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2 # Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
3 # Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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20 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
21 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
23 * This file is part of Jalview.
25 * Jalview is free software: you can redistribute it and/or
26 * modify it under the terms of the GNU General Public License
27 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
29 * Jalview is distributed in the hope that it will be useful, but
30 * WITHOUT ANY WARRANTY; without even the implied warranty
31 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
32 * PURPOSE. See the GNU General Public License for more details.
34 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
36 <head><title>Hydrophobic Colour Scheme</title>
37 <style type="text/css">
47 <p><em>Hydrophobicity</em></p>
48 <p>According to the hydrophobicity table of Kyte, J., and Doolittle, R.F., J.
49 Mol. Biol. 1157, 105-132, 1982. The most hydrophobic residues according to this
50 table are coloured red and the most hydrophilic ones are coloured blue.</p>
52 <table width="400" border="1">
54 <td bgcolor="#ff0000">I</td>
55 <td bgcolor="#f60009">V</td>
56 <td bgcolor="#ea0015">L</td>
57 <td bgcolor="#cb0034">F</td>
58 <td bgcolor="#c2003d">C</td>
61 <td bgcolor="#b0004f">M</td>
62 <td bgcolor="#ad0052">A</td>
63 <td bgcolor="#6a0095">G</td>
64 <td bgcolor="#680097">X</td>
65 <td bgcolor="#61009e">T</td>
68 <td bgcolor="#5e00a1">S</td>
69 <td bgcolor="#5b00a4">W</td>
70 <td bgcolor="#4f00b0">Y</td>
71 <td bgcolor="#4600b9">P</td>
72 <td bgcolor="#1500ea">H</td>
75 <td bgcolor="#0c00f3">E</td>
76 <td bgcolor="#0c00f3">Z</td>
77 <td bgcolor="#0c00f3">Q</td>
78 <td bgcolor="#0c00f3">D</td>
79 <td bgcolor="#0c00f3">B</td>
82 <td bgcolor="#0c00f3">N</td>
83 <td bgcolor="#0000ff">K</td>
84 <td bgcolor="#0000ff">R</td>