common_name>
2317                                               <rank>species</rank>
2318                                             </taxonomy>
2319                                           </clade>
2320                                         </clade>
2321                                         <clade>
2322                                           <name>DEBHA</name>
2323                                           <taxonomy>
2324                                             <id provider="uniprot">4959</id>
2325                                             <code>DEBHA</code>
2326                                             <scientific_name>Debaryomyces hansenii</scientific_name>
2327                                             <common_name>Yeast</common_name>
2328                                             <synonym>Torulaspora hansenii</synonym>
2329                                             <rank>species</rank>
2330                                           </taxonomy>
2331                                         </clade>
2332                                       </clade>
2333                                     </clade>
2334                                     <clade>
2335                                       <name>YARLI</name>
2336                                       <taxonomy>
2337                                         <id provider="uniprot">4952</id>
2338                                         <code>YARLI</code>
2339                                         <scientific_name>Yarrowia lipolytica</scientific_name>
2340                                         <synonym>Candida lipolytica</synonym>
2341                                         <rank>species</rank>
2342                                       </taxonomy>
2343                                     </clade>
2344                                   </clade>
2345                                 </clade>
2346                                 <clade>
2347                                   <taxonomy>
2348                                     <id provider="uniprot">451866</id>
2349                                     <scientific_name>Taphrinomycotina</scientific_name>
2350                                     <rank>subphylum</rank>
2351                                   </taxonomy>
2352                                   <clade>
2353                                     <name>Pneumocystidomycetes &amp; Schizosaccharomycetes</name>
2354                                     <clade>
2355                                       <taxonomy>
2356                                         <id provider="uniprot">4895</id>
2357                                         <scientific_name>Schizosaccharomyces</scientific_name>
2358                                         <rank>genus</rank>
2359                                       </taxonomy>
2360                                       <clade>
2361                                         <name>SCHJP</name>
2362                                         <taxonomy>
2363                                           <id provider="uniprot">4897</id>
2364                                           <code>SCHJP</code>
2365                                           <scientific_name>Schizosaccharomyces japonicus</scientific_name>
2366                                           <common_name>Fission yeast</common_name>
2367                                           <rank>species</rank>
2368                                         </taxonomy>
2369                                       </clade>
2370                                       <clade>
2371                                         <taxonomy>
2372                                           <id provider="uniprot">4899</id>
2373                                           <code>SCHOT</code>
2374                                           <scientific_name>Schizosaccharomyces octosporus</scientific_name>
2375                                           <common_name>Fission yeast</common_name>
2376                                           <rank>species</rank>
2377                                           <uri>http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG</uri>
2378                                         </taxonomy>
2379                                       </clade>
2380                                       <clade>
2381                                         <name>SCHPO</name>
2382                                         <taxonomy>
2383                                           <id provider="uniprot">4896</id>
2384                                           <code>SCHPO</code>
2385                                           <scientific_name>Schizosaccharomyces pombe</scientific_name>
2386                                           <common_name>Fission yeast</common_name>
2387                                           <rank>species</rank>
2388                                         </taxonomy>
2389                                       </clade>
2390                                     </clade>
2391                                     <clade>
2392                                       <name>PNECA</name>
2393                                       <taxonomy>
2394                                         <id provider="uniprot">4754</id>
2395                                         <code>PNECA</code>
2396                                         <scientific_name>Pneumocystis carinii</scientific_name>
2397                                         <rank>species</rank>
2398                                       </taxonomy>
2399                                     </clade>
2400                                   </clade>
2401                                   <clade>
2402                                     <name>SAICOM</name>
2403                                     <taxonomy>
2404                                       <id provider="uniprot">5606</id>
2405                                       <scientific_name>Saitoella complicata</scientific_name>
2406                                       <rank>species</rank>
2407                                     </taxonomy>
2408                                   </clade>
2409                                 </clade>
2410                               </clade>
2411                               <clade>
2412                                 <taxonomy>
2413                                   <id provider="uniprot">5204</id>
2414                                   <scientific_name>Basidiomycota</scientific_name>
2415                                   <rank>phylum</rank>
2416                                 </taxonomy>
2417                                 <clade>
2418                                   <name>Agaricomycotina &amp; Ustilaginomycotina &amp; Pucciniomycotina</name>
2419                                   <clade>
2420                                     <name>Agaricomycotina &amp; Ustilaginomycotina</name>
2421                                     <clade>
2422                                       <taxonomy>
2423                                         <id provider="uniprot">5302</id>
2424                                         <scientific_name>Agaricomycotina</scientific_name>
2425                                       </taxonomy>
2426                                       <clade>
2427                                         <taxonomy>
2428                                           <id provider="uniprot">155619</id>
2429                                           <scientific_name>Homobasidiomycetes</scientific_name>
2430                                           <rank>class</rank>
2431                                         </taxonomy>
2432                                         <reference doi="10.1098/rspb.2002.2123">
2433                                           <desc>Evolution of complex fruiting–body morphologies in homobasidiomycetes</desc>
2434                                         </reference>
2435                                         <clade>
2436                                           <name>Agaricomycetidae &amp; Gloeophyllum &amp; Aphyllophorales</name>
2437                                           <clade>
2438                                             <name>Agaricomycetidae &amp; Gloeophyllum</name>
2439                                             <clade>
2440                                               <taxonomy>
2441                                                 <id provider="uniprot">452333</id>
2442                                                 <scientific_name>Agaricomycetidae</scientific_name>
2443                                                 <rank>subclass</rank>
2444                                               </taxonomy>
2445                                               <clade>
2446                                                 <name>Agaricales &amp; Boletales</name>
2447                                                 <clade>
2448                                                   <taxonomy>
2449                                                     <id provider="uniprot">5338</id>
2450                                                     <scientific_name>Agaricales</scientific_name>
2451                                                     <rank>order</rank>
2452                                                   </taxonomy>
2453                                                   <clade>
2454                                                     <name>Agaricus &amp; Coprinopsis &amp; Laccaria &amp; Pleurotus</name>
2455                                                     <clade>
2456                                                       <name>Agaricus &amp; Coprinopsis &amp; Laccaria</name>
2457                                                       <clade>
2458                                                         <name>Agaricus &amp; Coprinopsis</name>
2459                                                         <clade>
2460                                                           <name>AGABB</name>
2461                                                           <taxonomy>
2462                                                             <id provider="uniprot">192524</id>
2463                                                             <scientific_name>Agaricus bisporus var. burnettii</scientific_name>
2464                                                             <uri>http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg</uri>
2465                                                           </taxonomy>
2466                                                         </clade>
2467                                                         <clade>
2468                                                           <name>COPCI</name>
2469                                                           <taxonomy>
2470                                                             <id provider="uniprot">5346</id>
2471                                                             <code>COPCI</code>
2472                                                             <scientific_name>Coprinopsis cinerea</scientific_name>
2473                                                             <common_name>Inky cap fungus</common_name>
2474                                                             <synonym>Hormographiella aspergillata</synonym>
2475                                                             <rank>species</rank>
2476                                                             <uri>http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg</uri>
2477                                                           </taxonomy>
2478                                                         </clade>
2479                                                       </clade>
2480                                                       <clade>
2481                                                         <taxonomy>
2482                                                           <id provider="uniprot">29883</id>
2483                                                           <code>LACBI</code>
2484                                                           <scientific_name>Laccaria bicolor</scientific_name>
2485                                                           <common_name>Bicoloured deceiver</common_name>
2486                                                           <synonym>Laccaria laccata var. bicolor</synonym>
2487                                                           <rank>species</rank>
2488                                                           <uri>https://www.llnl.gov/news/newsreleases/2006/images/Laccaria_big.jpg</uri>
2489                                                         </taxonomy>
2490                                                       </clade>
2491                                                     </clade>
2492                                                     <clade>
2493                                                       <name>GYMLUX</name>
2494                                                       <taxonomy>
2495                                                         <id provider="uniprot">206324</id>
2496                                                         <scientific_name>Gymnopus luxurians</scientific_name>
2497                                                         <rank>species</rank>
2498                                                         <uri>http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg</uri>
2499                                                       </taxonomy>
2500                                                     </clade>
2501                                                   </clade>
2502                                                   <clade>
2503                                                     <name>PLEOS</name>
2504                                                     <taxonomy>
2505                                                       <id provider="uniprot">5322</id>
2506                                                       <code>PLEOS</code>
2507                                                       <scientific_name>Pleurotus ostreatus</scientific_name>
2508                                                       <common_name>Oyster mushroom</common_name>
2509                                                       <synonym>White-rot fungus</synonym>
2510                                                       <rank>species</rank>
2511                                                       <uri>http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg</uri>
2512                                                     </taxonomy>
2513                                                   </clade>
2514                                                 </clade>
2515                                                 <clade>
2516                                                   <taxonomy>
2517                                                     <id provider="uniprot">68889</id>
2518                                                     <scientific_name>Boletales</scientific_name>
2519                                                     <synonym>Melanogastrales</synonym>
2520                                                     <synonym>Sclerodermatales</synonym>
2521                                                     <rank>order</rank>
2522                                                   </taxonomy>
2523                                                   <clade>
2524                                                     <taxonomy>
2525                                                       <id provider="uniprot">227334</id>
2526                                                       <scientific_name>Coniophorineae</scientific_name>
2527                                                       <rank>suborder</rank>
2528                                                     </taxonomy>
2529                                                     <clade>
2530                                                       <name>CONPUT</name>
2531                                                       <taxonomy>
2532                                                         <id provider="uniprot">80637</id>
2533                                                         <scientific_name>Coniophora puteana</scientific_name>
2534                                                         <authority>Schum. ex Fries</authority>
2535                                                         <common_name>cellar fungus</common_name>
2536                                                         <rank>species</rank>
2537                                                         <uri>http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg</uri>
2538                                                       </taxonomy>
2539                                                     </clade>
2540                                                     <clade>
2541                                                       <name>SERLAC</name>
2542                                                       <taxonomy>
2543                                                         <id provider="uniprot">85982</id>
2544                                                         <scientific_name>Serpula lacrymans</scientific_name>
2545                                                         <common_name>dry rot fungus</common_name>
2546                                                         <rank>species</rank>
2547                                                         <uri>http://www.biolib.cz/IMG/GAL/BIG/18135.jpg</uri>
2548                                                       </taxonomy>
2549                                                     </clade>
2550                                                   </clade>
2551                                                   <clade>
2552                                                     <name>HYDPIN</name>
2553                                                     <taxonomy>
2554                                                       <id provider="uniprot">388859</id>
2555                                                       <scientific_name>Hydnomerulius pinastri</scientific_name>
2556                                                       <common_name>Spiny dry rot fungus</common_name>
2557                                                       <rank>species</rank>
2558                                                       <uri>http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg</uri>
2559                                                     </taxonomy>
2560                                                   </clade>
2561                                                 </clade>
2562                                               </clade>
2563                                               <clade>
2564                                                 <name>JAAARG</name>
2565                                                 <taxonomy>
2566                                                   <id provider="uniprot">202697</id>
2567                                                   <scientific_name>Jaapia argillacea</scientific_name>
2568                                                   <rank>species</rank>
2569                                                   <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Jaapia-argillacea.jpeg/640px-Jaapia-argillacea.jpeg</uri>
2570                                                 </taxonomy>
2571                                               </clade>
2572                                             </clade>
2573                                             <clade>
2574                                               <name>GLOTR</name>
2575                                               <taxonomy>
2576                                                 <id provider="uniprot">104355</id>
2577                                                 <code>GLOTR</code>
2578                                                 <scientific_name>Gloeophyllum trabeum</scientific_name>
2579                                                 <common_name>Brown rot fungus</common_name>
2580                                                 <rank>species</rank>
2581                                                 <uri>http://www.cbs.knaw.nl/images/Images_CBSFungi/CD/0001/0008/Gloeophyllum_trabeum.jpg</uri>
2582                                               </taxonomy>
2583                                             </clade>
2584                                           </clade>
2585                                           <clade>
2586                                             <taxonomy>
2587                                               <id provider="uniprot">5303</id>
2588                                               <scientific_name>Aphyllophorales</scientific_name>
2589                                               <authority>Gäum. (1926)</authority>
2590                                               <common_name>Shelf Fungi</common_name>
2591                                               <synonym>Polyporales</synonym>
2592                                               <rank>order</rank>
2593                                             </taxonomy>
2594                                             <clade>
2595                                               <taxonomy>
2596                                                 <id provider="uniprot">83233</id>
2597                                                 <scientific_name>Coriolaceae</scientific_name>
2598                                                 <rank>family</rank>
2599                                               </taxonomy>
2600                                               <reference doi="10.1017/S1477200005001623">
2601                                                 <desc>The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes)</desc>
2602                                               </reference>
2603                                               <reference>
2604                                               </reference>
2605                                               <reference>
2606                                               </reference>
2607                                               <clade>
2608                                                 <name>Postia &amp; Fomitopsis &amp; Wolfiporia &amp; Trametes</name>
2609                                                 <clade>
2610                                                   <name>Antrodia clade</name>
2611                                                   <taxonomy>
2612                                                     <common_name>Antrodia clade</common_name>
2613                                                   </taxonomy>
2614                                                   <clade>
2615                                                     <name>FOMPIN</name>
2616                                                     <taxonomy>
2617                                                       <id provider="uniprot">40483</id>
2618                                                       <scientific_name>Fomitopsis pinicola</scientific_name>
2619                                                       <authority>P. Karst. 1881</authority>
2620                                                       <common_name>Red banded polypore</common_name>
2621                                                       <synonym>Fomes pinicola</synonym>
2622                                                       <rank>species</rank>
2623                                                       <uri>http://content6.eol.org/content/2009/06/07/01/48471_large.jpg</uri>
2624                                                     </taxonomy>
2625                                                   </clade>
2626                                                   <clade>
2627                                                     <name>POSPL</name>
2628                                                     <taxonomy>
2629                                                       <id provider="uniprot">104341</id>
2630                                                       <scientific_name>Postia placenta</scientific_name>
2631                                                       <rank>species</rank>
2632                                                       <uri>http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg</uri>
2633                                                     </taxonomy>
2634                                                   </clade>
2635                                                 </clade>
2636                                                 <clade>
2637                                                   <name>core polyporoid clade</name>
2638                                                   <taxonomy>
2639                                                     <common_name>core polyporoid clade</common_name>
2640                                                   </taxonomy>
2641                                                   <clade>
2642                                                     <name>TRAVE</name>
2643                                                     <taxonomy>
2644                                                       <id provider="uniprot">5325</id>
2645                                                       <code>TRAVE</code>
2646                                                       <scientific_name>Trametes versicolor</scientific_name>
2647                                                       <authority>(L.) Lloyd 1921</authority>
2648                                                       <common_name>White-rot fungus</common_name>
2649                                                       <synonym>Coriolus versicolor</synonym>
2650                                                       <synonym>Bjerkandera versicolor</synonym>
2651                                                       <rank>species</rank>
2652                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg</uri>
2653                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg</uri>
2654                                                       <uri>http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg</uri>
2655                                                       <uri>http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG</uri>
2656                                                     </taxonomy>
2657                                                   </clade>
2658                                                   <clade>
2659                                                     <name>WOLCOC</name>
2660                                                     <taxonomy>
2661                                                       <id provider="uniprot">81056</id>
2662                                                       <scientific_name>Wolfiporia cocos</scientific_name>
2663                                                       <rank>species</rank>
2664                                                       <uri>http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg</uri>
2665                                                     </taxonomy>
2666                                                   </clade>
2667                                                 </clade>
2668                                               </clade>
2669                                               <clade>
2670                                                 <name>CERSU</name>
2671                                                 <taxonomy>
2672                                                   <id provider="uniprot">42742</id>
2673                                                   <code>CERSU</code>
2674                                                   <scientific_name>Ceriporiopsis subvermispora</scientific_name>
2675                                                   <rank>species</rank>
2676                                                 </taxonomy>
2677                                               </clade>
2678                                             </clade>
2679                                             <clade>
2680                                               <name>DICSQU</name>
2681                                               <taxonomy>
2682                                                 <id provider="uniprot">114155</id>
2683                                                 <scientific_name>Dichomitus squalens</scientific_name>
2684                                                 <authority>(P. Karst.) D. A. Reid 1965</authority>
2685                                                 <common_name>Red rot</common_name>
2686                                                 <synonym>Polyporus anceps</synonym>
2687                                                 <rank>species</rank>
2688                                                 <uri>http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg</uri>
2689                                               </taxonomy>
2690                                             </clade>
2691                                           </clade>
2692                                         </clade>
2693                                         <clade>
2694                                           <name>HETAN</name>
2695                                           <taxonomy>
2696                                             <id provider="uniprot">13563</id>
2697                                             <code>HETAN</code>
2698                                             <scientific_name>Heterobasidion annosum</scientific_name>
2699                                             <common_name>Root rot fungus</common_name>
2700                                             <rank>species</rank>
2701                                           </taxonomy>
2702                                         </clade>
2703                                       </clade>
2704                                       <clade>
2705                                         <taxonomy>
2706                                           <id provider="uniprot">5215</id>
2707                                           <scientific_name>Tremellaceae</scientific_name>
2708                                           <rank>family</rank>
2709                                         </taxonomy>
2710                                         <clade>
2711                                           <name>CRYNE</name>
2712                                           <taxonomy>
2713                                             <id provider="uniprot">5207</id>
2714                                             <code>CRYNE</code>
2715                                             <scientific_name>Cryptococcus neoformans</scientific_name>
2716                                             <synonym>Filobasidiella neoformans</synonym>
2717                                             <rank>species</rank>
2718                                           </taxonomy>
2719                                         </clade>
2720                                         <clade>
2721                                           <name>TREME</name>
2722                                           <taxonomy>
2723                                             <id provider="eol">1029985</id>
2724                                             <code>TREME</code>
2725                                             <scientific_name>Tremella mesenterica</scientific_name>
2726                                             <authority>Pers. 1800</authority>
2727                                             <common_name>Jelly fungus</common_name>
2728                                             <synonym>Yellow Brain</synonym>
2729                                             <synonym>Tremella lutescens</synonym>
2730                                             <rank>species</rank>
2731                                           </taxonomy>
2732                                         </clade>
2733                                       </clade>
2734                                     </clade>
2735                                     <clade>
2736                                       <taxonomy>
2737                                         <id provider="uniprot">452284</id>
2738                                         <scientific_name>Ustilaginomycotina</scientific_name>
2739                                         <rank>subphylum</rank>
2740                                       </taxonomy>
2741                                       <clade>
2742                                         <taxonomy>
2743                                           <id provider="uniprot">425265</id>
2744                                           <code>MALGO</code>
2745                                           <scientific_name>Malassezia globosa (strain ATCC MYA-4612 / CBS 7966)</scientific_name>
2746                                           <common_name>Dandruff-associated fungus</common_name>
2747                                         </taxonomy>
2748                                       </clade>
2749                                       <clade>
2750                                         <name>USTMA</name>
2751                                         <taxonomy>
2752                                           <id provider="uniprot">5270</id>
2753                                           <code>USTMA</code>
2754                                           <scientific_name>Ustilago maydis</scientific_name>
2755                                           <common_name>Smut fungus</common_name>
2756                                           <rank>species</rank>
2757                                         </taxonomy>
2758                                       </clade>
2759                                     </clade>
2760                                   </clade>
2761                                   <clade>
2762                                     <taxonomy>
2763                                       <id provider="uniprot">29000</id>
2764                                       <scientific_name>Pucciniomycotina</scientific_name>
2765                                       <rank>subphylum</rank>
2766                                     </taxonomy>
2767                                     <clade>
2768                                       <taxonomy>
2769                                         <id provider="uniprot">5258</id>
2770                                         <scientific_name>Pucciniales</scientific_name>
2771                                         <common_name>rusts</common_name>
2772                                         <rank>order</rank>
2773                                       </taxonomy>
2774                                       <clade>
2775                                         <name>MELLP</name>
2776                                         <taxonomy>
2777                                           <id provider="eol">156696</id>
2778                                           <code>MELLP</code>
2779                                           <scientific_name>Melampsora laricis-populina</scientific_name>
2780                                           <authority>Kleb. 1902</authority>
2781                                           <synonym>Melampsora larici-populina</synonym>
2782                                           <synonym>Melampsora laricipopulina</synonym>
2783                                           <rank>species</rank>
2784                                         </taxonomy>
2785                                       </clade>
2786                                       <clade>
2787                                         <name>PUCGR</name>
2788                                         <taxonomy>
2789                                           <id provider="eol">1029947</id>
2790                                           <code>PUCGR</code>
2791                                           <scientific_name>Puccinia graminis</scientific_name>
2792                                           <authority>Pers. 1794</authority>
2793                                           <common_name>Black stem rust fungus</common_name>
2794                                           <synonym>Wheat rust</synonym>
2795                                           <rank>species</rank>
2796                                         </taxonomy>
2797                                       </clade>
2798                                     </clade>
2799                                     <clade>
2800                                       <taxonomy>
2801                                         <id provider="uniprot">89013</id>
2802                                         <scientific_name>mitosporic Sporidiobolales</scientific_name>
2803                                       </taxonomy>
2804                                       <clade>
2805                                         <name>RHOGR</name>
2806                                         <taxonomy>
2807                                           <id provider="uniprot">29898</id>
2808                                           <code>RHOGR</code>
2809                                           <scientific_name>Rhodotorula graminis</scientific_name>
2810                                           <common_name>Yeast</common_name>
2811                                           <rank>species</rank>
2812                                         </taxonomy>
2813                                       </clade>
2814                                       <clade>
2815                                         <name>SPORO</name>
2816                                         <taxonomy>
2817                                           <id provider="eol">1013696</id>
2818                                           <scientific_name>Sporobolomyces roseus</scientific_name>
2819                                           <authority>Kluyver &amp; C. B. Niel 1924</authority>
2820                                           <rank>species</rank>
2821                                         </taxonomy>
2822                                       </clade>
2823                                     </clade>
2824                                   </clade>
2825                                 </clade>
2826                                 <clade>
2827                                   <name>WALSE</name>
2828                                   <taxonomy>
2829                                     <id provider="uniprot">148960</id>
2830                                     <code>WALSE</code>
2831                                     <scientific_name>Wallemia sebi</scientific_name>
2832                                     <rank>species</rank>
2833                                   </taxonomy>
2834                                 </clade>
2835                               </clade>
2836                             </clade>
2837                             <clade>
2838                               <taxonomy>
2839                                 <id provider="uniprot">451507</id>
2840                                 <scientific_name>Mucoromycotina</scientific_name>
2841                                 <rank>subphylum</rank>
2842                               </taxonomy>
2843                               <clade>
2844                                 <taxonomy>
2845                                   <id provider="uniprot">34489</id>
2846                                   <scientific_name>Mucoraceae</scientific_name>
2847                                   <rank>family</rank>
2848                                 </taxonomy>
2849                                 <clade>
2850                                   <name>MUCCI</name>
2851                                   <taxonomy>
2852                                     <id provider="uniprot">36080</id>
2853                                     <code>MUCCI</code>
2854                                     <scientific_name>Mucor circinelloides</scientific_name>
2855                                     <synonym>Mucor griseo-roseus</synonym>
2856                                     <rank>species</rank>
2857                                   </taxonomy>
2858                                 </clade>
2859                                 <clade>
2860                                   <name>PHYBL</name>
2861                                   <taxonomy>
2862                                     <id provider="uniprot">4837</id>
2863                                     <code>PHYBL</code>
2864                                     <scientific_name>Phycomyces blakesleeanus</scientific_name>
2865                                     <rank>species</rank>
2866                                   </taxonomy>
2867                                 </clade>
2868                                 <clade>
2869                                   <name>RHIOR</name>
2870                                   <taxonomy>
2871                                     <id provider="uniprot">64495</id>
2872                                     <code>RHIOR</code>
2873                                     <scientific_name>Rhizopus oryzae</scientific_name>
2874                                     <synonym>Rhizopus delemar</synonym>
2875                                     <rank>species</rank>
2876                                   </taxonomy>
2877                                 </clade>
2878                               </clade>
2879                               <clade>
2880                                 <name>MORVER</name>
2881                                 <taxonomy>
2882                                   <id provider="uniprot">78898</id>
2883                                   <scientific_name>Mortierella verticillata</scientific_name>
2884                                   <rank>species</rank>
2885                                   <uri>http://www.diark.org/img/species_pict/Mortierella_verticillata</uri>
2886                                 </taxonomy>
2887                               </clade>
2888                             </clade>
2889                           </clade>
2890                           <clade>
2891                             <name>COEREV</name>
2892                             <taxonomy>
2893                               <id provider="uniprot">61392</id>
2894                               <scientific_name>Coemansia reversa</scientific_name>
2895                               <rank>species</rank>
2896                             </taxonomy>
2897                           </clade>
2898                         </clade>
2899                         <clade>
2900                           <taxonomy>
2901                             <id provider="uniprot">28583</id>
2902                             <code>ALLMA</code>
2903                             <scientific_name>Allomyces macrogynus</scientific_name>
2904                             <rank>species</rank>
2905                           </taxonomy>
2906                         </clade>
2907                       </clade>
2908                       <clade>
2909                         <taxonomy>
2910                           <id provider="uniprot">4761</id>
2911                           <scientific_name>Chytridiomycota</scientific_name>
2912                           <common_name>chytrids</common_name>
2913                           <synonym>Mastigomycotina</synonym>
2914                           <rank>phylum</rank>
2915                         </taxonomy>
2916                         <clade>
2917                           <taxonomy>
2918                             <id provider="uniprot">451435</id>
2919                             <scientific_name>Chytridiomycetes</scientific_name>
2920                             <rank>class</rank>
2921                           </taxonomy>
2922                           <clade>
2923                             <taxonomy>
2924                               <id provider="uniprot">109871</id>
2925                               <code>BATDE</code>
2926                               <scientific_name>Batrachochytrium dendrobatidis</scientific_name>
2927                               <common_name>Frog chytrid fungus</common_name>
2928                               <rank>species</rank>
2929                             </taxonomy>
2930                           </clade>
2931                           <clade>
2932                             <taxonomy>
2933                               <id provider="uniprot">109760</id>
2934                               <code>SPIPN</code>
2935                               <scientific_name>Spizellomyces punctatus</scientific_name>
2936                               <rank>species</rank>
2937                             </taxonomy>
2938                           </clade>
2939                         </clade>
2940                         <clade>
2941                           <name>GONPRO</name>
2942                           <taxonomy>
2943                             <id provider="eol">157984</id>
2944                             <scientific_name>Gonapodya prolifera</scientific_name>
2945                             <authority>A. Fisch. 1892</authority>
2946                             <rank>species</rank>
2947                             <uri>http://genome.jgi-psf.org/public/Ganpr1/Picture5.jpg</uri>
2948                           </taxonomy>
2949                         </clade>
2950                       </clade>
2951                     </clade>
2952                     <clade>
2953                       <name>PIRSPE</name>
2954                       <taxonomy>
2955                         <id provider="uniprot">73868</id>
2956                         <scientific_name>Piromyces sp. E2</scientific_name>
2957                         <rank>species</rank>
2958                         <uri>http://www.bsu.edu/classes/ruch/msa/barr/4-17.jpg</uri>
2959                       </taxonomy>
2960                     </clade>
2961                   </clade>
2962                   <clade>
2963                     <name>ENCCU</name>
2964                     <taxonomy>
2965                       <id provider="uniprot">6035</id>
2966                       <code>ENCCU</code>
2967                       <scientific_name>Encephalitozoon cuniculi</scientific_name>
2968                       <common_name>Microsporidian parasite</common_name>
2969                       <rank>species</rank>
2970                     </taxonomy>
2971                   </clade>
2972                 </clade>
2973                 <clade>
2974                   <name>Fonticula &amp; Nucleariidae</name>
2975                   <reference doi="10.1093/molbev/msp185">
2976                   </reference>
2977                   <clade>
2978                     <name>FONALB</name>
2979                     <taxonomy>
2980                       <id provider="uniprot">691883</id>
2981                       <scientific_name>Fonticula alba</scientific_name>
2982                       <synonym>Fonticula alba Worley, Raper &amp; Hohl. 1979</synonym>
2983                       <rank>species</rank>
2984                     </taxonomy>
2985                   </clade>
2986                   <clade>
2987                     <name>NUCSIM</name>
2988                     <taxonomy>
2989                       <id provider="uniprot">154970</id>
2990                       <scientific_name>Nuclearia simplex</scientific_name>
2991                       <rank>species</rank>
2992                     </taxonomy>
2993                   </clade>
2994                 </clade>
2995               </clade>
2996             </clade>
2997             <clade>
2998               <name>THETRA</name>
2999               <taxonomy>
3000                 <id provider="uniprot">529818</id>
3001                 <scientific_name>Thecamonas trahens</scientific_name>
3002                 <rank>species</rank>
3003               </taxonomy>
3004             </clade>
3005           </clade>
3006           <clade>
3007             <name>Amoebozoa</name>
3008             <taxonomy>
3009               <id provider="uniprot">554915</id>
3010               <scientific_name>Amoebozoa</scientific_name>
3011             </taxonomy>
3012             <clade>
3013               <name>Dictyostelium</name>
3014               <taxonomy>
3015                 <id provider="uniprot">5782</id>
3016                 <scientific_name>Dictyostelium</scientific_name>
3017                 <rank>genus</rank>
3018               </taxonomy>
3019               <clade>
3020                 <name>DICDI</name>
3021                 <taxonomy>
3022                   <id provider="uniprot">44689</id>
3023                   <code>DICDI</code>
3024                   <scientific_name>Dictyostelium discoideum</scientific_name>
3025                   <common_name>Slime mold</common_name>
3026                   <rank>species</rank>
3027                 </taxonomy>
3028               </clade>
3029               <clade>
3030                 <name>DICPU</name>
3031                 <taxonomy>
3032                   <id provider="uniprot">5786</id>
3033                   <code>DICPU</code>
3034                   <scientific_name>Dictyostelium purpureum</scientific_name>
3035                   <common_name>Slime mold</common_name>
3036                   <rank>species</rank>
3037                 </taxonomy>
3038               </clade>
3039             </clade>
3040             <clade>
3041               <name>ENTHI</name>
3042               <taxonomy>
3043                 <id provider="uniprot">5759</id>
3044                 <code>ENTHI</code>
3045                 <scientific_name>Entamoeba histolytica</scientific_name>
3046                 <rank>species</rank>
3047               </taxonomy>
3048             </clade>
3049           </clade>
3050         </clade>
3051         <clade>
3052           <name>Bikonta</name>
3053           <reference doi="10.1099/ijs.0.63216-0">
3054           </reference>
3055           <clade>
3056             <name>Corticata</name>
3057             <clade>
3058               <name>Archaeplastida</name>
3059               <clade>
3060                 <taxonomy>
3061                   <id provider="uniprot">33090</id>
3062                   <scientific_name>Viridiplantae</scientific_name>
3063                   <common_name>green plants</common_name>
3064                   <rank>kingdom</rank>
3065                 </taxonomy>
3066                 <clade>
3067                   <taxonomy>
3068                     <id provider="uniprot">3193</id>
3069                     <scientific_name>Embryophyta</scientific_name>
3070                   </taxonomy>
3071                   <clade>
3072                     <taxonomy>
3073                       <id provider="uniprot">58023</id>
3074                       <scientific_name>Tracheophyta</scientific_name>
3075                     </taxonomy>
3076                     <clade>
3077                       <taxonomy>
3078                         <id provider="uniprot">3398</id>
3079                         <scientific_name>Magnoliophyta</scientific_name>
3080                         <common_name>flowering plants</common_name>
3081                         <synonym>Angiospermae</synonym>
3082                       </taxonomy>
3083                       <clade>
3084                         <taxonomy>
3085                           <id provider="uniprot">71240</id>
3086                           <scientific_name>eudicotyledons</scientific_name>
3087                         </taxonomy>
3088                         <clade>
3089                           <taxonomy>
3090                             <id provider="uniprot">91827</id>
3091                             <scientific_name>core eudicotyledons</scientific_name>
3092                           </taxonomy>
3093                           <clade>
3094                             <taxonomy>
3095                               <id provider="uniprot">71275</id>
3096                               <scientific_name>rosids</scientific_name>
3097                               <rank>subclass</rank>
3098                             </taxonomy>
3099                             <clade>
3100                               <name>fabids &amp; malvids</name>
3101                               <clade>
3102                                 <taxonomy>
3103                                   <id provider="uniprot">91835</id>
3104                                   <scientific_name>fabids</scientific_name>
3105                                 </taxonomy>
3106                                 <clade>
3107                                   <name>Rosales &amp; Cucurbitales &amp; Fabales</name>
3108                                   <clade>
3109                                     <name>Rosales &amp; Cucurbitales</name>
3110                                     <clade>
3111                                       <taxonomy>
3112                                         <id provider="uniprot">3745</id>
3113                                         <scientific_name>Rosaceae</scientific_name>
3114                                         <rank>family</rank>
3115                                       </taxonomy>
3116                                       <clade>
3117                                         <name>FRAVE</name>
3118                                         <taxonomy>
3119                                           <id provider="uniprot">57918</id>
3120                                           <code>FRAVE</code>
3121                                           <scientific_name>Fragaria vesca</scientific_name>
3122                                           <common_name>Woodland strawberry</common_name>
3123                                           <synonym>Fragaria vesca L.</synonym>
3124                                           <synonym>European strawberry</synonym>
3125                                           <synonym>alpine strawberry</synonym>
3126                                           <rank>species</rank>
3127                                           <uri>http://www.boga.ruhr-uni-bochum.de/html/Fragaria.vesca.ja6.jpg</uri>
3128                                           <uri>http://caliban.mpiz-koeln.mpg.de/thome/band3/tafel_092_small.jpg</uri>
3129                                         </taxonomy>
3130                                       </clade>
3131                                       <clade>
3132                                         <name>PRUPE</name>
3133                                         <taxonomy>
3134                                           <id provider="uniprot">3760</id>
3135                                           <code>PRUPE</code>
3136                                           <scientific_name>Prunus persica</scientific_name>
3137                                           <common_name>Peach</common_name>
3138                                           <synonym>Persica vulgaris</synonym>
3139                                           <synonym>Amygdalus persica</synonym>
3140                                           <rank>species</rank>
3141                                           <uri>http://www.mezhenskyjv.narod.ru/foto_sortov/dokaz.jpg</uri>
3142                                         </taxonomy>
3143                                       </clade>
3144                                     </clade>
3145                                     <clade>
3146                                       <name>CUCSA</name>
3147                                       <taxonomy>
3148                                         <id provider="uniprot">3659</id>
3149                                         <code>CUCSA</code>
3150                                         <scientific_name>Cucumis sativus</scientific_name>
3151                                         <common_name>Cucumber</common_name>
3152                                         <rank>species</rank>
3153                                       </taxonomy>
3154                                     </clade>
3155                                   </clade>
3156                                   <clade>
3157                                     <taxonomy>
3158                                       <id provider="uniprot">3814</id>
3159                                       <scientific_name>Papilionoideae</scientific_name>
3160                                       <rank>subfamily</rank>
3161                                     </taxonomy>
3162                                     <clade>
3163                                       <name>SOYBN</name>
3164                                       <taxonomy>
3165                                         <id provider="uniprot">3847</id>
3166                                         <code>SOYBN</code>
3167                                         <scientific_name>Glycine max</scientific_name>
3168                                         <authority>cv. Wye</authority>
3169                                         <common_name>Soybean</common_name>
3170                                         <synonym>Glycine hispida</synonym>
3171                                         <rank>species</rank>
3172                                       </taxonomy>
3173                                     </clade>
3174                                     <clade>
3175                                       <name>MEDTR</name>
3176                                       <taxonomy>
3177                                         <id provider="uniprot">3880</id>
3178                                         <code>MEDTR</code>
3179                                         <scientific_name>Medicago truncatula</scientific_name>
3180                                         <common_name>Barrel medic</common_name>
3181                                         <synonym>Medicago tribuloides</synonym>
3182                                         <rank>species</rank>
3183                                         <uri>http://crdp.ac-besancon.fr/flore/FABACEAE/photos/medicago_truncatula_30.jpg</uri>
3184                                       </taxonomy>
3185                                     </clade>
3186                                   </clade>
3187                                 </clade>
3188                                 <clade>
3189                                   <taxonomy>
3190                                     <id provider="uniprot">3646</id>
3191                                     <scientific_name>Malpighiales</scientific_name>
3192                                     <rank>order</rank>
3193                                   </taxonomy>
3194                                   <clade>
3195                                     <taxonomy>
3196                                       <id provider="uniprot">3977</id>
3197                                       <scientific_name>Euphorbiaceae</scientific_name>
3198                                       <rank>family</rank>
3199                                     </taxonomy>
3200                                     <clade>
3201                                       <name>MANES</name>
3202                                       <taxonomy>
3203                                         <id provider="uniprot">3983</id>
3204                                         <code>MANES</code>
3205                                         <scientific_name>Manihot esculenta</scientific_name>
3206                                         <common_name>Tapioca</common_name>
3207                                         <synonym>Jatropha manihot</synonym>
3208                                         <rank>species</rank>
3209                                         <uri>http://upload.wikimedia.org/wikipedia/commons/9/99/Iwata_kenichi_cassava.jpg</uri>
3210                                       </taxonomy>
3211                                     </clade>
3212                                     <clade>
3213                                       <name>RICCO</name>
3214                                       <taxonomy>
3215                                         <id provider="uniprot">3988</id>
3216                                         <code>RICCO</code>
3217                                         <scientific_name>Ricinus communis</scientific_name>
3218                                         <common_name>Castor bean</common_name>
3219                                         <synonym>Ricinus sanguineus</synonym>
3220                                         <rank>species</rank>
3221                                         <uri>http://nmorganics.net/wp-content/uploads/2011/09/castor.jpg</uri>
3222                                       </taxonomy>
3223                                     </clade>
3224                                   </clade>
3225                                   <clade>
3226                                     <name>POPTR</name>
3227                                     <taxonomy>
3228                                       <id provider="uniprot">3694</id>
3229                                       <code>POPTR</code>
3230                                       <scientific_name>Populus trichocarpa</scientific_name>
3231                                       <common_name>Western balsam poplar</common_name>
3232                                       <synonym>Populus balsamifera subsp. trichocarpa</synonym>
3233                                       <rank>species</rank>
3234                                     </taxonomy>
3235                                   </clade>
3236                                 </clade>
3237                               </clade>
3238                               <clade>
3239                                 <taxonomy>
3240                                   <id provider="uniprot">91836</id>
3241                                   <scientific_name>malvids</scientific_name>
3242                                 </taxonomy>
3243                                 <clade>
3244                                   <name>Brassicales &amp; Sapindales</name>
3245                                   <clade>
3246                                     <taxonomy>
3247                                       <id provider="uniprot">3699</id>
3248                                       <scientific_name>Brassicales</scientific_name>
3249                                       <rank>order</rank>
3250                                     </taxonomy>
3251                                     <clade>
3252                                       <taxonomy>
3253                                         <id provider="uniprot">3700</id>
3254                                         <scientific_name>Brassicaceae</scientific_name>
3255                                         <rank>family</rank>
3256                                       </taxonomy>
3257                                       <clade>
3258                                         <taxonomy>
3259                                           <id provider="uniprot">3701</id>
3260                                           <scientific_name>Arabidopsis</scientific_name>
3261                                           <rank>genus</rank>
3262                                         </taxonomy>
3263                                         <clade>
3264                                           <name>ARALY</name>
3265                                           <taxonomy>
3266                                             <id provider="uniprot">59689</id>
3267                                             <code>ARALY</code>
3268                                             <scientific_name>Arabidopsis lyrata</scientific_name>
3269                                             <common_name>Lyre-leaved rock-cress</common_name>
3270                                             <rank>species</rank>
3271                                           </taxonomy>
3272                                         </clade>
3273                                         <clade>
3274                                           <name>ARATH</name>
3275                                           <taxonomy>
3276                                             <id provider="uniprot">3702</id>
3277                                             <code>ARATH</code>
3278                                             <scientific_name>Arabidopsis thaliana</scientific_name>
3279                                             <common_name>Mouse-ear cress</common_name>
3280                                             <rank>species</rank>
3281                                           </taxonomy>
3282                                         </clade>
3283                                       </clade>
3284                                       <clade>
3285                                         <taxonomy>
3286                                           <id provider="uniprot">98038</id>
3287                                           <code>THEHA</code>
3288                                           <scientific_name>Thellungiella halophila</scientific_name>
3289                                           <common_name>Salt cress</common_name>
3290                                           <rank>species</rank>
3291                                           <uri>http://thellungiella.org/images/thellun1.jpg</uri>
3292                                         </taxonomy>
3293                                       </clade>
3294                                     </clade>
3295                                     <clade>
3296                                       <name>CARPA</name>
3297                                       <taxonomy>
3298                                         <id provider="uniprot">3649</id>
3299                                         <code>CARPA</code>
3300                                         <scientific_name>Carica papaya</scientific_name>
3301                                         <common_name>Papaya</common_name>
3302                                         <rank>species</rank>
3303                                         <uri>http://www.biopix.com/photos/jko-carica-papaya-00412.jpg</uri>
3304                                         <uri>http://www.texasriviera.com/greenthumbs/papaya10.jpg</uri>
3305                                       </taxonomy>
3306                                     </clade>
3307                                   </clade>
3308                                   <clade>
3309                                     <taxonomy>
3310                                       <id provider="uniprot">2706</id>
3311                                       <scientific_name>Citrus</scientific_name>
3312                                       <rank>genus</rank>
3313                                     </taxonomy>
3314                                     <clade>
3315                                       <name>CITCLE</name>
3316                                       <taxonomy>
3317                                         <id provider="uniprot">85681</id>
3318                                         <scientific_name>Citrus clementina</scientific_name>
3319                                         <synonym>Citrus clementina hort. ex Tanaka</synonym>
3320                                         <rank>species</rank>
3321                                         <uri>http://palmen-bolschetz.de/images/citrus%20clementine.jpg</uri>
3322                                       </taxonomy>
3323                                     </clade>
3324                                     <clade>
3325                                       <name>CITSI</name>
3326                                       <taxonomy>
3327                                         <id provider="uniprot">2711</id>
3328                                         <code>CITSI</code>
3329                                         <scientific_name>Citrus sinensis</scientific_name>
3330                                         <common_name>Sweet orange</common_name>
3331                                         <synonym>Citrus x sinensis</synonym>
3332                                         <synonym>Citrus aurantium var. sinensis</synonym>
3333                                         <rank>species</rank>
3334                                         <uri>http://www.west-crete.com/flowers/photos/citrus_sinensis-1.jpg</uri>
3335                                       </taxonomy>
3336                                     </clade>
3337                                   </clade>
3338                                 </clade>
3339                                 <clade>
3340                                   <name>EUCGR</name>
3341                                   <taxonomy>
3342                                     <id provider="uniprot">71139</id>
3343                                     <code>EUCGR</code>
3344                                     <scientific_name>Eucalyptus grandis</scientific_name>
3345                                     <common_name>Flooded gum</common_name>
3346                                     <rank>species</rank>
3347                                     <uri>http://www.calflora.net/losangelesarboretum/images/eucalyptus_grandis.jpg</uri>
3348                                     <uri>http://www.anbg.gov.au/projects/eucalypts/images/eucalyptus-grandis-bark.jpg</uri>
3349                                   </taxonomy>
3350                                 </clade>
3351                               </clade>
3352                             </clade>
3353                             <clade>
3354                               <name>VITVI</name>
3355                               <taxonomy>
3356                                 <id provider="eol">582304</id>
3357                                 <code>VITVI</code>
3358                                 <scientific_name>Vitis vinifera</scientific_name>
3359                                 <common_name>Grape</common_name>
3360                                 <rank>species</rank>
3361                               </taxonomy>
3362                             </clade>
3363                           </clade>
3364                           <clade>
3365                             <taxonomy>
3366                               <id provider="uniprot">91888</id>
3367                               <scientific_name>lamiids</scientific_name>
3368                             </taxonomy>
3369                             <clade>
3370                               <taxonomy>
3371                                 <id provider="uniprot">4070</id>
3372                                 <scientific_name>Solanaceae</scientific_name>
3373                                 <rank>family</rank>
3374                               </taxonomy>
3375                               <clade>
3376                                 <taxonomy>
3377                                   <id provider="uniprot">4107</id>
3378                                   <scientific_name>Solanum</scientific_name>
3379                                   <rank>genus</rank>
3380                                 </taxonomy>
3381                                 <clade>
3382                                   <taxonomy>
3383                                     <id provider="uniprot">49274</id>
3384                                     <scientific_name>Lycopersicon</scientific_name>
3385                                     <rank>subgenus</rank>
3386                                   </taxonomy>
3387                                   <clade>
3388                                     <taxonomy>
3389                                       <id provider="uniprot">4081</id>
3390                                       <code>SOLLC</code>
3391                                       <scientific_name>Solanum lycopersicum</scientific_name>
3392                                       <common_name>Tomato</common_name>
3393                                       <synonym>Lycopersicon esculentum</synonym>
3394                                       <rank>species</rank>
3395                                       <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0905/1214.jpeg</uri>
3396                                     </taxonomy>
3397                                   </clade>
3398                                   <clade>
3399                                     <taxonomy>
3400                                       <id provider="uniprot">4084</id>
3401                                       <code>SOLPI</code>
3402                                       <scientific_name>Solanum pimpinellifolium</scientific_name>
3403                                       <common_name>Currant tomato</common_name>
3404                                       <synonym>Lycopersicon pimpinellifolium</synonym>
3405                                       <rank>species</rank>
3406                                       <uri>http://botany.csdl.tamu.edu/FLORA/hdwimages2/hdwt4-14.jpg</uri>
3407                                     </taxonomy>
3408                                   </clade>
3409                                 </clade>
3410                                 <clade>
3411                                   <taxonomy>
3412                                     <id provider="4113">uniprot</id>
3413                                     <code>SOLTU</code>
3414                                     <scientific_name>Solanum tuberosum</scientific_name>
3415                                     <common_name>Potato</common_name>
3416                                     <rank>species</rank>
3417                                     <uri>http://www.hear.org/starr/images/images/plants/600/starr-080914-9947.jpg</uri>
3418                                   </taxonomy>
3419                                 </clade>
3420                               </clade>
3421                               <clade>
3422                                 <taxonomy>
3423                                   <id provider="uniprot">4097</id>
3424                                   <code>TOBAC</code>
3425                                   <scientific_name>Nicotiana tabacum</scientific_name>
3426                                   <common_name>Common tobacco</common_name>
3427                                   <rank>species</rank>
3428                                   <uri>http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0105/2073.jpeg</uri>
3429                                 </taxonomy>
3430                               </clade>
3431                             </clade>
3432                             <clade>
3433                               <name>MIMGU</name>
3434                               <taxonomy>
3435                                 <id provider="uniprot">4155</id>
3436                                 <code>MIMGU</code>
3437                                 <scientific_name>Mimulus guttatus</scientific_name>
3438                                 <common_name>Yellow monkey flower</common_name>
3439                                 <synonym>Yellow monkey flower</synonym>
3440                                 <rank>species</rank>
3441                               </taxonomy>
3442                             </clade>
3443                           </clade>
3444                         </clade>
3445                         <clade>
3446                           <name>AQUCA</name>
3447                           <taxonomy>
3448                             <id provider="uniprot">218851</id>
3449                             <code>AQUCA</code>
3450                             <scientific_name>Aquilegia caerulea</scientific_name>
3451                             <authority>E.James</authority>
3452                             <common_name>Rocky mountain columbine</common_name>
3453                             <synonym>Aquilegia coerulea</synonym>
3454                             <rank>species</rank>
3455                             <uri>http://content9.eol.org/content/2010/01/01/03/15137_large.jpg</uri>
3456                           </taxonomy>
3457                         </clade>
3458                       </clade>
3459                       <clade>
3460                         <taxonomy>
3461                           <id provider="uniprot">4479</id>
3462                           <scientific_name>Poaceae</scientific_name>
3463                           <common_name>grass family</common_name>
3464                           <synonym>Gramineae</synonym>
3465                           <rank>family</rank>
3466                         </taxonomy>
3467                         <clade>
3468                           <taxonomy>
3469                             <id provider="uniprot">147369</id>
3470                             <scientific_name>Panicoideae</scientific_name>
3471                             <authority>Link, 1827</authority>
3472                             <synonym>Centothecoideae</synonym>
3473                             <rank>subfamily</rank>
3474                           </taxonomy>
3475                           <clade>
3476                             <taxonomy>
3477                               <id provider="uniprot">147429</id>
3478                               <scientific_name>Andropogoneae</scientific_name>
3479                               <authority>Dumort., 1824</authority>
3480                               <rank>tribe</rank>
3481                             </taxonomy>
3482                             <clade>
3483                               <name>SORBI</name>
3484                               <taxonomy>
3485                                 <id provider="uniprot">4558</id>
3486                                 <code>SORBI</code>
3487                                 <scientific_name>Sorghum bicolor</scientific_name>
3488                                 <common_name>Sorghum</common_name>
3489                                 <synonym>Sorghum vulgare</synonym>
3490                                 <rank>species</rank>
3491                               </taxonomy>
3492                             </clade>
3493                             <clade>
3494                               <name>MAIZE</name>
3495                               <taxonomy>
3496                                 <id provider="uniprot">4577</id>
3497                                 <code>MAIZE</code>
3498                                 <scientific_name>Zea mays</scientific_name>
3499                                 <common_name>Maize</common_name>
3500                                 <rank>species</rank>
3501                               </taxonomy>
3502                             </clade>
3503                           </clade>
3504                           <clade>
3505                             <taxonomy>
3506                               <id provider="uniprot">147428</id>
3507                               <scientific_name>Paniceae</scientific_name>
3508                               <rank>tribe</rank>
3509                             </taxonomy>
3510                             <clade>
3511                               <name>PANVIR</name>
3512                               <taxonomy>
3513                                 <id provider="uniprot">38727</id>
3514                                 <scientific_name>Panicum virgatum</scientific_name>
3515                                 <common_name>switchgrass</common_name>
3516                                 <rank>species</rank>
3517                                 <uri>http://upload.wikimedia.org/wikipedia/commons/thumb/2/29/PanicumVirgatum.jpg/220px-PanicumVirgatum.jpg</uri>
3518                               </taxonomy>
3519                             </clade>
3520                             <clade>
3521                               <name>SETIT</name>
3522                               <taxonomy>
3523                                 <id provider="uniprot">4555</id>
3524                                 <code>SETIT</code>
3525                                 <scientific_name>Setaria italica</scientific_name>
3526                                 <common_name>Foxtail millet</common_name>
3527                                 <synonym>Panicum italicum</synonym>
3528                                 <rank>species</rank>
3529                                 <uri>http://en.academic.ru/pictures/enwiki/83/Setaria_italica0.jpg</uri>
3530                               </taxonomy>
3531                             </clade>
3532                           </clade>
3533                         </clade>
3534                         <clade>
3535                           <taxonomy>
3536                             <id provider="uniprot">359160</id>
3537                             <scientific_name>BEP clade</scientific_name>
3538                           </taxonomy>
3539                           <clade>
3540                             <taxonomy>
3541                               <id provider="uniprot">4527</id>
3542                               <scientific_name>Oryza</scientific_name>
3543                               <rank>genus</rank>
3544                             </taxonomy>
3545                             <clade>
3546                               <name>ORYSA</name>
3547                               <taxonomy>
3548                                 <id provider="uniprot">4530</id>
3549                                 <code>ORYSA</code>
3550                                 <scientific_name>Oryza sativa</scientific_name>
3551                                 <common_name>Rice</common_name>
3552                                 <rank>species</rank>
3553                               </taxonomy>
3554                             </clade>
3555                             <clade>
3556                               <name>ORYSJ</name>
3557                               <taxonomy>
3558                                 <id provider="uniprot">39947</id>
3559                                 <code>ORYSJ</code>
3560                                 <scientific_name>Oryza sativa subsp. japonica</scientific_name>
3561                                 <common_name>Rice</common_name>
3562                               </taxonomy>
3563                             </clade>
3564                           </clade>
3565                           <clade>
3566                             <name>BRADI</name>
3567                             <taxonomy>
3568                               <id provider="uniprot">15368</id>
3569                               <code>BRADI</code>
3570                               <scientific_name>Brachypodium distachyon</scientific_name>
3571                               <common_name>Purple false brome</common_name>
3572                               <synonym>Trachynia distachya</synonym>
3573                               <rank>species</rank>
3574                               <uri>http://content5.eol.org/content/2011/01/15/20/16311_large.jpg</uri>
3575                             </taxonomy>
3576                           </clade>
3577                         </clade>
3578                       </clade>
3579                     </clade>
3580                     <clade>
3581                       <name>SELMO</name>
3582                       <taxonomy>
3583                         <id provider="uniprot">34167</id>
3584                         <code>SELMO</code>
3585                         <scientific_name>Selaginella mollis</scientific_name>
3586                         <common_name>Moss</common_name>
3587                         <rank>species</rank>
3588                       </taxonomy>
3589                     </clade>
3590                   </clade>
3591                   <clade>
3592                     <name>PHYPA</name>
3593                     <taxonomy>
3594                       <id provider="uniprot">145481</id>
3595                       <code>PHYPA</code>
3596                       <scientific_name>Physcomitrella patens subsp. patens</scientific_name>
3597                       <common_name>Moss</common_name>
3598                       <rank>subspecies</rank>
3599                     </taxonomy>
3600                   </clade>
3601                 </clade>
3602                 <clade>
3603                   <taxonomy>
3604                     <id provider="uniprot">3041</id>
3605                     <scientific_name>Chlorophyta</scientific_name>
3606                     <rank>phylum</rank>
3607                   </taxonomy>
3608                   <clade>
3609                     <taxonomy>
3610                       <id provider="uniprot">13792</id>
3611                       <scientific_name>Mamiellales</scientific_name>
3612                       <rank>order</rank>
3613                     </taxonomy>
3614                     <clade>
3615                       <taxonomy>
3616                         <id provider="uniprot">70447</id>
3617                         <scientific_name>Ostreococcus</scientific_name>
3618                         <rank>genus</rank>
3619                       </taxonomy>
3620                       <clade>
3621                         <name>OSTLU</name>
3622                         <taxonomy>
3623                           <id provider="uniprot">436017</id>
3624                           <code>OSTLU</code>
3625                           <scientific_name>Ostreococcus lucimarinus (strain CCE9901)</scientific_name>
3626                         </taxonomy>
3627                       </clade>
3628                       <clade>
3629                         <name>OSTRC</name>
3630                         <taxonomy>
3631                           <id provider="uniprot">385169</id>
3632                           <scientific_name>Ostreococcus sp. RCC809</scientific_name>
3633                           <rank>species</rank>
3634                         </taxonomy>
3635                       </clade>
3636                       <clade>
3637                         <name>OSTTA</name>
3638                         <taxonomy>
3639                           <id provider="uniprot">70448</id>
3640                           <code>OSTTA</code>
3641                           <scientific_name>Ostreococcus tauri</scientific_name>
3642                           <rank>species</rank>
3643                         </taxonomy>
3644                       </clade>
3645                     </clade>
3646                     <clade>
3647                       <taxonomy>
3648                         <id provider="uniprot">38832</id>
3649                         <scientific_name>Micromonas</scientific_name>
3650                         <rank>genus</rank>
3651                       </taxonomy>
3652                       <clade>
3653                         <name>MICPC</name>
3654                         <taxonomy>
3655                           <id provider="uniprot">564608</id>
3656                           <code>MICPC</code>
3657                           <scientific_name>Micromonas pusilla (strain CCMP1545)</scientific_name>
3658                           <common_name>Picoplanktonic green alga</common_name>
3659                         </taxonomy>
3660                       </clade>
3661                       <clade>
3662                         <name>MICSR</name>
3663                         <taxonomy>
3664                           <id provider="uniprot">296587</id>
3665                           <code>MICSR</code>
3666                           <scientific_name>Micromonas sp. (strain RCC299 / NOUM17)</scientific_name>
3667                           <common_name>Picoplanktonic green alga</common_name>
3668                           <synonym>Micromonas sp. RCC299</synonym>
3669                           <rank>species</rank>
3670                         </taxonomy>
3671                       </clade>
3672                     </clade>
3673                   </clade>
3674                   <clade>
3675                     <name>Trebouxiophyceae &amp; Chlorophyceae</name>
3676                     <clade>
3677                       <taxonomy>
3678                         <id provider="uniprot">75966</id>
3679                         <scientific_name>Trebouxiophyceae</scientific_name>
3680                         <rank>class</rank>
3681                       </taxonomy>
3682                       <clade>
3683                         <name>ASTSPC</name>
3684                         <taxonomy>
3685                           <id provider="uniprot">763042</id>
3686                           <scientific_name>Asterochloris sp. Cgr/DA1pho</scientific_name>
3687                           <rank>species</rank>
3688                           <uri>http://genome.jgi-psf.org/Astpho1/Figure_3.jpg</uri>
3689                         </taxonomy>
3690                       </clade>
3691                       <clade>
3692                         <name>CHLSP</name>
3693                         <taxonomy>
3694                           <id provider="uniprot">554065</id>
3695                           <scientific_name>Chlorella variabilis</scientific_name>
3696                           <synonym>Chlorella sp. NC64A</synonym>
3697                           <rank>species</rank>
3698                         </taxonomy>
3699                       </clade>
3700                       <clade>
3701                         <name>CHLVUL</name>
3702                         <taxonomy>
3703                           <id provider="uniprot">574566</id>
3704                           <scientific_name>Coccomyxa sp. C-169</scientific_name>
3705                           <synonym>Chlorella vulgaris C-169</synonym>
3706                           <rank>species</rank>
3707                         </taxonomy>
3708                       </clade>
3709                     </clade>
3710                     <clade>
3711                       <taxonomy>
3712                         <id provider="uniprot">3042</id>
3713                         <scientific_name>Chlamydomonadales</scientific_name>
3714                         <rank>order</rank>
3715                       </taxonomy>
3716                       <clade>
3717                         <name>CHLRE</name>
3718                         <taxonomy>
3719                           <id provider="uniprot">3055</id>
3720                           <code>CHLRE</code>
3721                           <scientific_name>Chlamydomonas reinhardtii</scientific_name>
3722                           <synonym>Chlamydomonas smithii</synonym>
3723                           <rank>species</rank>
3724                         </taxonomy>
3725                       </clade>
3726                       <clade>
3727                         <name>VOLCA</name>
3728                         <taxonomy>
3729                           <id provider="uniprot">3067</id>
3730                           <code>VOLCA</code>
3731                           <scientific_name>Volvox carteri</scientific_name>
3732                           <common_name>Green alga</common_name>
3733                           <rank>species</rank>
3734                         </taxonomy>
3735                       </clade>
3736                     </clade>
3737                   </clade>
3738                 </clade>
3739               </clade>
3740               <clade>
3741                 <name>CYAME</name>
3742                 <taxonomy>
3743                   <id provider="uniprot">45157</id>
3744                   <code>CYAME</code>
3745                   <scientific_name>Cyanidioschyzon merolae</scientific_name>
3746                   <common_name>Red alga</common_name>
3747                   <rank>species</rank>
3748                   <uri>http://merolae.biol.s.u-tokyo.ac.jp/</uri>
3749                 </taxonomy>
3750               </clade>
3751             </clade>
3752             <clade>
3753               <name>Chromalveolate</name>
3754               <reference doi="10.1073/pnas.0712248105">
3755               </reference>
3756               <clade>
3757                 <name>Heterokonta_Alveolata</name>
3758                 <clade>
3759                   <name>Alveolata</name>
3760                   <taxonomy>
3761                     <id provider="uniprot">33630</id>
3762                     <scientific_name>Alveolata</scientific_name>
3763                   </taxonomy>
3764                   <clade>
3765                     <taxonomy>
3766                       <id provider="uniprot">5794</id>
3767                       <scientific_name>Apicomplexa</scientific_name>
3768                       <rank>phylum</rank>
3769                     </taxonomy>
3770                     <clade>
3771                       <taxonomy>
3772                         <id provider="uniprot">422676</id>
3773                         <scientific_name>Aconoidasida</scientific_name>
3774                         <rank>class</rank>
3775                       </taxonomy>
3776                       <clade>
3777                         <taxonomy>
3778                           <id provider="uniprot">5820</id>
3779                           <scientific_name>Plasmodium</scientific_name>
3780                           <rank>genus</rank>
3781                         </taxonomy>
3782                         <clade>
3783                           <name>PLACH</name>
3784                           <taxonomy>
3785                             <id provider="uniprot">5825</id>
3786                             <code>PLACH</code>
3787                             <scientific_name>Plasmodium chabaudi</scientific_name>
3788                             <rank>species</rank>
3789                           </taxonomy>
3790                         </clade>
3791                         <clade>
3792                           <name>PLAFA</name>
3793                           <taxonomy>
3794                             <id provider="uniprot">5833</id>
3795                             <code>PLAFA</code>
3796                             <scientific_name>Plasmodium falciparum</scientific_name>
3797                             <rank>species</rank>
3798                           </taxonomy>
3799                         </clade>
3800                         <clade>
3801                           <name>PLAYO</name>
3802                           <taxonomy>
3803                             <id provider="uniprot">73239</id>
3804                             <code>PLAYO</code>
3805                             <scientific_name>Plasmodium yoelii yoelii</scientific_name>
3806                             <rank>subspecies</rank>
3807                           </taxonomy>
3808                         </clade>
3809                       </clade>
3810                       <clade>
3811                         <name>Theileria</name>
3812                         <taxonomy>
3813                           <id provider="uniprot">5873</id>
3814                           <scientific_name>Theileria</scientific_name>
3815                           <rank>genus</rank>
3816                         </taxonomy>
3817                         <clade>
3818                           <name>THEAN</name>
3819                           <taxonomy>
3820                             <id provider="uniprot">5874</id>
3821                             <code>THEAN</code>
3822                             <scientific_name>Theileria annulata</scientific_name>
3823                             <rank>species</rank>
3824                           </taxonomy>
3825                         </clade>
3826                         <clade>
3827                           <name>THEPA</name>
3828                           <taxonomy>
3829                             <id provider="uniprot">5875</id>
3830                             <code>THEPA</code>
3831                             <scientific_name>Theileria parva</scientific_name>
3832                             <rank>species</rank>
3833                           </taxonomy>
3834                         </clade>
3835                       </clade>
3836                     </clade>
3837                     <clade>
3838                       <taxonomy>
3839                         <id provider="uniprot">423054</id>
3840                         <scientific_name>Eimeriorina</scientific_name>
3841                         <rank>suborder</rank>
3842                       </taxonomy>
3843                       <clade>
3844                         <taxonomy>
3845                           <id provider="uniprot">5806</id>
3846                           <scientific_name>Cryptosporidium</scientific_name>
3847                           <rank>genus</rank>
3848                         </taxonomy>
3849                         <clade>
3850                           <name>CRYHO</name>
3851                           <taxonomy>
3852                             <id provider="uniprot">237895</id>
3853                             <code>CRYHO</code>
3854                             <scientific_name>Cryptosporidium hominis</scientific_name>
3855                             <rank>species</rank>
3856                           </taxonomy>
3857                         </clade>
3858                         <clade>
3859                           <name>CRYPV</name>
3860                           <taxonomy>
3861                             <id provider="uniprot">5807</id>
3862                             <code>CRYPV</code>
3863                             <scientific_name>Cryptosporidium parvum</scientific_name>
3864                             <rank>species</rank>
3865                           </taxonomy>
3866                         </clade>
3867                       </clade>
3868                       <clade>
3869                         <name>Eimeria &amp; Toxoplasma</name>
3870                         <distribution>
3871                           <point geodetic_datum="?" alt_unit="?">
3872                             <lat>0</lat>
3873                             <long>0</long>
3874                             <alt>0</alt>
3875                           </point>
3876                         </distribution>
3877                         <reference doi="10.1093/molbev/msn213">
3878                           <desc>The Apicomplexan Whole-Genome Phylogeny: An Analysis of Incongruence among Gene Trees</desc>
3879                         </reference>
3880                         <reference>
3881                         </reference>
3882                         <clade>
3883                           <taxonomy>
3884                             <id provider="uniprot">5802</id>
3885                             <code>EIMTE</code>
3886                             <scientific_name>Eimeria tenella</scientific_name>
3887                             <common_name>Coccidian parasite</common_name>
3888                             <rank>species</rank>
3889                             <uri>http://www.k-state.edu/parasitology/625tutorials/FIGtenella.jpg</uri>
3890                           </taxonomy>
3891                         </clade>
3892                         <clade>
3893                           <name>TOXGO</name>
3894                           <taxonomy>
3895                             <id provider="uniprot">5811</id>
3896                             <code>TOXGO</code>
3897                             <scientific_name>Toxoplasma gondii</scientific_name>
3898                             <rank>species</rank>
3899                           </taxonomy>
3900                         </clade>
3901                       </clade>
3902                     </clade>
3903                   </clade>
3904                   <clade>
3905                     <taxonomy>
3906                       <id provider="uniprot">6020</id>
3907                       <scientific_name>Oligohymenophorea</scientific_name>
3908                       <rank>class</rank>
3909                     </taxonomy>
3910                     <clade>
3911                       <name>PARTE</name>
3912                       <taxonomy>
3913                         <id provider="uniprot">5888</id>
3914                         <code>PARTE</code>
3915                         <scientific_name>Paramecium tetraurelia</scientific_name>
3916                         <rank>species</rank>
3917                       </taxonomy>
3918                     </clade>
3919                     <clade>
3920                       <name>TETTH</name>
3921                       <taxonomy>
3922                         <id provider="uniprot">5911</id>
3923                         <code>TETTH</code>
3924                         <scientific_name>Tetrahymena thermophila</scientific_name>
3925                         <rank>species</rank>
3926                       </taxonomy>
3927                     </clade>
3928                   </clade>
3929                 </clade>
3930                 <clade>
3931                   <name>Heterokonta</name>
3932                   <taxonomy>
3933                     <id provider="uniprot">33634</id>
3934                     <scientific_name>stramenopiles</scientific_name>
3935                     <synonym>Chromophyta</synonym>
3936                   </taxonomy>
3937                   <clade>
3938                     <name>Pelagophyceae_Bacillariophyta</name>
3939                     <clade>
3940                       <taxonomy>
3941                         <id provider="uniprot">2836</id>
3942                         <scientific_name>Bacillariophyta</scientific_name>
3943                         <common_name>diatoms</common_name>
3944                         <rank>phylum</rank>
3945                       </taxonomy>
3946                       <clade>
3947                         <taxonomy>
3948                           <id provider="uniprot">33850</id>
3949                           <scientific_name>Bacillariophycidae</scientific_name>
3950                         </taxonomy>
3951                         <clade>
3952                           <name>FRACY</name>
3953                           <taxonomy>
3954                             <id provider="eol">911694</id>
3955                             <code>FRACY</code>
3956                             <scientific_name>Fragilariopsis cylindrus</scientific_name>
3957                             <authority>Krieger</authority>
3958                             <synonym>Nitzschia cylindrus</synonym>
3959                             <rank>species</rank>
3960                           </taxonomy>
3961                         </clade>
3962                         <clade>
3963                           <name>PHATR</name>
3964                           <taxonomy>
3965                             <id provider="eol">912693</id>
3966                             <code>PHATR</code>
3967                             <scientific_name>Phaeodactylum tricornutum</scientific_name>
3968                             <authority>Bohlin</authority>
3969                             <rank>species</rank>
3970                           </taxonomy>
3971                         </clade>
3972                       </clade>
3973                       <clade>
3974                         <name>THAPS</name>
3975                         <taxonomy>
3976                           <id provider="eol">916868</id>
3977                           <code>THAPS</code>
3978                           <scientific_name>Thalassiosira pseudonana</scientific_name>
3979                           <authority>Hasle &amp; Heimdal</authority>
3980                           <common_name>Marine diatom</common_name>
3981                           <synonym>Cyclotella nana</synonym>
3982                           <rank>species</rank>
3983                         </taxonomy>
3984                       </clade>
3985                     </clade>
3986                     <clade>
3987                       <name>AURAN</name>
3988                       <taxonomy>
3989                         <id provider="eol">912461</id>
3990                         <code>AURAN</code>
3991                         <scientific_name>Aureococcus anophagefferens</scientific_name>
3992                         <authority>Hargraves &amp; Sieburth</authority>
3993                         <rank>species</rank>
3994                       </taxonomy>
3995                     </clade>
3996                   </clade>
3997                   <clade>
3998                     <taxonomy>
3999                       <id provider="uniprot">4783</id>
4000                       <scientific_name>Phytophthora</scientific_name>
4001                       <rank>genus</rank>
4002                     </taxonomy>
4003                     <clade>
4004                       <name>PHYIN</name>
4005                       <taxonomy>
4006                         <id provider="uniprot">4787</id>
4007                         <code>PHYIN</code>
4008                         <scientific_name>Phytophthora infestans</scientific_name>
4009                         <common_name>Potato late blight fungus</common_name>
4010                         <rank>species</rank>
4011                       </taxonomy>
4012                     </clade>
4013                     <clade>
4014                       <name>PHYRM</name>
4015                       <taxonomy>
4016                         <id provider="uniprot">164328</id>
4017                         <code>PHYRM</code>
4018                         <scientific_name>Phytophthora ramorum</scientific_name>
4019                         <common_name>Sudden oak death agent</common_name>
4020                         <rank>species</rank>
4021                       </taxonomy>
4022                     </clade>
4023                     <clade>
4024                       <name>PHYSO</name>
4025                       <taxonomy>
4026                         <id provider="uniprot">67593</id>
4027                         <scientific_name>Phytophthora sojae</scientific_name>
4028                         <rank>species</rank>
4029                       </taxonomy>
4030                     </clade>
4031                   </clade>
4032                 </clade>
4033               </clade>
4034               <clade>
4035                 <name>EMIHU</name>
4036                 <taxonomy>
4037                   <id provider="uniprot">2903</id>
4038                   <code>EMIHU</code>
4039                   <scientific_name>Emiliania huxleyi</scientific_name>
4040                   <rank>species</rank>
4041                 </taxonomy>
4042               </clade>
4043             </clade>
4044           </clade>
4045           <clade>
4046             <name>Excavata</name>
4047             <reference doi="10.1038/nature04546">
4048             </reference>
4049             <clade>
4050               <name>Kinetoplastida_Heterolobosea</name>
4051               <clade>
4052                 <taxonomy>
4053                   <id provider="uniprot">5654</id>
4054                   <scientific_name>Trypanosomatidae</scientific_name>
4055                   <rank>family</rank>
4056                 </taxonomy>
4057                 <clade>
4058                   <name>LEIMA</name>
4059                   <taxonomy>
4060                     <id provider="uniprot">5664</id>
4061                     <code>LEIMA</code>
4062                     <scientific_name>Leishmania major</scientific_name>
4063                     <rank>species</rank>
4064                   </taxonomy>
4065                 </clade>
4066                 <clade>
4067                   <name>TRYBB</name>
4068                   <taxonomy>
4069                     <id provider="uniprot">5702</id>
4070                     <code>TRYBB</code>
4071                     <scientific_name>Trypanosoma brucei brucei</scientific_name>
4072                     <rank>subspecies</rank>
4073                   </taxonomy>
4074                 </clade>
4075               </clade>
4076               <clade>
4077                 <name>NAEGR</name>
4078                 <taxonomy>
4079                   <id provider="uniprot">5762</id>
4080                   <code>NAEGR</code>
4081                   <scientific_name>Naegleria gruberi</scientific_name>
4082                   <common_name>Amoeba</common_name>
4083                   <rank>species</rank>
4084                 </taxonomy>
4085               </clade>
4086             </clade>
4087             <clade>
4088               <name>Metamonada</name>
4089               <clade>
4090                 <name>GIALA</name>
4091                 <taxonomy>
4092                   <id provider="uniprot">5741</id>
4093                   <code>GIALA</code>
4094                   <scientific_name>Giardia lamblia</scientific_name>
4095                   <synonym>Giardia intestinalis</synonym>
4096                   <synonym>Giardia lamblia</synonym>
4097                   <rank>species</rank>
4098                 </taxonomy>
4099               </clade>
4100               <clade>
4101                 <name>TRIVA</name>
4102                 <taxonomy>
4103                   <id provider="uniprot">5722</id>
4104                   <code>TRIVA</code>
4105                   <scientific_name>Trichomonas vaginalis</scientific_name>
4106                   <rank>species</rank>
4107                 </taxonomy>
4108               </clade>
4109             </clade>
4110           </clade>
4111         </clade>
4112       </clade>
4113       <clade>
4114         <name>Archaea</name>
4115         <taxonomy>
4116           <id provider="uniprot">2157</id>
4117           <scientific_name>Archaea</scientific_name>
4118           <rank>superkingdom</rank>
4119         </taxonomy>
4120         <clade>
4121           <name>a_62</name>
4122           <clade>
4123             <name>a_56</name>
4124             <clade>
4125               <taxonomy>
4126                 <id provider="uniprot">28890</id>
4127                 <scientific_name>Euryarchaeota</scientific_name>
4128                 <rank>phylum</rank>
4129               </taxonomy>
4130               <clade>
4131                 <name>a_44</name>
4132                 <clade>
4133                   <name>a_28</name>
4134                   <clade>
4135                     <name>a_26</name>
4136                     <clade>
4137                       <taxonomy>
4138                         <id provider="uniprot">224756</id>
4139                         <scientific_name>Methanomicrobia</scientific_name>
4140                         <rank>class</rank>
4141                       </taxonomy>
4142                       <clade>
4143                         <name>a_14</name>
4144                         <clade>
4145                           <name>a_12</name>
4146                           <clade>
4147                             <taxonomy>
4148                               <id provider="uniprot">2206</id>
4149                               <scientific_name>Methanosarcinaceae</scientific_name>
4150                               <rank>family</rank>
4151                             </taxonomy>
4152                             <clade>
4153                               <taxonomy>
4154                                 <id provider="uniprot">2207</id>
4155                                 <scientific_name>Methanosarcina</scientific_name>
4156                                 <rank>genus</rank>
4157                               </taxonomy>
4158                               <clade>
4159                                 <name>a_2</name>
4160                                 <clade>
4161                                   <name>METAC</name>
4162                                   <taxonomy>
4163                                     <id provider="uniprot">2214</id>
4164                                     <code>METAC</code>
4165                                     <scientific_name>Methanosarcina acetivorans</scientific_name>
4166                                     <rank>species</rank>
4167                                   </taxonomy>
4168                                 </clade>
4169                                 <clade>
4170                                   <name>METBF</name>
4171                                   <taxonomy>
4172                                     <id provider="uniprot">269797</id>
4173                                     <code>METBF</code>
4174                                     <scientific_name>Methanosarcina barkeri (strain Fusaro / DSM 804)</scientific_name>
4175                                   </taxonomy>
4176                                 </clade>
4177                               </clade>
4178                               <clade>
4179                                 <name>METMA</name>
4180                                 <taxonomy>
4181                                   <id provider="uniprot">2209</id>
4182                                   <code>METMA</code>
4183                                   <scientific_name>Methanosarcina mazei</scientific_name>
4184                                   <synonym>Methanosarcina frisia</synonym>
4185                                   <rank>species</rank>
4186                                 </taxonomy>
4187                               </clade>
4188                             </clade>
4189                             <clade>
4190                               <name>METBU</name>
4191                               <taxonomy>
4192                                 <id provider="uniprot">259564</id>
4193                                 <code>METBU</code>
4194                                 <scientific_name>Methanococcoides burtonii (strain DSM 6242)</scientific_name>
4195                               </taxonomy>
4196                             </clade>
4197                           </clade>
4198                           <clade>
4199                             <name>a_11</name>
4200                             <taxonomy>
4201                               <id provider="uniprot">2191</id>
4202                               <scientific_name>Methanomicrobiales</scientific_name>
4203                               <rank>order</rank>
4204                             </taxonomy>
4205                             <clade>
4206                               <name>a_9</name>
4207                               <clade>
4208                                 <name>METB6</name>
4209                                 <taxonomy>
4210                                   <id provider="uniprot">456442</id>
4211                                   <code>METB6</code>
4212                                   <scientific_name>Methanoregula boonei (strain 6A8)</scientific_name>
4213                                 </taxonomy>
4214                               </clade>
4215                               <clade>
4216                                 <name>METHU</name>
4217                                 <taxonomy>
4218                                   <id provider="uniprot">2203</id>
4219                                   <code>METHU</code>
4220                                   <scientific_name>Methanospirillum hungatei</scientific_name>
4221                                   <rank>species</rank>
4222                                 </taxonomy>
4223                               </clade>
4224                             </clade>
4225                             <clade>
4226                               <name>METMJ</name>
4227                               <taxonomy>
4228                                 <id provider="uniprot">368407</id>
4229                                 <code>METMJ</code>
4230                                 <scientific_name>Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)</scientific_name>
4231                               </taxonomy>
4232                             </clade>
4233                           </clade>
4234                         </clade>
4235                         <clade>
4236                           <name>METLZ</name>
4237                           <taxonomy>
4238                             <id provider="uniprot">410358</id>
4239                             <code>METLZ</code>
4240                             <scientific_name>Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z)</scientific_name>
4241                           </taxonomy>
4242                         </clade>
4243                       </clade>
4244                       <clade>
4245                         <name>METTP</name>
4246                         <taxonomy>
4247                           <id provider="uniprot">349307</id>
4248                           <code>METTP</code>
4249                           <scientific_name>Methanosaeta thermophila (strain DSM 6194 / PT)</scientific_name>
4250                           <synonym>Methanothrix thermophila (strain DSM 6194 / PT)</synonym>
4251                         </taxonomy>
4252                       </clade>
4253                     </clade>
4254                     <clade>
4255                       <name>a_25</name>
4256                       <taxonomy>
4257                         <id provider="uniprot">2236</id>
4258                         <scientific_name>Halobacteriaceae</scientific_name>
4259                         <rank>family</rank>
4260                       </taxonomy>
4261                       <clade>
4262                         <name>a_23</name>
4263                         <clade>
4264                           <name>a_19</name>
4265                           <clade>
4266                             <name>HALMA</name>
4267                             <taxonomy>
4268                               <id provider="uniprot">2238</id>
4269                               <code>HALMA</code>
4270                               <scientific_name>Haloarcula marismortui</scientific_name>
4271                               <synonym>Halobacterium marismortui</synonym>
4272                               <rank>species</rank>
4273                             </taxonomy>
4274                           </clade>
4275                           <clade>
4276                             <name>NATPH</name>
4277                             <taxonomy>
4278                               <id provider="uniprot">2257</id>
4279                               <code>NATPH</code>
4280                               <scientific_name>Natronomonas pharaonis</scientific_name>
4281                               <common_name>Natronobacterium pharaonis</common_name>
4282                               <rank>species</rank>
4283                             </taxonomy>
4284                           </clade>
4285                         </clade>
4286                         <clade>
4287                           <name>a_22</name>
4288                           <taxonomy>
4289                             <id provider="uniprot">2239</id>
4290                             <scientific_name>Halobacterium</scientific_name>
4291                             <rank>genus</rank>
4292                           </taxonomy>
4293                           <clade>
4294                             <name>HALS3</name>
4295                             <taxonomy>
4296                               <id provider="uniprot">478009</id>
4297                               <code>HALS3</code>
4298                               <scientific_name>Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)</scientific_name>
4299                             </taxonomy>
4300                           </clade>
4301                           <clade>
4302                             <name>HALSP</name>
4303                             <taxonomy>
4304                               <id provider="uniprot">2243</id>
4305                               <code>HALSP</code>
4306                               <scientific_name>Halobacterium sp.</scientific_name>
4307                               <rank>species</rank>
4308                             </taxonomy>
4309                           </clade>
4310                         </clade>
4311                       </clade>
4312                       <clade>
4313                         <name>HALWD</name>
4314                         <taxonomy>
4315                           <id provider="uniprot">362976</id>
4316                           <code>HALWD</code>
4317                           <scientific_name>Haloquadratum walsbyi (strain DSM 16790)</scientific_name>
4318                         </taxonomy>
4319                       </clade>
4320                     </clade>
4321                   </clade>
4322                   <clade>
4323                     <name>ARCFU</name>
4324                     <taxonomy>
4325                       <id provider="uniprot">2234</id>
4326                       <code>ARCFU</code>
4327                       <scientific_name>Archaeoglobus fulgidus</scientific_name>
4328                       <rank>species</rank>
4329                     </taxonomy>
4330                   </clade>
4331                 </clade>
4332                 <clade>
4333                   <name>a_43</name>
4334                   <clade>
4335                     <name>a_41</name>
4336                     <clade>
4337                       <name>a_35</name>
4338                       <taxonomy>
4339                         <id provider="uniprot">2182</id>
4340                         <scientific_name>Methanococcales</scientific_name>
4341                         <rank>order</rank>
4342                       </taxonomy>
4343                       <clade>
4344                         <name>a_31</name>
4345                         <clade>
4346                           <name>METJA</name>
4347                           <taxonomy>
4348                             <id provider="uniprot">2190</id>
4349                             <code>METJA</code>
4350                             <scientific_name>Methanocaldococcus jannaschii</scientific_name>
4351                             <synonym>Methanococcus jannaschii</synonym>
4352                             <rank>species</rank>
4353                           </taxonomy>
4354                         </clade>
4355                         <clade>
4356                           <name>META3</name>
4357                           <taxonomy>
4358                             <id provider="uniprot">419665</id>
4359                             <code>META3</code>
4360                             <scientific_name>Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280)</scientific_name>
4361                           </taxonomy>
4362                         </clade>
4363                       </clade>
4364                       <clade>
4365                         <name>a_34</name>
4366                         <taxonomy>
4367                           <id provider="uniprot">2184</id>
4368                           <scientific_name>Methanococcus</scientific_name>
4369                           <rank>genus</rank>
4370                         </taxonomy>
4371                         <clade>
4372                           <name>METMP</name>
4373                           <taxonomy>
4374                             <id provider="uniprot">39152</id>
4375                             <code>METMP</code>
4376                             <scientific_name>Methanococcus maripaludis</scientific_name>
4377                             <synonym>Methanococcus deltae</synonym>
4378                             <rank>species</rank>
4379                           </taxonomy>
4380                         </clade>
4381                         <clade>
4382                           <name>METVS</name>
4383                           <taxonomy>
4384                             <id provider="uniprot">406327</id>
4385                             <code>METVS</code>
4386                             <scientific_name>Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224)</scientific_name>
4387                           </taxonomy>
4388                         </clade>
4389                       </clade>
4390                     </clade>
4391                     <clade>
4392                       <name>a_40</name>
4393                       <taxonomy>
4394                         <id provider="uniprot">2159</id>
4395                         <scientific_name>Methanobacteriaceae</scientific_name>
4396                         <rank>family</rank>
4397                       </taxonomy>
4398                       <clade>
4399                         <name>a_38</name>
4400                         <clade>
4401                           <name>METS3</name>
4402                           <taxonomy>
4403                             <id provider="uniprot">420247</id>
4404                             <code>METS3</code>
4405                             <scientific_name>Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861)</scientific_name>
4406                           </taxonomy>
4407                         </clade>
4408                         <clade>
4409                           <name>METST</name>
4410                           <taxonomy>
4411                             <id provider="uniprot">339860</id>
4412                             <code>METST</code>
4413                             <scientific_name>Methanosphaera stadtmanae (strain DSM 3091)</scientific_name>
4414                           </taxonomy>
4415                         </clade>
4416                       </clade>
4417                       <clade>
4418                         <name>METTH</name>
4419                         <taxonomy>
4420                           <id provider="uniprot">187420</id>
4421                           <code>METTH</code>
4422                           <scientific_name>Methanobacterium thermoautotrophicum</scientific_name>
4423                         </taxonomy>
4424                       </clade>
4425                     </clade>
4426                   </clade>
4427                   <clade>
4428                     <name>METKA</name>
4429                     <taxonomy>
4430                       <id provider="uniprot">2320</id>
4431                       <code>METKA</code>
4432                       <scientific_name>Methanopyrus kandleri</scientific_name>
4433                       <rank>species</rank>
4434                     </taxonomy>
4435                   </clade>
4436                 </clade>
4437               </clade>
4438               <clade>
4439                 <name>a_51</name>
4440                 <taxonomy>
4441                   <id provider="uniprot">2259</id>
4442                   <scientific_name>Thermococcaceae</scientific_name>
4443                   <rank>family</rank>
4444                 </taxonomy>
4445                 <clade>
4446                   <name>a_47</name>
4447                   <clade>
4448                     <name>PYRFU</name>
4449                     <taxonomy>
4450                       <id provider="uniprot">2261</id>
4451                       <code>PYRFU</code>
4452                       <scientific_name>Pyrococcus furiosus</scientific_name>
4453                       <rank>species</rank>
4454                     </taxonomy>
4455                   </clade>
4456                   <clade>
4457                     <taxonomy>
4458                       <id provider="uniprot">69014</id>
4459                       <code>PYRKO</code>
4460                       <scientific_name>Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)</scientific_name>
4461                       <synonym>Thermococcus kodakaraensis (strain KOD1)</synonym>
4462                     </taxonomy>
4463                   </clade>
4464                 </clade>
4465                 <clade>
4466                   <name>a_50</name>
4467                   <taxonomy>
4468                     <id provider="uniprot">2260</id>
4469                     <scientific_name>Pyrococcus</scientific_name>
4470                     <rank>genus</rank>
4471                   </taxonomy>
4472                   <clade>
4473                     <name>PYRAB</name>
4474                     <taxonomy>
4475                       <id provider="uniprot">29292</id>
4476                       <code>PYRAB</code>
4477                       <scientific_name>Pyrococcus abyssi</scientific_name>
4478                       <rank>species</rank>
4479                     </taxonomy>
4480                   </clade>
4481                   <clade>
4482                     <name>PYRHO</name>
4483                     <taxonomy>
4484                       <id provider="uniprot">53953</id>
4485                       <code>PYRHO</code>
4486                       <scientific_name>Pyrococcus horikoshii</scientific_name>
4487                       <rank>species</rank>
4488                     </taxonomy>
4489                   </clade>
4490                 </clade>
4491               </clade>
4492             </clade>
4493             <clade>
4494               <name>a_55</name>
4495               <clade>
4496                 <name>NANEQ</name>
4497                 <taxonomy>
4498                   <id provider="uniprot">228908</id>
4499                   <code>NANEQ</code>
4500                   <scientific_name>Nanoarchaeum equitans (strain Kin4-M)</scientific_name>
4501                 </taxonomy>
4502               </clade>
4503               <clade>
4504                 <taxonomy>
4505                   <id provider="uniprot">436308</id>
4506                   <code>NITMS</code>
4507                   <scientific_name>Nitrosopumilus maritimus (strain SCM1)</scientific_name>
4508                 </taxonomy>
4509               </clade>
4510             </clade>
4511           </clade>
4512           <clade>
4513             <taxonomy>
4514               <id provider="uniprot">2301</id>
4515               <scientific_name>Thermoplasmatales</scientific_name>
4516               <rank>order</rank>
4517             </taxonomy>
4518             <clade>
4519               <name>a_59</name>
4520               <taxonomy>
4521                 <id provider="uniprot">2302</id>
4522                 <scientific_name>Thermoplasma</scientific_name>
4523                 <rank>genus</rank>
4524               </taxonomy>
4525               <clade>
4526                 <name>THEAC</name>
4527                 <taxonomy>
4528                   <id provider="uniprot">273075</id>
4529                   <code>THEAC</code>
4530                   <scientific_name>Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)</scientific_name>
4531                 </taxonomy>
4532               </clade>
4533               <clade>
4534                 <name>THEVO</name>
4535                 <taxonomy>
4536                   <id provider="uniprot">273116</id>
4537                   <code>THEVO</code>
4538                   <scientific_name>Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / IFO 15438 / JCM 9571 / GSS1)</scientific_name>
4539                 </taxonomy>
4540               </clade>
4541             </clade>
4542             <clade>
4543               <name>PICTO</name>
4544               <taxonomy>
4545                 <id provider="uniprot">263820</id>
4546                 <code>PICTO</code>
4547                 <scientific_name>Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)</scientific_name>
4548               </taxonomy>
4549             </clade>
4550           </clade>
4551         </clade>
4552         <clade>
4553           <name>a_93</name>
4554           <clade>
4555             <taxonomy>
4556               <id provider="uniprot">183924</id>
4557               <scientific_name>Thermoprotei</scientific_name>
4558               <rank>class</rank>
4559             </taxonomy>
4560             <clade>
4561               <name>a_83</name>
4562               <clade>
4563                 <name>a_81</name>
4564                 <clade>
4565                   <name>a_73</name>
4566                   <taxonomy>
4567                     <id provider="uniprot">2267</id>
4568                     <scientific_name>Thermoproteaceae</scientific_name>
4569                     <rank>family</rank>
4570                   </taxonomy>
4571                   <clade>
4572                     <name>a_71</name>
4573                     <clade>
4574                       <name>a_67</name>
4575                       <taxonomy>
4576                         <id provider="uniprot">2276</id>
4577                         <scientific_name>Pyrobaculum</scientific_name>
4578                         <rank>genus</rank>
4579                       </taxonomy>
4580                       <clade>
4581                         <name>a_65</name>
4582                         <clade>
4583                           <name>PYRAR</name>
4584                           <taxonomy>
4585                             <id provider="uniprot">340102</id>
4586                             <code>PYRAR</code>
4587                             <scientific_name>Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321)</scientific_name>
4588                           </taxonomy>
4589                         </clade>
4590                         <clade>
4591                           <name>PYRCJ</name>
4592                           <taxonomy>
4593                             <id provider="uniprot">410359</id>
4594                             <code>PYRCJ</code>
4595                             <scientific_name>Pyrobaculum calidifontis (strain JCM 11548 / VA1)</scientific_name>
4596                           </taxonomy>
4597                         </clade>
4598                       </clade>
4599                       <clade>
4600                         <name>PYRAE</name>
4601                         <taxonomy>
4602                           <id provider="uniprot">13773</id>
4603                           <code>PYRAE</code>
4604                           <scientific_name>Pyrobaculum aerophilum</scientific_name>
4605                           <rank>species</rank>
4606                         </taxonomy>
4607                       </clade>
4608                     </clade>
4609                     <clade>
4610                       <name>a_70</name>
4611                       <clade>
4612                         <name>PYRIL</name>
4613                         <taxonomy>
4614                           <id provider="uniprot">384616</id>
4615                           <code>PYRIL</code>
4616                           <scientific_name>Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)</scientific_name>
4617                         </taxonomy>
4618                       </clade>
4619                       <clade>
4620                         <name>THENV</name>
4621                         <taxonomy>
4622                           <id provider="uniprot">444157</id>
4623                           <code>THENV</code>
4624                           <scientific_name>Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta)</scientific_name>
4625                         </taxonomy>
4626                       </clade>
4627                     </clade>
4628                   </clade>
4629                   <clade>
4630                     <taxonomy>
4631                       <id provider="uniprot">397948</id>
4632                       <code>CALMQ</code>
4633                       <scientific_name>Caldivirga maquilingensis (strain ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)</scientific_name>
4634                     </taxonomy>
4635                   </clade>
4636                 </clade>
4637                 <clade>
4638                   <name>a_80</name>
4639                   <taxonomy>
4640                     <id provider="uniprot">118883</id>
4641                     <scientific_name>Sulfolobaceae</scientific_name>
4642                     <rank>family</rank>
4643                   </taxonomy>
4644                   <clade>
4645                     <name>a_78</name>
4646                     <taxonomy>
4647                       <id provider="uniprot">2284</id>
4648                       <scientific_name>Sulfolobus</scientific_name>
4649                       <rank>genus</rank>
4650                     </taxonomy>
4651                     <clade>
4652                       <name>a_76</name>
4653                       <clade>
4654                         <name>SULAC</name>
4655                         <taxonomy>
4656                           <id provider="uniprot">2285</id>
4657                           <code>SULAC</code>
4658                           <scientific_name>Sulfolobus acidocaldarius</scientific_name>
4659                           <rank>species</rank>
4660                         </taxonomy>
4661                       </clade>
4662                       <clade>
4663                         <name>SULTO</name>
4664                         <taxonomy>
4665                           <id provider="uniprot">273063</id>
4666                           <code>SULTO</code>
4667                           <scientific_name>Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)</scientific_name>
4668                         </taxonomy>
4669                       </clade>
4670                     </clade>
4671                     <clade>
4672                       <name>SULSO</name>
4673                       <taxonomy>
4674                         <id provider="uniprot">2287</id>
4675                         <code>SULSO</code>
4676                         <scientific_name>Sulfolobus solfataricus</scientific_name>
4677                         <rank>species</rank>
4678                       </taxonomy>
4679                     </clade>
4680                   </clade>
4681                   <clade>
4682                     <name>METS5</name>
4683                     <taxonomy>
4684                       <id provider="uniprot">399549</id>
4685                       <code>METS5</code>
4686                       <scientific_name>Metallosphaera sedula (strain ATCC 51363 / DSM 5348)</scientific_name>
4687                     </taxonomy>
4688                   </clade>
4689                 </clade>
4690               </clade>
4691               <clade>
4692                 <name>AERPE</name>
4693                 <taxonomy>
4694                   <id provider="uniprot">56636</id>
4695                   <code>AERPE</code>
4696                   <scientific_name>Aeropyrum pernix</scientific_name>
4697                   <rank>species</rank>
4698                 </taxonomy>
4699               </clade>
4700             </clade>
4701             <clade>
4702               <name>a_90</name>
4703               <clade>
4704                 <name>a_88</name>
4705                 <clade>
4706                   <name>a_86</name>
4707                   <clade>
4708                     <name>STAMF</name>
4709                     <taxonomy>
4710                       <id provider="uniprot">399550</id>
4711                       <code>STAMF</code>
4712                       <scientific_name>Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1)</scientific_name>
4713                     </taxonomy>
4714                   </clade>
4715                   <clade>
4716                     <name>THEPD</name>
4717                     <taxonomy>
4718                       <id provider="uniprot">368408</id>
4719                       <code>THEPD</code>
4720                       <scientific_name>Thermofilum pendens (strain Hrk 5)</scientific_name>
4721                     </taxonomy>
4722                   </clade>
4723                 </clade>
4724                 <clade>
4725                   <name>HYPBU</name>
4726                   <taxonomy>
4727                     <id provider="uniprot">415426</id>
4728                     <code>HYPBU</code>
4729                     <scientific_name>Hyperthermus butylicus (strain DSM 5456 / JCM 9403)</scientific_name>
4730                   </taxonomy>
4731                 </clade>
4732               </clade>
4733               <clade>
4734                 <name>IGNH4</name>
4735                 <taxonomy>
4736                   <id provider="uniprot">453591</id>
4737                   <code>IGNH4</code>
4738                   <scientific_name>Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)</scientific_name>
4739                 </taxonomy>
4740               </clade>
4741             </clade>
4742           </clade>
4743           <clade>
4744             <taxonomy>
4745               <id provider="uniprot">374847</id>
4746               <code>KORCO</code>
4747               <scientific_name>Korarchaeum cryptofilum (strain OPF8)</scientific_name>
4748             </taxonomy>
4749           </clade>
4750         </clade>
4751       </clade>
4752     </clade>
4753     <clade>
4754       <taxonomy>
4755         <id provider="uniprot">2</id>
4756         <scientific_name>Bacteria</scientific_name>
4757         <rank>superkingdom</rank>
4758       </taxonomy>
4759       <clade>
4760         <name>b_278</name>
4761         <clade>
4762           <name>b_268</name>
4763           <clade>
4764             <name>b_226</name>
4765             <clade>
4766               <name>b_200</name>
4767               <clade>
4768                 <name>b_194</name>
4769                 <clade>
4770                   <name>b_104</name>
4771                   <clade>
4772                     <name>b_80</name>
4773                     <clade>
4774                       <taxonomy>
4775                         <id provider="uniprot">1224</id>
4776                         <scientific_name>Proteobacteria</scientific_name>
4777                         <rank>phylum</rank>
4778                       </taxonomy>
4779                       <clade>
4780                         <name>b_52</name>
4781                         <clade>
4782                           <name>b_44</name>
4783                           <clade>
4784                             <name>b_30</name>
4785                             <clade>
4786                               <name>b_24</name>
4787                               <taxonomy>
4788                                 <id provider="uniprot">1236</id>
4789                                 <scientific_name>Gammaproteobacteria</scientific_name>
4790                                 <rank>class</rank>
4791                               </taxonomy>
4792                               <clade>
4793                                 <name>b_16</name>
4794                                 <clade>
4795                                   <name>b_10</name>
4796                                   <taxonomy>
4797                                     <id provider="uniprot">543</id>
4798                                     <scientific_name>Enterobacteriaceae</scientific_name>
4799                                     <rank>family</rank>
4800                                   </taxonomy>
4801                                   <clade>
4802                                     <name>b_8</name>
4803                                     <clade>
4804                                       <name>b_6</name>
4805                                       <clade>
4806                                         <name>b_4</name>
4807                                         <clade>
4808                                           <name>b_2</name>
4809                                           <taxonomy>
4810                                             <id provider="uniprot">561</id>
4811                                             <scientific_name>Escherichia</scientific_name>
4812                                             <rank>genus</rank>
4813                                           </taxonomy>
4814                                           <clade>
4815                                             <name>ECOLI</name>
4816                                             <taxonomy>
4817                                               <id provider="uniprot">83333</id>
4818                                               <code>ECOLI</code>
4819                                               <scientific_name>Escherichia coli (strain K12)</scientific_name>
4820                                             </taxonomy>
4821                                           </clade>
4822                                           <clade>
4823                                             <name>ECO57</name>
4824                                             <taxonomy>
4825                                               <id provider="uniprot">83334</id>
4826                                               <code>ECO57</code>
4827                                               <scientific_name>Escherichia coli O157:H7</scientific_name>
4828                                             </taxonomy>
4829                                           </clade>
4830                                         </clade>
4831                                         <clade>
4832                                           <name>SHIFL</name>
4833                                           <taxonomy>
4834                                             <id provider="uniprot">623</id>
4835                                             <code>SHIFL</code>
4836                                             <scientific_name>Shigella flexneri</scientific_name>
4837                                             <rank>species</rank>
4838                                           </taxonomy>
4839                                         </clade>
4840                                       </clade>
4841                                       <clade>
4842                                         <name>SALTY</name>
4843                                         <taxonomy>
4844                                           <id provider="uniprot">90371</id>
4845                                           <code>SALTY</code>
4846                                           <scientific_name>Salmonella typhimurium</scientific_name>
4847                                         </taxonomy>
4848                                       </clade>
4849                                     </clade>
4850                                     <clade>
4851                                       <name>YERPE</name>
4852                                       <taxonomy>
4853                                         <id provider="uniprot">632</id>
4854                                         <code>YERPE</code>
4855                                         <scientific_name>Yersinia pestis</scientific_name>
4856                                         <rank>species</rank>
4857                                       </taxonomy>
4858                                     </clade>
4859                                   </clade>
4860                                   <clade>
4861                                     <name>PHOLU</name>
4862                                     <taxonomy>
4863                                       <id provider="uniprot">29488</id>
4864                                       <code>PHOLU</code>
4865                                       <scientific_name>Photorhabdus luminescens</scientific_name>
4866                                       <synonym>Xenorhabdus luminescens</synonym>
4867                                       <rank>species</rank>
4868                                     </taxonomy>
4869                                   </clade>
4870                                 </clade>
4871                                 <clade>
4872                                   <name>b_15</name>
4873                                   <clade>
4874                                     <name>b_13</name>
4875                                     <taxonomy>
4876                                       <id provider="uniprot">641</id>
4877                                       <scientific_name>Vibrionaceae</scientific_name>
4878                                       <rank>family</rank>
4879                                     </taxonomy>
4880                                     <clade>
4881                                       <name>PHOPR</name>
4882                                       <taxonomy>
4883                                         <id provider="uniprot">74109</id>
4884                                         <code>PHOPR</code>
4885                                         <scientific_name>Photobacterium profundum</scientific_name>
4886                                         <synonym>Photobacterium sp. (strain SS9)</synonym>
4887                                         <rank>species</rank>
4888                                       </taxonomy>
4889                                     </clade>
4890                                     <clade>
4891                                       <name>VIBCH</name>
4892                                       <taxonomy>
4893                                         <id provider="uniprot">666</id>
4894                                         <code>VIBCH</code>
4895                                         <scientific_name>Vibrio cholerae</scientific_name>
4896                                         <rank>species</rank>
4897                                       </taxonomy>
4898                                     </clade>
4899                                   </clade>
4900                                   <clade>
4901                                     <name>SHEDO</name>
4902                                     <taxonomy>
4903                                       <id provider="uniprot">318161</id>
4904                                       <code>SHEDO</code>
4905                                       <scientific_name>Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)</scientific_name>
4906                                     </taxonomy>
4907                                   </clade>
4908                                 </clade>
4909                               </clade>
4910                               <clade>
4911                                 <name>b_23</name>
4912                                 <clade>
4913                                   <name>b_21</name>
4914                                   <taxonomy>
4915                                     <id provider="uniprot">286</id>
4916                                     <scientific_name>Pseudomonas</scientific_name>
4917                                     <rank>genus</rank>
4918                                   </taxonomy>
4919                                   <clade>
4920                                     <name>b_19</name>
4921                                     <clade>
4922                                       <name>PSEF5</name>
4923                                       <taxonomy>
4924                                         <id provider="uniprot">220664</id>
4925                                         <code>PSEF5</code>
4926                                         <scientific_name>Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)</scientific_name>
4927                                       </taxonomy>
4928                                     </clade>
4929                                     <clade>
4930                                       <name>PSEPF</name>
4931                                       <taxonomy>
4932                                         <id provider="uniprot">205922</id>
4933                                         <code>PSEPF</code>
4934                                         <scientific_name>Pseudomonas fluorescens (strain Pf0-1)</scientific_name>
4935                                       </taxonomy>
4936                                     </clade>
4937                                   </clade>
4938                                   <clade>
4939                                     <name>PSEAE</name>
4940                                     <taxonomy>
4941                                       <id provider="uniprot">287</id>
4942                                       <code>PSEAE</code>
4943                                       <scientific_name>Pseudomonas aeruginosa</scientific_name>
4944                                       <rank>species</rank>
4945                                     </taxonomy>
4946                                   </clade>
4947                                 </clade>
4948                                 <clade>
4949                                   <name>CHRSD</name>
4950                                   <taxonomy>
4951                                     <id provider="uniprot">290398</id>
4952                                     <code>CHRSD</code>
4953                                     <scientific_name>Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)</scientific_name>
4954                                   </taxonomy>
4955                                 </clade>
4956                               </clade>
4957                             </clade>
4958                             <clade>
4959                               <name>b_29</name>
4960                               <taxonomy>
4961                                 <id provider="uniprot">28216</id>
4962                                 <scientific_name>Betaproteobacteria</scientific_name>
4963                                 <rank>class</rank>
4964                               </taxonomy>
4965                               <clade>
4966                                 <name>DECAR</name>
4967                                 <taxonomy>
4968                                   <id provider="uniprot">159087</id>
4969                                   <code>DECAR</code>
4970                                   <scientific_name>Dechloromonas aromatica (strain RCB)</scientific_name>
4971                                 </taxonomy>
4972                               </clade>
4973                               <clade>
4974                                 <name>RALME</name>
4975                                 <taxonomy>
4976                                   <id provider="uniprot">266264</id>
4977                                   <code>RALME</code>
4978                                   <scientific_name>Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839)</scientific_name>
4979                                 </taxonomy>
4980                               </clade>
4981                             </clade>
4982                           </clade>
4983                           <clade>
4984                             <name>b_43</name>
4985                             <clade>
4986                               <name>b_41</name>
4987                               <clade>
4988                                 <name>b_35</name>
4989                                 <taxonomy>
4990                                   <id provider="uniprot">28216</id>
4991                                   <scientific_name>Betaproteobacteria</scientific_name>
4992                                   <rank>class</rank>
4993                                 </taxonomy>
4994                                 <clade>
4995                                   <name>b_33</name>
4996                                   <taxonomy>
4997                                     <id provider="uniprot">206379</id>
4998                                     <scientific_name>Nitrosomonadaceae</scientific_name>
4999                                     <rank>family</rank>
5000                                   </taxonomy>
5001                                   <clade>
5002                                     <name>NITEU</name>
5003                                     <taxonomy>
5004                                       <id provider="uniprot">915</id>
5005                                       <code>NITEU</code>
5006                                       <scientific_name>Nitrosomonas europaea</scientific_name>
5007                                       <rank>species</rank>
5008                                     </taxonomy>
5009                                   </clade>
5010                                   <clade>
5011                                     <name>NITMU</name>
5012                                     <taxonomy>
5013                                       <id provider="uniprot">323848</id>
5014                                       <code>NITMU</code>
5015                                       <scientific_name>Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849)</scientific_name>
5016                                     </taxonomy>
5017                                   </clade>
5018                                 </clade>
5019                                 <clade>
5020                                   <name>THIDE</name>
5021                                   <taxonomy>
5022                                     <id provider="uniprot">36861</id>
5023                                     <code>THIDE</code>
5024                                     <scientific_name>Thiobacillus denitrificans</scientific_name>
5025                                     <rank>species</rank>
5026                                   </taxonomy>
5027                                 </clade>
5028                               </clade>
5029                               <clade>
5030                                 <name>b_40</name>
5031                                 <taxonomy>
5032                                   <id provider="uniprot">135613</id>
5033                                   <scientific_name>Chromatiales</scientific_name>
5034                                   <rank>order</rank>
5035                                 </taxonomy>
5036                                 <clade>
5037                                   <name>b_38</name>
5038                                   <taxonomy>
5039                                     <id provider="uniprot">72276</id>
5040                                     <scientific_name>Ectothiorhodospiraceae</scientific_name>
5041                                     <common_name>purple sulfur bacteria</common_name>
5042                                     <rank>family</rank>
5043                                   </taxonomy>
5044                                   <clade>
5045                                     <name>ALHEH</name>
5046                                     <taxonomy>
5047                                       <id provider="uniprot">187272</id>
5048                                       <code>ALHEH</code>
5049                                       <scientific_name>Alkalilimnicola ehrlichei (strain MLHE-1)</scientific_name>
5050                                     </taxonomy>
5051                                   </clade>
5052                                   <clade>
5053                                     <name>HALHL</name>
5054                                     <taxonomy>
5055                                       <id provider="uniprot">349124</id>
5056                                       <code>HALHL</code>
5057                                       <scientific_name>Halorhodospira halophila (strain DSM 244 / SL1)</scientific_name>
5058                                       <synonym>Ectothiorhodospira halophila (strain DSM 244 / SL1)</synonym>
5059                                     </taxonomy>
5060                                   </clade>
5061                                 </clade>
5062                                 <clade>
5063                                   <name>NITOC</name>
5064                                   <taxonomy>
5065                                     <id provider="uniprot">323261</id>
5066                                     <code>NITOC</code>
5067                                     <scientific_name>Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)</scientific_name>
5068                                   </taxonomy>
5069                                 </clade>
5070                               </clade>
5071                             </clade>
5072                             <clade>
5073                               <name>THICR</name>
5074                               <taxonomy>
5075                                 <id provider="uniprot">317025</id>
5076                                 <code>THICR</code>
5077                                 <scientific_name>Thiomicrospira crunogena (strain XCL-2)</scientific_name>
5078                               </taxonomy>
5079                             </clade>
5080                           </clade>
5081                         </clade>
5082                         <clade>
5083                           <name>b_51</name>
5084                           <taxonomy>
5085                             <id provider="uniprot">1236</id>
5086                             <scientific_name>Gammaproteobacteria</scientific_name>
5087                             <rank>class</rank>
5088                           </taxonomy>
5089                           <clade>
5090                             <name>b_47</name>
5091                             <clade>
5092                               <name>IDILO</name>
5093                               <taxonomy>
5094                                 <id provider="uniprot">135577</id>
5095                                 <code>IDILO</code>
5096                                 <scientific_name>Idiomarina loihiensis</scientific_name>
5097                                 <rank>species</rank>
5098                               </taxonomy>
5099                             </clade>
5100                             <clade>
5101                               <name>LEGPN</name>
5102                               <taxonomy>
5103                                 <id provider="uniprot">446</id>
5104                                 <code>LEGPN</code>
5105                                 <scientific_name>Legionella pneumophila</scientific_name>
5106                                 <rank>species</rank>
5107                               </taxonomy>
5108                             </clade>
5109                           </clade>
5110                           <clade>
5111                             <name>b_50</name>
5112                             <taxonomy>
5113                               <id provider="uniprot">32033</id>
5114                               <scientific_name>Xanthomonadaceae</scientific_name>
5115                               <rank>family</rank>
5116                             </taxonomy>
5117                             <clade>
5118                               <name>XANAC</name>
5119                               <taxonomy>
5120                                 <id provider="uniprot">92829</id>
5121                                 <code>XANAC</code>
5122                                 <scientific_name>Xanthomonas axonopodis pv. citri</scientific_name>
5123                                 <common_name>Citrus canker</common_name>
5124                               </taxonomy>
5125                             </clade>
5126                             <clade>
5127                               <name>XYLFT</name>
5128                               <taxonomy>
5129                                 <id provider="uniprot">183190</id>
5130                                 <code>XYLFT</code>
5131                                 <scientific_name>Xylella fastidiosa (strain Temecula1 / ATCC 700964)</scientific_name>
5132                               </taxonomy>
5133                             </clade>
5134                           </clade>
5135                         </clade>
5136                       </clade>
5137                       <clade>
5138                         <name>b_71</name>
5139                         <taxonomy>
5140                           <id provider="uniprot">28211</id>
5141                           <scientific_name>Alphaproteobacteria</scientific_name>
5142                           <rank>class</rank>
5143                         </taxonomy>
5144                         <clade>
5145                           <name>b_67</name>
5146                           <clade>
5147                             <name>b_65</name>
5148                             <clade>
5149                               <name>b_61</name>
5150                               <taxonomy>
5151                                 <id provider="uniprot">356</id>
5152                                 <scientific_name>Rhizobiales</scientific_name>
5153                                 <rank>order</rank>
5154                               </taxonomy>
5155                               <clade>
5156                                 <name>b_57</name>
5157                                 <taxonomy>
5158                                   <id provider="uniprot">227290</id>
5159                                   <scientific_name>Rhizobium/Agrobacterium group</scientific_name>
5160                                 </taxonomy>
5161                                 <clade>
5162                                   <name>AGRT5</name>
5163                                   <taxonomy>
5164                                     <id provider="uniprot">176299</id>
5165                                     <code>AGRT5</code>
5166                                     <scientific_name>Agrobacterium tumefaciens (strain C58 / ATCC 33970)</scientific_name>
5167                                   </taxonomy>
5168                                 </clade>
5169                                 <clade>
5170                                   <name>RHIEC</name>
5171                                   <taxonomy>
5172                                     <id provider="uniprot">347834</id>
5173                                     <code>RHIEC</code>
5174                                     <scientific_name>Rhizobium etli (strain CFN 42 / ATCC 51251)</scientific_name>
5175                                   </taxonomy>
5176                                 </clade>
5177                               </clade>
5178                               <clade>
5179                                 <name>b_60</name>
5180                                 <taxonomy>
5181                                   <id provider="uniprot">41294</id>
5182                                   <scientific_name>Bradyrhizobiaceae</scientific_name>
5183                                   <rank>family</rank>
5184                                 </taxonomy>
5185                                 <clade>
5186                                   <name>BRAJA</name>
5187                                   <taxonomy>
5188                                     <id provider="uniprot">375</id>
5189                                     <code>BRAJA</code>
5190                                     <scientific_name>Bradyrhizobium japonicum</scientific_name>
5191                                     <rank>species</rank>
5192                                   </taxonomy>
5193                                 </clade>
5194                                 <clade>
5195                                   <name>RHOPT</name>
5196                                   <taxonomy>
5197                                     <id provider="uniprot">395960</id>
5198                                     <code>RHOPT</code>
5199                                     <scientific_name>Rhodopseudomonas palustris (strain TIE-1)</scientific_name>
5200                                   </taxonomy>
5201                                 </clade>
5202                               </clade>
5203                             </clade>
5204                             <clade>
5205                               <name>b_64</name>
5206                               <taxonomy>
5207                                 <id provider="uniprot">31989</id>
5208                                 <scientific_name>Rhodobacteraceae</scientific_name>
5209                                 <rank>family</rank>
5210                               </taxonomy>
5211                               <clade>
5212                                 <name>RHOS1</name>
5213                                 <taxonomy>
5214                                   <id provider="uniprot">349101</id>
5215                                   <code>RHOS1</code>
5216                                   <scientific_name>Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)</scientific_name>
5217                                 </taxonomy>
5218                               </clade>
5219                               <clade>
5220                                 <name>ROSDO</name>
5221                                 <taxonomy>
5222                                   <id provider="uniprot">375451</id>
5223                                   <code>ROSDO</code>
5224                                   <scientific_name>Roseobacter denitrificans (strain ATCC 33942 / OCh 114)</scientific_name>
5225                                   <common_name>Erythrobacter sp. (strain OCh 114)</common_name>
5226                                   <synonym>Roseobacter denitrificans</synonym>
5227                                 </taxonomy>
5228                               </clade>
5229                             </clade>
5230                           </clade>
5231                           <clade>
5232                             <name>CAUCR</name>
5233                             <taxonomy>
5234                               <id provider="uniprot">155892</id>
5235                               <code>CAUCR</code>
5236                               <scientific_name>Caulobacter crescentus</scientific_name>
5237                               <synonym>Caulobacter vibrioides</synonym>
5238                               <rank>species</rank>
5239                             </taxonomy>
5240                           </clade>
5241                         </clade>
5242                         <clade>
5243                           <name>b_70</name>
5244                           <taxonomy>
5245                             <id provider="uniprot">204441</id>
5246                             <scientific_name>Rhodospirillales</scientific_name>
5247                             <rank>order</rank>
5248                           </taxonomy>
5249                           <clade>
5250                             <name>ACICY</name>
5251                             <taxonomy>
5252                               <id provider="uniprot">524</id>
5253                               <code>ACICY</code>
5254                               <scientific_name>Acidiphilium cryptum</scientific_name>
5255                               <rank>species</rank>
5256                             </taxonomy>
5257                           </clade>
5258                           <clade>
5259                             <name>RHORU</name>
5260                             <taxonomy>
5261                               <id provider="uniprot">1085</id>
5262                               <code>RHORU</code>
5263                               <scientific_name>Rhodospirillum rubrum</scientific_name>
5264                               <rank>species</rank>
5265                             </taxonomy>
5266                           </clade>
5267                         </clade>
5268                       </clade>
5269                     </clade>
5270                     <clade>
5271                       <name>b_79</name>
5272                       <clade>
5273                         <name>b_77</name>
5274                         <taxonomy>
5275                           <id provider="uniprot">1224</id>
5276                           <scientific_name>Proteobacteria</scientific_name>
5277                           <rank>phylum</rank>
5278                         </taxonomy>
5279                         <clade>
5280                           <name>b_75</name>
5281                           <taxonomy>
5282                             <id provider="uniprot">712</id>
5283                             <scientific_name>Pasteurellaceae</scientific_name>
5284                             <rank>family</rank>
5285                           </taxonomy>
5286                           <clade>
5287                             <name>HAEIN</name>
5288                             <taxonomy>
5289                               <id provider="uniprot">727</id>
5290                               <code>HAEIN</code>
5291                               <scientific_name>Haemophilus influenzae</scientific_name>
5292                               <rank>species</rank>
5293                             </taxonomy>
5294                           </clade>
5295                           <clade>
5296                             <name>PASMU</name>
5297                             <taxonomy>
5298                               <id provider="uniprot">747</id>
5299                               <code>PASMU</code>
5300                               <scientific_name>Pasteurella multocida</scientific_name>
5301                               <rank>species</rank>
5302                             </taxonomy>
5303                           </clade>
5304                         </clade>
5305                         <clade>
5306                           <name>NEIME</name>
5307                           <taxonomy>
5308                             <id provider="uniprot">487</id>
5309                             <code>NEIME</code>
5310                             <scientific_name>Neisseria meningitidis</scientific_name>
5311                             <rank>species</rank>
5312                           </taxonomy>
5313                         </clade>
5314                       </clade>
5315                       <clade>
5316                         <name>ACIFE</name>
5317                         <taxonomy>
5318                           <id provider="uniprot">905</id>
5319                           <code>ACIFE</code>
5320                           <scientific_name>Acidaminococcus fermentans</scientific_name>
5321                           <rank>species</rank>
5322                         </taxonomy>
5323                       </clade>
5324                     </clade>
5325                   </clade>
5326                   <clade>
5327                     <name>b_103</name>
5328                     <clade>
5329                       <name>b_91</name>
5330                       <taxonomy>
5331                         <id provider="uniprot">28221</id>
5332                         <scientific_name>Deltaproteobacteria</scientific_name>
5333                         <rank>class</rank>
5334                       </taxonomy>
5335                       <clade>
5336                         <name>b_87</name>
5337                         <clade>
5338                           <name>b_83</name>
5339                           <clade>
5340                             <name>DESPS</name>
5341                             <taxonomy>
5342                               <id provider="uniprot">84980</id>
5343                               <code>DESPS</code>
5344                               <scientific_name>Desulfotalea psychrophila</scientific_name>
5345                               <rank>species</rank>
5346                             </taxonomy>
5347                           </clade>
5348                           <clade>
5349                             <name>DESDE</name>
5350                             <taxonomy>
5351                               <id provider="uniprot">876</id>
5352                               <code>DESDE</code>
5353                               <scientific_name>Desulfovibrio desulfuricans</scientific_name>
5354                               <rank>species</rank>
5355                             </taxonomy>
5356                           </clade>
5357                         </clade>
5358                         <clade>
5359                           <name>SYNAS</name>
5360                           <taxonomy>
5361                             <id provider="uniprot">56780</id>
5362                             <code>SYNAS</code>
5363                             <scientific_name>Syntrophus aciditrophicus (strain SB)</scientific_name>
5364                           </taxonomy>
5365                         </clade>
5366                       </clade>
5367                       <clade>
5368                         <name>b_90</name>
5369                         <taxonomy>
5370                           <id provider="uniprot">28231</id>
5371                           <scientific_name>Geobacter</scientific_name>
5372                           <rank>genus</rank>
5373                         </taxonomy>
5374                         <clade>
5375                           <name>GEOME</name>
5376                           <taxonomy>
5377                             <id provider="uniprot">28232</id>
5378                             <code>GEOME</code>
5379                             <scientific_name>Geobacter metallireducens</scientific_name>
5380                             <rank>species</rank>
5381                           </taxonomy>
5382                         </clade>
5383                         <clade>
5384                           <name>GEOSL</name>
5385                           <taxonomy>
5386                             <id provider="uniprot">35554</id>
5387                             <code>GEOSL</code>
5388                             <scientific_name>Geobacter sulfurreducens</scientific_name>
5389                             <rank>species</rank>
5390                           </taxonomy>
5391                         </clade>
5392                       </clade>
5393                     </clade>
5394                     <clade>
5395                       <name>b_102</name>
5396                       <clade>
5397                         <name>b_98</name>
5398                         <clade>
5399                           <name>b_94</name>
5400                           <taxonomy>
5401                             <id provider="uniprot">31</id>
5402                             <scientific_name>Myxococcaceae</scientific_name>
5403                             <rank>family</rank>
5404                           </taxonomy>
5405                           <clade>
5406                             <name>ANADE</name>
5407                             <taxonomy>
5408                               <id provider="uniprot">290397</id>
5409                               <code>ANADE</code>
5410                               <scientific_name>Anaeromyxobacter dehalogenans (strain 2CP-C)</scientific_name>
5411                             </taxonomy>
5412                           </clade>
5413                           <clade>
5414                             <name>MYXXA</name>
5415                             <taxonomy>
5416                               <id provider="uniprot">34</id>
5417                               <code>MYXXA</code>
5418                               <scientific_name>Myxococcus xanthus</scientific_name>
5419                               <rank>species</rank>
5420                             </taxonomy>
5421                           </clade>
5422                         </clade>
5423                         <clade>
5424                           <name>b_97</name>
5425                           <taxonomy>
5426                             <id provider="uniprot">57723</id>
5427                             <scientific_name>Acidobacteria</scientific_name>
5428                             <rank>phylum</rank>
5429                           </taxonomy>
5430                           <clade>
5431                             <name>ACIBL</name>
5432                             <taxonomy>
5433                               <id provider="uniprot">204669</id>
5434                               <code>ACIBL</code>
5435                               <scientific_name>Acidobacteria bacterium (strain Ellin345)</scientific_name>
5436                             </taxonomy>
5437                           </clade>
5438                           <clade>
5439                             <name>SOLUS</name>
5440                             <taxonomy>
5441                               <id provider="uniprot">332163</id>
5442                               <code>SOLUS</code>
5443                               <scientific_name>Solibacter usitatus</scientific_name>
5444                               <rank>species</rank>
5445                             </taxonomy>
5446                           </clade>
5447                         </clade>
5448                       </clade>
5449                       <clade>
5450                         <name>RHOBA</name>
5451                         <taxonomy>
5452                           <id provider="uniprot">265606</id>
5453                           <code>RHOBA</code>
5454                           <scientific_name>Rhodopirellula baltica</scientific_name>
5455                           <rank>species</rank>
5456                         </taxonomy>
5457                       </clade>
5458                     </clade>
5459                   </clade>
5460                 </clade>
5461                 <clade>
5462                   <name>b_193</name>
5463                   <clade>
5464                     <name>b_163</name>
5465                     <clade>
5466                       <name>b_133</name>
5467                       <clade>
5468                         <name>Chloroflexi &amp; Actinobacteria</name>
5469                         <clade>
5470                           <taxonomy>
5471                             <id provider="uniprot">200795</id>
5472                             <scientific_name>Chloroflexi</scientific_name>
5473                             <common_name>GNS bacteria</common_name>
5474                             <synonym>Thermomicrobia</synonym>
5475                             <rank>phylum</rank>
5476                           </taxonomy>
5477                           <clade>
5478                             <taxonomy>
5479                               <id provider="uniprot">32061</id>
5480                               <scientific_name>Chloroflexi (class)</scientific_name>
5481                               <synonym>Chloroflecales</synonym>
5482                               <synonym>Chloroflexus/Deinococcus group</synonym>
5483                               <rank>class</rank>
5484                             </taxonomy>
5485                             <clade>
5486                               <name>b_122</name>
5487                               <taxonomy>
5488                                 <id provider="uniprot">1106</id>
5489                                 <scientific_name>Chloroflexaceae</scientific_name>
5490                                 <common_name>filamentous anoxygenic phototrophic bacteria</common_name>
5491                                 <rank>family</rank>
5492                               </taxonomy>
5493                               <clade>
5494                                 <name>CHLAU</name>
5495                                 <taxonomy>
5496                                   <id provider="uniprot">1108</id>
5497                                   <code>CHLAU</code>
5498                                   <scientific_name>Chloroflexus aurantiacus</scientific_name>
5499                                   <rank>species</rank>
5500                                 </taxonomy>
5501                               </clade>
5502                               <clade>
5503                                 <taxonomy>
5504                                   <id provider="uniprot">383372</id>
5505                                   <code>ROSCS</code>
5506                                   <scientific_name>Roseiflexus castenholzii (strain DSM 13941 / HLO8)</scientific_name>
5507                                   <rank>species</rank>
5508                                 </taxonomy>
5509                               </clade>
5510                             </clade>
5511                             <clade>
5512                               <name>HERAU</name>
5513                               <taxonomy>
5514                                 <id provider="uniprot">65</id>
5515                                 <code>HERAU</code>
5516                                 <scientific_name>Herpetosiphon aurantiacus</scientific_name>
5517                                 <synonym>Herpetosiphon giganteus</synonym>
5518                                 <rank>species</rank>
5519                               </taxonomy>
5520                             </clade>
5521                           </clade>
5522                           <clade>
5523                             <taxonomy>
5524                               <id provider="uniprot">479434</id>
5525                               <code>SPHTD</code>
5526                               <scientific_name>Sphaerobacter thermophilus (strain DSM 20745 / S 6022)</scientific_name>
5527                               <rank>strain</rank>
5528                             </taxonomy>
5529                           </clade>
5530                         </clade>
5531                         <clade>
5532                           <taxonomy>
5533                             <id provider="uniprot">201174</id>
5534                             <scientific_name>Actinobacteria</scientific_name>
5535                             <rank>phylum</rank>
5536                           </taxonomy>
5537                           <clade>
5538                             <taxonomy>
5539                               <id provider="uniprot">2037</id>
5540                               <scientific_name>Actinomycetales</scientific_name>
5541                               <rank>order</rank>
5542                             </taxonomy>
5543                             <clade>
5544                               <name>b_115</name>
5545                               <clade>
5546                                 <name>KINRD</name>
5547                                 <taxonomy>
5548                                   <id provider="uniprot">266940</id>
5549                                   <code>KINRD</code>
5550                                   <scientific_name>Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)</scientific_name>
5551                                 </taxonomy>
5552                               </clade>
5553                               <clade>
5554                                 <name>KOCRD</name>
5555                                 <taxonomy>
5556                                   <id provider="uniprot">378753</id>
5557                                   <code>KOCRD</code>
5558                                   <scientific_name>Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201)</scientific_name>
5559                                 </taxonomy>
5560                               </clade>
5561                               <clade>
5562                                 <name>STRCO</name>
5563                                 <taxonomy>
5564                                   <id provider="uniprot">1902</id>
5565                                   <code>STRCO</code>
5566                                   <scientific_name>Streptomyces coelicolor</scientific_name>
5567                                   <rank>species</rank>
5568                                 </taxonomy>
5569                               </clade>
5570                               <clade>
5571                                 <name>THEFY</name>
5572                                 <taxonomy>
5573                                   <id provider="uniprot">269800</id>
5574                                   <code>THEFY</code>
5575                                   <scientific_name>Thermobifida fusca (strain YX)</scientific_name>
5576                                 </taxonomy>
5577                               </clade>
5578                               <clade>
5579                                 <taxonomy>
5580                                   <id provider="uniprot">1032480</id>
5581                                   <code>MICPN</code>
5582                                   <scientific_name>Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1)</scientific_name>
5583                                   <common_name>Microlunatus phosphovorus NM-1</common_name>
5584                                   <rank>strain</rank>
5585                                 </taxonomy>
5586                               </clade>
5587                             </clade>
5588                             <clade>
5589                               <taxonomy>
5590                                 <id provider="uniprot">85007</id>
5591                                 <scientific_name>Corynebacterineae</scientific_name>
5592                                 <rank>suborder</rank>
5593                               </taxonomy>
5594                               <clade>
5595                                 <taxonomy>
5596                                   <id provider="uniprot">1763</id>
5597                                   <scientific_name>Mycobacterium</scientific_name>
5598                                   <rank>genus</rank>
5599                                 </taxonomy>
5600                                 <clade>
5601                                   <name>MYCLE</name>
5602                                   <taxonomy>
5603                                     <id provider="uniprot">1769</id>
5604                                     <code>MYCLE</code>
5605                                     <scientific_name>Mycobacterium leprae</scientific_name>
5606                                     <rank>species</rank>
5607                                   </taxonomy>
5608                                 </clade>
5609                                 <clade>
5610                                   <name>MYCTU</name>
5611                                   <taxonomy>
5612                                     <id provider="uniprot">1773</id>
5613                                     <code>MYCTU</code>
5614                                     <scientific_name>Mycobacterium tuberculosis</scientific_name>
5615                                     <rank>species</rank>
5616                                   </taxonomy>
5617                                 </clade>
5618                               </clade>
5619                               <clade>
5620                                 <name>CORJK</name>
5621                                 <taxonomy>
5622                                   <id provider="uniprot">306537</id>
5623                                   <code>CORJK</code>
5624                                   <scientific_name>Corynebacterium jeikeium (strain K411)</scientific_name>
5625                                 </taxonomy>
5626                               </clade>
5627                               <clade>
5628                                 <taxonomy>
5629                                   <id provider="uniprot">632772</id>
5630                                   <code>RHOOB</code>
5631                                   <scientific_name>Rhodococcus opacus (strain B4)</scientific_name>
5632                                   <rank>strain</rank>
5633                                 </taxonomy>
5634                               </clade>
5635                             </clade>
5636                           </clade>
5637                           <clade>
5638                             <name>RUBXD</name>
5639                             <taxonomy>
5640                               <id provider="uniprot">266117</id>
5641                               <code>RUBXD</code>
5642                               <scientific_name>Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)</scientific_name>
5643                             </taxonomy>
5644                           </clade>
5645                         </clade>
5646                       </clade>
5647                       <clade>
5648                         <name>b_132</name>
5649                         <taxonomy>
5650                           <id provider="uniprot">188787</id>
5651                           <scientific_name>Deinococci</scientific_name>
5652                           <rank>class</rank>
5653                         </taxonomy>
5654                         <clade>
5655                           <name>b_130</name>
5656                           <taxonomy>
5657                             <id provider="uniprot">1298</id>
5658                             <scientific_name>Deinococcus</scientific_name>
5659                             <rank>genus</rank>
5660                           </taxonomy>
5661                           <clade>
5662                             <name>DEIGD</name>
5663                             <taxonomy>
5664                               <id provider="uniprot">319795</id>
5665                               <code>DEIGD</code>
5666                               <scientific_name>Deinococcus geothermalis (strain DSM 11300)</scientific_name>
5667                             </taxonomy>
5668                           </clade>
5669                           <clade>
5670                             <name>DEIRA</name>
5671                             <taxonomy>
5672                               <id provider="uniprot">1299</id>
5673                               <code>DEIRA</code>
5674                               <scientific_name>Deinococcus radiodurans</scientific_name>
5675                               <rank>species</rank>
5676                             </taxonomy>
5677                           </clade>
5678                         </clade>
5679                         <clade>
5680                           <name>THETH</name>
5681                           <taxonomy>
5682                             <id provider="uniprot">274</id>
5683                             <code>THETH</code>
5684                             <scientific_name>Thermus thermophilus</scientific_name>
5685                             <rank>species</rank>
5686                           </taxonomy>
5687                         </clade>
5688                       </clade>
5689                     </clade>
5690                     <clade>
5691                       <name>b_162</name>
5692                       <taxonomy>
5693                         <id provider="uniprot">1117</id>
5694                         <scientific_name>Cyanobacteria</scientific_name>
5695                         <rank>phylum</rank>
5696                       </taxonomy>
5697                       <clade>
5698                         <name>b_154</name>
5699                         <clade>
5700                           <name>b_152</name>
5701                           <clade>
5702                             <name>b_146</name>
5703                             <clade>
5704                               <name>b_144</name>
5705                               <clade>
5706                                 <name>b_142</name>
5707                                 <clade>
5708                                   <name>b_138</name>
5709                                   <taxonomy>
5710                                     <id provider="uniprot">1162</id>
5711                                     <scientific_name>Nostocaceae</scientific_name>
5712                                     <rank>family</rank>
5713                                   </taxonomy>
5714                                   <clade>
5715                                     <name>b_136</name>
5716                                     <clade>
5717                                       <name>ANAVA</name>
5718                                       <taxonomy>
5719                                         <id provider="uniprot">1172</id>
5720                                         <code>ANAVA</code>
5721                                         <scientific_name>Anabaena variabilis</scientific_name>
5722                                         <rank>species</rank>
5723                                       </taxonomy>
5724                                     </clade>
5725                                     <clade>
5726                                       <name>NOSS7</name>
5727                                       <taxonomy>
5728                                         <id provider="uniprot">28072</id>
5729                                         <code>NOSS7</code>
5730                                         <scientific_name>Nostoc sp. (strain PCC 7524)</scientific_name>
5731                                         <rank>species</rank>
5732                                       </taxonomy>
5733                                     </clade>
5734                                   </clade>
5735                                   <clade>
5736                                     <name>NOSP7</name>
5737                                     <taxonomy>
5738                                       <id provider="uniprot">63737</id>
5739                                       <code>NOSP7</code>
5740                                       <scientific_name>Nostoc punctiforme (strain ATCC 29133 / PCC 73102)</scientific_name>
5741                                     </taxonomy>
5742                                   </clade>
5743                                 </clade>
5744                                 <clade>
5745                                   <name>ACAMR</name>
5746                                   <taxonomy>
5747                                     <id provider="uniprot">155978</id>
5748                                     <code>ACAMR</code>
5749                                     <scientific_name>Acaryochloris marina</scientific_name>
5750                                     <rank>species</rank>
5751                                   </taxonomy>
5752                                 </clade>
5753                               </clade>
5754                               <clade>
5755                                 <name>MICAN</name>
5756                                 <taxonomy>
5757                                   <id provider="uniprot">449447</id>
5758                                   <code>MICAN</code>
5759                                   <scientific_name>Microcystis aeruginosa (strain NIES-843)</scientific_name>
5760                                 </taxonomy>
5761                               </clade>
5762                             </clade>
5763                             <clade>
5764                               <name>TRIER</name>
5765                               <taxonomy>
5766                                 <id provider="uniprot">1206</id>
5767                                 <code>TRIER</code>
5768                                 <scientific_name>Trichodesmium erythraeum</scientific_name>
5769                                 <rank>species</rank>
5770                               </taxonomy>
5771                             </clade>
5772                           </clade>
5773                           <clade>
5774                             <name>b_149</name>
5775                             <taxonomy>
5776                               <id provider="uniprot">1118</id>
5777                               <scientific_name>Chroococcales</scientific_name>
5778                               <rank>order</rank>
5779                             </taxonomy>
5780                             <clade>
5781                               <name>SYNEL</name>
5782                               <taxonomy>
5783                                 <id provider="uniprot">32046</id>
5784                                 <code>SYNEL</code>
5785                                 <scientific_name>Synechococcus elongatus</scientific_name>
5786                                 <rank>species</rank>
5787                               </taxonomy>
5788                             </clade>
5789                             <clade>
5790                               <name>SYNY3</name>
5791                               <taxonomy>
5792                                 <id provider="uniprot">1148</id>
5793                                 <code>SYNY3</code>
5794                                 <scientific_name>Synechocystis sp. (strain PCC 6803)</scientific_name>
5795                                 <rank>species</rank>
5796                               </taxonomy>
5797                             </clade>
5798                           </clade>
5799                         </clade>
5800                         <clade>
5801                           <name>GLOVI</name>
5802                           <taxonomy>
5803                             <id provider="uniprot">33072</id>
5804                             <code>GLOVI</code>
5805                             <scientific_name>Gloeobacter violaceus</scientific_name>
5806                             <rank>species</rank>
5807                           </taxonomy>
5808                         </clade>
5809                       </clade>
5810                       <clade>
5811                         <name>b_161</name>
5812                         <clade>
5813                           <name>b_159</name>
5814                           <taxonomy>
5815                             <id provider="uniprot">1218</id>
5816                             <scientific_name>Prochlorococcus</scientific_name>
5817                             <rank>genus</rank>
5818                           </taxonomy>
5819                           <clade>
5820                             <name>b_157</name>
5821                             <clade>
5822                               <name>PROMA</name>
5823                               <taxonomy>
5824                                 <id provider="uniprot">1219</id>
5825                                 <code>PROMA</code>
5826                                 <scientific_name>Prochlorococcus marinus</scientific_name>
5827                                 <rank>species</rank>
5828                               </taxonomy>
5829                             </clade>
5830                             <clade>
5831                               <name>PROMP</name>
5832                               <taxonomy>
5833                                 <id provider="uniprot">59919</id>
5834                                 <code>PROMP</code>
5835                                 <scientific_name>Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4)</scientific_name>
5836                               </taxonomy>
5837                             </clade>
5838                           </clade>
5839                           <clade>
5840                             <name>PROMM</name>
5841                             <taxonomy>
5842                               <id provider="uniprot">74547</id>
5843                               <code>PROMM</code>
5844                               <scientific_name>Prochlorococcus marinus (strain MIT 9313)</scientific_name>
5845                             </taxonomy>
5846                           </clade>
5847                         </clade>
5848                         <clade>
5849                           <name>SYNS3</name>
5850                           <taxonomy>
5851                             <id provider="uniprot">64471</id>
5852                             <code>SYNS3</code>
5853                             <scientific_name>Synechococcus sp. (strain CC9311)</scientific_name>
5854                             <rank>species</rank>
5855                           </taxonomy>
5856                         </clade>
5857                       </clade>
5858                     </clade>
5859                   </clade>
5860                   <clade>
5861                     <name>b_192</name>
5862                     <clade>
5863                       <name>b_190</name>
5864                       <clade>
5865                         <name>b_178</name>
5866                         <clade>
5867                           <name>b_176</name>
5868                           <taxonomy>
5869                             <id provider="uniprot">191412</id>
5870                             <scientific_name>Chlorobiaceae</scientific_name>
5871                             <rank>family</rank>
5872                           </taxonomy>
5873                           <clade>
5874                             <name>b_170</name>
5875                             <clade>
5876                               <name>b_166</name>
5877                               <clade>
5878                                 <name>CHLPB</name>
5879                                 <taxonomy>
5880                                   <id provider="uniprot">331678</id>
5881                                   <code>CHLPB</code>
5882                                   <scientific_name>Chlorobium phaeobacteroides (strain BS1)</scientific_name>
5883                                 </taxonomy>
5884                               </clade>
5885                               <clade>
5886                                 <name>PROAE</name>
5887                                 <taxonomy>
5888                                   <id provider="uniprot">1102</id>
5889                                   <code>PROAE</code>
5890                                   <scientific_name>Prosthecochloris aestuarii</scientific_name>
5891                                   <rank>species</rank>
5892                                 </taxonomy>
5893                               </clade>
5894                             </clade>
5895                             <clade>
5896                               <name>b_169</name>
5897                               <taxonomy>
5898                                 <id provider="uniprot">274493</id>
5899                                 <scientific_name>Chlorobium/Pelodictyon group</scientific_name>
5900                               </taxonomy>
5901                               <clade>
5902                                 <name>PELLU</name>
5903                                 <taxonomy>
5904                                   <id provider="uniprot">1100</id>
5905                                   <code>PELLU</code>
5906                                   <scientific_name>Pelodictyon luteolum</scientific_name>
5907                                   <rank>species</rank>
5908                                 </taxonomy>
5909                               </clade>
5910                               <clade>
5911                                 <name>PROVI</name>
5912                                 <taxonomy>
5913                                   <id provider="uniprot">290318</id>
5914                                   <code>PROVI</code>
5915                                   <scientific_name>Prosthecochloris vibrioformis (strain DSM 265)</scientific_name>
5916                                   <common_name>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 265)</common_name>
5917                                   <synonym>Chlorobium phaeovibrioides (strain DSM 265)</synonym>
5918                                 </taxonomy>
5919                               </clade>
5920                             </clade>
5921                           </clade>
5922                           <clade>
5923                             <name>b_175</name>
5924                             <clade>
5925                               <name>b_173</name>
5926                               <taxonomy>
5927                                 <id provider="uniprot">256319</id>
5928                                 <scientific_name>Chlorobaculum</scientific_name>
5929                                 <rank>genus</rank>
5930                               </taxonomy>
5931                               <clade>
5932                                 <name>CHLP8</name>
5933                                 <taxonomy>
5934                                   <id provider="uniprot">517417</id>
5935                                   <code>CHLP8</code>
5936                                   <scientific_name>Chlorobaculum parvum (strain NCIB 8327)</scientific_name>
5937                                   <synonym>Chlorobium vibrioforme subsp. thiosulfatophilum (strain DSM 263 / NCIB 8327)</synonym>
5938                                 </taxonomy>
5939                               </clade>
5940                               <clade>
5941                                 <name>CHLTE</name>
5942                                 <taxonomy>
5943                                   <id provider="uniprot">1097</id>
5944                                   <code>CHLTE</code>
5945                                   <scientific_name>Chlorobium tepidum</scientific_name>
5946                                   <rank>species</rank>
5947                                 </taxonomy>
5948                               </clade>
5949                             </clade>
5950                             <clade>
5951                               <name>CHLCH</name>
5952                               <taxonomy>
5953                                 <id provider="uniprot">340177</id>
5954                                 <code>CHLCH</code>
5955                                 <scientific_name>Chlorobium chlorochromatii (strain CaD3)</scientific_name>
5956                               </taxonomy>
5957                             </clade>
5958                           </clade>
5959                         </clade>
5960                         <clade>
5961                           <name>CHLTA</name>
5962                           <taxonomy>
5963                             <id provider="uniprot">315277</id>
5964                             <code>CHLTA</code>
5965                             <scientific_name>Chlamydia trachomatis serovar A (strain HAR-13 / ATCC VR-571B)</scientific_name>
5966                           </taxonomy>
5967                         </clade>
5968                       </clade>
5969                       <clade>
5970                         <name>b_189</name>
5971                         <taxonomy>
5972                           <id provider="uniprot">976</id>
5973                           <scientific_name>Bacteroidetes</scientific_name>
5974                           <rank>phylum</rank>
5975                         </taxonomy>
5976                         <clade>
5977                           <name>b_183</name>
5978                           <clade>
5979                             <name>b_181</name>
5980                             <taxonomy>
5981                               <id provider="uniprot">49546</id>
5982                               <scientific_name>Flavobacteriaceae</scientific_name>
5983                               <rank>family</rank>
5984                             </taxonomy>
5985                             <clade>
5986                               <name>FLAJO</name>
5987                               <taxonomy>
5988                                 <id provider="uniprot">986</id>
5989                                 <code>FLAJO</code>
5990                                 <scientific_name>Flavobacterium johnsoniae</scientific_name>
5991                                 <synonym>Cytophaga johnsonae</synonym>
5992                                 <rank>species</rank>
5993                               </taxonomy>
5994                             </clade>
5995                             <clade>
5996                               <name>GRAFK</name>
5997                               <taxonomy>
5998                                 <id provider="uniprot">411154</id>
5999                                 <code>GRAFK</code>
6000                                 <scientific_name>Gramella forsetii (strain KT0803)</scientific_name>
6001                               </taxonomy>
6002                             </clade>
6003                           </clade>
6004                           <clade>
6005                             <name>CYTH3</name>
6006                             <taxonomy>
6007                               <id provider="uniprot">269798</id>
6008                               <code>CYTH3</code>
6009                               <scientific_name>Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)</scientific_name>
6010                             </taxonomy>
6011                           </clade>
6012                         </clade>
6013                         <clade>
6014                           <name>b_188</name>
6015                           <taxonomy>
6016                             <id provider="uniprot">171549</id>
6017                             <scientific_name>Bacteroidales</scientific_name>
6018                             <rank>order</rank>
6019                           </taxonomy>
6020                           <clade>
6021                             <name>b_186</name>
6022                             <taxonomy>
6023                               <id provider="uniprot">816</id>
6024                               <scientific_name>Bacteroides</scientific_name>
6025                               <rank>genus</rank>
6026                             </taxonomy>
6027                             <clade>
6028                               <name>BACFR</name>
6029                               <taxonomy>
6030                                 <id provider="uniprot">817</id>
6031                                 <code>BACFR</code>
6032                                 <scientific_name>Bacteroides fragilis</scientific_name>
6033                                 <rank>species</rank>
6034                               </taxonomy>
6035                             </clade>
6036                             <clade>
6037                               <name>BACTN</name>
6038                               <taxonomy>
6039                                 <id provider="uniprot">818</id>
6040                                 <code>BACTN</code>
6041                                 <scientific_name>Bacteroides thetaiotaomicron</scientific_name>
6042                                 <rank>species</rank>
6043                               </taxonomy>
6044                             </clade>
6045                           </clade>
6046                           <clade>
6047                             <name>PORGI</name>
6048                             <taxonomy>
6049                               <id provider="uniprot">837</id>
6050                               <code>PORGI</code>
6051                               <scientific_name>Porphyromonas gingivalis</scientific_name>
6052                               <synonym>Bacteroides gingivalis</synonym>
6053                               <rank>species</rank>
6054                             </taxonomy>
6055                           </clade>
6056                         </clade>
6057                       </clade>
6058                     </clade>
6059                     <clade>
6060                       <name>SALRD</name>
6061                       <taxonomy>
6062                         <id provider="uniprot">309807</id>
6063                         <code>SALRD</code>
6064                         <scientific_name>Salinibacter ruber (strain DSM 13855 / M31)</scientific_name>
6065                       </taxonomy>
6066                     </clade>
6067                   </clade>
6068                 </clade>
6069               </clade>
6070               <clade>
6071                 <name>b_199</name>
6072                 <clade>
6073                   <name>b_197</name>
6074                   <taxonomy>
6075                     <scientific_name>Verrucomicrobia</scientific_name>
6076                   </taxonomy>
6077                   <clade>
6078                     <name>AKKM8</name>
6079                     <taxonomy>
6080                       <id provider="uniprot">349741</id>
6081                       <code>AKKM8</code>
6082                       <scientific_name>Akkermansia muciniphila (strain ATCC BAA-835)</scientific_name>
6083                     </taxonomy>
6084                   </clade>
6085                   <clade>
6086                     <name>METI4</name>
6087                     <taxonomy>
6088                       <id provider="uniprot">481448</id>
6089                       <code>METI4</code>
6090                       <scientific_name>Methylacidiphilum infernorum (isolate V4)</scientific_name>
6091                       <synonym>Methylokorus infernorum (strain V4)</synonym>
6092                     </taxonomy>
6093                   </clade>
6094                 </clade>
6095                 <clade>
6096                   <name>LEPIC</name>
6097                   <taxonomy>
6098                     <id provider="uniprot">44275</id>
6099                     <code>LEPIC</code>
6100                     <scientific_name>Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni</scientific_name>
6101                   </taxonomy>
6102                 </clade>
6103               </clade>
6104             </clade>
6105             <clade>
6106               <name>b_225</name>
6107               <clade>
6108                 <name>b_219</name>
6109                 <taxonomy>
6110                   <id provider="uniprot">1239</id>
6111                   <scientific_name>Firmicutes</scientific_name>
6112                   <rank>phylum</rank>
6113                 </taxonomy>
6114                 <clade>
6115                   <name>b_213</name>
6116                   <clade>
6117                     <taxonomy>
6118                       <id provider="uniprot">1385</id>
6119                       <scientific_name>Bacillales</scientific_name>
6120                       <rank>order</rank>
6121                     </taxonomy>
6122                     <clade>
6123                       <taxonomy>
6124                         <id provider="uniprot">186817</id>
6125                         <scientific_name>Bacillaceae</scientific_name>
6126                         <rank>family</rank>
6127                       </taxonomy>
6128                       <clade>
6129                         <taxonomy>
6130                           <id provider="uniprot">1386</id>
6131                           <scientific_name>Bacillus</scientific_name>
6132                           <rank>genus</rank>
6133                         </taxonomy>
6134                         <clade>
6135                           <taxonomy>
6136                             <id provider="uniprot">86661</id>
6137                             <scientific_name>Bacillus cereus group</scientific_name>
6138                           </taxonomy>
6139                           <clade>
6140                             <name>BACAN</name>
6141                             <taxonomy>
6142                               <id provider="uniprot">1392</id>
6143                               <code>BACAN</code>
6144                               <scientific_name>Bacillus anthracis</scientific_name>
6145                               <rank>species</rank>
6146                             </taxonomy>
6147                           </clade>
6148                           <clade>
6149                             <taxonomy>
6150                               <id provider="uniprot">572264</id>
6151                               <code>BACC3</code>
6152                               <scientific_name>Bacillus cereus (strain 03BB102)</scientific_name>
6153                               <rank>strain</rank>
6154                             </taxonomy>
6155                           </clade>
6156                         </clade>
6157                         <clade>
6158                           <taxonomy>
6159                             <id provider="uniprot">1423</id>
6160                             <code>BACSU</code>
6161                             <scientific_name>Bacillus subtilis</scientific_name>
6162                             <rank>species</rank>
6163                           </taxonomy>
6164                         </clade>
6165                       </clade>
6166                       <clade>
6167                         <name>b_206</name>
6168                         <clade>
6169                           <name>BACHD</name>
6170                           <taxonomy>
6171                             <id provider="uniprot">86665</id>
6172                             <code>BACHD</code>
6173                             <scientific_name>Bacillus halodurans</scientific_name>
6174                             <rank>species</rank>
6175                           </taxonomy>
6176                         </clade>
6177                         <clade>
6178                           <name>GEOKA</name>
6179                           <taxonomy>
6180                             <id provider="uniprot">1462</id>
6181                             <code>GEOKA</code>
6182                             <scientific_name>Geobacillus kaustophilus</scientific_name>
6183                             <rank>species</rank>
6184                           </taxonomy>
6185                         </clade>
6186                       </clade>
6187                     </clade>
6188                     <clade>
6189                       <name>b_210</name>
6190                       <clade>
6191                         <name>LISMO</name>
6192                         <taxonomy>
6193                           <id provider="uniprot">1639</id>
6194                           <code>LISMO</code>
6195                           <scientific_name>Listeria monocytogenes</scientific_name>
6196                           <rank>species</rank>
6197                         </taxonomy>
6198                       </clade>
6199                       <clade>
6200                         <name>STAAU</name>
6201                         <taxonomy>
6202                           <id provider="uniprot">1280</id>
6203                           <code>STAAU</code>
6204                           <scientific_name>Staphylococcus aureus</scientific_name>
6205                           <rank>species</rank>
6206                         </taxonomy>
6207                       </clade>
6208                     </clade>
6209                   </clade>
6210                   <clade>
6211                     <name>CLOP1</name>
6212                     <taxonomy>
6213                       <id provider="uniprot">195103</id>
6214                       <code>CLOP1</code>
6215                       <scientific_name>Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A)</scientific_name>
6216                     </taxonomy>
6217                   </clade>
6218                 </clade>
6219                 <clade>
6220                   <name>Clostridia</name>
6221                   <taxonomy>
6222                     <id provider="uniprot">186801</id>
6223                     <scientific_name>Clostridia</scientific_name>
6224                     <rank>class</rank>
6225                   </taxonomy>
6226                   <clade>
6227                     <name>b_218</name>
6228                     <clade>
6229                       <name>b_216</name>
6230                       <taxonomy>
6231                         <id provider="uniprot">186814</id>
6232                         <scientific_name>Thermoanaerobacteriaceae</scientific_name>
6233                         <rank>family</rank>
6234                       </taxonomy>
6235                       <clade>
6236                         <name>CARHZ</name>
6237                         <taxonomy>
6238                           <id provider="uniprot">246194</id>
6239                           <code>CARHZ</code>
6240                           <scientific_name>Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008)</scientific_name>
6241                         </taxonomy>
6242                       </clade>
6243                       <clade>
6244                         <name>THETN</name>
6245                         <taxonomy>
6246                           <id provider="uniprot">119072</id>
6247                           <code>THETN</code>
6248                           <scientific_name>Thermoanaerobacter tengcongensis</scientific_name>
6249                           <rank>species</rank>
6250                         </taxonomy>
6251                       </clade>
6252                     </clade>
6253                     <clade>
6254                       <name>DESHA</name>
6255                       <taxonomy>
6256                         <id provider="uniprot">49338</id>
6257                         <code>DESHA</code>
6258                         <scientific_name>Desulfitobacterium hafniense</scientific_name>
6259                         <synonym>Desulfitobacterium frappieri</synonym>
6260                         <rank>species</rank>
6261                       </taxonomy>
6262                     </clade>
6263                   </clade>
6264                   <clade>
6265                     <name>EUBR3</name>
6266                     <taxonomy>
6267                       <id provider="uniprot">515619</id>
6268                       <code>EUBR3</code>
6269                       <scientific_name>Eubacterium rectale (strain ATCC 33656 / VPI 0990)</scientific_name>
6270                     </taxonomy>
6271                   </clade>
6272                 </clade>
6273               </clade>
6274               <clade>
6275                 <name>b_224</name>
6276                 <taxonomy>
6277                   <id provider="uniprot">188709</id>
6278                   <scientific_name>Thermotogaceae</scientific_name>
6279                   <rank>family</rank>
6280                 </taxonomy>
6281                 <clade>
6282                   <name>b_222</name>
6283                   <clade>
6284                     <name>FERNB</name>
6285                     <taxonomy>
6286                       <id provider="uniprot">381764</id>
6287                       <code>FERNB</code>
6288                       <scientific_name>Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1)</scientific_name>
6289                     </taxonomy>
6290                   </clade>
6291                   <clade>
6292                     <name>THELT</name>
6293                     <taxonomy>
6294                       <id provider="uniprot">416591</id>
6295                       <code>THELT</code>
6296                       <scientific_name>Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO)</scientific_name>
6297                     </taxonomy>
6298                   </clade>
6299                 </clade>
6300                 <clade>
6301                   <name>THEMA</name>
6302                   <taxonomy>
6303                     <id provider="uniprot">2336</id>
6304                     <code>THEMA</code>
6305                     <scientific_name>Thermotoga maritima</scientific_name>
6306                     <rank>species</rank>
6307                   </taxonomy>
6308                 </clade>
6309               </clade>
6310             </clade>
6311           </clade>
6312           <clade>
6313             <name>b_267</name>
6314             <clade>
6315               <name>b_263</name>
6316               <clade>
6317                 <name>b_251</name>
6318                 <clade>
6319                   <name>b_249</name>
6320                   <clade>
6321                     <name>b_245</name>
6322                     <clade>
6323                       <name>b_237</name>
6324                       <clade>
6325                         <name>b_233</name>
6326                         <taxonomy>
6327                           <id provider="uniprot">31969</id>
6328                           <scientific_name>Mollicutes</scientific_name>
6329                           <rank>class</rank>
6330                         </taxonomy>
6331                         <clade>
6332                           <name>b_231</name>
6333                           <clade>
6334                             <name>b_229</name>
6335                             <taxonomy>
6336                               <scientific_name>Mycoplasma</scientific_name>
6337                             </taxonomy>
6338                             <clade>
6339                               <name>MYCGE</name>
6340                               <taxonomy>
6341                                 <id provider="uniprot">2097</id>
6342                                 <code>MYCGE</code>
6343                                 <scientific_name>Mycoplasma genitalium</scientific_name>
6344                                 <rank>species</rank>
6345                               </taxonomy>
6346                             </clade>
6347                             <clade>
6348                               <name>MYCPN</name>
6349                               <taxonomy>
6350                                 <id provider="uniprot">2104</id>
6351                                 <code>MYCPN</code>
6352                                 <scientific_name>Mycoplasma pneumoniae</scientific_name>
6353                                 <rank>species</rank>
6354                               </taxonomy>
6355                             </clade>
6356                           </clade>
6357                           <clade>
6358                             <name>MESFL</name>
6359                             <taxonomy>
6360                               <id provider="uniprot">2151</id>
6361                               <code>MESFL</code>
6362                               <scientific_name>Mesoplasma florum</scientific_name>
6363                               <synonym>Acholeplasma florum</synonym>
6364                               <rank>species</rank>
6365                             </taxonomy>
6366                           </clade>
6367                         </clade>
6368                         <clade>
6369                           <name>UREPA</name>
6370                           <taxonomy>
6371                             <id provider="uniprot">134821</id>
6372                             <code>UREPA</code>
6373                             <scientific_name>Ureaplasma parvum</scientific_name>
6374                             <synonym>Ureaplasma urealyticum biotype 1</synonym>
6375                             <rank>species</rank>
6376                           </taxonomy>
6377                         </clade>
6378                       </clade>
6379                       <clade>
6380                         <name>b_236</name>
6381                         <taxonomy>
6382                           <id provider="uniprot">137</id>
6383                           <scientific_name>Spirochaetaceae</scientific_name>
6384                           <rank>family</rank>
6385                         </taxonomy>
6386                         <clade>
6387                           <name>BORBU</name>
6388                           <taxonomy>
6389                             <id provider="uniprot">139</id>
6390                             <code>BORBU</code>
6391                             <scientific_name>Borrelia burgdorferi</scientific_name>
6392                             <common_name>Lyme disease spirochete</common_name>
6393                             <rank>species</rank>
6394                           </taxonomy>
6395                         </clade>
6396                         <clade>
6397                           <name>TREPA</name>
6398                           <taxonomy>
6399                             <id provider="uniprot">160</id>
6400                             <code>TREPA</code>
6401                             <scientific_name>Treponema pallidum</scientific_name>
6402                             <rank>species</rank>
6403                           </taxonomy>
6404                         </clade>
6405                       </clade>
6406                     </clade>
6407                     <clade>
6408                       <name>b_244</name>
6409                       <clade>
6410                         <name>b_242</name>
6411                         <taxonomy>
6412                           <id provider="uniprot">1113537</id>
6413                           <scientific_name>Chlamydia/Chlamydophila group</scientific_name>
6414                         </taxonomy>
6415                         <clade>
6416                           <name>b_240</name>
6417                           <clade>
6418                             <name>CHLPN</name>
6419                             <taxonomy>
6420                               <id provider="uniprot">83558</id>
6421                               <code>CHLPN</code>
6422                               <scientific_name>Chlamydia pneumoniae</scientific_name>
6423                               <synonym>Chlamydophila pneumoniae</synonym>
6424                               <rank>species</rank>
6425                             </taxonomy>
6426                           </clade>
6427                           <clade>
6428                             <name>CHLFF</name>
6429                             <taxonomy>
6430                               <id provider="uniprot">264202</id>
6431                               <code>CHLFF</code>
6432                               <scientific_name>Chlamydophila felis (strain Fe/C-56)</scientific_name>
6433                             </taxonomy>
6434                           </clade>
6435                         </clade>
6436                         <clade>
6437                           <name>CHLMU</name>
6438                           <taxonomy>
6439                             <id provider="uniprot">83560</id>
6440                             <code>CHLMU</code>
6441                             <scientific_name>Chlamydia muridarum</scientific_name>
6442                             <rank>species</rank>
6443                           </taxonomy>
6444                         </clade>
6445                       </clade>
6446                       <clade>
6447                         <name>RICTY</name>
6448                         <taxonomy>
6449                           <id provider="uniprot">785</id>
6450                           <code>RICTY</code>
6451                           <scientific_name>Rickettsia typhi</scientific_name>
6452                           <rank>species</rank>
6453                         </taxonomy>
6454                       </clade>
6455                     </clade>
6456                   </clade>
6457                   <clade>
6458                     <taxonomy>
6459                       <id provider="uniprot">28211</id>
6460                       <scientific_name>Alphaproteobacteria</scientific_name>
6461                       <rank>class</rank>
6462                     </taxonomy>
6463                     <clade>
6464                       <taxonomy>
6465                         <id provider="uniprot">38323</id>
6466                         <code>BARHE</code>
6467                         <scientific_name>Bartonella henselae</scientific_name>
6468                         <synonym>Rochalimaea henselae</synonym>
6469                         <rank>species</rank>
6470                       </taxonomy>
6471                     </clade>
6472                     <clade>
6473                       <taxonomy>
6474                         <id provider="uniprot">198252</id>
6475                         <code>PELUB</code>
6476                         <scientific_name>Pelagibacter ubique</scientific_name>
6477                         <rank>species</rank>
6478                       </taxonomy>
6479                     </clade>
6480                     <clade>
6481                       <taxonomy>
6482                         <id provider="uniprot">780</id>
6483                         <scientific_name>Rickettsia</scientific_name>
6484                         <rank>genus</rank>
6485                       </taxonomy>
6486                       <clade>
6487                         <taxonomy>
6488                           <id provider="uniprot">452659</id>
6489                           <code>RICRO</code>
6490                           <scientific_name>Rickettsia rickettsii (strain Iowa)</scientific_name>
6491                           <rank>strain</rank>
6492                         </taxonomy>
6493                       </clade>
6494                       <clade>
6495                         <taxonomy>
6496                           <id provider="uniprot">391896</id>
6497                           <code>RICB8</code>
6498                           <scientific_name>Rickettsia bellii (strain OSU 85-389)</scientific_name>
6499                         </taxonomy>
6500                       </clade>
6501                     </clade>
6502                   </clade>
6503                 </clade>
6504                 <clade>
6505                   <name>FRATU</name>
6506                   <taxonomy>
6507                     <id provider="uniprot">263</id>
6508                     <code>FRATU</code>
6509                     <scientific_name>Francisella tularensis</scientific_name>
6510                     <rank>species</rank>
6511                   </taxonomy>
6512                 </clade>
6513               </clade>
6514               <clade>
6515                 <name>b_262</name>
6516                 <clade>
6517                   <name>b_260</name>
6518                   <clade>
6519                     <name>b_258</name>
6520                     <taxonomy>
6521                       <id provider="uniprot">186826</id>
6522                       <scientific_name>Lactobacillales</scientific_name>
6523                       <rank>order</rank>
6524                     </taxonomy>
6525                     <clade>
6526                       <name>b_256</name>
6527                       <taxonomy>
6528                         <id provider="uniprot">1300</id>
6529                         <scientific_name>Streptococcaceae</scientific_name>
6530                         <rank>family</rank>
6531                       </taxonomy>
6532                       <clade>
6533                         <name>b_254</name>
6534                         <taxonomy>
6535                           <id provider="uniprot">1301</id>
6536                           <scientific_name>Streptococcus</scientific_name>
6537                           <rank>genus</rank>
6538                         </taxonomy>
6539                         <clade>
6540                           <name>STRPN</name>
6541                           <taxonomy>
6542                             <id provider="uniprot">1313</id>
6543                             <code>STRPN</code>
6544                             <scientific_name>Streptococcus pneumoniae</scientific_name>
6545                             <rank>species</rank>
6546                           </taxonomy>
6547                         </clade>
6548                         <clade>
6549                           <name>STRPY</name>
6550                           <taxonomy>
6551                             <id provider="uniprot">1314</id>
6552                             <code>STRPY</code>
6553                             <scientific_name>Streptococcus pyogenes</scientific_name>
6554                             <rank>species</rank>
6555                           </taxonomy>
6556                         </clade>
6557                       </clade>
6558                       <clade>
6559                         <name>LACLA</name>
6560                         <taxonomy>
6561                           <id provider="uniprot">1360</id>
6562                           <code>LACLA</code>
6563                           <scientific_name>Lactococcus lactis subsp. lactis</scientific_name>
6564                           <synonym>Streptococcus lactis</synonym>
6565                           <rank>subspecies</rank>
6566                         </taxonomy>
6567                       </clade>
6568                     </clade>
6569                     <clade>
6570                       <name>LACAC</name>
6571                       <taxonomy>
6572                         <id provider="uniprot">1579</id>
6573                         <code>LACAC</code>
6574                         <scientific_name>Lactobacillus acidophilus</scientific_name>
6575                         <rank>species</rank>
6576                       </taxonomy>
6577                     </clade>
6578                   </clade>
6579                   <clade>
6580                     <name>BIFLO</name>
6581                     <taxonomy>
6582                       <id provider="uniprot">216816</id>
6583                       <code>BIFLO</code>
6584                       <scientific_name>Bifidobacterium longum</scientific_name>
6585                       <rank>species</rank>
6586                     </taxonomy>
6587                   </clade>
6588                 </clade>
6589                 <clade>
6590                   <name>FUSNU</name>
6591                   <taxonomy>
6592                     <id provider="uniprot">851</id>
6593                     <code>FUSNU</code>
6594                     <scientific_name>Fusobacterium nucleatum</scientific_name>
6595                     <rank>species</rank>
6596                   </taxonomy>
6597                 </clade>
6598               </clade>
6599             </clade>
6600             <clade>
6601               <name>b_266</name>
6602               <taxonomy>
6603                 <id provider="uniprot">61434</id>
6604                 <scientific_name>Dehalococcoides</scientific_name>
6605                 <rank>genus</rank>
6606               </taxonomy>
6607               <clade>
6608                 <name>DEHE1</name>
6609                 <taxonomy>
6610                   <id provider="uniprot">243164</id>
6611                   <code>DEHE1</code>
6612                   <scientific_name>Dehalococcoides ethenogenes (strain 195)</scientific_name>
6613                 </taxonomy>
6614               </clade>
6615               <clade>
6616                 <name>DEHSB</name>
6617                 <taxonomy>
6618                   <id provider="uniprot">216389</id>
6619                   <code>DEHSB</code>
6620                   <scientific_name>Dehalococcoides sp. (strain BAV1)</scientific_name>
6621                   <rank>species</rank>
6622                 </taxonomy>
6623               </clade>
6624             </clade>
6625           </clade>
6626         </clade>
6627         <clade>
6628           <name>b_277</name>
6629           <taxonomy>
6630             <id provider="uniprot">29547</id>
6631             <scientific_name>Epsilonproteobacteria</scientific_name>
6632             <rank>class</rank>
6633           </taxonomy>
6634           <clade>
6635             <name>b_273</name>
6636             <clade>
6637               <name>NITSB</name>
6638               <taxonomy>
6639                 <id provider="uniprot">387092</id>
6640                 <code>NITSB</code>
6641                 <scientific_name>Nitratiruptor sp. (strain SB155-2)</scientific_name>
6642                 <rank>species</rank>
6643               </taxonomy>
6644             </clade>
6645             <clade>
6646               <name>SULNB</name>
6647               <taxonomy>
6648                 <id provider="uniprot">387093</id>
6649                 <code>SULNB</code>
6650                 <scientific_name>Sulfurovum sp. (strain NBC37-1)</scientific_name>
6651                 <rank>species</rank>
6652               </taxonomy>
6653             </clade>
6654           </clade>
6655           <clade>
6656             <name>b_276</name>
6657             <taxonomy>
6658               <id provider="uniprot">213849</id>
6659               <scientific_name>Campylobacterales</scientific_name>
6660               <rank>order</rank>
6661             </taxonomy>
6662             <clade>
6663               <name>CAMJE</name>
6664               <taxonomy>
6665                 <id provider="uniprot">197</id>
6666                 <code>CAMJE</code>
6667                 <scientific_name>Campylobacter jejuni</scientific_name>
6668                 <rank>species</rank>
6669               </taxonomy>
6670             </clade>
6671             <clade>
6672               <name>HELPH</name>
6673               <taxonomy>
6674                 <id provider="uniprot">357544</id>
6675                 <code>HELPH</code>
6676                 <scientific_name>Helicobacter pylori (strain HPAG1)</scientific_name>
6677               </taxonomy>
6678             </clade>
6679           </clade>
6680         </clade>
6681       </clade>
6682       <clade>
6683         <name>AQUAE</name>
6684         <taxonomy>
6685           <id provider="uniprot">63363</id>
6686           <code>AQUAE</code>
6687           <scientific_name>Aquifex aeolicus</scientific_name>
6688           <rank>species</rank>
6689         </taxonomy>
6690       </clade>
6691     </clade>
6692   </clade>
6693 </phylogeny>
6694 </phyloxml>