help/help.jhm

   1 <?xml version="1.0" encoding="ISO-8859-1" ?>\r
   2    <!DOCTYPE map PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN" "http://java.sun.com/products/javahelp/map_1_0.dtd">\r
   3 <map version="1.0">\r
   4    <mapID target="home" url="html/index.html" />\r
   5    \r
   6    <mapID target="new" url="html/whatsNew.html"/>\r
   7    <mapID target="release" url="html/releases.html"/>\r
   8    <mapID target="alannotation" url="html/features/annotation.html"/>\r
   9    <mapID target="keys" url="html/keys.html"/>\r
  10    <mapID target="cursor" url="html/features/cursorMode.html"/>\r
  11    <mapID target="search" url="html/features/search.html"/>   \r
  12    <mapID target="webservice" url="html/webServices/index.html"/>\r
  13    <mapID target="msaservice" url="html/webServices/msaclient.html"/>\r
  14    <mapID target="clustal" url="html/webServices/clustalw.html"/>\r
  15    <mapID target="muscle" url="html/webServices/muscle.html"/>\r
  16    <mapID target="mafft" url="html/webServices/mafft.html"/>\r
  17    <mapID target="jnet" url="html/webServices/jnet.html"/>\r
  18    <mapID target="seqfetch" url="html/features/seqfetch.html"/>\r
  19    <mapID target="seqfeatures" url="html/features/seqfeatures.html"/>\r
  20    <mapID target="seqfeatures.settings" url="html/features/featuresettings.html"/>\r
  21    <mapID target="viewingpdbs" url="html/features/viewingpdbs.html"/>\r
  22    <mapID target="preferences" url="html/features/preferences.html"/>     \r
  23    <mapID target="io" url="html/io/index.html"/>\r
  24    <mapID target="io.modellerpir" url="html/io/modellerpir.html"/>\r
  25    <mapID target="export" url="html/io/export.html"/>\r
  26    <mapID target="alformats" url="html/io/fileformats.html"/>\r
  27    <mapID target="annotations.fileformat" url="html/features/annotationsFormat.html"/>\r
  28    <mapID target="features.fileformat" url="html/features/featuresFormat.html"/>\r
  29    <mapID target="das.settings" url="html/features/dassettings.html"/>\r
  30    <mapID target="das.viewing" url="html/features/dasfeatures.html"/>\r
  31    <mapID target="edit" url="html/editing/index.html"/>\r
  32    <mapID target="jalarchive" url="html/features/jalarchive.html"/>\r
  33    <mapID target="trees" url="html/calculations/tree.html"/>\r
  34    <mapID target="sorting" url="html/calculations/sorting.html"/>\r
  35    <mapID target="pca" url="html/calculations/pca.html"/>\r
  36    <mapID target="pairwise" url="html/calculations/pairwise.html"/>\r
  37    <mapID target="redundancy" url="html/calculations/redundancy.html"/>\r
  38    <mapID target="hiddenRegions" url="html/features/hiddenRegions.html"/>\r
  39    <mapID target="recoverInputdata" url="html/calculations/recoverInputdata.html"/>\r
  40    <mapID target="colours" url="html/colourSchemes/index.html" />\r
  41    <mapID target="colours.clustal" url="html/colourSchemes/clustal.html"/>\r
  42    <mapID target="colours.zappo" url="html/colourSchemes/zappo.html" />\r
  43    <mapID target="colours.taylor" url="html/colourSchemes/taylor.html" />\r
  44    <mapID target="colours.hydro" url="html/colourSchemes/hydrophobic.html" />\r
  45    <mapID target="colours.helix" url="html/colourSchemes/helix.html" />\r
  46    <mapID target="colours.strand" url="html/colourSchemes/strand.html" />\r
  47    <mapID target="colours.turn" url="html/colourSchemes/turn.html" />\r
  48    <mapID target="colours.buried" url="html/colourSchemes/buried.html" />\r
  49    <mapID target="colours.nucleotide" url="html/colourSchemes/nucleotide.html" />\r
  50    <mapID target="colours.blosum" url="html/colourSchemes/blosum.html" />\r
  51    <mapID target="colours.pid" url="html/colourSchemes/pid.html" />\r
  52    <mapID target="colours.user" url="html/colourSchemes/user.html"/>\r
  53    <mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>\r
  54    <mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>\r
  55    <mapID target="colours.annotation" url="html/colourSchemes/annotationColouring.html"/>\r
  56    \r
  57    <mapID target="calcs.alquality" url="html/calculations/quality.html"/>   \r
  58    <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>\r
  59    <mapID target="calcs.consensus" url="html/calculations/consensus.html"/>\r
  60    \r
  61    <mapID target="menus" url="html/menus/index.html"/>\r
  62    <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>\r
  63    <mapID target="alMenu" url="html/menus/alignmentMenu.html"/>\r
  64    <mapID target="alwFile" url="html/menus/alwfile.html"/>\r
  65    <mapID target="alwEdit" url="html/menus/alwedit.html"/>\r
  66    <mapID target="alwView" url="html/menus/alwview.html"/>\r
  67    <mapID target="alwColour" url="html/menus/alwcolour.html"/>\r
  68    <mapID target="alwCalc" url="html/menus/alwcalculate.html"/>\r
  69    \r
  70    <mapID target="wsMenu" url="html/menus/wsmenu.html"/>\r
  71    <mapID target="popMenu" url="html/menus/popupMenu.html"/>\r
  72    <mapID target="annotMenus" url="html/menus/alwannotations.html"/>\r
  73    \r
  74    <mapID target="memory" url="html/memory.html" />\r
  75    <mapID target="jalviewjnlp" url="html/jalviewjnlp.html" />\r
  76    \r
  77    <mapID target="aminoAcids" url="html/misc/aminoAcids.html" />\r
  78    <mapID target="aaProperties" url="html/misc/aaproperties.html" />\r
  79    <mapID target="geneticCode" url="html/misc/geneticCode.html" />\r
  80    \r
  81    <mapID target="backIcon" url="icons/back.png" />\r
  82    <mapID target="forwardIcon" url="icons/forward.png" />\r
  83    <mapID target="homeIcon" url="icons/Home.png" />\r
  84    <mapID target="printIcon" url="icons/print.png" />\r
  85    <mapID target="printSetupIcon" url="icons/setup.png" />\r
  86    \r
  87 </map>\r