3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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6 * This file is part of Jalview.
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11 * of the License, or (at your option) any later version.
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16 * PURPOSE. See the GNU General Public License for more details.
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20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <title>Alignment Window Menus</title>
28 <strong>Alignment Window View Menu</strong>
31 <li><strong>New View (Control T)</strong><em><br>
32 Creates a new view from the current alignment view. </em></li>
33 <li><strong>Expand Views (X)</strong><em><br> Display
34 each view associated with the alignment in its own alignment
35 window, allowing several views to be displayed simultaneously. </em></li>
36 <li><strong>Gather Views (G)</strong><em><br> Each
37 view associated with the alignment will be displayed within its
38 own tab on the current alignment window. </em></li>
39 <li><strong>Show→(all Columns / Sequences /
40 Sequences and Columns</strong>)</strong><em><br> All hidden Columns /
41 Sequences / Sequences and Columns will be revealed. </em></li>
42 <li><strong>Hide→(all Columns / Sequences /
43 Selected Region / All but Selected Region)</strong><em><br>
44 Hides the currently selected Columns / Sequences / Region or
45 everything but the selected Region.</em></li>
46 <li><strong>Automatic Scrolling<br>
47 </strong><em>When selected, the view will automatically scroll to
48 display the highlighted sequence position corresponding to the
49 position under the mouse pointer in a linked alignment or
50 structure view.</em></li>
51 <li><strong>Show Sequence Features</strong><br> <em>Show
52 or hide sequence features on this alignment.</em></li>
53 <li><strong><a href="../features/featuresettings.html">Sequence
54 Feature Settings...</a></strong><em><br> Opens the Sequence
55 Feature Settings dialog box to control the colour and display of
56 sequence features on the alignment.</em></li>
57 <li><strong>Sequence ID Tooltip</strong><em> (application
58 only) <br>This submenu's options allow the inclusion or
59 exclusion of non-positional sequence features or database cross
60 references from the tooltip shown when the mouse hovers over the
63 <li><strong>Alignment Properties...<br>
64 </strong><em>Displays some simple statistics computed for the current
65 alignment view and any named properties defined on the whole
67 <li><strong><a href="../features/overview.html">Overview
68 Window</a><br> </strong><em>A scaled version of the alignment
69 will be displayed in a small window. A red box will indicate the
70 currently visible area of the alignment. Move the visible region
71 using the mouse. </em></li>