3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
4 * Copyright (C) $$Year-Rel$$ The Jalview Authors
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3
11 * of the License, or (at your option) any later version.
13 * Jalview is distributed in the hope that it will be useful, but
14 * WITHOUT ANY WARRANTY; without even the implied warranty
15 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
16 * PURPOSE. See the GNU General Public License for more details.
18 * You should have received a copy of the GNU General Public License
19 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <title>What's new ?</title>
27 <strong>Welcome to Jalview Version $$Version-Rel$$ !!</strong>
29 look at the <a href="releases.html#Jalview.$$Version-Rel$$">release
30 notes</a> for this build. Read on for the highlights.
33 <strong>Highlights in 2.11.2</strong>
35 <p><strong>New features for working with 3D Structure</strong><br/>
36 Jalview 2.11.2 features a number of new capabilities:<ul><li><strong>Linked viewing with <em>ChimeraX</em> and <em>PyMol</em></strong><br/>Simply configure your prefered viewer for 3D molecular data in <a href="features/preferences.html#structure">Jalview's structure preferences</a>, make sure that Jalview can locate the viewer's installation, and open a new view via the 3D Structure Chooser!</li>
37 <li><strong>View predicted protein structures via 3D-Beacons</strong><br/>
38 Jalview 2.11.2's <a href="features/structurechooser.html">Structure Chooser includes a client for the 3D-Beacons Network</a>, a new service that allows predicted and observed 3D models for proteins in Uniprot from a range of resources, including AlphaFold DB, SWISS-MODEL and a growing number of other resources.
43 For the full release notes, see <a
44 href="releases.html#Jalview.2.11.1.4">the Jalview 2.11.1.4
48 <strong>Known Issues</strong>
50 <p>New known issues in this release affect recovery of CDS/Protein
51 relationships from project files, and interactive selection of
52 protein sequences from a tree built on linked nucleotide sequences.
53 We will provide patches for these issues as soon as possible.</p>