3 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
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15 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
16 * PURPOSE. See the GNU General Public License for more details.
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20 * The Jalview Authors are detailed in the 'AUTHORS' file.
23 <title>DAS Features</title>
28 <strong>DAS Sequence Feature Retrieval</strong>
30 <p>Jalview includes a client for retrieving sequences and their
31 features via the Distributed Annotation System.</p>
33 <li>Open the Feature Settings panel by selecting "View
34 -> Feature Settings..."</li>
35 <li>Click on the "<a href="dassettings.html">DAS
36 Settings</a>" tabbed pane.
38 <li>Select the sources to use for DAS feature retrieval, then
39 click the "Fetch DAS Features" button.
41 <li>Cancelling Feature Retrieval<br> Press the <strong>Cancel
42 Fetch</strong> button to immediately stop feature retrieval. This
43 will not remove any features already added to the alignment,
44 but will halt any outstanding DAS requests.<em>The cancel
45 fetch button is of particular use when one or more DAS
46 annotation servers are not responding!</em>
51 If your DAS source selection contains sources which use UniProt
52 accession ids, you will be asked whether Jalview should find UniProt
53 Accession ids for the given sequence names. It is important to
54 realise that many DAS sources only use UniProt accession ids, rather
55 than Swissprot/UniProt sequence names.<br> The <a
56 href="../webServices/dbreffetcher.html">database
57 reference fetcher</a> documentation describes how Jalview discovers
58 what database references are appropriate for the sequences in the
61 <li><em>Note</em><br> Please remember to save your
62 alignment if either the start/end numbering, or the sequence IDs
63 were updated during the ID retrieval process.</li>
67 <em>DAS support was introduced in Jalview Version 2.1.</em>
71 <em>The DAS registry at http://www.dasregistry.org was
72 decommissioned early in 2015. An unmaintained mirror is currently
73 hosted at http://www.ebi.ac.uk/das-srv/registry/.</em>