3 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
4 * Copyright (C) 2014 The Jalview Authors
6 * This file is part of Jalview.
8 * Jalview is free software: you can redistribute it and/or
9 * modify it under the terms of the GNU General Public License
10 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
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18 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 <title>Mapping Between Different Sequences</title>
24 <p><strong>Mapping Between Different Sequences</strong></p>
25 <p>A new feature in Jalview 2.3 is the ability to map between sequences in different
26 domains, based on alignment, or by the use of explicit mappings provided by
28 <p>The most familiar mapping is the one used to identify
29 the coordinates corresponding to a displayed sequence when
30 viewing a PDB file associated with a sequence (see
31 <a href="viewingpdbs.html">"Viewing PDB Files"</a>
32 for more information.</p>
33 <p>The newest form of mapping supported by Jalview is the
34 correspondence between DNA and protein sequences. This mapping
35 can be imported directly from EMBL and EMBLCDS database records
36 retrieved by the <a href="seqfetch.html">Sequence Fetcher</a>,
37 and allows sequence features to be mapped directly from Uniprot
38 das sources to their coding region on EMBL sequence records.