forester_applications/src/org/forester/applications/phylo2graphics.java

   1
   2 package org.forester.applications;
   3
   4 import java.awt.Color;
   5 import java.io.File;
   6 import java.io.IOException;
   7
   8 import org.forester.archaeopteryx.AptxUtil;
   9 import org.forester.archaeopteryx.AptxUtil.GraphicsExportType;
  10 import org.forester.archaeopteryx.Configuration;
  11 import org.forester.archaeopteryx.Options;
  12 import org.forester.archaeopteryx.TreeColorSet;
  13
  14 public class phylo2graphics {
  15
  16     public static void main( final String[] args ) {
  17         try {
  18             final Configuration config = new Configuration();
  19             // Could also read a configuration file with:
  20             // Configuration config = new Configuration("my_configuration_file.txt", false, false, false);
  21             config.putDisplayColors( TreeColorSet.BACKGROUND, new Color( 255, 255, 255 ) );
  22             config.putDisplayColors( TreeColorSet.BRANCH, new Color( 0, 0, 0 ) );
  23             config.putDisplayColors( TreeColorSet.TAXONOMY, new Color( 0, 0, 0 ) );
  24             config.setPhylogenyGraphicsType( Options.PHYLOGENY_GRAPHICS_TYPE.RECTANGULAR );
  25             AptxUtil.writePhylogenyToGraphicsFile( new File( "/home/czmasek/tol_117_TEST.xml" ),
  26                                                    new File( "/home/czmasek/tol_117_TEST_.png" ),
  27                                                    1000,
  28                                                    1000,
  29                                                    GraphicsExportType.PNG,
  30                                                    config );
  31             // If the tree 'phy' already exists, can also use this:
  32             //AptxUtil.writePhylogenyToGraphicsFile( phy,
  33             //                                       new File( "/home/czmasek/tol_117_TEST_.png" ),
  34             //                                      1000,
  35             //                                      1000,
  36             //                                      GraphicsExportType.PNG,
  37             //                                      config );
  38         }
  39         catch ( final IOException e ) {
  40             e.printStackTrace();
  41         }
  42     }
  43 }