JAL-2416 score matrix gap symbol (if any) dynamically determined
[jalview.git] / help / html / features / wrap.html
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22 <head>
23 <title>Wrap Alignment</title>
24 </head>
25
26 <body>
27   <p>
28     <strong>View&#8594;Wrap alignment </strong>
29   </p>
30   <p>Use this feature to wrap an alignment to the screen width.</p>
31   <p>All output (HTML, Printing, JPG etc) will also be in this
32     wrapped format.</p>
33   <p>This is most useful when looking at alignments with less than
34     20 sequences.</p>
35   <table width="480" border="1">
36     <tr>
37       <td>
38
39         <table border="0" cellpadding="0" cellspacing="0">
40           <tr>
41             <td colspan="6">&nbsp;</td>
42             <td colspan="9">10<br> |
43             </td>
44             <td></td>
45             <td colspan="9">20<br> |
46             </td>
47             <td></td>
48           </tr>
49           <tr>
50             <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
51             <td bgcolor="#e6331a">K</td>
52             <td bgcolor="#1ab3b3">H</td>
53             <td bgcolor="#80b3e6">V</td>
54             <td bgcolor="#80b3e6">C</td>
55             <td bgcolor="#1ab3b3">Y</td>
56             <td bgcolor="#80b3e6">V</td>
57             <td bgcolor="#80b3e6">A</td>
58             <td>D</td>
59             <td bgcolor="#80b3e6">C</td>
60             <td bgcolor="#e6994d">G</td>
61             <td bgcolor="#e6994d">G</td>
62             <td bgcolor="#80b3e6">I</td>
63             <td>A</td>
64             <td bgcolor="#80b3e6">L</td>
65             <td>E</td>
66             <td bgcolor="#1acc1a">T</td>
67             <td bgcolor="#1acc1a">S</td>
68             <td bgcolor="#e6331a">K</td>
69             <td bgcolor="#80b3e6">V</td>
70             <td bgcolor="#80b3e6">L</td>
71             <td bgcolor="#80b3e6">M</td>
72             <td>T</td>
73             <td bgcolor="#e6331a">K</td>
74             <td>N</td>
75             <td bgcolor="#80b3e6">I</td>
76             <td bgcolor="#80b3e6">A</td>
77           </tr>
78           <tr>
79             <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
80             <td>S</td>
81             <td>N</td>
82             <td bgcolor="#80b3e6">I</td>
83             <td bgcolor="#80b3e6">I</td>
84             <td bgcolor="#80b3e6">F</td>
85             <td bgcolor="#80b3e6">V</td>
86             <td bgcolor="#80b3e6">A</td>
87             <td bgcolor="#e6994d">G</td>
88             <td bgcolor="#80b3e6">L</td>
89             <td bgcolor="#e6994d">G</td>
90             <td bgcolor="#e6994d">G</td>
91             <td bgcolor="#80b3e6">I</td>
92             <td bgcolor="#e6994d">G</td>
93             <td bgcolor="#80b3e6">L</td>
94             <td bgcolor="#cc4dcc">D</td>
95             <td bgcolor="#1acc1a">T</td>
96             <td bgcolor="#1acc1a">S</td>
97             <td bgcolor="#e6331a">R</td>
98             <td>E</td>
99             <td bgcolor="#80b3e6">I</td>
100             <td bgcolor="#80b3e6">V</td>
101             <td>K</td>
102             <td>S</td>
103             <td bgcolor="#e6994d">G</td>
104             <td bgcolor="#cccc00">P</td>
105             <td>K</td>
106           </tr>
107           <tr>
108             <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
109             <td bgcolor="#e6331a">K</td>
110             <td bgcolor="#80b3e6">V</td>
111             <td bgcolor="#80b3e6">A</td>
112             <td bgcolor="#80b3e6">L</td>
113             <td bgcolor="#80b3e6">V</td>
114             <td bgcolor="#1acc1a">T</td>
115             <td bgcolor="#e6994d">G</td>
116             <td>A</td>
117             <td bgcolor="#80b3e6">A</td>
118             <td>Q</td>
119             <td bgcolor="#e6994d">G</td>
120             <td bgcolor="#80b3e6">I</td>
121             <td bgcolor="#e6994d">G</td>
122             <td>R</td>
123             <td>A</td>
124             <td>F</td>
125             <td>A</td>
126             <td bgcolor="#cc4dcc">E</td>
127             <td bgcolor="#80b3e6">A</td>
128             <td bgcolor="#80b3e6">L</td>
129             <td bgcolor="#80b3e6">L</td>
130             <td>L</td>
131             <td bgcolor="#e6331a">K</td>
132             <td bgcolor="#e6994d">G</td>
133             <td>.</td>
134             <td bgcolor="#80b3e6">A</td>
135           </tr>
136           <tr>
137             <td height="5"></td>
138           </tr>
139           <tr>
140             <td colspan="6">&nbsp;</td>
141             <td colspan="9">36<br> |
142             </td>
143             <td></td>
144             <td colspan="9">46<br> |
145             </td>
146             <td></td>
147           </tr>
148           <tr>
149             <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
150             <td bgcolor="#e6331a">K</td>
151             <td bgcolor="#80b3e6">L</td>
152             <td bgcolor="#80b3e6">A</td>
153             <td bgcolor="#80b3e6">I</td>
154             <td bgcolor="#80b3e6">L</td>
155             <td>Q</td>
156             <td>S</td>
157             <td bgcolor="#80b3e6">V</td>
158             <td>E</td>
159             <td bgcolor="#1acc1a">N</td>
160             <td bgcolor="#cccc00">P</td>
161             <td bgcolor="#cccc00">P</td>
162             <td>.</td>
163             <td>.</td>
164             <td>.</td>
165             <td>.</td>
166             <td>.</td>
167             <td>.</td>
168             <td>.</td>
169             <td>.</td>
170             <td>A</td>
171             <td bgcolor="#80b3e6">I</td>
172             <td bgcolor="#80b3e6">A</td>
173             <td bgcolor="#1acc1a">Q</td>
174             <td bgcolor="#80b3e6">L</td>
175             <td>Q</td>
176           </tr>
177           <tr>
178             <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
179             <td>N</td>
180             <td bgcolor="#80b3e6">L</td>
181             <td bgcolor="#80b3e6">V</td>
182             <td bgcolor="#80b3e6">V</td>
183             <td bgcolor="#80b3e6">L</td>
184             <td bgcolor="#cc4dcc">D</td>
185             <td>R</td>
186             <td bgcolor="#80b3e6">I</td>
187             <td bgcolor="#cc4dcc">D</td>
188             <td bgcolor="#1acc1a">N</td>
189             <td bgcolor="#cccc00">P</td>
190             <td bgcolor="#80b3e6">A</td>
191             <td>A</td>
192             <td>.</td>
193             <td>.</td>
194             <td>.</td>
195             <td>.</td>
196             <td>.</td>
197             <td>.</td>
198             <td>.</td>
199             <td>.</td>
200             <td bgcolor="#80b3e6">I</td>
201             <td bgcolor="#80b3e6">A</td>
202             <td bgcolor="#cc4dcc">E</td>
203             <td bgcolor="#80b3e6">L</td>
204             <td>K</td>
205           </tr>
206           <tr>
207             <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
208             <td bgcolor="#e6331a">K</td>
209             <td bgcolor="#80b3e6">V</td>
210             <td bgcolor="#80b3e6">A</td>
211             <td bgcolor="#80b3e6">L</td>
212             <td bgcolor="#80b3e6">V</td>
213             <td bgcolor="#cc4dcc">D</td>
214             <td>W</td>
215             <td>N</td>
216             <td>L</td>
217             <td>E</td>
218             <td bgcolor="#80b3e6">A</td>
219             <td bgcolor="#e6994d">G</td>
220             <td>.</td>
221             <td>.</td>
222             <td>.</td>
223             <td>.</td>
224             <td>.</td>
225             <td>.</td>
226             <td>.</td>
227             <td>V</td>
228             <td>Q</td>
229             <td bgcolor="#80b3e6">C</td>
230             <td>K</td>
231             <td>A</td>
232             <td bgcolor="#80b3e6">A</td>
233             <td>L</td>
234           </tr>
235           <tr>
236             <td height="5"></td>
237           </tr>
238           <tr>
239             <td colspan="6">&nbsp;</td>
240             <td colspan="9">62<br> |
241             </td>
242             <td></td>
243             <td colspan="9">72<br> |
244             </td>
245             <td></td>
246           </tr>
247           <tr>
248             <td nowrap>ADHR_DROPS/7-107&nbsp;&nbsp;</td>
249             <td>S</td>
250             <td bgcolor="#80b3e6">I</td>
251             <td>K</td>
252             <td bgcolor="#1ab3b3">H</td>
253             <td>S</td>
254             <td>.</td>
255             <td>.</td>
256             <td>.</td>
257             <td>.</td>
258             <td>T</td>
259             <td>Q</td>
260             <td bgcolor="#80b3e6">I</td>
261             <td bgcolor="#80b3e6">F</td>
262             <td bgcolor="#80b3e6">F</td>
263             <td bgcolor="#80b3e6">W</td>
264             <td>T</td>
265             <td bgcolor="#80b3e6">F</td>
266             <td bgcolor="#cc4dcc">D</td>
267             <td bgcolor="#80b3e6">V</td>
268             <td bgcolor="#1acc1a">T</td>
269             <td bgcolor="#80b3e6">M</td>
270             <td bgcolor="#80b3e6">A</td>
271             <td>R</td>
272             <td bgcolor="#cc4dcc">E</td>
273             <td bgcolor="#cc4dcc">E</td>
274             <td>M</td>
275           </tr>
276           <tr>
277             <td nowrap>ADH_DROHE/5-105&nbsp;&nbsp;</td>
278             <td>A</td>
279             <td bgcolor="#80b3e6">L</td>
280             <td>N</td>
281             <td bgcolor="#cccc00">P</td>
282             <td>.</td>
283             <td>.</td>
284             <td>.</td>
285             <td>.</td>
286             <td>K</td>
287             <td>V</td>
288             <td>T</td>
289             <td bgcolor="#80b3e6">I</td>
290             <td bgcolor="#1acc1a">T</td>
291             <td bgcolor="#80b3e6">F</td>
292             <td bgcolor="#1ab3b3">Y</td>
293             <td bgcolor="#cccc00">P</td>
294             <td bgcolor="#1ab3b3">Y</td>
295             <td bgcolor="#cc4dcc">D</td>
296             <td bgcolor="#80b3e6">V</td>
297             <td bgcolor="#1acc1a">T</td>
298             <td bgcolor="#80b3e6">V</td>
299             <td bgcolor="#cccc00">P</td>
300             <td>L</td>
301             <td>A</td>
302             <td bgcolor="#cc4dcc">E</td>
303             <td>T</td>
304           </tr>
305           <tr>
306             <td nowrap>PGDH_HUMAN/6-106&nbsp;&nbsp;</td>
307             <td>D</td>
308             <td>E</td>
309             <td>Q</td>
310             <td bgcolor="#80b3e6">F</td>
311             <td>E</td>
312             <td bgcolor="#cccc00">P</td>
313             <td>.</td>
314             <td>.</td>
315             <td>.</td>
316             <td>Q</td>
317             <td>K</td>
318             <td bgcolor="#1acc1a">T</td>
319             <td bgcolor="#80b3e6">L</td>
320             <td bgcolor="#80b3e6">F</td>
321             <td bgcolor="#80b3e6">I</td>
322             <td>Q</td>
323             <td bgcolor="#80b3e6">C</td>
324             <td bgcolor="#cc4dcc">D</td>
325             <td bgcolor="#80b3e6">V</td>
326             <td>A</td>
327             <td>D</td>
328             <td>Q</td>
329             <td>Q</td>
330             <td bgcolor="#1acc1a">Q</td>
331             <td>L</td>
332             <td>.</td>
333           </tr>
334           <tr>
335             <td height="5"></td>
336           </tr>
337
338
339         </table>
340   </table>
341
342
343 </body>
344 </html>