check dispalyChar is not null
[jalview.git] / help / help.jhm
1 <?xml version="1.0" encoding="ISO-8859-1" ?>
2    <!DOCTYPE map PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN" "http://java.sun.com/products/javahelp/map_1_0.dtd">
3 <map version="1.0">
4    <mapID target="home" url="html/index.html" />
5    
6    <mapID target="new" url="html/whatsNew.html"/>
7    <mapID target="release" url="html/releases.html"/>
8    <mapID target="alannotation" url="html/features/annotation.html"/>
9    <mapID target="keys" url="html/keys.html"/>
10    <mapID target="newkeys" url="html/features/newkeystrokes.html"/>
11    <mapID target="cursor" url="html/features/cursorMode.html"/>
12    <mapID target="search" url="html/features/search.html"/>   
13    <mapID target="webservice" url="html/webServices/index.html"/>
14    <mapID target="msaservice" url="html/webServices/msaclient.html"/>
15    <mapID target="clustal" url="html/webServices/clustalw.html"/>
16    <mapID target="muscle" url="html/webServices/muscle.html"/>
17    <mapID target="mafft" url="html/webServices/mafft.html"/>
18    <mapID target="jnet" url="html/webServices/jnet.html"/>
19    <mapID target="seqfetch" url="html/features/seqfetch.html"/>
20    <mapID target="seqfeatures" url="html/features/seqfeatures.html"/>
21    <mapID target="seqfeatedit" url="html/features/editingFeatures.html"/>
22    <mapID target="seqfeatcreat" url="html/features/creatinFeatures.html"/>
23    <mapID target="seqfeatures.settings" url="html/features/featuresettings.html"/>
24    <mapID target="viewingpdbs" url="html/features/viewingpdbs.html"/>
25    <mapID target="preferences" url="html/features/preferences.html"/>     
26    <mapID target="commandline" url="html/features/commandline.html"/>
27    <mapID target="clarguments" url="html/features/clarguments.html"/>
28    <mapID target="io" url="html/io/index.html"/>
29    <mapID target="io.modellerpir" url="html/io/modellerpir.html"/>
30    <mapID target="export" url="html/io/export.html"/>
31    <mapID target="alformats" url="html/io/fileformats.html"/>
32    <mapID target="annotations.fileformat" url="html/features/annotationsFormat.html"/>
33    <mapID target="features.fileformat" url="html/features/featuresFormat.html"/>
34    <mapID target="das.settings" url="html/features/dassettings.html"/>
35    <mapID target="das.viewing" url="html/features/dasfeatures.html"/>
36    <mapID target="edit" url="html/editing/index.html"/>
37    <mapID target="jalarchive" url="html/features/jalarchive.html"/>
38    <mapID target="multipleviews" url="html/features/multipleViews.html"/>
39    <mapID target="trees" url="html/calculations/tree.html"/>
40    <mapID target="sorting" url="html/calculations/sorting.html"/>
41    <mapID target="pca" url="html/calculations/pca.html"/>
42    <mapID target="pairwise" url="html/calculations/pairwise.html"/>
43    <mapID target="redundancy" url="html/calculations/redundancy.html"/>
44    <mapID target="hiddenRegions" url="html/features/hiddenRegions.html"/>
45    <mapID target="recoverInputdata" url="html/calculations/recoverInputdata.html"/>
46    <mapID target="colours" url="html/colourSchemes/index.html"/>
47    <mapID target="backdeptextcol" url="html/colourSchemes/textcolour.html"/>
48    <mapID target="colours.clustal" url="html/colourSchemes/clustal.html"/>
49    <mapID target="colours.zappo" url="html/colourSchemes/zappo.html" />
50    <mapID target="colours.taylor" url="html/colourSchemes/taylor.html" />
51    <mapID target="colours.hydro" url="html/colourSchemes/hydrophobic.html" />
52    <mapID target="colours.helix" url="html/colourSchemes/helix.html" />
53    <mapID target="colours.strand" url="html/colourSchemes/strand.html" />
54    <mapID target="colours.turn" url="html/colourSchemes/turn.html" />
55    <mapID target="colours.buried" url="html/colourSchemes/buried.html" />
56    <mapID target="colours.nucleotide" url="html/colourSchemes/nucleotide.html" />
57    <mapID target="colours.blosum" url="html/colourSchemes/blosum.html" />
58    <mapID target="colours.pid" url="html/colourSchemes/pid.html" />
59    <mapID target="colours.user" url="html/colourSchemes/user.html"/>
60    <mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>
61    <mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>
62    <mapID target="colours.annotation" url="html/colourSchemes/annotationColouring.html"/>
63    
64    <mapID target="calcs.alquality" url="html/calculations/quality.html"/>   
65    <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
66    <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>
67    
68    <mapID target="menus" url="html/menus/index.html"/>
69    <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>
70    <mapID target="alMenu" url="html/menus/alignmentMenu.html"/>
71    <mapID target="alwFile" url="html/menus/alwfile.html"/>
72    <mapID target="alwEdit" url="html/menus/alwedit.html"/>
73    <mapID target="alwSelect" url="html/menus/alwselect.html"/>
74    <mapID target="alwView" url="html/menus/alwview.html"/>
75    <mapID target="alwFormat" url="html/menus/alwformat.html"/>
76    <mapID target="alwColour" url="html/menus/alwcolour.html"/>
77    <mapID target="alwCalc" url="html/menus/alwcalculate.html"/>
78    
79    <mapID target="wsMenu" url="html/menus/wsmenu.html"/>
80    <mapID target="popMenu" url="html/menus/popupMenu.html"/>
81    <mapID target="annotMenus" url="html/menus/alwannotations.html"/>
82    
83    <mapID target="memory" url="html/memory.html" />
84    <mapID target="jalviewjnlp" url="html/jalviewjnlp.html" />
85    
86    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
87    <mapID target="aaProperties" url="html/misc/aaproperties.html" />
88    <mapID target="geneticCode" url="html/misc/geneticCode.html" />
89    
90    <mapID target="backIcon" url="icons/back.png" />
91    <mapID target="forwardIcon" url="icons/forward.png" />
92    <mapID target="homeIcon" url="icons/Home.png" />
93    <mapID target="printIcon" url="icons/print.png" />
94    <mapID target="printSetupIcon" url="icons/setup.png" />
95 </map>